Abbas, Kaja; Procter, Simon R; Clark, Andrew; Flasche, Stefan; (2021) COVID-19's lost generation of unvaccinated children - Authors' reply. The Lancet. Global health, 9 (3). e251-. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(20)30537-4

Aerts, Céline; Leahy, Shannon; Mucasse, Humberto; Lala, Sanjay; Bramugy, Justina; Tann, Cally J; Madhi, Shabir A; Bardají, Azucena; Bassat, Quique; Dangor, Ziyaad; +3 more... Lawn, Joy E; Jit, Mark; Procter, Simon R; (2021) Quantifying the Acute Care Costs of Neonatal Bacterial Sepsis and Meningitis in Mozambique and South Africa. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 74 (Suppl_). S64-S69. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciab815

Afolabi, Muhammed O; Ishola, David; Manno, Daniela; Keshinro, Babajide; Bockstal, Viki; Rogers, Baimba; Owusu-Kyei, Kwabena; Serry-Bangura, Alimamy; Swaray, Ibrahim; Lowe, Brett; +25 more... Kowuor, Dickens; Baiden, Frank; Mooney, Thomas; Smout, Elizabeth; Köhn, Brian; Otieno, Godfrey T; Jusu, Morrison; Foster, Julie; Samai, Mohamed; Deen, Gibrilla Fadlu; Larson, Heidi; Lees, Shelley; Goldstein, Neil; Gallagher, Katherine E; Gaddah, Auguste; Heerwegh, Dirk; Callendret, Benoit; Luhn, Kerstin; Robinson, Cynthia; Greenwood, Brian; Leyssen, Maarten; Douoguih, Macaya; Leigh, Bailah; Watson-Jones, Deborah; EBL3001 study group; (2021) Safety and immunogenicity of the two-dose heterologous Ad26.ZEBOV and MVA-BN-Filo Ebola vaccine regimen in children in Sierra Leone: a randomised, double-blind, controlled trial. Lancet Infectious Diseases, 22 (1). pp. 110-122. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(21)00128-6

Afolabi, Muhammed Olanrewaju; Ishola, David; Manno, Daniela; Keshinro, Babajide; Bokstal, Viki; Rogers, Baimba; Owusu-Kyei, Kwabena; Serry-Bangura, Alimamy; Swaray, Bob; Lowe, Brett; +24 more... Kowuor, Dickens; Baiden, Frank; Mooney, Thomas; Smout, Elizabeth; Kohn, Brian; Otieno, Godfrey; Jusu, Morrison; Foster, Julie; Samai, Mohammed; Deen, Gibrilla-Fadlu; Larson, Heidi; Lees, Shelley; Goldstein, Nein; Gallagher, Katherine; Gaddah, Augustie; Heerwegh, Dirk; Callendret, Benoit; Luhn, Kerstin; Robinson, Cynthia; Greenwood, Brian; Leyssen, Maarten; Douoguih, Macaya; Leigh, Bailah; Watson-Jones, Deborah; (2021) Safety and immunogenicity of the two-dose heterologous Ad26.ZEBOV and MVA-BN-Filo Ebola vaccine regimen in children in Sierra Leone: a randomised, double-blind, controlled trial. Lancet Infectious Diseases. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(21)00128-6

Agrupis, Kristal An; Villanueva, Annavi Marie G; Sayo, Ana Ria; Lazaro, Jezreel; Han, Su Myat; Celis, Alyannah C; Suzuki, Shuichi; Uichanco, Ann Celestyn; Sagurit, Jocelyn; Solante, Rontgene; +3 more... Yoshida, Lay-Myint; Ariyoshi, Koya; Smith, Chris; (2021) If Not COVID-19 What Is It? Analysis of COVID-19 versus Common Respiratory Viruses among Symptomatic Health Care Workers in a Tertiary Infectious Disease Referral Hospital in Manila, Philippines. Tropical Medicine and Infectious Disease, 6 (1). p. 39. DOI: https://doi.org/10.3390/tropicalmed6010039

Alasmari, Abrar; Houghton, Joanna; Greenwood, Brian; Heymann, David; Edwards, Phil; Larson, Heidi; Assiri, Abdullah; Ben-Rached, Fathia; Pain, Arnab; Behrens, Ron; +1 more... Bustinduy, Amaya; (2021) Meningococcal carriage among Hajj pilgrims, risk factors for carriage and records of vaccination: a study of pilgrims to Mecca. Tropical Medicine and International Health, 26 (4). pp. 453-461. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.13546

Allan, Simon; Adetifa, Ifedayo MO; Abbas, Kaja; (2021) Inequities in childhood immunisation coverage associated with socioeconomic, geographic, maternal, child, and place of birth characteristics in Kenya. BMC infectious diseases, 21 (1). 553-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-021-06271-9

Auzenbergs, Megan; Fountain, Holly; Macklin, Grace; Lyons, Hil; O'Reilly, Kathleen M; (2021) The impact of surveillance and other factors on detection of emergent and circulating vaccine derived polioviruses. Gates open research, 5. 94-. ISSN 2572-4754 DOI: https://doi.org/10.12688/gatesopenres.13272.3

Baker, Julia M; Hasso-Agopsowicz, Mateusz; Pitzer, Virginia E; Platts-Mills, James A; Peralta-Santos, Andre; Troja, Catherine; Archer, Helena; Guo, Boya; Sheahan, William; Lingappa, Jairam; +2 more... Jit, Mark; Lopman, Benjamin A; (2021) Association of enteropathogen detection with diarrhoea by age and high versus low child mortality settings: a systematic review and meta-analysis. The Lancet. Global health, 9 (10). e1402-e1410. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(21)00316-8

Beale, Mathew A; Marks, Michael; Cole, Michelle J; Lee, Min-Kuang; Pitt, Rachel; Ruis, Christopher; Balla, Eszter; Crucitti, Tania; Ewens, Michael; Fernández-Naval, Candela; +28 more... Grankvist, Anna; Guiver, Malcolm; Kenyon, Chris R; Khairullin, Rafil; Kularatne, Ranmini; Arando, Maider; Molini, Barbara J; Obukhov, Andrey; Page, Emma E; Petrovay, Fruzsina; Rietmeijer, Cornelis; Rowley, Dominic; Shokoples, Sandy; Smit, Erasmus; Sweeney, Emma L; Taiaroa, George; Vera, Jaime H; Wennerås, Christine; Whiley, David M; Williamson, Deborah A; Hughes, Gwenda; Naidu, Prenilla; Unemo, Magnus; Krajden, Mel; Lukehart, Sheila A; Morshed, Muhammad G; Fifer, Helen; Thomson, Nicholas R; (2021) Global phylogeny of Treponema pallidum lineages reveals recent expansion and spread of contemporary syphilis. Nature Microbiology, 6 (12). pp. 1549-1560. ISSN 2058-5276 DOI: https://doi.org/10.1038/s41564-021-01000-z

Benest, John; Rhodes, Sophie; Quaife, Matthew; Evans, Thomas G; White, Richard G; (2021) Optimising Vaccine Dose in Inoculation against SARS-CoV-2, a Multi-Factor Optimisation Modelling Study to Maximise Vaccine Safety and Efficacy. Vaccines, 9 (2). p. 78. DOI: https://doi.org/10.3390/vaccines9020078

Bhaskaran, Krishnan; Bacon, Sebastian; Evans, Stephen Jw; Bates, Chris J; Rentsch, Christopher T; MacKenna, Brian; Tomlinson, Laurie; Walker, Alex J; Schultze, Anna; Morton, Caroline E; +17 more... Grint, Daniel; Mehrkar, Amir; Eggo, Rosalind M; Inglesby, Peter; Douglas, Ian J; McDonald, Helen I; Cockburn, Jonathan; Williamson, Elizabeth J; Evans, David; Curtis, Helen J; Hulme, William J; Parry, John; Hester, Frank; Harper, Sam; Spiegelhalter, David; Smeeth, Liam; Goldacre, Ben; (2021) Factors associated with deaths due to COVID-19 versus other causes: population-based cohort analysis of UK primary care data and linked national death registrations within the OpenSAFELY platform. The Lancet regional health. Europe, 6. 100109-. ISSN 2666-7762 DOI: https://doi.org/10.1016/j.lanepe.2021.100109

Bhaskaran, Krishnan; Rentsch, Christopher T; MacKenna, Brian; Schultze, Anna; Mehrkar, Amir; Bates, Chris J; Eggo, Rosalind M; Morton, Caroline E; Bacon, Sebastian CJ; Inglesby, Peter; +15 more... Doughlas, Ian J; Walker, Alex J; McDonald, Helen; Cockburn, Jonathan; Williamson, Elizabeth J; Evans, David; Forbes, Harriet J; Curtis, Helen J; Hulme, William J; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; (2021) HIV infection and COVID-19 death: a population-based cohort analysis of UK primary care data and linked national death registrations within the OpenSAFELY platform. LANCET HIV, 8 (1). e24-e32. ISSN 2352-3018 DOI: https://doi.org/10.1016/S2352-3018(20)30305-2

Bhate, Ketaki; Lin, Liang-Yu; Barbieri, John S; Leyrat, Clémence; Hopkins, Susan; Stabler, Richard; Shallcross, Laura; Smeeth, Liam; Francis, Nick; Mathur, Rohini; +2 more... Langan, Sinéad M; Sinnott, Sarah-Jo; (2021) Is there an association between long-term antibiotics for acne and subsequent infection sequelae and antimicrobial resistance? A systematic review. British Journal of General Practice Open, 5 (3). BJGPO.2020.0181-. DOI: https://doi.org/10.3399/BJGPO.2020.0181

Bhate, Ketaki; Lin, Liang-Yu; Barbieri, John; Leyrat, Clémence; Hopkins, Susan; Stabler, Richard; Shallcross, Laura; Smeeth, Liam; Francis, Nick A; Mathur, Rohini; +2 more... Langan, Sinéad M; Sinnott, Sarah-Jo; (2021) Is there an association between long-term antibiotics for acne and subsequent infection sequelae and antimicrobial resistance? A systematic review protocol. BMJ open, 10 (7). e033662-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2019-033662

Bhatia, Sangeeta; Imai, Natsuko; Cuomo-Dannenburg, Gina; Baguelin, Marc; Boonyasiri, Adhiratha; Cori, Anne; Cucunubá, Zulma; Dorigatti, Ilaria; FitzJohn, Rich; Fu, Han; +17 more... Gaythorpe, Katy; Ghani, Azra; Hamlet, Arran; Hinsley, Wes; Laydon, Daniel; Nedjati-Gilani, Gemma; Okell, Lucy; Riley, Steven; Thompson, Hayley; van Elsland, Sabine; Volz, Erik; Wang, Haowei; Wang, Yuanrong; Whittaker, Charles; Xi, Xiaoyue; Donnelly, Christl A; Ferguson, Neil M; (2021) Estimating the number of undetected COVID-19 cases among travellers from mainland China. Wellcome Open Research, 5. p. 143. DOI: https://doi.org/10.12688/wellcomeopenres.15805.2

Biggs, Joseph R; Sy, Ava Kristy; Brady, Oliver J; Kucharski, Adam J; Funk, Sebastian; Tu, Yun-Hung; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Ashall, James; +8 more... Avelino, Ferchito L; Sucaldito, Nemia L; Tandoc, Amado O; Cutiongco-de la Paz, Eva; Capeding, Maria Rosario Z; Padilla, Carmencita D; Hibberd, Martin L; Hafalla, Julius Clemence R; (2021) Serological Evidence of Widespread Zika Transmission across the Philippines. Viruses, 13 (8). p. 1441. DOI: https://doi.org/10.3390/v13081441

Biggs, Joseph R; Sy, Ava Kristy; Sherratt, Katharine; Brady, Oliver J; Kucharski, Adam J; Funk, Sebastian; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Avelino, Ferchito L; +7 more... Sucaldito, Nemia L; Tandoc, Amado O; la Paz, Eva Cutiongco-de; Capeding, Maria Rosario Z; Padilla, Carmencita D; Hafalla, Julius Clemence R; Hibberd, Martin L; (2021) Estimating the annual dengue force of infection from the age of reporting primary infections across urban centres in endemic countries. BMC medicine, 19 (1). 217-. DOI: https://doi.org/10.1186/s12916-021-02101-6

Blassel, Luc; Zhukova, Anna; Villabona-Arenas, Christian J; Atkins, Katherine E; Hué, Stéphane; Gascuel, Olivier; (2021) Drug resistance mutations in HIV: new bioinformatics approaches and challenges. Current opinion in virology, 51. pp. 56-64. ISSN 1879-6257 DOI: https://doi.org/10.1016/j.coviro.2021.09.009

Bracher, J; Wolffram, D; Deuschel, J; Görgen, K; Ketterer, JL; Ullrich, A; Abbott, S; Barbarossa, MV; Bertsimas, D; Bhatia, S; +29 more... Bodych, M; Bosse, NI; Burgard, JP; Castro, L; Fairchild, G; Fuhrmann, J; Funk, S; Gogolewski, K; Gu, Q; Heyder, S; Hotz, T; Kheifetz, Y; Kirsten, H; Krueger, T; Krymova, E; Li, ML; Meinke, JH; Michaud, IJ; Niedzielewski, K; Ożański, T; Rakowski, F; Scholz, M; Soni, S; Srivastava, A; Zieliński, J; Zou, D; Gneiting, T; Schienle, M; List of Contributors by Team; List of Contributors by Team; (2021) A pre-registered short-term forecasting study of COVID-19 in Germany and Poland during the second wave. Nature communications, 12 (1). 5173-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-25207-0

Brady, Oliver J; Kucharski, Adam J; Funk, Sebastian; Jafari, Yalda; Loock, Marnix Van; Herrera-Taracena, Guillermo; Menten, Joris; Edmunds, W John; Sim, Shuzhen; Ng, Lee-Ching; +2 more... Hué, Stéphane; Hibberd, Martin L; (2021) Case-area targeted interventions (CATI) for reactive dengue control: Modelling effectiveness of vector control and prophylactic drugs in Singapore. PLoS neglected tropical diseases, 15 (8). e0009562-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0009562

Brady, Oliver; Wilder-Smith, Annelies; (2021) What Is the Impact of Lockdowns on Dengue? Current Infectious Disease Reports, 23 (2). 2-. ISSN 1523-3847 DOI: https://doi.org/10.1007/s11908-020-00744-9

Bui, David P; Chandran, Shruthi S; Oren, Eyal; Brown, Heidi E; Harris, Robin B; Knight, Gwenan M; Grandjean, Louis; (2021) Community transmission of multidrug-resistant tuberculosis is associated with activity space overlap in Lima, Peru. BMC infectious diseases, 21 (1). 275-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-021-05953-8

Butkeviciute, Egle; Prudden, Holly J; Jit, Mark; Smith, Peter G; Kang, Gagandeep; Riddle, Mark S; Lopman, Benjamin A; Pitzer, Virginia E; Lanata, Claudio F; Platts-Mills, James A; +3 more... Breiman, Robert F; Giersing, Birgitte K; Hasso-Agopsowicz, Mateusz; (2021) Global diarrhoea-associated mortality estimates and models in children: Recommendations for dataset and study selection. Vaccine, 39 (32). pp. 4391-4398. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2021.05.086

Calderwood, Claire J; Wilson, James P; Fielding, Katherine L; Harris, Rebecca C; Karat, Aaron S; Mansukhani, Raoul; Falconer, Jane; Bergstrom, Malin; Johnson, Sarah M; McCreesh, Nicky; +6 more... Monk, Edward JM; Odayar, Jasantha; Scott, Peter J; Stokes, Sarah A; Theodorou, Hannah; Moore, David AJ; (2021) Dynamics of sputum conversion during effective tuberculosis treatment: A systematic review and meta-analysis. PLoS medicine, 18 (4). e1003566-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1003566

