Items where Author or Contributor is "Abbott, Sam"

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Number of items: 44.

2022

Chen, Yuyang; Li, Naizhe; Lourenço, José; Wang, Lin; Cazelles, Bernard; Dong, Lu; Li, Bingying; Liu, Yang; Jit, Mark; Bosse, Nikos I; +6 more... Abbott, Sam; Velayudhan, Raman; Wilder-Smith, Annelies; Tian, Huaiyu; Brady, Oliver J; CMMID COVID-19 Working Group; (2022) Measuring the effects of COVID-19-related disruption on dengue transmission in southeast Asia and Latin America: a statistical modelling study. The Lancet. Infectious diseases, 22 (5). pp. 657-667. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(22)00025-1
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Nyberg, Tommy; Ferguson, Neil M; Nash, Sophie G; Webster, Harriet H; Flaxman, Seth; Andrews, Nick; Hinsley, Wes; Bernal, