Libardi, Arturo de la Cruz; Masselot, Pierre; Schneider, Rochelle; Nightingale, Emily; Milojevic, Ai; Vanoli, Jacopo; Mistry, Malcolm N; Gasparrini, Antonio; (2024) High resolution mapping of nitrogen dioxide and particulate matter in Great Britain (2003-2021) with multi-stage data reconstruction and ensemble machine learning methods. Atmospheric pollution research, 15 (11). 102284-. ISSN 1309-1042 DOI: https://doi.org/10.1016/j.apr.2024.102284

Nightingale, ES; Feasey, HRA; Khundi, M; Soko, RN; Burke, RM; Nliwasa, M; Twabi, H; Mpunga, JA; Fielding, K; MacPherson, P; +1 more... Corbett, EL; (2024) Community-level variation in TB testing history in Blantyre, Malawi. The international journal of tuberculosis and lung disease, 28 (2). pp. 99-105. ISSN 1027-3719 DOI: https://doi.org/10.5588/ijtld.23.0213

Sherratt, Katharine; Carnegie, Anna C; Kucharski, Adam; Cori, Anne; Pearson, Carl AB; Jarvis, Christopher I; Overton, Christopher; Weston, Dale; Hill, Edward M; Knock, Edward; +17 more... Fearon, Elizabeth; Nightingale, Emily; Hellewell, Joel; Edmunds, W John; Villabona Arenas, Julián; Prem, Kiesha; Pi, Li; Baguelin, Marc; Kendall, Michelle; Ferguson, Neil; Davies, Nicholas; Eggo, Rosalind M; van Elsland, Sabine; Russell, Timothy; Funk, Sebastian; Liu, Yang; Abbott, Sam; (2024) Improving modelling for epidemic responses: reflections from members of the UK infectious disease modelling community on their experiences during the COVID-19 pandemic. Wellcome open research, 9. 12-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.19601.1

Subramanian, Swaminathan; Maheswari, Rajendran Uma; Prabavathy, Gopalakrishnan; Khan, Mashroor Ahmad; Brindha, Balan; Srividya, Adinarayanan; Kumar, Ashwani; Rahi, Manju; Nightingale, Emily S; Medley, Graham F; +3 more... Cameron, Mary M; Roy, Nupur; Jambulingam, Purushothaman; (2024) Modelling spatiotemporal patterns of visceral leishmaniasis incidence in two endemic states in India using environment, bioclimatic and demographic data, 2013-2022. PLoS neglected tropical diseases, 18 (2). e0011946-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0011946

McIntyre-Nolan, Shannon; Kumar, Vijay; Mark-Carew, Miguella; Kumar, Kundan; Nightingale, Emily S; Dalla Libera Marchiori, Giorgia; Rogers, Matthew E; Kristan, Mojca; Campino, Susana; Medley, Graham F; +2 more... Das, Pradeep; Cameron, Mary M; (2023) Comparison of collection methods for Phlebotomus argentipes sand flies to use in a molecular xenomonitoring system for the surveillance of visceral leishmaniasis. PLoS neglected tropical diseases, 17 (9). e0011200-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0011200

Nightingale, ES; (2023) Spatio-Temporal Patterns and Surveillance of Infectious Disease During Emergence and Elimination. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04671120

Nightingale, Emily S; Abbott, Sam; Russell, Timothy W; CMMID Covid-19 Working Group; Lowe, Rachel; Medley, Graham F; Brady, Oliver J; (2022) The local burden of disease during the first wave of the COVID-19 epidemic in England: estimation using different data sources from changing surveillance practices. BMC public health, 22 (1). 716-. ISSN 1471-2458 DOI: https://doi.org/10.1186/s12889-022-13069-0