Chandra, Nastassya L; Bolt, Hikaru; Dan-Nwafor, Chioma; Ipadeola, Oladipupo; Ilori, Elsie; Namara, Geoffrey; Olayinka, Adebola T; Ukponu, Winifred; Iniobong, Akanimo; Amedu, Michael; +10 more... Akano, Adejoke; Akabike, Kachikwulu O; Okhuarobo, Uwaifiokun; Fagbemi, Stephen; Sampson, Emeka; Newitt, Sophie; Verlander, Neville Q; Bausch, Daniel G; le Polain de Waroux, Olivier; Ihekweazu, Chikwe; (2021) Factors associated with delayed presentation to healthcare facilities for Lassa fever cases, Nigeria 2019: a retrospective cohort study. BMC Infectious Diseases, 21 (1). 143-. DOI: https://doi.org/10.1186/s12879-021-05822-4

Choisy, Marc; McBride, Angela; Chambers, Mary; Ho Quang, Chanh; Nguyen Quang, Huy; Xuan Chau, Nguyen Thi; Thi, Giang Nguyen; Bonell, Ana; Evans, Megan; Ming, Damien; +17 more... Ngo-Duc, Thanh; Quang Thai, Pham; Dang Giang, Duy Hoang; Dan Thanh, Ho Ngoc; Ngoc Nhung, Hoang; Lowe, Rachel; Maude, Richard; Elyazar, Iqbal; Surendra, Henry; Ashley, Elizabeth A; Thwaites, Louise; van Doorn, H Rogier; Kestelyn, Evelyne; Dondorp, Arjen M; Thwaites, Guy; Vinh Chau, Nguyen Van; Yacoub, Sophie; (2021) Climate change and health in Southeast Asia – defining research priorities and the role of the Wellcome Trust Africa Asia Programmes. Wellcome Open Research, 6. p. 278. DOI: https://doi.org/10.12688/wellcomeopenres.17263.1

Clarkson, MC; McQuaid, CF; Houben, RM; Kranzer, K; White, RG; (2021) Better data for country-level TB resource allocation are urgently required. The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease, 25 (8). pp. 662-664. ISSN 1027-3719 DOI: https://doi.org/10.5588/ijtld.20.0912

Clifford, Samuel; Quilty, Billy J; Russell, Timothy W; Liu, Yang; Chan, Yung-Wai D; Pearson, Carl AB; Eggo, Rosalind M; Endo, Akira; CMMID COVID-19 Working Group; Flasche, Stefan; +2 more... Edmunds, W John; Centre for Mathematical Modelling of Infectious Diseases (CMMID); CMMID COVID-19 Working Group, Centre for Mathematical Modelling of Infectious Diseases (CMMID); (2021) Strategies to reduce the risk of SARS-CoV-2 importation from international travellers: modelling estimations for the United Kingdom, July 2020. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 26 (39). ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2021.26.39.2001440

Collins, Julie; Westerveld, Rosie; Nelson, Kate A; Rohan, Hana; Bower, Hilary; Lazenby, Siobhan; Ikilezi, Gloria; Bartlein, Rebecca; Bausch, Daniel G; Kennedy, David S; (2021) "Learn from the lessons and don't forget them": Identifying transferable lessons for COVID-19 from meningitis A, yellow fever, and Ebola virus disease vaccination campaigns. BMJ Global Health, 6 (9). e006951. ISSN 2059-7908 DOI: https://doi.org/10.1101/2021.07.15.21260439

Collins, Julie; Westerveld, Rosie; Nelson, Kate A; Rohan, Hana; Bower, Hilary; Lazenby, Siobhan; Ikilezi, Gloria; Bartlein, Rebecca; Bausch, Daniel G; Kennedy, David S; (2021) 'Learn from the lessons and don't forget them': identifying transferable lessons for COVID-19 from meningitis A, yellow fever and Ebola virus disease vaccination campaigns. BMJ global health, 6 (9). e006951-e006951. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2021-006951 Item availability may be restricted.

Colson, Abigail R; Morton, Alec; Årdal, Christine; Chalkidou, Kalipso; Davies, Sally C; Garrison, Louis P; Jit, Mark; Laxminarayan, Ramanan; Megiddo, Itamar; Morel, Chantal; +7 more... Nonvignon, Justice; Outterson, Kevin; Rex, John H; Sarker, Abdur Razzaque; Sculpher, Mark; Woods, Beth; Xiao, Yue; (2021) Antimicrobial Resistance: Is Health Technology Assessment Part of the Solution or Part of the Problem? Value in Health, 24 (12). pp. 1828-1834. ISSN 1098-3015 DOI: https://doi.org/10.1016/j.jval.2021.06.002

Colón-González, Felipe J; Sewe, Maquins Odhiambo; Tompkins, Adrian M; Sjödin, Henrik; Casallas, Alejandro; Rocklöv, Joacim; Caminade, Cyril; Lowe, Rachel; (2021) Projecting the risk of mosquito-borne diseases in a warmer and more populated world: a multi-model, multi-scenario intercomparison modelling study. The Lancet. Planetary health, 5 (7). e404-e414. ISSN 2542-5196 DOI: https://doi.org/10.1016/S2542-5196(21)00132-7

Colón-González, Felipe J; Soares Bastos, Leonardo; Hofmann, Barbara; Hopkin, Alison; Harpham, Quillon; Crocker, Tom; Amato, Rosanna; Ferrario, Iacopo; Moschini, Francesca; James, Samuel; +10 more... Malde, Sajni; Ainscoe, Eleanor; Sinh Nam, Vu; Quang Tan, Dang; Duc Khoa, Nguyen; Harrison, Mark; Tsarouchi, Gina; Lumbroso, Darren; Brady, Oliver J; Lowe, Rachel; (2021) Probabilistic seasonal dengue forecasting in Vietnam: A modelling study using superensembles. PLoS medicine, 18 (3). e1003542-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1003542

Coughlan de Perez, Erin; Stephens, Elisabeth; van Aalst, Maarten; Bazo, Juan; Fournier-Tombs, Eleonore; Funk, Sebastian; Hess, Jeremy J; Ranger, Nicola; Lowe, Rachel; (2021) Epidemiological versus meteorological forecasts: Best practice for linking models to policymaking. International Journal of Forecasting, 38 (2). pp. 521-526. ISSN 0169-2070 DOI: https://doi.org/10.1016/j.ijforecast.2021.08.003

Crellen, Thomas; Pi, Li; Davis, Emma L; Pollington, Timothy M; Lucas, Tim CD; Ayabina, Diepreye; Borlase, Anna; Toor, Jaspreet; Prem, Kiesha; Medley, Graham F; +2 more... Klepac, Petra; Déirdre Hollingsworth, T; (2021) Dynamics of SARS-CoV-2 with waning immunity in the UK population. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 376 (1829). 20200274-. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2020.0274

Cromwell, Elizabeth A; Osborne, Joshua CP; Unnasch, Thomas R; Basáñez, Maria-Gloria; Gass, Katherine M; Barbre, Kira A; Hill, Elex; Johnson, Kimberly B; Donkers, Katie M; Shirude, Shreya; +214 more... Schmidt, Chris A; Adekanmbi, Victor; Adetokunboh, Olatunji O; Afarideh, Mohsen; Ahmadpour, Ehsan; Ahmed, Muktar Beshir; Akalu, Temesgen Yihunie; Al-Aly, Ziyad; Alanezi, Fahad Mashhour; Alanzi, Turki M; Alipour, Vahid; Andrei, Catalina Liliana; Ansari, Fereshteh; Ansha, Mustafa Geleto; Anvari, Davood; Appiah, Seth Christopher Yaw; Arabloo, Jalal; Arnold, Benjamin F; Ausloos, Marcel; Ayanore, Martin Amogre; Baig, Atif Amin; Banach, Maciej; Barac, Aleksandra; Bärnighausen, Till Winfried; Bayati, Mohsen; Bhattacharyya, Krittika; Bhutta, Zulfiqar A; Bibi, Sadia; Bijani, Ali; Bohlouli, Somayeh; Bohluli, Mahdi; Brady, Oliver J; Bragazzi, Nicola Luigi; Butt, Zahid A; Carvalho, Felix; Chatterjee, Souranshu; Chattu, Vijay Kumar; Chattu, Soosanna Kumary; Cormier, Natalie Maria; Dahlawi, Saad MA; Damiani, Giovanni; Daoud, Farah; Darwesh, Aso Mohammad; Daryani, Ahmad; Deribe, Kebede; Dharmaratne, Samath Dhamminda; Diaz, Daniel; Do, Hoa Thi; El Sayed Zaki, Maysaa; El Tantawi, Maha; Elemineh, Demelash Abewa; Faraj, Anwar; Fasihi Harandi, Majid; Fatahi, Yousef; Feigin, Valery L; Fernandes, Eduarda; Foigt, Nataliya A; Foroutan, Masoud; Franklin, Richard Charles; Gubari, Mohammed Ibrahim Mohialdeen; Guido, Davide; Guo, Yuming; Haj-Mirzaian, Arvin; Hamagharib Abdullah, Kanaan; Hamidi, Samer; Herteliu, Claudiu; Hidru, Hagos Degefa de; Higazi, Tarig B; Hossain, Naznin; Hosseinzadeh, Mehdi; Househ, Mowafa; Ilesanmi, Olayinka Stephen; Ilic, Milena D; Ilic, Irena M; Iqbal, Usman; Irvani, Seyed Sina Naghibi; Jha, Ravi Prakash; Joukar, Farahnaz; Jozwiak, Jacek Jerzy; Kabir, Zubair; Kalankesh, Leila R; Kalhor, Rohollah; Karami Matin, Behzad; Karimi, Salah Eddin; Kasaeian, Amir; Kavetskyy, Taras; Kayode, Gbenga A; Kazemi Karyani, Ali; Kelbore, Abraham Getachew; Keramati, Maryam; Khalilov, Rovshan; Khan, Ejaz Ahmad; Khan, Md Nuruzzaman Nuruzzaman; Khatab, Khaled; Khater, Mona M; Kianipour, Neda; Kibret, Kelemu Tilahun; Kim, Yun Jin; Kosen, Soewarta; Krohn, Kris J; Kusuma, Dian; La Vecchia, Carlo; Lansingh, Van Charles; Lee, Paul H; LeGrand, Kate E; Li, Shanshan; Longbottom, Joshua; Magdy Abd El Razek, Hassan; Magdy Abd El Razek, Muhammed; Maleki, Afshin; Mamun, Abdullah A; Manafi, Ali; Manafi, Navid; Mansournia, Mohammad Ali; Martins-Melo, Francisco Rogerlândio; Mazidi, Mohsen; McAlinden, Colm; Meharie, Birhanu Geta; Mendoza, Walter; Mengesha, Endalkachew Worku; Mengistu, Desalegn Tadese; Mereta, Seid Tiku; Mestrovic, Tomislav; Miller, Ted R; Miri, Mohammad; Moghadaszadeh, Masoud; Mohammadian-Hafshejani, Abdollah; Mohammadpourhodki, Reza; Mohammed, Shafiu; Mohammed, Salahuddin; Moradi, Masoud; Moradzadeh, Rahmatollah; Moraga, Paula; Mosser, Jonathan F; Naderi, Mehdi; Nagarajan, Ahamarshan Jayaraman; Naik, Gurudatta; Negoi, Ionut; Nguyen, Cuong Tat; Nguyen, Huong Lan Thi; Nguyen, Trang Huyen; Nikbakhsh, Rajan; Oancea, Bogdan; Olagunju, Tinuke O; Olagunju, Andrew T; Omar Bali, Ahmed; Onwujekwe, Obinna E; Pana, Adrian; Pourjafar, Hadi; Rahim, Fakher; Rahman, Mohammad Hifz Ur; Rathi, Priya; Rawaf, Salman; Rawaf, David Laith; Rawassizadeh, Reza; Resnikoff, Serge; Reta, Melese Abate; Rezapour, Aziz; Rubagotti, Enrico; Rubino, Salvatore; Sadeghi, Ehsan; Saghafipour, Abedin; Sajadi, S Mohammad; Samy, Abdallah M; Sarmiento-Suárez, Rodrigo; Sawhney, Monika; Schipp, Megan F; Shaheen, Amira A; Shaikh, Masood Ali; Shamsizadeh, Morteza; Sharafi, Kiomars; Sheikh, Aziz; Shetty, B Suresh Kumar; Shin, Jae Il; Shivakumar, KM; Simonetti, Biagio; Singh, Jasvinder A; Skiadaresi, Eirini; Soheili, Amin; Soltani, Shahin; Spurlock, Emma Elizabeth; Sufiyan, Mu'awiyyah Babale; Tabuchi, Takahiro; Tapak, Leili; Thompson, Robert L; Thomson, Alan J; Traini, Eugenio; Tran, Bach Xuan; Ullah, Irfan; Ullah, Saif; Uneke, Chigozie Jesse; Unnikrishnan, Bhaskaran; Uthman, Olalekan A; Vinkeles Melchers, Natalie VS; Violante, Francesco S; Wolde, Haileab Fekadu; Wonde, Tewodros Eshete; Yamada, Tomohide; Yaya, Sanni; Yazdi-Feyzabadi, Vahid; Yip, Paul; Yonemoto, Naohiro; Yousof, Hebat-Allah Salah A; Yu, Chuanhua; Yu, Yong; Yusefzadeh, Hasan; Zaki, Leila; Zaman, Sojib Bin; Zamanian, Maryam; Zhang, Zhi-Jiang; Zhang, Yunquan; Ziapour, Arash; Hay, Simon I; Pigott, David M; (2021) Predicting the environmental suitability for onchocerciasis in Africa as an aid to elimination planning. PLoS neglected tropical diseases, 15 (7). e0008824-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0008824

Curtis, Helen J; Inglesby, Peter; Morton, Caroline E; MacKenna, Brian; Green, Amelia; Hulme, William; Walker, Alex J; Morley, Jessica; Mehrkar, Amir; Bacon, Seb; +36 more... Hickman, George; Bates, Chris; Croker, Richard; Evans, David; Ward, Tom; Cockburn, Jonathan; Davy, Simon; Bhaskaran, Krishnan; Schultze, Anna; Rentsch, Christopher T; Williamson, Elizabeth J; Rowan, Anna; Fisher, Louis; McDonald, Helen I; Tomlinson, Laurie; Mathur, Rohini; Drysdale, Henry; Eggo, Rosalind M; Wing, Kevin; Wong, Angel Ys; Forbes, Harriet; Parry, John; Hester, Frank; Harper, Sam; O'Hanlon, Shaun; Eavis, Alex; Jarvis, Richard; Avramov, Dima; Griffiths, Paul; Fowles, Aaron; Parkes, Nasreen; Douglas, Ian J; Evans, Stephen Jw; Smeeth, Liam; Goldacre, Ben; (The OpenSAFELY Collaborative); (The OpenSAFELY Collaborative); (2021) Trends and clinical characteristics of COVID-19 vaccine recipients: a federated analysis of 57.9 million patients’ primary care records in situ using OpenSAFELY. Br J Gen Pract, 72 (714). e51-e62. ISSN 0960-1643 DOI: https://doi.org/10.3399/BJGP.2021.0376

Curtis, Helen J; MacKenna, Brian; Croker, Richard; Inglesby, Peter; Walker, Alex J; Morley, Jessica; Mehrkar, Amir; Morton, Caroline E; Bacon, Seb; Hickman, George; +26 more... Bates, Chris; Evans, David; Ward, Tom; Cockburn, Jonathan; Davy, Simon; Bhaskaran, Krishnan; Schultze, Anna; Rentsch, Christopher T; Williamson, Elizabeth J; Hulme, William J; McDonald, Helen I; Tomlinson, Laurie; Mathur, Rohini; Drysdale, Henry; Eggo, Rosalind M; Wing, Kevin; Wong, Angel Ys; Forbes, Harriet; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Douglas, Ian J; Smeeth, Liam; Goldacre, Ben; (The OpenSAFELY Collaborative); The OpenSAFELY Collaborative; (2021) OpenSAFELY NHS Service Restoration Observatory 1: primary care clinical activity in England during the first wave of COVID-19. The British journal of general practice : the journal of the Royal College of General Practitioners, 72 (714). e63-e74. ISSN 0960-1643 DOI: https://doi.org/10.3399/BJGP.2021.0380

Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; +15 more... Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; CMMID COVID-19 Working Group; COVID-19 Genomics UK (COG-UK) Consortium; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John; (2021) Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. Science (New York, N.Y.), 372 (6538). 149-+. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.abg3055

Davies, Nicholas G; Flasche, Stefan; Jit, Mark; Atkins, Katherine E; (2021) Modeling the effect of vaccination on selection for antibiotic resistance in Streptococcus pneumonia e. Science translational medicine, 13 (606). eaaz8690-eaaz8690. ISSN 1946-6234 DOI: https://doi.org/10.1126/scitranslmed.aaz8690

Davies, Nicholas G; Jarvis, Christopher I; CMMID COVID-19 Working Group; Edmunds, W John; Jewell, Nicholas P; Diaz-Ordaz, Karla; Keogh, Ruth H; (2021) Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. Nature, 593 (7858). pp. 270-274. ISSN 0028-0836 DOI: https://doi.org/10.1038/s41586-021-03426-1

Davis, Emma L; Lucas, Tim CD; Borlase, Anna; Pollington, Timothy M; Abbott, Sam; Ayabina, Diepreye; Crellen, Thomas; Hellewell, Joel; Pi, Li; CMMID COVID-19 Working Group; +3 more... Medley, Graham F; Hollingsworth, T Déirdre; Klepac, Petra; CMMID COVID-19 Working Group; (2021) Contact tracing is an imperfect tool for controlling COVID-19 transmission and relies on population adherence. Nature communications, 12 (1). 5412-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-25531-5

Dicks, Frederika; Marks, Tatjana; Karafillakis, Emilie; Chambers, Mark A; (2021) Vaccination as a Control Tool in Bovine Tuberculosis: Social Media Monitoring to Assess Public Response to Government Policy Development and Implementation. Vaccines, 9 (4). p. 314. DOI: https://doi.org/10.3390/vaccines9040314

Docherty, Annemarie B; Mulholland, Rachel H; Lone, Nazir I; Cheyne, Christopher P; De Angelis, Daniela; Diaz-Ordaz, Karla; Donegan, Cara; Drake, Thomas M; Dunning, Jake; Funk, Sebastian; +20 more... García-Fiñana, Marta; Girvan, Michelle; Hardwick, Hayley E; Harrison, Janet; Ho, Antonia; Hughes, David M; Keogh, Ruth H; Kirwan, Peter D; Leeming, Gary; Nguyen Van-Tam, Jonathan S; Pius, Riinu; Russell, Clark D; Spencer, Rebecca G; Tom, Brian Dm; Turtle, Lance; Openshaw, Peter Jm; Baillie, J Kenneth; Harrison, Ewen M; Semple, Malcolm G; ISARIC4C Investigators; ISARIC4C Investigators; (2021) Changes in in-hospital mortality in the first wave of COVID-19: a multicentre prospective observational cohort study using the WHO Clinical Characterisation Protocol UK. The Lancet. Respiratory medicine, 9 (7). pp. 773-785. ISSN 2213-2600 DOI: https://doi.org/10.1016/S2213-2600(21)00175-2

Drolet, Mélanie; Laprise, Jean-François; Martin, Dave; Jit, Mark; Bénard, Élodie; Gingras, Guillaume; Boily, Marie-Claude; Alary, Michel; Baussano, Iacopo; Hutubessy, Raymond; +1 more... Brisson, Marc; (2021) Optimal human papillomavirus vaccination strategies to prevent cervical cancer in low-income and middle-income countries in the context of limited resources: a mathematical modelling analysis. The Lancet. Infectious diseases, 21 (11). pp. 1598-1610. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(20)30860-4

de Vos, Anneke S; de Vlas, Sake J; Lindsay, Jodi A; Kretzschmar, Mirjam EE; Knight, Gwenan M; (2021) Understanding MRSA clonal competition within a UK hospital; the possible importance of density dependence. Epidemics, 37. 100511-. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2021.100511

Eggo, Rosalind M; Dawa, Jeanette; Kucharski, Adam J; Cucunuba, Zulma M; (2021) The importance of local context in COVID-19 models. Nature Computational Science, 1 (1). pp. 6-8. ISSN 2662-8457 DOI: https://doi.org/10.1038/s43588-020-00014-7

Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J; (2021) Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. Wellcome Open Research, 5. 239-. DOI: https://doi.org/10.12688/wellcomeopenres.16344.3

Endo, Akira; Uchida, Mitsuo; Hayashi, Naoki; Liu, Yang; Atkins, Katherine E; Kucharski, Adam J; Funk, Sebastian; (2021) Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan. Proc Natl Acad Sci U S A, 118 (46). e2112605118-e2112605118. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.2112605118

Fearon, Elizabeth; Buchan, Iain E; Das, Rajenki; Davis, Emma L; Fyles, Martyn; Hall, Ian; Hollingsworth, T Deirdre; House, Thomas; Jay, Caroline; Medley, Graham F; +5 more... Pellis, Lorenzo; Quilty, Billy J; Silva, Miguel EP; Stage, Helena B; Wingfield, Tom; (2021) SARS-CoV-2 antigen testing: weighing the false positives against the costs of failing to control transmission. Lancet Respiratory Medicine, 9 (7). pp. 685-687. ISSN 2213-2600 DOI: https://doi.org/10.1016/S2213-2600(21)00234-4

Fischer, Natalie; Darmstadt, Gary L; Shahunja, KM; Crowther, Jonathan M; Kendall, Lindsay; Gibson, Rachel A; Ahmed, Tahmeed; Relman, David A; (2021) Topical emollient therapy with sunflower seed oil alters the skin microbiota of young children with severe acute malnutrition in Bangladesh: A randomised, controlled study. Journal of global health, 11. 04047. ISSN 2047-2978 DOI: https://doi.org/10.7189/jogh.11.04047

Fischer, Natalie; Dauby, Nicolas; Bossuyt, Nathalie; Reynders, Marijke; Gérard, Michèle; Lacor, Patrick; Daelemans, Siel; Lissoir, Bénédicte; Holemans, Xavier; Magerman, Koen; +8 more... Jouck, Door; Bourgeois, Marc; Delaere, Bénédicte; Quoilin, Sophie; Van Gucht, Steven; Thomas, Isabelle; Barbezange, Cyril; Subissi, Lorenzo; (2021) Monitoring of human coronaviruses in Belgian primary care and hospitals, 2015-20: a surveillance study. The Lancet. Microbe, 2 (3). e105-e114. ISSN 2666-5247 DOI: https://doi.org/10.1016/S2666-5247(20)30221-4

Flaherty, Katelyn E; Grembi, Jessica A; Ramachandran, Vasavi V; Haque, Farhana; Khatun, Selina; Rahman, Mahmudu; Maples, Stace; Becker, Torben K; Spormann, Alfred M; Schoolnik, Gary K; +2 more... Hryckowian, Andrew J; Nelson, Eric J; (2021) High-throughput low-cost nl-qPCR for enteropathogen detection: A proof-of-concept among hospitalized patients in Bangladesh. PloS One, 16 (10). e0257708-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0257708

Fletcher, Isabel K; Stewart-Ibarra, Anna M; García-Díez, Markel; Shumake-Guillemot, Joy; Lowe, Rachel; (2021) Climate services for health: From global observations to local interventions. Med, 2 (4). pp. 355-361. ISSN 2666-6340 DOI: https://doi.org/10.1016/j.medj.2021.03.010

Forbes, Harriet; Morton, Caroline E; Bacon, Seb; McDonald, Helen I; Minassian, Caroline; Brown, Jeremy P; Rentsch, Christopher T; Mathur, Rohini; Schultze, Anna; DeVito, Nicholas J; +25 more... MacKenna, Brian; Hulme, William J; Croker, Richard; Walker, Alex J; Williamson, Elizabeth J; Bates, Chris; Mehrkar, Amir; Curtis, Helen J; Evans, David; Wing, Kevin; Inglesby, Peter; Drysdale, Henry; Wong, Angel YS; Cockburn, Jonathan; McManus, Robert; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Smeeth, Liam; Evans, Stephen JW; Bhaskaran, Krishnan; Eggo, Rosalind M; Goldacre, Ben; Tomlinson, Laurie A; (2021) Association between living with children and outcomes from covid-19: OpenSAFELY cohort study of 12 million adults in England. BMJ: British Medical Journal, 372. n628-. ISSN 1759-2151 DOI: https://doi.org/10.1136/bmj.n628

Forman, Rebecca; Shah, Soleil; Jeurissen, Patrick; Jit, Mark; Mossialos, Elias; (2021) COVID-19 vaccine challenges: What have we learned so far and what remains to be done? Health policy (Amsterdam, Netherlands), 125 (5). pp. 553-567. ISSN 0168-8510 DOI: https://doi.org/10.1016/j.healthpol.2021.03.013

Fu, Han; Abbas, Kaja; Klepac, Petra; van Zandvoort, Kevin; Tanvir, Hira; Portnoy, Allison; Jit, Mark; (2021) Effect of evidence updates on key determinants of measles vaccination impact: a DynaMICE modelling study in ten high-burden countries. BMC Medicine, 19 (1). 281-. DOI: https://doi.org/10.1186/s12916-021-02157-4

Fu, Han; Lewnard, Joseph A; Frost, Isabel; Laxminarayan, Ramanan; Arinaminpathy, Nimalan; (2021) Modelling the global burden of drug-resistant tuberculosis avertable by a post-exposure vaccine. Nat Commun, 12 (1). 424-. DOI: https://doi.org/10.1038/s41467-020-20731-x

Fu, Han; Wang, Haowei; Xi, Xiaoyue; Boonyasiri, Adhiratha; Wang, Yuanrong; Hinsley, Wes; Fraser, Keith J; McCabe, Ruth; Olivera Mesa, Daniela; Skarp, Janetta; +51 more... Ledda, Alice; Dewé, Tamsin; Dighe, Amy; Winskill, Peter; van Elsland, Sabine L; Ainslie, Kylie EC; Baguelin, Marc; Bhatt, Samir; Boyd, Olivia; Brazeau, Nicholas F; Cattarino, Lorenzo; Charles, Giovanni; Coupland, Helen; Cucunuba, Zulma M; Cuomo-Dannenburg, Gina; Donnelly, Christl A; Dorigatti, Ilaria; Eales, Oliver D; FitzJohn, Richard G; Flaxman, Seth; Gaythorpe, Katy AM; Ghani, Azra C; Green, William D; Hamlet, Arran; Hauck, Katharina; Haw, David J; Jeffrey, Benjamin; Laydon, Daniel J; Lees, John A; Mellan, Thomas; Mishra, Swapnil; Nedjati-Gilani, Gemma; Nouvellet, Pierre; Okell, Lucy; Parag, Kris V; Ragonnet-Cronin, Manon; Riley, Steven; Schmit, Nora; Thompson, Hayley A; Unwin, H Juliette T; Verity, Robert; Vollmer, Michaela AC; Volz, Erik; Walker, Patrick GT; Walters, Caroline E; Watson, Oliver J; Whittaker, Charles; Whittles, Lilith K; Imai, Natsuko; Bhatia, Sangeeta; Ferguson, Neil M; (2021) Database of epidemic trends and control measures during the first wave of COVID-19 in mainland China. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 102. pp. 463-471. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2020.10.075

Gaskell, Katherine M; Johnson, Marina; Gould, Victoria; Hunt, Adam; Stone, Neil RH; Waites, William; Kasstan, Ben; Chantler, Tracey; Lal, Sham; Roberts, Chrissy H; +3 more... Goldblatt, David; Eggo, Rosalind M; Marks, Michael; (2021) Extremely high SARS-CoV-2 seroprevalence in a strictly-Orthodox Jewish community in the UK. medRxiv preprint. ISSN 1468-5833 DOI: https://doi.org/10.1101/2021.02.01.21250839

Gaskell, Katherine M; Johnson, Marina; Gould, Victoria; Hunt, Adam; Stone, Neil Rh; Waites, William; Kasstan, Ben; Chantler, Tracey; Lal, Sham; Roberts, Chrissy H; +3 more... Goldblatt, David; Eggo, Rosalind M; Marks, Michael; (2021) SARS-CoV-2 seroprevalence in a strictly-Orthodox Jewish community in the UK: A retrospective cohort study. The Lancet Regional Health - Europe, 6. 100127-. ISSN 2666-7762 DOI: https://doi.org/10.1016/j.lanepe.2021.100127

Gaythorpe, Katy Am; Abbas, Kaja; Huber, John; Karachaliou, Andromachi; Thakkar, Niket; Woodruff, Kim; Li, Xiang; Echeverria-Londono, Susy; VIMC Working Group on COVID-19 Impact on Vaccine Preventable Dis; Ferrari, Matthew; +5 more... Jackson, Michael L; McCarthy, Kevin; Perkins, T Alex; Trotter, Caroline; Jit, Mark; (2021) Impact of COVID-19-related disruptions to measles, meningococcal A, and yellow fever vaccination in 10 countries. eLife, 10. DOI: https://doi.org/10.7554/eLife.67023

Geidelberg, Lily; Boyd, Olivia; Jorgensen, David; Siveroni, Igor; Nascimento, Fabrícia F; Johnson, Robert; Ragonnet-Cronin, Manon; Fu, Han; Wang, Haowei; Xi, Xiaoyue; +12 more... Chen, Wei; Liu, Dehui; Chen, Yingying; Tian, Mengmeng; Tan, Wei; Zai, Junjie; Sun, Wanying; Li, Jiandong; Li, Junhua; Volz, Erik M; Li, Xingguang; Nie, Qing; (2021) Genomic epidemiology of a densely sampled COVID-19 outbreak in China. Virus Evolution, 7 (1). veaa102-. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/veaa102

Gibbs, Hamish; Nightingale, Emily; Liu, Yang; Cheshire, James; Danon, Leon; Smeeth, Liam; Pearson, Carl AB; Grundy, Chris; LSHTM CMMID COVID-19 working group; Kucharski, Adam J; +1 more... Eggo, Rosalind M; LSHTM CMMID COVID-19 working group; (2021) Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19. PLoS computational biology, 17 (7). e1009162-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1009162

Gonçalves, Bronner P; Procter, Simon R; Clifford, Sam; Koukounari, Artemis; Paul, Proma; Lewin, Alexandra; Jit, Mark; Lawn, Joy; (2021) Estimation of country-level incidence of early-onset invasive Group B Streptococcus disease in infants using Bayesian methods. PLoS computational biology, 17 (6). e1009001-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1009001

Gostic, Katelyn M; McGough, Lauren; Baskerville, Edward B; Abbott, Sam; Joshi, Keya; Tedijanto, Christine; Kahn, Rebecca; Niehus, Rene; Hay, James A; De Salazar, Pablo M; +15 more... Hellewell, Joel; Meakin, Sophie; Munday, James D; Bosse, Nikos I; Sherrat, Katharine; Thompson, Robin N; White, Laura F; Huisman, Jana S; Scire, Jérémie; Bonhoeffer, Sebastian; Stadler, Tanja; Wallinga, Jacco; Funk, Sebastian; Lipsitch, Marc; Cobey, Sarah; (2021) Correction: Practical considerations for measuring the effective reproductive number, Rt. PLoS Computational Biology, 17 (12). e1009679-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1009679 Item availability may be restricted.