Schultze, Anna; Nightingale, Emily; Evans, David; Hulme, William; Rosello, Alicia; Bates, Chris; Cockburn, Jonathan; MacKenna, Brian; Curtis, Helen J; Morton, Caroline E; +32 more... Croker, Richard; Bacon, Seb; McDonald, Helen I; Rentsch, Christopher T; Bhaskaran, Krishnan; Mathur, Rohini; Tomlinson, Laurie A; Williamson, Elizabeth J; Forbes, Harriet; Tazare, John; Grint, Daniel; Walker, Alex J; Inglesby, Peter; DeVito, Nicholas J; Mehrkar, Amir; Hickman, George; Davy, Simon; Ward, Tom; Fisher, Louis; Green, Amelia Ca; Wing, Kevin; Wong, Angel Ys; McManus, Robert; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Douglas, Ian J; Smeeth, Liam; Eggo, Rosalind M; Goldacre, Ben; Leon, David A; (2022) Mortality among Care Home Residents in England during the first and second waves of the COVID-19 pandemic: an observational study of 4.3 million adults over the age of 65. The Lancet regional health. Europe, 14. 100295-. ISSN 2666-7762 DOI: https://doi.org/10.1016/j.lanepe.2021.100295

Wing, Kevin; Grint, Daniel J; Mathur, Rohini; Gibbs, Hamish P; Hickman, George; Nightingale, Emily; Schultze, Anna; Forbes, Harriet; Nafilyan, Vahé; Bhaskaran, Krishnan; +16 more... Williamson, Elizabeth; House, Thomas; Pellis, Lorenzo; Herrett, Emily; Gautam, Nileesa; Curtis, Helen J; Rentsch, Christopher T; Wong, Angel YS; MacKenna, Brian; Mehrkar, Amir; Bacon, Seb; Douglas, Ian J; Evans, Stephen JW; Tomlinson, Laurie; Goldacre, Ben; Eggo, Rosalind M; (2022) Association between household composition and severe COVID-19 outcomes in older people by ethnicity: an observational cohort study using the OpenSAFELY platform. International Journal of Epidemiology, 51 (6). pp. 1745-1760. ISSN 0300-5771 DOI: https://doi.org/10.1093/ije/dyac158

Gibbs, Hamish; Nightingale, Emily; Liu, Yang; Cheshire, James; Danon, Leon; Smeeth, Liam; Pearson, Carl AB; Grundy, Chris; LSHTM CMMID COVID-19 working group; Kucharski, Adam J; +1 more... Eggo, Rosalind M; LSHTM CMMID COVID-19 working group; (2021) Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19. PLoS computational biology, 17 (7). e1009162-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1009162

Grint, Daniel J; Wing, Kevin; Houlihan, Catherine; Gibbs, Hamish P; Evans, Stephen JW; Williamson, Elizabeth; McDonald, Helen I; Bhaskaran, Krishnan; Evans, David; Walker, Alex J; +27 more... Hickman, George; Nightingale, Emily; Schultze, Anna; Rentsch, Christopher T; Bates, Chris; Cockburn, Jonathan; Curtis, Helen J; Morton, Caroline E; Bacon, Sebastian; Davy, Simon; Wong, Angel YS; Mehrkar, Amir; Tomlinson, Laurie; Douglas, Ian J; Mathur, Rohini; MacKenna, Brian; Ingelsby, Peter; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; DeVito, Nicholas J; Hulme, Will; Tazare, John; Smeeth, Liam; Goldacre, Ben; Eggo, Rosalind M; (2021) Severity of Severe Acute Respiratory System Coronavirus 2 (SARS-CoV-2) Alpha Variant (B.1.1.7) in England. Clinical infectious diseases, 75 (1). e1120-e1127. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciab754

Grint, Daniel J; Wing, Kevin; Williamson, Elizabeth; McDonald, Helen I; Bhaskaran, Krishnan; Evans, David; Evans, Stephen Jw; Walker, Alex J; Hickman, George; Nightingale, Emily; +26 more... Schultze, Anna; Rentsch, Christopher T; Bates, Chris; Cockburn, Jonathan; Curtis, Helen J; Morton, Caroline E; Bacon, Sebastian; Davy, Simon; Wong, Angel Ys; Mehrkar, Amir; Tomlinson, Laurie; Douglas, Ian J; Mathur, Rohini; Blomquist, Paula; MacKenna, Brian; Ingelsby, Peter; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; DeVito, Nicholas J; Hulme, Will; Tazare, John; Goldacre, Ben; Smeeth, Liam; Eggo, Rosalind M; (2021) Case fatality risk of the SARS-CoV-2 variant of concern B.1.1.7 in England, 16 November to 5 February. Eurosurveillance, 26 (11). pp. 10-15. ISSN 1025-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2021.26.11.2100256