Grillet, Maria Eugenia; Moreno, Jorge E; Hernández-Villena, Juan V; Vincenti-González, Maria F; Noya, Oscar; Tami, Adriana; Paniz-Mondolfi, Alberto; Llewellyn, Martin; Lowe, Rachel; Escalante, Ananías A; +1 more... Conn, Jan E; (2021) Malaria in Southern Venezuela: The hottest hotspot in Latin America. PLoS neglected tropical diseases, 15 (1). e0008211-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0008211

Grint, Daniel J; Wing, Kevin; Houlihan, Catherine; Gibbs, Hamish P; Evans, Stephen JW; Williamson, Elizabeth; McDonald, Helen I; Bhaskaran, Krishnan; Evans, David; Walker, Alex J; +27 more... Hickman, George; Nightingale, Emily; Schultze, Anna; Rentsch, Christopher T; Bates, Chris; Cockburn, Jonathan; Curtis, Helen J; Morton, Caroline E; Bacon, Sebastian; Davy, Simon; Wong, Angel YS; Mehrkar, Amir; Tomlinson, Laurie; Douglas, Ian J; Mathur, Rohini; MacKenna, Brian; Ingelsby, Peter; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; DeVito, Nicholas J; Hulme, Will; Tazare, John; Smeeth, Liam; Goldacre, Ben; Eggo, Rosalind M; (2021) Severity of Severe Acute Respiratory System Coronavirus 2 (SARS-CoV-2) Alpha Variant (B.1.1.7) in England. Clinical infectious diseases, 75 (1). e1120-e1127. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciab754

Grint, Daniel J; Wing, Kevin; Williamson, Elizabeth; McDonald, Helen I; Bhaskaran, Krishnan; Evans, David; Evans, Stephen Jw; Walker, Alex J; Hickman, George; Nightingale, Emily; +26 more... Schultze, Anna; Rentsch, Christopher T; Bates, Chris; Cockburn, Jonathan; Curtis, Helen J; Morton, Caroline E; Bacon, Sebastian; Davy, Simon; Wong, Angel Ys; Mehrkar, Amir; Tomlinson, Laurie; Douglas, Ian J; Mathur, Rohini; Blomquist, Paula; MacKenna, Brian; Ingelsby, Peter; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; DeVito, Nicholas J; Hulme, Will; Tazare, John; Goldacre, Ben; Smeeth, Liam; Eggo, Rosalind M; (2021) Case fatality risk of the SARS-CoV-2 variant of concern B.1.1.7 in England, 16 November to 5 February. Eurosurveillance, 26 (11). pp. 10-15. ISSN 1025-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2021.26.11.2100256

Han, Su Myat; Por, Ir; Samley, Keo; Bunreth, Voeurng; Smith, Chris; Ariyoshi, Koya; Dousset, Jean-Philippe; Le Paih, Mickael; (2021) Costing analysis of field implementation of hepatitis C case detection in rural Maung Russey operational district, Cambodia. Western Pacific Surveillance and Response, 12 (3). pp. 17-24. ISSN 2094-7321 DOI: https://doi.org/10.5365/wpsar.2020.11.3.006

Hasso-Agopsowicz, Mateusz; Lopman, Benjamin A; Lanata, Claudio F; Rogawski McQuade, Elizabeth T; Kang, Gagandeep; Prudden, Holly J; Khalil, Ibrahim; Platts-Mills, James A; Kotloff, Karen; Jit, Mark; +6 more... Riddle, Mark S; Pavlinac, Patricia B; Luz, Paula M; Pitzer, Virginia E; Breiman, Robert F; Giersing, Birgitte K; (2021) World Health Organization Expert Working Group: Recommendations for assessing morbidity associated with enteric pathogens. Vaccine, 39 (52). pp. 7521-7525. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2021.11.033

Hellewell, Joel; Russell, Timothy W; SAFER Investigators and Field Study Team; Crick COVID-19 Consortium; CMMID COVID-19 working group; Beale, Rupert; Kelly, Gavin; Houlihan, Catherine; Nastouli, Eleni; Kucharski, Adam J; (2021) Estimating the effectiveness of routine asymptomatic PCR testing at different frequencies for the detection of SARS-CoV-2 infections. BMC medicine, 19 (1). 106-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-021-01982-x

Henderson, Alasdair D; Kama, Mike; Aubry, Maite; Hue, Stephane; Teissier, Anita; Naivalu, Taina; Bechu, Vinaisi D; Kailawadoko, Jimaima; Rabukawaqa, Isireli; Sahukhan, Aalisha; +9 more... Hibberd, Martin L; Nilles, Eric J; Funk, Sebastian; Whitworth, Jimmy; Watson, Conall H; Lau, Colleen L; Edmunds, W John; Cao-Lormeau, Van-Mai; Kucharski, Adam J; (2021) Interactions between timing and transmissibility explain diverse flavivirus dynamics in Fiji. Nature communications, 12 (1). 1671-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-21788-y

Hodgson, David; Flasche, Stefan; Jit, Mark; Kucharski, Adam J; CMMID COVID-19 Working Group; Centre for Mathematical Modelling of Infectious Disease (CMMID) ; (2021) The potential for vaccination-induced herd immunity against the SARS-CoV-2 B.1.1.7 variant. Eurosurveillance, 26 (20). ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2021.26.20.2100428

Hong, Pei-Ying; Rachmadi, Andri Taruna; Mantilla-Calderon, David; Alkahtani, Mohsen; Bashawri, Yasir M; Al Qarni, Hamed; O'Reilly, Kathleen M; Zhou, Jianqiang; (2021) Estimating the minimum number of SARS-CoV-2 infected cases needed to detect viral RNA in wastewater: To what extent of the outbreak can surveillance of wastewater tell us? Environmental research, 195. 110748-. ISSN 0013-9351 DOI: https://doi.org/10.1016/j.envres.2021.110748

Horváth-Puhó, Erzsébet; Snoek, Linde; van Kassel, Merel N; Gonçalves, Bronner P; Chandna, Jaya; Procter, Simon R; van de Beek, Diederik; de Gier, Brechje; van der Ende, Arie; Sørensen, Henrik T; +3 more... Lawn, Joy E; Bijlsma, Merijn W; GBS Danish and Dutch Collaborative Group for Long-term Outcomes; GBS Danish and Dutch collaborative group for long term outcomes; (2021) Prematurity Modifies the Risk of Long-term Neurodevelopmental Impairments After Invasive Group B Streptococcus Infections During Infancy in Denmark and the Netherlands. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 74 (Suppl_). S44-S53. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciab774 Item availability may be restricted.

Horváth-Puhó, Erzsébet; van Kassel, Merel N; Gonçalves, Bronner P; de Gier, Brechje; Procter, Simon R; Paul, Proma; van der Ende, Arie; Søgaard, Kirstine K; Hahné, Susan JM; Chandna, Jaya; +6 more... Schrag, Stephanie J; van de Beek, Diederik; Jit, Mark; Sørensen, Henrik T; Bijlsma, Merijn W; Lawn, Joy E; (2021) Mortality, neurodevelopmental impairments, and economic outcomes after invasive group B streptococcal disease in early infancy in Denmark and the Netherlands: a national matched cohort study. The Lancet. Child & adolescent health, 5 (6). pp. 398-407. ISSN 2352-4642 DOI: https://doi.org/10.1016/S2352-4642(21)00022-5

Hou, Zhiyuan; Tong, Yixin; Du, Fanxing; Lu, Linyao; Zhao, Sihong; Yu, Kexin; Piatek, Simon J; Larson, Heidi J; Lin, Leesa; (2021) Assessing COVID-19 Vaccine Hesitancy, Confidence, and Public Engagement: A Global Social Listening Study. Journal of medical Internet research, 23 (6). e27632-. ISSN 1439-4456 DOI: https://doi.org/10.2196/27632

Idris, Israel Oluwaseyidayo; Obwoya, Justin Geno; Tapkigen, Janet; Lamidi, Serifu Ayobami; Ochagu, Victor A; Abbas, Kaja; (2021) Impact evaluation of immunisation service integration to nutrition programmes and paediatric outpatient departments of primary healthcare centres in Rumbek East and Rumbek Centre counties of South Sudan. Family Medicine and Community Health, 9 (3). e001034-e001034. ISSN 2305-6983 DOI: https://doi.org/10.1136/fmch-2021-001034

Ishola, David; Manno, Daniela; Afolabi, Muhammed O; Keshinro, Babajide; Bockstal, Viki; Rogers, Baimba; Owusu-Kyei, Kwabena; Serry-Bangura, Alimamy; Swaray, Ibrahim; Lowe, Brett; +25 more... Kowuor, Dickens; Baiden, Frank; Mooney, Thomas; Smout, Elizabeth; Köhn, Brian; Otieno, Godfrey T; Jusu, Morrison; Foster, Julie; Samai, Mohamed; Deen, Gibrilla Fadlu; Larson, Heidi; Lees, Shelley; Goldstein, Neil; Gallagher, Katherine E; Gaddah, Auguste; Heerwegh, Dirk; Callendret, Benoit; Luhn, Kerstin; Robinson, Cynthia; Leyssen, Maarten; Greenwood, Brian; Douoguih, Macaya; Leigh, Bailah; Watson-Jones, Deborah; EBL3001 study group; (2021) Safety and long-term immunogenicity of the two-dose heterologous Ad26.ZEBOV and MVA-BN-Filo Ebola vaccine regimen in adults in Sierra Leone: a combined open-label, non-randomised stage 1, and a randomised, double-blind, controlled stage 2 trial. Lancet Infectious Diseases, 22 (1). pp. 97-109. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(21)00125-0

Jarvis, Christopher I; Gimma, Amy; van Zandvoort, Kevin; Wong, Kerry LM; CMMID COVID-19 working group; Edmunds, W John; (2021) The impact of local and national restrictions in response to COVID-19 on social contacts in England: a longitudinal natural experiment. BMC medicine, 19 (1). 52-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-021-01924-7

Jasser, Greta; McSwiney, Jordan; Pertwee, Ed; Zannettou, Savvas; (2021) ‘Welcome to #GabFam’: Far-right virtual community on Gab. New Media and Society, 25 (7). pp. 1728-1745. ISSN 1461-4448 DOI: https://doi.org/10.1177/14614448211024546

Jit, Mark; Ananthakrishnan, Aparna; McKee, Martin; Wouters, Olivier J; Beutels, Philippe; Teerawattananon, Yot; (2021) Multi-country collaboration in responding to global infectious disease threats: lessons for Europe from the COVID-19 pandemic. The Lancet regional health. Europe, 9. 100221-. ISSN 2666-7762 DOI: https://doi.org/10.1016/j.lanepe.2021.100221

Jombart, Thibaut; Ghozzi, Stéphane; Schumacher, Dirk; Taylor, Timothy J; Leclerc, Quentin J; Jit, Mark; Flasche, Stefan; Greaves, Felix; Ward, Tom; Eggo, Rosalind M; +7 more... Nightingale, Emily; Meakin, Sophie; Brady, Oliver J; Centre for Mathematical Modelling of Infectious Diseases COVID-1; Medley, Graham F; Höhle, Michael; Edmunds, W John; Centre for Mathematical Modelling; (2021) Real-time monitoring of COVID-19 dynamics using automated trend fitting and anomaly detection. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 376 (1829). 20200266-. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2020.0266

Karafillakis, E; Francis, MR; Paterson, P; Larson, HJ; (2021) Trust, emotions and risks: Pregnant women's perceptions, confidence and decision-making practices around maternal vaccination in France. Vaccine, 39 (30). pp. 4117-4125. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2021.05.096

Karafillakis, E; Paterson, P; Larson, HJ; (2021) 'My primary purpose is to protect the unborn child': Understanding pregnant women's perceptions of maternal vaccination and vaccine trials in Europe. Vaccine, 39 (39). pp. 5673-5679. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2021.07.099

Karat, Aaron S; McCreesh, Nicky; Baisley, Kathy; Govender, Indira; Kallon, Idriss I; Kielmann, Karina; MacGregor, Hayley; Vassall, Anna; Yates, Tom A; Grant, Alison D; (2021) Waiting times, patient flow, and occupancy density in South African primary health care clinics: implications for infection prevention and control. BMJ Yale - medRxiv preprint. DOI: https://doi.org/10.1101/2021.07.21.21260806

Kasstan, Ben; Mounier-Jack, Sandra; Letley, Louise; Gaskell, Katherine M; Roberts, Chrissy H; Stone, Neil RH; Lal, Sham; Eggo, Rosalind M; Marks, Michael; Chantler, Tracey; (2021) Localising Vaccination Services: Qualitative Insights on an Orthodox Jewish Collaboration with Public health during the UK coronavirus Vaccine Programme. DOI: https://doi.org/10.1101/2021.09.10.21263372 (Submitted)

Knock, Edward S; Whittles, Lilith K; Lees, John A; Perez-Guzman, Pablo N; Verity, Robert; FitzJohn, Richard G; Gaythorpe, Katy AM; Imai, Natsuko; Hinsley, Wes; Okell, Lucy C; +21 more... Rosello, Alicia; Kantas, Nikolas; Walters, Caroline E; Bhatia, Sangeeta; Watson, Oliver J; Whittaker, Charlie; Cattarino, Lorenzo; Boonyasiri, Adhiratha; Djaafara, Bimandra A; Fraser, Keith; Fu, Han; Wang, Haowei; Xi, Xiaoyue; Donnelly, Christl A; Jauneikaite, Elita; Laydon, Daniel J; White, Peter J; Ghani, Azra C; Ferguson, Neil M; Cori, Anne; Baguelin, Marc; (2021) Key epidemiological drivers and impact of interventions in the 2020 SARS-CoV-2 epidemic in England. Science translational medicine, 13 (602). eabg4262-. ISSN 1946-6234 DOI: https://doi.org/10.1126/scitranslmed.abg4262

Kovacevic, Aleksandra; Eggo, Rosalind M; Baguelin, Marc; Domenech de Cellès, Matthieu; Opatowski, Lulla; (2021) The Impact of Cocirculating Pathogens on Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)/Coronavirus Disease 2019 Surveillance: How Concurrent Epidemics May Introduce Bias and Decrease the Observed SARS-CoV-2 Percentage Positivity. The Journal of Infectious Diseases, 225 (2). pp. 199-207. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiab459

Ku, Chu-Chang; MacPherson, Peter; Khundi, McEwen; Nzawa Soko, Rebecca H; Feasey, Helena RA; Nliwasa, Marriott; Horton, Katherine C; Corbett, Elizabeth L; Dodd, Peter J; (2021) Durations of asymptomatic, symptomatic, and care-seeking phases of tuberculosis disease with a Bayesian analysis of prevalence survey and notification data. BMC Med, 19 (1). 298-. DOI: https://doi.org/10.1186/s12916-021-02128-9

Kucharski, Adam J; Hodcroft, Emma B; Kraemer, Moritz UG; (2021) Sharing, synthesis and sustainability of data analysis for epidemic preparedness in Europe. The Lancet Regional Health Europe, 9. 100215-. ISSN 2666-7762 DOI: https://doi.org/10.1016/j.lanepe.2021.100215

Larson, Heidi J; Broniatowski, David A; (2021) Volatility of vaccine confidence. Science (New York, N.Y.), 371 (6536). 1289-. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.abi6488

Leclerc, Quentin J; Fuller, Naomi M; Keogh, Ruth H; Diaz-Ordaz, Karla; Sekula, Richard; Semple, Malcolm G; ISARIC4C Investigators; CMMID COVID-19 Working Group; Atkins, Katherine E; Procter, Simon R; +1 more... Knight, Gwenan M; ISARIC4C Investigators, CMMID COVID-19 Working Group; (2021) Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England. BMC health services research, 21 (1). 566-. ISSN 1472-6963 DOI: https://doi.org/10.1186/s12913-021-06509-x

Leclerc, Quentin J; Nightingale, Emily S; Abbott, Sam; CMMID COVID-19 Working Group; Jombart, Thibaut; CMMID COVID-19 Working Group; (2021) Analysis of temporal trends in potential COVID-19 cases reported through NHS Pathways England. Scientific reports, 11 (1). 7106-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-021-86266-3

Lee, Sophie A; Economou, Theodoros; de Castro Catão, Rafael; Barcellos, Christovam; Lowe, Rachel; (2021) The impact of climate suitability, urbanisation, and connectivity on the expansion of dengue in 21st century Brazil. PLOS NEGLECTED TROPICAL DISEASES, 15 (12). e0009773-. ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0009773

Lee, Sophie A; Jarvis, Christopher I; Edmunds, W John; Economou, Theodoros; Lowe, Rachel; (2021) Spatial connectivity in mosquito-borne disease models: a systematic review of methods and assumptions. Journal of The Royal Society Interface, 18 (178). 20210096-. DOI: https://doi.org/10.1098/rsif.2021.0096

Li, Naizhe; Feng, Yun; Vrancken, Bram; Chen, Yuyang; Dong, Lu; Yang, Qiqi; Kraemer, Moritz UG; Pybus, Oliver G; Zhang, Hailin; Brady, Oliver J; +1 more... Tian, Huaiyu; (2021) Assessing the impact of COVID-19 border restrictions on dengue transmission in Yunnan Province, China: an observational epidemiological and phylogenetic analysis. Lancet Reg Health West Pac, 14. 100259-. ISSN 2666-6065 DOI: https://doi.org/10.1016/j.lanwpc.2021.100259

Li, Xiang; Mukandavire, Christinah; Cucunubá, Zulma M; Echeverria Londono, Susy; Abbas, Kaja; Clapham, Hannah E; Jit, Mark; Johnson, Hope L; Papadopoulos, Timos; Vynnycky, Emilia; +39 more... Brisson, Marc; Carter, Emily D; Clark, Andrew; de Villiers, Margaret J; Eilertson, Kirsten; Ferrari, Matthew J; Gamkrelidze, Ivane; Gaythorpe, Katy AM; Grassly, Nicholas C; Hallett, Timothy B; Hinsley, Wes; Jackson, Michael L; Jean, Kévin; Karachaliou, Andromachi; Klepac, Petra; Lessler, Justin; Li, Xi; Moore, Sean M; Nayagam, Shevanthi; Nguyen, Duy Manh; Razavi, Homie; Razavi-Shearer, Devin; Resch, Stephen; Sanderson, Colin; Sweet, Steven; Sy, Stephen; Tam, Yvonne; Tanvir, Hira; Tran, Quan Minh; Trotter, Caroline L; Truelove, Shaun; van Zandvoort, Kevin; Verguet, Stéphane; Walker, Neff; Winter, Amy; Woodruff, Kim; Ferguson, Neil M; Garske, Tini; Vaccine Impact Modelling Consortium; (2021) Estimating the health impact of vaccination against ten pathogens in 98 low-income and middle-income countries from 2000 to 2030: a modelling study. The Lancet, 397 (10272). pp. 398-408. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(20)32657-X

Li, You; Hodgson, David; Wang, Xin; Atkins, Katherine E; Feikin, Daniel R; Nair, Harish; (2021) Respiratory syncytial virus seasonality and prevention strategy planning for passive immunisation of infants in low-income and middle-income countries: a modelling study. The Lancet. Infectious diseases, 21 (9). pp. 1303-1312. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(20)30703-9

Lin, Leesa; Song, Yi; Wang, Qian; Pu, Jialu; Sun, Fiona Yueqian; Zhang, Yixuan; Zhou, Xinyu; Larson, Heidi J; Hou, Zhiyuan; (2021) Public Attitudes and Factors of COVID-19 Testing Hesitancy in the United Kingdom and China: Comparative Infodemiology Study. JMIR infodemiology, 1 (1). e26895-. DOI: https://doi.org/10.2196/26895

Lin, Liang-Yu; Bhate, Ketaki; Forbes, Harriet; Smeeth, Liam; Warren-Gash, Charlotte; Langan, Sinéad M; (2021) Vitamin D Deficiency or Supplementation and the Risk of Human Herpesvirus Infections or Reactivation: A Systematic Review and Meta-analysis. Open forum infectious diseases, 8 (1). ofaa570-. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofaa570

Lin, Liang-Yu; Smeeth, Liam; Langan, Sinead; Warren-Gash, Charlotte; (2021) Distribution of vitamin D status in the UK: a cross-sectional analysis of UK Biobank. BMJ open, 11 (1). e038503-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2020-038503

Liu, Di; Leung, Kathy; Jit, Mark; Wu, Joseph T; (2021) Cost-effectiveness of strategies for preventing paediatric lower respiratory infections associated with respiratory syncytial virus in eight Chinese cities. VACCINE, 39 (39). pp. 5490-5498. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2021.08.057

Liu, Yang; Morgenstern, Christian; Kelly, James; Lowe, Rachel; CMMID COVID-19 Working Group; Jit, Mark; (2021) The impact of non-pharmaceutical interventions on SARS-CoV-2 transmission across 130 countries and territories. BMC Medicine, 19 (1). 40-. DOI: https://doi.org/10.1186/s12916-020-01872-8

Liu, Yang; Sandmann, Frank G; Barnard, Rosanna C; Pearson, Carl AB; CMMID COVID-19 Working Group; Pastore, Roberta; Pebody, Richard; Flasche, Stefan; Jit, Mark; (2021) Optimising health and economic impacts of COVID-19 vaccine prioritisation strategies in the WHO European Region. medRxiv. DOI: https://doi.org/10.1101/2021.07.09.21260272

Loomba, Sahil; de Figueiredo, Alexandre; Piatek, Simon J; de Graaf, Kristen; Larson, Heidi J; (2021) Measuring the impact of COVID-19 vaccine misinformation on vaccination intent in the UK and USA. Nature human behaviour, 5 (3). pp. 337-348. ISSN 2397-3374 DOI: https://doi.org/10.1038/s41562-021-01056-1

Lovell-Read, Francesca A; Funk, Sebastian; Obolski, Uri; Donnelly, Christl A; Thompson, Robin N; (2021) Interventions targeting non-symptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case study. Journal of the Royal Society, Interface, 18 (178). 20201014-. ISSN 1742-5689 DOI: https://doi.org/10.1098/rsif.2020.1014

Lowe, Rachel; Armstrong, Ben; Abbott, Sam; Meakin, Sophie; O'Reilly, Kathleen; Von Borries, Rosa; Schneider, Rochelle; Roye, Dominic; Hashizume, Masahiro; Pascal, Mathilde; +4 more... Tobias, Aurelio; Vicedo-Cabrera, Ana Maria; Gasparrini, Antonio; Sera, Francesco; (2021) Analysis of the potential drivers of seasonality in COVID-19 transmission dynamics in 409 locations across 26 countries . In: EGU General Assembly 2021. DOI: https://doi.org/10.5194/egusphere-egu21-8955

Lowe, Rachel; Armstrong, Ben; Abbott, Sam; Meakin, Sophie; O'Reilly, Kathleen; von Borries, Rosa; Schneider, Rochelle; Royé, Dominic; Hashizume, Masahiro; Pascal, Mathilde; +4 more... Tobias, Aurelio; Vicedo-Cabrera, Ana; Gasparrini, Antonio; Sera, Francesco; (2021) Potential influence of meteorological conditions on early COVID-19 transmission dynamics in 409 cities across 26 countries. In: EMS Annual Meeting 2021, 6–10 Sep 2021. DOI: https://doi.org/10.5194/ems2021-438

Lowe, Rachel; Lee, Sophie A; O'Reilly, Kathleen M; Brady, Oliver J; Bastos, Leonardo; Carrasco-Escobar, Gabriel; de Castro Catão, Rafael; Colón-González, Felipe J; Barcellos, Christovam; Carvalho, Marilia Sá; +3 more... Blangiardo, Marta; Rue, Håvard; Gasparrini, Antonio; (2021) Combined effects of hydrometeorological hazards and urbanisation on dengue risk in Brazil: a spatiotemporal modelling study. The Lancet. Planetary health, 5 (4). e209-e219. ISSN 2542-5196 DOI: https://doi.org/10.1016/S2542-5196(20)30292-8

Mansfield, Kathryn E; Mathur, Rohini; Tazare, John; Henderson, Alasdair D; Mulick, Amy R; Carreira, Helena; Matthews, Anthony A; Bidulka, Patrick; Gayle, Alicia; Forbes, Harriet; +11 more... Cook, Sarah; Wong, Angel YS; Strongman, Helen; Wing, Kevin; Warren-Gash, Charlotte; Cadogan, Sharon L; Smeeth, Liam; Hayes, Joseph F; Quint, Jennifer K; McKee, Martin; Langan, Sinéad M; (2021) Indirect acute effects of the COVID-19 pandemic on physical and mental health in the UK: a population-based study. The Lancet. Digital health, 3 (4). e217-e230. ISSN 2589-7500 DOI: https://doi.org/10.1016/S2589-7500(21)00017-0

Mathur, Rohini; Rentsch, Christopher T; Morton, Caroline E; Hulme, William J; Schultze, Anna; MacKenna, Brian; Eggo, Rosalind M; Bhaskaran, Krishnan; Wong, Angel YS; Williamson, Elizabeth J; +27 more... Forbes, Harriet; Wing, Kevin; McDonald, Helen I; Bates, Chris; Bacon, Seb; Walker, Alex J; Evans, David; Inglesby, Peter; Mehrkar, Amir; Curtis, Helen J; DeVito, Nicholas J; Croker, Richard; Drysdale, Henry; Cockburn, Jonathan; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Tomlinson, Laurie; Evans, Stephen JW; Grieve, Richard; Harrison, David; Rowan, Kathy; Khunti, Kamlesh; Chaturvedi, Nishi; Smeeth, Liam; Goldacre, Ben; (2021) Ethnic differences in SARS-CoV-2 infection and COVID-19-related hospitalisation, intensive care unit admission, and death in 17 million adults in England: an observational cohort study using the OpenSAFELY platform. Lancet (London, England), 397 (10286). pp. 1711-1724. ISSN 0140-6736 DOI: https://doi.org/10.1016/s0140-6736(21)00634-6

Mayerová, Daniela; Abbas, Kaja; (2021) Childhood immunisation timeliness and vaccine confidence by health information source, maternal, socioeconomic, and geographic characteristics in Albania. BMC Public Health, 21 (1). 1724-. ISSN 1471-2458 DOI: https://doi.org/10.1186/s12889-021-11724-6

Mburu, CN; Ojal, J; Chebet, R; Akech, D; Karia, B; Tuju, J; Sigilai, A; Abbas, K; Jit, M; Funk, S; +9 more... Smits, G; van Gageldonk, PGM; van der Klis, FRM; Tabu, C; Nokes, DJ; LSHTM CMMID COVID-19 Working Group; Scott, Jag; Flasche, S; Adetifa, Imo; (2021) The importance of supplementary immunisation activities to prevent measles outbreaks during the COVID-19 pandemic in Kenya. BMC medicine, 19 (1). 35-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-021-01906-9

Mburu, CN; Ojal, J; Chebet, R; Akech, D; Karia, B; Tuju, J; Sigilai, A; Abbas, K; Jit, M; Funk, S; +8 more... Smits, G; van Gageldonk, PGM; van der Klis, FRM; Tabu, C; Nokes, DJ; Scott, JAG; Flasche, S; Adetifa, IMO; (2021) The importance of supplementary immunisation activities to prevent measles outbreaks during the COVID-19 pandemic in Kenya. BMC medicine. ISSN 1741-7015 DOI: https://doi.org/10.1101/2020.08.25.20181198

McCarthy, CV; Sandmann, FG; CMMID COVID-19 Working Group; Jit, M; (2021) Global and national estimates of the number of healthcare workers at high risk of SARS-CoV-2 infection. The Journal of hospital infection, 111. pp. 205-207. ISSN 0195-6701 DOI: https://doi.org/10.1016/j.jhin.2021.02.012

McCreesh, Nicky; Dlamini, Vuyiswa; Edwards, Anita; Olivier, Stephen; Dayi, Njabulo; Dikgale, Keabetswe; Nxumalo, Siyabonga; Dreyer, Jaco; Baisley, Kathy; Siedner, Mark J; +4 more... White, Richard G; Herbst, Kobus; Grant, Alison D; Harling, Guy; (2021) Impact of the Covid-19 epidemic and related social distancing regulations on social contact and SARS-CoV-2 transmission potential in rural South Africa: analysis of repeated cross-sectional surveys. BMC infectious diseases, 21 (1). 928-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-021-06604-8

McCreesh, Nicky; Karat, Aaron S; Baisley, Kathy; Diaconu, Karin; Bozzani, Fiammetta; Govender, Indira; Beckwith, Peter; Yates, Tom A; Deol, Arminder K; Houben, Rein MGJ; +3 more... Kielmann, Karina; White, Richard G; Grant, Alison D; (2021) Modelling the effect of infection prevention and control measures on rate of Mycobacterium tuberculosis transmission to clinic attendees in primary health clinics in South Africa. BMJ global health, 6 (10). e007124-e007124. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2021-007124

McQuaid, CF; Clarkson, MC; Bellerose, M; Floyd, K; White, RG; Menzies, NA; (2021) An approach for improving the quality of country-level TB modelling. The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease, 25 (8). pp. 614-619. ISSN 1027-3719 DOI: https://doi.org/10.5588/ijtld.21.0127

McQuaid, CF; Foster, N; Quaife, M; Levy, J; Tadesse, AW; Charalambous, S; Alacapa, JV; Deyanova, N; Mganga, A; Houben, RMGJ; +1 more... Fielding, KL; (2021) Digital adherence technology for TB: focus on livelihoods as well as lives. International journal of tuberculosis and lung disease, 25 (5). pp. 416-417. ISSN 1027-3719 DOI: https://doi.org/10.5588/ijtld.21.0070

McQuaid, CF; Vassall, A; Cohen, T; Fiekert, K; White, RG; (2021) The impact of COVID-19 on TB: a review of the data. International Journal of Tuberculosis and Lung Disease, 25 (6). pp. 436-446. ISSN 1027-3719 DOI: https://doi.org/10.5588/ijtld.21.0148

Mee, Paul; Alexander, Neal; Mayaud, Philippe; González, Felipe de Jesus Colón; Abbott, Sam; Santos, Andreza Aruska de Souza; Acosta, André Luís; Parag, Kris V; Pereira, Rafael HM; Prete, Carlos A; +4 more... Sabino, Ester C; Faria, Nuno R; LSHTM Centre for Mathematical Modelling of Infectious Disease CO; Brady, Oliver J; (2021) Tracking the emergence of disparities in the subnational spread of COVID-19 in Brazil using an online application for real-time data visualisation: A longitudinal analysis. The Lancet Regional Health - Americas, 5. None-. ISSN 2667-193X DOI: https://doi.org/10.1016/j.lana.2021.100119

Menzies, Nicolas A; Quaife, Matthew; Allwood, Brian W; Byrne, Anthony L; Coussens, Anna K; Harries, Anthony D; Marx, Florian M; Meghji, Jamilah; Pedrazzoli, Debora; Salomon, Joshua A; +5 more... Sweeney, Sedona; van Kampen, Sanne C; Wallis, Robert S; Houben, Rein MGJ; Cohen, Ted; (2021) Lifetime burden of disease due to incident tuberculosis: a global reappraisal including post-tuberculosis sequelae. LANCET GLOBAL HEALTH, 9 (12). e1679-e1687. DOI: https://doi.org/10.1016/S2214-109X(21)00367-3