Jombart, Thibaut; Ghozzi, Stéphane; Schumacher, Dirk; Taylor, Timothy J; Leclerc, Quentin J; Jit, Mark; Flasche, Stefan; Greaves, Felix; Ward, Tom; Eggo, Rosalind M; +7 more... Nightingale, Emily; Meakin, Sophie; Brady, Oliver J; Centre for Mathematical Modelling of Infectious Diseases COVID-1; Medley, Graham F; Höhle, Michael; Edmunds, W John; Centre for Mathematical Modelling; (2021) Real-time monitoring of COVID-19 dynamics using automated trend fitting and anomaly detection. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 376 (1829). 20200266-. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2020.0266

Leclerc, Quentin J; Nightingale, Emily S; Abbott, Sam; CMMID COVID-19 Working Group; Jombart, Thibaut; CMMID COVID-19 Working Group; (2021) Analysis of temporal trends in potential COVID-19 cases reported through NHS Pathways England. Scientific reports, 11 (1). 7106-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-021-86266-3

Nightingale, Emily S; Brady, Oliver J; CMMID Covid-19 working group; Yakob, Laith; CMMID Covid-19 working group; (2021) The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 26 (49). ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2021.26.49.2001809

Schultze, Anna; Bates, Chris; Cockburn, Jonathan; MacKenna, Brian; Nightingale, Emily; Curtis, Helen J; Hulme, William J; Morton, Caroline E; Croker, Richard; Bacon, Seb; +29 more... McDonald, Helen I; Rentsch, Christopher T; Bhaskaran, Krishnan; Mathur, Rohini; Tomlinson, Laurie A; Williamson, Elizabeth J; Forbes, Harriet; Tazare, John; Grint, Daniel J; Walker, Alex J; Inglesby, Peter; DeVito, Nicholas J; Mehrkar, Amir; Hickman, George; Davy, Simon; Ward, Tom; Fisher, Louis; Evans, David; Wing, Kevin; Wong, Angel Ys; McManus, Robert; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Douglas, Ian J; Smeeth, Liam; Eggo, Rosalind M; Goldacre, Ben; (2021) Identifying Care Home Residents in Electronic Health Records - An OpenSAFELY Short Data Report. Wellcome open research, 6. 90-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.16737.1

Williamson, Elizabeth J; McDonald, Helen I; Bhaskaran, Krishnan; Walker, Alex J; Bacon, Sebastian; Davy, Simon; Schultze, Anna; Tomlinson, Laurie; Bates, Chris; Ramsay, Mary; +26 more... Curtis, Helen J; Forbes, Harriet; Wing, Kevin; Minassian, Caroline; Tazare, John; Morton, Caroline E; Nightingale, Emily; Mehrkar, Amir; Evans, Dave; Inglesby, Peter; MacKenna, Brian; Cockburn, Jonathan; Rentsch, Christopher T; Mathur, Rohini; Wong, Angel YS; Eggo, Rosalind M; Hulme, William; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; Kuper, Hannah; (2021) Risks of covid-19 hospital admission and death for people with learning disability: population based cohort study using the OpenSAFELY platform. BMJ (Clinical research ed.), 374. n1592-. ISSN 0959-8138 DOI: https://doi.org/10.1136/bmj.n1592

Baguelin, Marc; Medley, Graham F; Nightingale, Emily S; O'Reilly, Kathleen M; Rees, Eleanor M; Waterlow, Naomi R; Wagner, Moritz; (2020) Tooling-up for infectious disease transmission modelling. Epidemics, 32. 100395-. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2020.100395