Munday, James D; I Jarvis, Christopher; Gimma, Amy; Wong, Kerry LM; Zandvoort, Kevin van; Funk, Sebastian; Edmunds, W John; CMMID COVID-19 Working Group; (2021) Estimating the impact of reopening schools on the reproduction number of SARS-CoV-2 in England, using weekly contact survey data. BMJ Yale - medRxiv preprint. DOI: https://doi.org/10.1101/2021.03.06.21252964

Munday, James D; Jarvis, Christopher I; Gimma, Amy; Wong, Kerry LM; van Zandvoort, Kevin; CMMID COVID-19 Working Group; Funk, Sebastian; Edmunds, W John; CMMID COVID-19 Working Group; (2021) Estimating the impact of reopening schools on the reproduction number of SARS-CoV-2 in England, using weekly contact survey data. BMC medicine, 19 (1). 233-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-021-02107-0

Munday, James D; Pebody, Richard; Atkins, Katherine E; van Hoek, Albert Jan; (2021) Changing socio-economic and ethnic disparities in influenza/A/H1N1 infection early in the 2009 UK epidemic: a descriptive analysis. BMC INFECTIOUS DISEASES, 21 (1). 1243-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-021-06936-5

Munday, James D; Sherratt, Katharine; Meakin, Sophie; Endo, Akira; Pearson, Carl AB; Hellewell, Joel; Abbott, Sam; Bosse, Nikos I; CMMID COVID-19 Working Group; Atkins, Katherine E; +4 more... Wallinga, Jacco; Edmunds, W John; van Hoek, Albert Jan; Funk, Sebastian; (2021) Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in England. Nature communications, 12 (1). 1942-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-22213-0

Nakamura, Tomoka; Cohen, Adam L; Schwartz, Stephanie; Mwenda, Jason M; Weldegebriel, Goitom; Biey, Joseph NM; Katsande, Reggis; Ghoniem, Amany; Fahmy, Kamal; Rahman, Hossam Abdel; +40 more... Videbaek, Dovile; Daniels, Danni; Singh, Simarjit; Wasley, Annemarie; Rey-Benito, Gloria; de Oliveira, Lucia; Ortiz, Claudia; Tondo, Emmanuel; Liyanage, Jayantha BL; Sharifuzzaman, Mohammad; Grabovac, Varja; Batmunkh, Nyambat; Logronio, Josephine; Heffelfinger, James; Fox, Kimberly; De Gouveia, Linda; von Gottberg, Anne; Du Plessis, Mignon; Kwambana-Adams, Brenda; Antonio, Martin; El Gohary, Samaa; Azmy, Aya; Gamal, Asmaa; Voropaeva, Elena; Egorova, Ekaterina; Urban, Yulia; Duarte, Carolina; Veeraraghavan, Balaji; Saha, Samir; Howden, Ben; Sait, Michelle; Jung, Sangoun; Bae, Songmee; Litt, David; Seaton, Shila; Slack, Mary; Antoni, Sebastien; Ouattara, Mahamoudou; Van Beneden, Chris; Serhan, Fatima; (2021) The Global Landscape of Pediatric Bacterial Meningitis Data Reported to the World Health Organization-Coordinated Invasive Bacterial Vaccine-Preventable Disease Surveillance Network, 2014-2019. The Journal of infectious diseases, 224 (12 Sup). S161-S173. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiab217

Nalubega, Phiona; Karafillakis, Emilie; Atuhaire, Lydia; Akite, Pamela; Zalwango, Flavia; Chantler, Tracey; Cochet, Madeleine; Seeley, Janet; Le Doare, Kirsty; (2021) Maternal Vaccination in Uganda: Exploring Pregnant Women, Community Leaders and Healthcare Workers' Perceptions. Vaccines, 9 (6). p. 552. ISSN 2076-393X DOI: https://doi.org/10.3390/vaccines9060552

Ng, Lui; Foo, Dominic Chi-Chung; Wong, Carlos King-Ho; Man, Abraham Tak-Ka; Lo, Oswens Siu-Hung; Law, Wai-Lun; (2021) Repurposing DPP-4 Inhibitors for Colorectal Cancer: A Retrospective and Single Center Study. Cancers, 13 (14). p. 3588. ISSN 2072-6694 DOI: https://doi.org/10.3390/cancers13143588

Nightingale, Emily S; Brady, Oliver J; CMMID Covid-19 working group; Yakob, Laith; CMMID Covid-19 working group; (2021) The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 26 (49). ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2021.26.49.2001809

Nilles, Eric J; Siddiqui, Sameed M; Fischinger, Stephanie; Bartsch, Yannic C; de St. Aubin, Michael; Zhou, Guohai; Gluck, Matthew J; Berger, Samuel; Rhee, Justin; Petersen, Eric; +22 more... Mormann, Benjamin; Loesche, Michael; Hu, Yiyuan; Chen, Zhilin; Yu, Jingyou; Gebre, Makda; Atyeo, Caroline; Gorman, Matthew J; Zhu, Alex Lee; Burke, John; Slein, Matthew; Hasdianda, Mohammad A; Jambaulikar, Guruprasad; Boyer, Edward W; Sabeti, Pardis C; Barouch, Dan H; Julg, Boris; Kucharski, Adam J; Musk, Elon R; Lauffenburger, Douglas A; Alter, Galit; Menon, Anil S; (2021) Epidemiological and Immunological Features of Obesity and SARS-CoV-2. Viruses, 13 (11). p. 2235. DOI: https://doi.org/10.3390/v13112235

O'Reilly, Kathleen M; Sandman, Frank; Allen, David; Jarvis, Christopher I; Gimma, Amy; Douglas, Amy; Larkin, Lesley; Wong, Kerry LM; Baguelin, Marc; Baric, Ralph S; +4 more... Lindesmith, Lisa C; Goldstein, Richard A; Breuer, Judith; Edmunds, W John; (2021) Predicted norovirus resurgence in 2021-2022 due to the relaxation of nonpharmaceutical interventions associated with COVID-19 restrictions in England: a mathematical modeling study. BMC medicine, 19 (1). 299-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-021-02153-8

Opel, Douglas J; Larson, Heidi J; (2021) Vaccine Confidence and the Importance of an Interdisciplinary Approach. The Journal of law, medicine & ethics, 49 (4). pp. 596-598. ISSN 1073-1105 DOI: https://doi.org/10.1017/jme.2021.82

OpenSAFELY Collaborative; Curtis, Helen J; MacKenna, Brian; Walker, Alex J; Croker, Richard; Mehrkar, Amir; Morton, Caroline; Bacon, Seb; Hickman, George; Inglesby, Peter; +22 more... Bates, Chris; Evans, David; Ward, Tom; Cockburn, Jonathan; Davy, Simon; Bhaskaran, Krishnan; Schultze, Anna; Rentsch, Christopher T; Williamson, Elizabeth; Hulme, William; Tomlinson, Laurie; Mathur, Rohini; Drysdale, Henry; Eggo, Rosalind M; Wong, Angel Yun; Forbes, Harriet; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian; Smeeth, Liam; Goldacre, Ben; The OpenSAFELY Collaborative; (2021) OpenSAFELY: impact of national guidance on switching anticoagulant therapy during COVID-19 pandemic. Open heart, 8 (2). e001784-e001784. ISSN 2053-3624 DOI: https://doi.org/10.1136/openhrt-2021-001784

OpenSAFELY Collaborative; Wong, Angel YS; Tomlinson, Laurie A; Brown, Jeremy P; Elson, William; Walker, Alex J; Schultze, Anna; Morton, Caroline E; Evans, David; Inglesby, Peter; +21 more... MacKenna, Brian; Bhaskaran, Krishnan; Rentsch, Christopher T; Powell, Emma; Williamson, Elizabeth; Croker, Richard; Bacon, Seb; Hulme, William; Bates, Chris; Curtis, Helen J; Mehrkar, Amir; Cockburn, Jonathan; McDonald, Helen I; Mathur, Rohini; Wing, Kevin; Forbes, Harriet; Eggo, Rosalind M; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; Douglas, Ian J; OpenSAFELY Collaborative; (2021) Association between warfarin and COVID-19-related outcomes compared with direct oral anticoagulants: population-based cohort study. Journal of hematology & oncology, 14 (1). 172-. ISSN 1756-8722 DOI: https://doi.org/10.1186/s13045-021-01185-0

Ortiz-Prado, Esteban; Fernandez-Naranjo, Raul; Torres-Berru, Yeferson; Lowe, Rachel; Torres, Irene; (2021) Exceptional Prices of Medical and Other Supplies during the COVID-19 Pandemic in Ecuador. The American journal of tropical medicine and hygiene, 105 (1). pp. 81-87. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.21-0221

Ortiz-Prado, Esteban; Rivera-Olivero, Ismar A; Freire-Paspuel, Byron; Lowe, Rachel; Lozada, Tannya; Henriquez-Trujillo, Aquiles R; Garcia-Bereguiain, Miguel Angel; UDLA COVID-19 Team; UDLA COVID-19 Team; (2021) Testing for SARS-CoV-2 at the core of voluntary collective isolation: Lessons from the indigenous populations living in the Amazon region in Ecuador. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 105. pp. 234-235. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2021.02.039

Ortiz-Prado, Esteban; Simbaña-Rivera, Katherine; Barreno, Lenin Gómez; Diaz, Ana Maria; Barreto, Alejandra; Moyano, Carla; Arcos, Vannesa; Vásconez-González, Eduardo; Paz, Clara; Simbaña-Guaycha, Fernanda; +8 more... Molestina-Luzuriaga, Martin; Fernández-Naranjo, Raúl; Feijoo, Javier; Henriquez-Trujillo, Aquiles R; Adana, Lila; López-Cortés, Andrés; Fletcher, Isabel; Lowe, Rachel; (2021) Epidemiological, socio-demographic and clinical features of the early phase of the COVID-19 epidemic in Ecuador. PLOS NEGLECTED TROPICAL DISEASES, 15 (1). e0008958-. ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0008958

Palmer, Joseph; Sherratt, Katharine; Martin-Nielsen, Richard; Bevan, Jonnie; Gibbs, Hamish; Group, Cmmid; Funk, Sebastian; Abbott, Sam; (2021) covidregionaldata: Subnational data for COVID-19 epidemiology. Journal of Open Source Software, 6 (63). p. 3290. DOI: https://doi.org/10.21105/joss.03290

Paterson, Pauline; Clarke, Richard M; (2021) Climate change risk communication: a vaccine hesitancy perspective. The Lancet. Planetary health, 5 (4). e179-e180. ISSN 2542-5196 DOI: https://doi.org/10.1016/S2542-5196(21)00027-9

Paul, Proma; Procter, Simon R; Dangor, Ziyaad; Bassat, Quique; Abubakar, Amina; Santhanam, Sridhar; Libster, Romina; Gonçalves, Bronner P; Madhi, Shabir A; Bardají, Azucena; +23 more... Mwangome, Eva; Mabrouk, Adam; John, Hima B; Sánchez Yanotti, Clara; Chandna, Jaya; Sithole, Pamela; Mucasse, Humberto; Katana, Patrick V; Koukounari, Artemis; Harden, Lois M; Aerts, Celine; Ghoor, Azra; Leahy, Shannon; Mbatha, Sibongile; Lowick, Sarah; Lala, Sanjay G; Bramugy, Justina; Newton, Charles; Hossain, AKM Tanvir; Sadeq-Ur Rahman, Qazi; Lambach, Philipp; Jit, Mark; Lawn, Joy E; (2021) Quantifying long-term health and economic outcomes for survivors of group B Streptococcus invasive disease in infancy: protocol of a multi-country study in Argentina, India, Kenya, Mozambique and South Africa. Gates Open Research, 4. 138-. DOI: https://doi.org/10.12688/gatesopenres.13185.2

Pavelka, Martin; Van-Zandvoort, Kevin; Abbott, Sam; Sherratt, Katharine; Majdan, Marek; CMMID COVID-19 working group; Inštitút Zdravotných Analýz; Jarčuška, Pavol; Krajčí, Marek; Flasche, Stefan; +1 more... Funk, Sebastian; CMMID COVID-19 working group, In�titút Zdravotných Analýz; (2021) The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia. Science (New York, N.Y.), 372 (6542). pp. 635-641. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.abf9648

Pearson, Carl AB; Bozzani, Fiammetta; Procter, Simon R; Davies, Nicholas G; Huda, Maryam; Jensen, Henning Tarp; Keogh-Brown, Marcus; Khalid, Muhammad; Sweeney, Sedona; Torres-Rueda, Sergio; +5 more... CHiL COVID-19 Working Group; CMMID COVID-19 Working Group; Eggo, Rosalind M; Vassall, Anna; Jit, Mark; CHiL COVID-19 Working Group, CMMID COVID-19 Working Group; (2021) COVID-19 vaccination in Sindh Province, Pakistan: A modelling study of health impact and cost-effectiveness. PLoS medicine, 18 (10). e1003815-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1003815

Pearson, Carl AB; Clifford, Sam; Pulliam, Juliet RC; Eggo, Rosalind M; (2021) Pre-vaccination testing could expand coverage of two-dose COVID vaccines. Wellcome Open Research, 6. p. 105. DOI: https://doi.org/10.12688/wellcomeopenres.16835.1

Pearson, Carl AB; Edmunds, W John; Hladish, Thomas J; Eggo, Rosalind M; (2021) Potential test-negative design study bias in outbreak settings: application to Ebola vaccination in Democratic Republic of Congo. International journal of epidemiology, 51 (1). pp. 265-278. ISSN 0300-5771 DOI: https://doi.org/10.1093/ije/dyab172

Pedrazzoli, Debora; Carter, Daniel J; Borghi, Josephine; Laokri, Samia; Boccia, Delia; Houben, Rein Mgj; (2021) Does Ghana's National Health Insurance Scheme provide financial protection to tuberculosis patients and their households? Social Science and Medicine, 277. 113875-. ISSN 0277-9536 DOI: https://doi.org/10.1016/j.socscimed.2021.113875 Item availability may be restricted.

Pley, Caitlin; Evans, Megan; Lowe, Rachel; Montgomery, Hugh; Yacoub, Sophie; (2021) Digital and technological innovation in vector-borne disease surveillance to predict, detect, and control climate-driven outbreaks. LANCET PLANETARY HEALTH, 5 (10). e739-e745. ISSN 2542-5196 DOI: https://doi.org/10.1016/S2542-5196(21)00141-8

Pollett, Simon; Johansson, Michael A; Reich, Nicholas G; Brett-Major, David; Del Valle, Sara Y; Venkatramanan, Srinivasan; Lowe, Rachel; Porco, Travis; Berry, Irina Maljkovic; Deshpande, Alina; +20 more... Kraemer, Moritz UG; Blazes, David L; Pan-Ngum, Wirichada; Vespigiani, Alessandro; Mate, Suzanne E; Silal, Sheetal P; Kandula, Sasikiran; Sippy, Rachel; Quandelacy, Talia M; Morgan, Jeffrey J; Ball, Jacob; Morton, Lindsay C; Althouse, Benjamin M; Pavlin, Julie; van Panhuis, Wilbert; Riley, Steven; Biggerstaff, Matthew; Viboud, Cecile; Brady, Oliver; Rivers, Caitlin; (2021) Recommended reporting items for epidemic forecasting and prediction research: The EPIFORGE 2020 guidelines. PLoS medicine, 18 (10). e1003793-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1003793

Prem, Kiesha; Zandvoort, Kevin van; Klepac, Petra; Eggo, Rosalind M; Davies, Nicholas G; Centre for the Mathematical Modelling of Infectious Diseases COV; Cook, Alex R; Jit, Mark; Centre for Mathematical Modelling of Infectious Diseases COV; (2021) Projecting contact matrices in 177 geographical regions: An update and comparison with empirical data for the COVID-19 era. PLoS computational biology, 17 (7). e1009098-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1009098

Procter, Simon R; Abbas, Kaja; Flasche, Stefan; Griffiths, Ulla; Hagedorn, Brittany; O'Reilly, Kathleen M; CMMID COVID-19 Working Group; Jit, Mark; (2021) SARS-CoV-2 infection risk during delivery of childhood vaccination campaigns: a modelling study. BMC Medicine, 19 (1). 198-. DOI: https://doi.org/10.1186/s12916-021-02072-8

Pung, Rachael; Mak, Tze Minn; CMMID COVID-19 working group; Kucharski, Adam J; Lee, Vernon J; (2021) Serial intervals in SARS-CoV-2 B.1.617.2 variant cases. Lancet, 398 (10303). pp. 837-838. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(21)01697-4

Pung, Rachael; Mak, Tze Minn; Kucharski, Adam J; Lee, Vernon J; (2021) Serial intervals observed in SARS-CoV-2 B.1.617.2 variant cases. medRxiv preprint. ISSN 1468-5833 DOI: https://doi.org/10.1101/2021.06.04.21258205

Quilty, Billy J; Clifford, Samuel; Hellewell, Joel; Russell, Timothy W; Kucharski, Adam J; Flasche, Stefan; Edmunds, W John; Centre for the Mathematical Modelling of Infectious Diseases COV; (2021) Quarantine and testing strategies in contact tracing for SARS-CoV-2: a modelling study. The Lancet Public Health, 6 (3). e175-e183. ISSN 2468-2667 DOI: https://doi.org/10.1016/S2468-2667(20)30308-X

Read, Jonathan M; Green, Chris A; Harrison, Ewen M; Docherty, Annemarie B; Funk, Sebastian; Harrison, Janet; Girvan, Michelle; Hardwick, Hayley E; Turtle, Lance; Dunning, Jake; +5 more... Nguyen-Van-Tam, Jonathan S; Openshaw, Peter Jm; Baillie, J Kenneth; Semple, Malcolm G; ISARIC4C investigators; (2021) Hospital-acquired SARS-CoV-2 infection in the UK's first COVID-19 pandemic wave. Lancet, 398 (10305). pp. 1037-1038. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(21)01786-4

Rees, Eleanor M; Minter, Amanda; Edmunds, W John; Lau, Colleen L; Kucharski, Adam J; Lowe, Rachel; (2021) Transmission modelling of environmentally persistent zoonotic diseases: a systematic review. The Lancet. Planetary health, 5 (7). e466-e478. ISSN 2542-5196 DOI: https://doi.org/10.1016/S2542-5196(21)00137-6

Rees, Eleanor M; Waterlow, Naomi R; Lowe, Rachel; Kucharski, Adam J; (2021) Estimating the duration of seropositivity of human seasonal coronaviruses using seroprevalence studies. Wellcome Open Research, 6. p. 138. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.16701.3

Robert, Alexis; Funk, Sebastian; Kucharski, Adam J; (2021) <i>o2geosocial</i>: Reconstructing who-infected-whom from routinely collected surveillance data. F1000Research, 10. 31-. ISSN 2046-1402 DOI: https://doi.org/10.12688/f1000research.28073.2

Roberts, Chrissy H; Brindle, Hannah; Rogers, Nina T; Eggo, Rosalind M; Enria, Luisa; Lees, Shelley; (2021) Vaccine Confidence and Hesitancy at the Start of COVID-19 Vaccine Deployment in the UK: An Embedded Mixed-Methods Study. Frontiers in public health, 9. 745630-. ISSN 2296-2565 DOI: https://doi.org/10.3389/fpubh.2021.745630

Romanello, Marina; van Daalen, Kim; Anto, Josep M; Dasandi, Niheer; Drummond, Paul; Hamilton, Ian G; Jankin, Slava; Kendrovski, Vladimir; Lowe, Rachel; Rocklöv, Joacim; +4 more... Schmoll, Oliver; Semenza, Jan C; Tonne, Cathryn; Nilsson, Maria; (2021) Tracking progress on health and climate change in Europe. LANCET PUBLIC HEALTH, 6 (11). e858-e865. ISSN 2468-2667 DOI: https://doi.org/10.1016/S2468-2667(21)00207-3

Royé, Dominic; Sera, Francesco; Tobías, Aurelio; Lowe, Rachel; Gasparrini, Antonio; Pascal, Mathilde; de'Donato, Francesca; Nunes, Baltazar; Teixeira, Joao Paulo; (2021) Effects of Hot Nights on Mortality in Southern Europe. Epidemiology, 32 (4). pp. 487-498. ISSN 1044-3983 DOI: https://doi.org/10.1097/EDE.0000000000001359

Russell, Timothy W; Wu, Joseph T; Clifford, Sam; Edmunds, W John; Kucharski, Adam J; Jit, Mark; Centre for the Mathematical Modelling of Infectious Diseases COV; Centre for the Mathematical Modelling of Infectious Diseases COV; (2021) Effect of internationally imported cases on internal spread of COVID-19: a mathematical modelling study. LANCET PUBLIC HEALTH, 6 (1). e12-e20. ISSN 2468-2667 DOI: https://doi.org/10.1016/S2468-2667(20)30263-2

Saadi, Nuru; Chi, Y-Ling; Ghosh, Srobana; Eggo, Rosalind M; McCarthy, Ciara V; Quaife, Matthew; Dawa, Jeanette; Jit, Mark; Vassall, Anna; (2021) Models of COVID-19 vaccine prioritisation: a systematic literature search and narrative review. BMC medicine, 19 (1). 318-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-021-02190-3

Saadi, Nuru; Chi, Y-Ling; Ghosh, Srobana; Eggo, Rosalind M; McCarthy, Ciara; Quaife, Matthew; Dawa, Jeanette; Jit, Mark; Vassall, Anna; (2021) Models of COVID-19 vaccine prioritisation: a systematic literature search and narrative review. medRxiv. DOI: https://doi.org/10.1101/2021.06.21.21259104

Sandmann, Frank G; Jit, Mark; (2021) Rapid COVID-19 vaccine rollout: immense success but challenges ahead. The Lancet. Infectious diseases, 22 (3). pp. 302-304. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(21)00616-2

Sandmann, Frank; Jit, Mark; Andrews, Nick; Buckley, Hannah L; Campbell, Helen; Ribeiro, Sonia; Sile, Bersabeh; Stowe, Julia; Tessier, Elise; Ramsay, Mary; +2 more... Amirthalingam, Gayatri; Choi, Yoon H; (2021) Evaluating the impact of a continued maternal pertussis immunisation programme in England: A modelling study and cost-effectiveness analysis. Vaccine, 39 (32). pp. 4500-4509. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2021.06.042

Sandmann, Frank; Ramsay, Mary; Edmunds, W John; Choi, Yoon H; Jit, Mark; (2021) How to Prevent Vaccines Falling Victim to Their Own Success: Intertemporal Dependency of Incidence Levels on Indirect Effects in Economic Reevaluations. Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research, 24 (10). pp. 1391-1399. ISSN 1098-3015 DOI: https://doi.org/10.1016/j.jval.2021.03.022

Seale, Anna C; Ibeto, Maryirene; Gallo, Josie; le Polain de Waroux, Olivier; Glynn, Judith R; Fogarty, Jenny; (2021) Learning from each other in the COVID-19 pandemic. Wellcome Open Research, 5. p. 105. DOI: https://doi.org/10.12688/wellcomeopenres.15973.2

Seale, Anna C; Ibeto, Maryirene; Gallo, Josie; le Polain de Waroux, Olivier; Glynn, Judith R; Fogarty, Jenny; (2021) Learning from each other in the COVID-19 pandemic. Wellcome Open Research, 5. 105-. DOI: https://doi.org/10.12688/wellcomeopenres.15973.2

Sera, Francesco; Armstrong, Ben; Abbott, Sam; Meakin, Sophie; O'Reilly, Kathleen; von Borries, Rosa; Schneider, Rochelle; Royé, Dominic; Hashizume, Masahiro; Pascal, Mathilde; +6 more... Tobias, Aurelio; Vicedo-Cabrera, Ana Maria; MCC Collaborative Research Network; CMMID COVID-19 Working Group; Gasparrini, Antonio; Lowe, Rachel; MCC Collaborative Research Network, CMMID COVID-19 Working Group; (2021) A cross-sectional analysis of meteorological factors and SARS-CoV-2 transmission in 409 cities across 26 countries. Nature communications, 12 (1). 5968-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-25914-8

Shaikh, Nabila; Pelzer, Puck T; Thysen, Sanne M; Roy, Partho; Harris, Rebecca C; White, Richard G; (2021) Impact of COVID-19 Disruptions on Global BCG Coverage and Paediatric TB Mortality: A Modelling Study. Vaccines, 9 (11). p. 1228. ISSN 2076-393X DOI: https://doi.org/10.3390/vaccines9111228

Shaker, Nermin Mahmoud; Sabry, Noha; Alkasaby, Muhammad Abdullatif; Rabie, Menan; (2021) Predictors of stress among a sample of Egyptian healthcare providers during the COVID-19 pandemic. Middle East Current Psychiatry, 28 (1). ISSN 2090-5416 DOI: https://doi.org/10.1186/s43045-021-00164-y

Shaweno, Debebe; Horton, Katherine C; Hayes, Richard J; Dodd, Peter J; (2021) Assortative social mixing and sex disparities in tuberculosis burden. Scientific reports, 11 (1). 7530-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-021-86869-w

Sherratt, Katharine; Abbott, Sam; Meakin, Sophie R; Hellewell, Joel; Munday, James D; Bosse, Nikos; CMMID COVID-19 Working Group; Jit, Mark; Funk, Sebastian; (2021) Exploring surveillance data biases when estimating the reproduction number: with insights into subpopulation transmission of COVID-19 in England. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 376 (1829). 20200283-. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2020.0283

Sherratt, Katharine; Abbott, Sam; Meakin, Sophie R; Hellewell, Joel; Munday, James D; Bosse, Nikos; Jit, Mark; Funk, Sebastian; (2021) Exploring surveillance data biases when estimating the reproduction number: with insights into subpopulation transmission of Covid-19 in England. Philosophical transactions of the Royal Society of London Series B, Biological sciences, 376 (1829). ISSN 0962-8436 DOI: https://doi.org/10.1101/2020.10.18.20214585

Shiekh, Suhail Ismail; Cadogan, Sharon Louise; Lin, Liang-Yu; Mathur, Rohini; Smeeth, Liam; Warren-Gash, Charlotte; (2021) Ethnic Differences in Dementia Risk: A Systematic Review and Meta-Analysis. Journal of Alzheimer's disease : JAD, 80 (1). pp. 337-355. ISSN 1387-2877 DOI: https://doi.org/10.3233/JAD-201209

Simas, Clarissa; Larson, Heidi J; Paterson, Pauline; (2021) "Saint Google, now we have information!": a qualitative study on narratives of trust and attitudes towards maternal vaccination in Mexico City and Toluca. BMC public health, 21 (1). 1170-. ISSN 1471-2458 DOI: https://doi.org/10.1186/s12889-021-11184-y

Simas, Clarissa; Larson, Heidi J; Paterson, Pauline; (2021) ''Those who do not vaccinate don't love themselves, or anyone else'': a qualitative study of views and attitudes of urban pregnant women towards maternal immunisation in Panama. BMJ open, 11 (8). e044903-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2020-044903

Simas, Clarissa; Paterson, Pauline; Lees, Shelley; J Larson, Heidi; (2021) "From my phone, I could rule the world": Critical engagement with maternal vaccine information, vaccine confidence builders and post-Zika outbreak rumours in Brazil. Vaccine, 39 (33). pp. 4700-4704. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2021.06.039

Soko, Rebecca Nzawa; Burke, Rachael M; Feasey, Helena RA; Sibande, Wakumanya; Nliwasa, Marriott; Henrion, Marc YR; Khundi, McEwen; Dodd, Peter J; Ku, Chu Chang; Kawalazira, Gift; +4 more... Choko, Augustine T; Divala, Titus H; Corbett, Elizabeth L; MacPherson, Peter; (2021) Effects of Coronavirus Disease Pandemic on Tuberculosis Notifications, Malawi. Emerging infectious diseases, 27 (7). pp. 1831-1839. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2707.210557

Soko, Rebecca Nzawa; Burke, Rachael M; Feasey, Helena RA; Sibande, Wakumanya; Nliwasa, Marriott; Henrion, Marc YR; Khundi, McEwen; Dodd, Peter J; Ku, Chu Chang; Kawalazira, Gift; +4 more... Choko, Augustine T; Divala, Titus H; Corbett, Elizabeth L; MacPherson, Peter; (2021) Impact of COVID-19 on tuberculosis notifications in Blantyre Malawi: an interrupted time series analysis and qualitative study with healthcare workers. medRxiv preprint. ISSN 1468-5833 DOI: https://doi.org/10.1101/2021.03.15.21253601

Sumner, T; Fiore-Gartland, A; Hatherill, M; Houben, RMGJ; Scriba, TJ; White, RG; (2021) The effect of new Mycobacterium tuberculosis infection on the sensitivity of prognostic TB signatures. The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease, 25 (12). pp. 1001-1005. ISSN 1027-3719 DOI: https://doi.org/10.5588/ijtld.21.0323

Sumner, Tom; Mendelsohn, Simon C; Scriba, Thomas J; Hatherill, Mark; White, Richard G; (2021) The impact of blood transcriptomic biomarker targeted tuberculosis preventive therapy in people living with HIV: a mathematical modelling study. BMC Med, 19 (1). 252-. DOI: https://doi.org/10.1186/s12916-021-02127-w

Sunohara, Satoshi; Asakura, Toshiaki; Kimura, Takashi; Ozawa, Shun; Oshima, Satoshi; Yamauchi, Daigo; Tamakoshi, Akiko; (2021) Effective vaccine allocation strategies, balancing economy with infection control against COVID-19 in Japan. PLOS ONE, 16 (9). e0257107. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0257107 Item availability may be restricted.