Gibbs, Hamish; Nightingale, Emily; Liu, Yang; Cheshire, James; Danon, Leon; Smeeth, Liam; Pearson, Carl AB; Grundy, Chris; Kucharski, Adam J; Eggo, Rosalind M; (2020) Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19. MedRxiv. DOI: https://doi.org/10.1101/2020.10.26.20219550

Jit, Mark; Jombart, Thibaut; Nightingale, Emily S; Endo, Akira; Abbott, Sam; LSHTM Centre for Mathematical Modelling of Infectious Diseases C; Edmunds, W John; (2020) Estimating number of cases and spread of coronavirus disease (COVID-19) using critical care admissions, United Kingdom, February to March 2020. EUROSURVEILLANCE, 25 (18). pp. 6-10. ISSN 1560-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.18.2000632

Mudimu, Edinah; Peebles, Kathryn; Mukandavire, Zindoga; Nightingale, Emily; Sharma, Monisha; Medley, Graham F; Klein, Daniel J; Kripke, Katharine; Bershteyn, Anna; (2020) Individual and community-level benefits of PrEP in western Kenya and South Africa: Implications for population prioritization of PrEP provision. PLOS ONE, 15 (12). e0244761-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0244761

Nightingale, ES; Brady, OJ; Yakob, L; (2020) The importance of saturating density dependence for predicting SARS-CoV-2 resurgence. medRxiv preprint - BMJ Yale. ISSN 1468-5833 DOI: https://doi.org/10.1101/2020.08.28.20183921 Item availability may be restricted.

Nightingale, Emily S; Chapman, Lloyd AC; Srikantiah, Sridhar; Subramanian, Swaminathan; Jambulingam, Purushothaman; Bracher, Johannes; Cameron, Mary M; Medley, Graham F; (2020) A spatio-temporal approach to short-term prediction of visceral leishmaniasis diagnoses in India. PLOS NEGLECTED TROPICAL DISEASES, 14 (7). e0008422-. ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0008422

Rees, Eleanor M; Nightingale, Emily S; Jafari, Yalda; Waterlow, Naomi R; Clifford, Samuel; B Pearson, Carl A; Group, Cmmid Working; Jombart, Thibaut; Procter, Simon R; Knight, Gwenan M; (2020) COVID-19 length of hospital stay: a systematic review and data synthesis. BMC MEDICINE, 18 (1). 270-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01726-3

Rees, Eleanor M; Nightingale, Emily S; Jafari, Yalda; Waterlow, Naomi; Clifford, Samuel; Pearson, Carl AB; Jombert, Thibaut; Procter, Simon R; Knight, Gwenan M; (2020) COVID-19 length of hospital stay: a systematic review and data synthesis. BMC medicine, 18 (270). ISSN 1741-7015 DOI: https://doi.org/10.1101/2020.04.30.20084780

Williamson, Elizabeth J; Tazare, John; Bhaskaran, Krishnan; Walker, Alex J; McDonald, Helen I; Tomlinson, Laurie A; Bacon, Sebastian; Bates, Chris; Curtis, Helen J; Forbes, Harriet; +32 more... Minassian, Caroline; Morton, Caroline E; Nightingale, Emily; Mehrkar, Amir; Evans, Dave; Nicholson, Brian D; Leon, David; Inglesby, Peter; MacKenna, Brian; Cockburn, Jonathan; Davies, Nicholas G; Hulme, Will J; Morley, Jessica; Douglas, Ian J; Rentsch, Christopher T; Mathur, Rohini; Wong, Angel; Schultze, Anna; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Perera, Rafael; Grieve, Richard; Harrison, David; Steyerberg, Ewout; Eggo, Rosalind M; Diaz-Ordaz, Karla; Keogh, Ruth; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; (2020) Study protocol: Comparison of different risk prediction modelling approaches for COVID-19 related death using the OpenSAFELY platform. Wellcome Open Research, 5. p. 243. DOI: https://doi.org/10.12688/wellcomeopenres.16353.1