Sweeney, Sedona; Capeding, Theo Prudencio Juhani; Eggo, Rosalind; Huda, Maryam; Jit, Mark; Mudzengi, Don; Naylor, Nichola R; Procter, Simon; Quaife, Matthew; Serebryakova, Lela; +4 more... Torres-Rueda, Sergio; Vargas, Veronica; CHiL COVID Working Group; Vassall, Anna; CHiL COVID Working Group; (2021) Exploring equity in health and poverty impacts of control measures for SARS-CoV-2 in six countries. BMJ global health, 6 (5). e005521-e005521. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2021-005521

Tadesse, Amare W; Mohammed, Zemedu; Foster, Nicola; Quaife, Matthew; McQuaid, Christopher Finn; Levy, Jens; van Kalmthout, Kristian; van Rest, Job; Jerene, Degu; Abdurhman, Tofik; +7 more... Yazew, Hiwot; Umeta, Demekech G; Assefa, Demelash; Weldemichael, Gedion T; Bedru, Ahmed; Letta, Taye; Fielding, Katherine L; (2021) Evaluation of implementation and effectiveness of digital adherence technology with differentiated care to support tuberculosis treatment adherence and improve treatment outcomes in Ethiopia: a study protocol for a cluster randomised trial. BMC Infectious Diseases, 21 (1). 1149-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-021-06833-x

Tennant, Warren SD; Cardinale, Eric; Cêtre-Sossah, Catherine; Moutroifi, Youssouf; Le Godais, Gilles; Colombi, Davide; Spencer, Simon EF; Tildesley, Mike J; Keeling, Matt J; Charafouddine, Onzade; +3 more... Colizza, Vittoria; Edmunds, W John; Métras, Raphaëlle; (2021) Modelling the persistence and control of Rift Valley fever virus in a spatially heterogeneous landscape. Nature communications, 12 (1). 5593-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-25833-8

Thindwa, Deus; Wolter, Nicole; Pinsent, Amy; Carrim, Maimuna; Ojal, John; Tempia, Stefano; Moyes, Jocelyn; McMorrow, Meredith; Kleynhans, Jackie; Gottberg, Anne von; +4 more... French, Neil; PHIRST group; Cohen, Cheryl; Flasche, Stefan; PHIRST group; (2021) Estimating the contribution of HIV-infected adults to household pneumococcal transmission in South Africa, 2016-2018: A hidden Markov modelling study. PLOS COMPUTATIONAL BIOLOGY, 17 (12). e1009680-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1009680

Thompson, Hayley A; Mousa, Andria; Dighe, Amy; Fu, Han; Arnedo-Pena, Alberto; Barrett, Peter; Bellido-Blasco, Juan; Bi, Qifang; Caputi, Antonio; Chaw, Liling; +14 more... De Maria, Luigi; Hoffmann, Matthias; Mahapure, Kiran; Ng, Kangqi; Raghuram, Jagadesan; Singh, Gurpreet; Soman, Biju; Soriano, Vicente; Valent, Francesca; Vimercati, Luigi; Wee, Liang En; Wong, Justin; Ghani, Azra C; Ferguson, Neil M; (2021) Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Setting-specific Transmission Rates: A Systematic Review and Meta-analysis. Clinical Infectious Diseases, 73 (3). e754-e764. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciab100

Toor, Jaspreet; Echeverria-Londono, Susy; Li, Xiang; Abbas, Kaja; Carter, Emily D; Clapham, Hannah E; Clark, Andrew; de Villiers, Margaret J; Eilertson, Kirsten; Ferrari, Matthew; +37 more... Gamkrelidze, Ivane; Hallett, Timothy B; Hinsley, Wes R; Hogan, Daniel; Huber, John H; Jackson, Michael L; Jean, Kevin; Jit, Mark; Karachaliou, Andromachi; Klepac, Petra; Kraay, Alicia; Lessler, Justin; Li, Xi; Lopman, Benjamin A; Mengistu, Tewodaj; Metcalf, C Jessica E; Moore, Sean M; Nayagam, Shevanthi; Papadopoulos, Timos; Perkins, T Alex; Portnoy, Allison; Razavi, Homie; Razavi-Shearer, Devin; Resch, Stephen; Sanderson, Colin; Sweet, Steven; Tam, Yvonne; Tanvir, Hira; Tran Minh, Quan; Trotter, Caroline L; Truelove, Shaun A; Vynnycky, Emilia; Walker, Neff; Winter, Amy; Woodruff, Kim; Ferguson, Neil M; Gaythorpe, Katy Am; (2021) Lives saved with vaccination for 10 pathogens across 112 countries in a pre-COVID-19 world. eLife, 10. DOI: https://doi.org/10.7554/eLife.67635

Torres-Rueda, Sergio; Sweeney, Sedona; Bozzani, Fiammetta; Naylor, Nichola R; Baker, Tim; Pearson, Carl; Eggo, Rosalind; Procter, Simon R; Davies, Nicholas; Quaife, Matthew; +11 more... Kitson, Nichola; Keogh-Brown, Marcus R; Jensen, Henning Tarp; Saadi, Nuru; Khan, Mishal; Huda, Maryam; Kairu, Angela; Zaidi, Raza; Barasa, Edwine; Jit, Mark; Vassall, Anna; (2021) Stark choices: exploring health sector costs of policy responses to COVID-19 in low-income and middle-income countries. BMJ Global Health, 6 (12). e005759-e005759. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2021-005759

Tsang, Helen Hoi Lun; Wong, Carlos King Ho; Cheung, Prudence Wing Hang; Lau, Chak Sing; Chung, Ho Yin; Cheung, Jason Pui Yin; (2021) Responsiveness of the EuroQoL 5-Dimension (EQ-5D) questionnaire in patients with spondyloarthritis. BMC musculoskeletal disorders, 22 (1). p. 439. ISSN 1471-2474 DOI: https://doi.org/10.1186/s12891-021-04315-4

Tuan, Le Anh; Prem, Kiesha; Pham, Quang Duy; Toh, Zheng Quan; Tran, Hau Phuc; Nguyen, Phuc Duy; Mai, Chu Thi Ngoc; Ly, Le Thi Khanh; Cao, Van; Le-Ha, Tam-Duong; +9 more... Tuan, Nguyen Anh; Jit, Mark; Bright, Kathryn; Brisson, Marc; Nguyen, Thuong Vu; Garland, Suzanne; Anh, Dang Duc; Trang, Nguyen Van; Mulholland, Kim; (2021) Anal human papillomavirus prevalence and risk factors among men who have sex with men in Vietnam. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 112. pp. 136-143. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2021.09.016

Turner, Hugo C; Archer, Rachel A; Downey, Laura E; Isaranuwatchai, Wanrudee; Chalkidou, Kalipso; Jit, Mark; Teerawattananon, Yot; (2021) An Introduction to the Main Types of Economic Evaluations Used for Informing Priority Setting and Resource Allocation in Healthcare: Key Features, Uses, and Limitations. Front Public Health, 9. 722927-. DOI: https://doi.org/10.3389/fpubh.2021.722927

Vardavas, Constantine; Nikitara, Katerina; Zisis, Konstantinos; Athanasakis, Konstantinos; Phalkey, Revati; Leonardi-Bee, Jo; Johnson, Helen; Tsolova, Svetla; Ciotti, Massimo; Suk, Jonathan E; (2021) Cost-effectiveness of emergency preparedness measures in response to infectious respiratory disease outbreaks: a systematic review and econometric analysis. BMJ open, 11 (4). e045113. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2020-045113

Verelst, Frederik; Hermans, Lisa; Vercruysse, Sarah; Gimma, Amy; Coletti, Pietro; Backer, Jantien A; Wong, Kerry LM; Wambua, James; van Zandvoort, Kevin; Willem, Lander; +7 more... Bogaardt, Laurens; Faes, Christel; Jarvis, Christopher I; Wallinga, Jacco; Edmunds, W John; Beutels, Philippe; Hens, Niel; (2021) SOCRATES-CoMix: a platform for timely and open-source contact mixing data during and in between COVID-19 surges and interventions in over 20 European countries. BMC medicine, 19 (1). 254-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-021-02133-y

Voorman, Arend; O'Reilly, Kathleen; Lyons, Hil; Goel, Ajay Kumar; Touray, Kebba; Okiror, Samuel; (2021) Real-time prediction model of cVDPV2 outbreaks to aid outbreak response vaccination strategies. Vaccine, 41 Sup (Suppl). A105-A112. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2021.08.064

Vöhringer, Harald S; Sanderson, Theo; Sinnott, Matthew; De Maio, Nicola; Nguyen, Thuy; Goater, Richard; Schwach, Frank; Harrison, Ian; Hellewell, Joel; Ariani, Cristina V; +19 more... Gonçalves, Sonia; Jackson, David K; Johnston, Ian; Jung, Alexander W; Saint, Callum; Sillitoe, John; Suciu, Maria; Goldman, Nick; Panovska-Griffiths, Jasmina; Wellcome Sanger Institute COVID-19 Surveillance Team; COVID-19 Genomics UK (COG-UK) Consortium*; Birney, Ewan; Volz, Erik; Funk, Sebastian; Kwiatkowski, Dominic; Chand, Meera; Martincorena, Inigo; Barrett, Jeffrey C; Gerstung, Moritz; (2021) Genomic reconstruction of the SARS-CoV-2 epidemic in England. NATURE, 600 (7889). pp. 506-511. ISSN 0028-0836 DOI: https://doi.org/10.1038/s41586-021-04069-y

Walker, Alex J; MacKenna, Brian; Inglesby, Peter; Tomlinson, Laurie; Rentsch, Christopher T; Curtis, Helen J; Morton, Caroline E; Morley, Jessica; Mehrkar, Amir; Bacon, Seb; +31 more... Hickman, George; Bates, Chris; Croker, Richard; Evans, David; Ward, Tom; Cockburn, Jonathan; Davy, Simon; Bhaskaran, Krishnan; Schultze, Anna; Williamson, Elizabeth J; Hulme, William J; McDonald, Helen I; Mathur, Rohini; Eggo, Rosalind M; Wing, Kevin; Wong, Angel Ys; Forbes, Harriet; Tazare, John; Parry, John; Hester, Frank; Harper, Sam; O'Hanlon, Shaun; Eavis, Alex; Jarvis, Richard; Avramov, Dima; Griffiths, Paul; Fowles, Aaron; Parkes, Nasreen; Douglas, Ian J; Evans, Stephen Jw; (The OpenSAFELY Collaborative); (2021) Clinical coding of long COVID in English primary care: a federated analysis of 58 million patient records in situ using OpenSAFELY. British Journal of General Practice, 71 (712). e806-e814. ISSN 0960-1643 DOI: https://doi.org/10.3399/BJGP.2021.0301

Walker, Jemma L; Grint, Daniel J; Strongman, Helen; Eggo, Rosalind M; Peppa, Maria; Minassian, Caroline; Mansfield, Kathryn E; Rentsch, Christopher T; Douglas, Ian J; Mathur, Rohini; +8 more... Wong, Angel YS; Quint, Jennifer K; Andrews, Nick; Bernal, Jamie Lopez; Scott, J Anthony; Ramsay, Mary; Smeeth, Liam; McDonald, Helen I; (2021) UK prevalence of underlying conditions which increase the risk of severe COVID-19 disease: a point prevalence study using electronic health records. BMC public health, 21 (1). 484-. ISSN 1471-2458 DOI: https://doi.org/10.1186/s12889-021-10427-2

Wan, Eric Yuk Fai; Chin, Weng Yee; Yu, Esther Yee Tak; Chen, Julie; Tse, Emily Tsui Yee; Wong, Carlos King Ho; Ha, Tony King Hang; Chao, David Vai Kiong; Tsui, Wendy Wing Sze; Lam, Cindy Lo Kuen; (2021) Retrospective cohort study to investigate the 10-year trajectories of disease patterns in patients with hypertension and/or diabetes mellitus on subsequent cardiovascular outcomes and health service utilisation: a study protocol. BMJ open, 11 (2). e038775. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2020-038775

Waterlow, Naomi R; Flasche, Stefan; Minter, Amanda; Eggo, Rosalind M; (2021) Competition between RSV and influenza: Limits of modelling inference from surveillance data. Epidemics, 35. 100460-. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2021.100460

Waterlow, Naomi R; van Leeuwen, Edwin; Davies, Nicholas G; CMMID COVID-19 Working Group; Flasche, Stefan; Eggo, Rosalind M; CMMID COVID-19 Working Group; (2021) How immunity from and interaction with seasonal coronaviruses can shape SARS-CoV-2 epidemiology. Proceedings of the National Academy of Sciences of the United States of America, 118 (49). e2108395118-. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.2108395118

Weerasuriya, Chathika K; Harris, Rebecca C; McQuaid, C Finn; Bozzani, Fiammetta; Ruan, Yunzhou; Li, Renzhong; Li, Tao; Rade, Kirankumar; Rao, Raghuram; Ginsberg, Ann M; +2 more... Gomez, Gabriela B; White, Richard G; (2021) The epidemiologic impact and cost-effectiveness of new tuberculosis vaccines on multidrug-resistant tuberculosis in India and China. BMC Medicine, 19 (1). 60-. DOI: https://doi.org/10.1186/s12916-021-01932-7

Weerasuriya, Chathika Krishan; Harris, Rebecca Claire; Quaife, Matthew; McQuaid, Christopher Finn; White, Richard G; Gomez, Gabriela B; (2021) Affordability of Adult Tuberculosis Vaccination in India and China: A Dynamic Transmission Model-Based Analysis. Vaccines, 9 (3). p. 245. DOI: https://doi.org/10.3390/vaccines9030245

Whitworth, Hilary S; Schiller, John; Markowitz, Lauri E; Jit, Mark; Brisson, Marc; Simpson, Evan; Watson-Jones, Deborah; (2021) Continued HPV vaccination in the face of unexpected challenges: A commentary on the rationale for an extended interval two-dose schedule. Vaccine, 39 (6). pp. 871-875. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2020.12.031

Williamson, Elizabeth J; McDonald, Helen I; Bhaskaran, Krishnan; Walker, Alex J; Bacon, Sebastian; Davy, Simon; Schultze, Anna; Tomlinson, Laurie; Bates, Chris; Ramsay, Mary; +26 more... Curtis, Helen J; Forbes, Harriet; Wing, Kevin; Minassian, Caroline; Tazare, John; Morton, Caroline E; Nightingale, Emily; Mehrkar, Amir; Evans, Dave; Inglesby, Peter; MacKenna, Brian; Cockburn, Jonathan; Rentsch, Christopher T; Mathur, Rohini; Wong, Angel YS; Eggo, Rosalind M; Hulme, William; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; Kuper, Hannah; (2021) Risks of covid-19 hospital admission and death for people with learning disability: population based cohort study using the OpenSAFELY platform. BMJ (Clinical research ed.), 374. n1592-. ISSN 0959-8138 DOI: https://doi.org/10.1136/bmj.n1592

Wong, Angel Ys; MacKenna, Brian; Morton, Caroline E; Schultze, Anna; Walker, Alex J; Bhaskaran, Krishnan; Brown, Jeremy P; Rentsch, Christopher T; Williamson, Elizabeth; Drysdale, Henry; +23 more... Croker, Richard; Bacon, Seb; Hulme, William; Bates, Chris; Curtis, Helen J; Mehrkar, Amir; Evans, David; Inglesby, Peter; Cockburn, Jonathan; McDonald, Helen I; Tomlinson, Laurie; Mathur, Rohini; Wing, Kevin; Forbes, Harriet; Eggo, Rosalind M; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Smeeth, Liam; Douglas, Ian J; Goldacre, Ben; OpenSAFELY Collaborative; (2021) Use of non-steroidal anti-inflammatory drugs and risk of death from COVID-19: an OpenSAFELY cohort analysis based on two cohorts. Annals of the rheumatic diseases, 80 (7). pp. 943-951. ISSN 0003-4967 DOI: https://doi.org/10.1136/annrheumdis-2020-219517

Wu, Joseph T; Mei, Shujiang; Luo, Sihui; Leung, Kathy; Liu, Di; Lv, Qiuying; Liu, Jian; Li, Yuan; Prem, Kiesha; Jit, Mark; +4 more... Weng, Jianping; Feng, Tiejian; Zheng, Xueying; Leung, Gabriel M; (2021) A global assessment of the impact of school closure in reducing COVID-19 spread. Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 380 (2214). 20210124-. ISSN 1364-503X DOI: https://doi.org/10.1098/rsta.2021.0124

Youssef, Dina Mohamed; Wieland, Barbara; Knight, Gwenan M; Lines, Jo; Naylor, Nichola R; (2021) The effectiveness of biosecurity interventions in reducing the transmission of bacteria from livestock to humans at the farm level: A systematic literature review. Zoonoses and public health, 68 (6). pp. 549-562. ISSN 1863-1959 DOI: https://doi.org/10.1111/zph.12807

Zhou, Xinyu; Song, Yi; Jiang, Hao; Wang, Qian; Qu, Zhiqiang; Zhou, Xiaoyu; Jit, Mark; Hou, Zhiyuan; Lin, Leesa; (2021) Comparison of Public Responses to Containment Measures During the Initial Outbreak and Resurgence of COVID-19 in China: Infodemiology Study. Journal of medical Internet research, 23 (4). e26518-. ISSN 1439-4456 DOI: https://doi.org/10.2196/26518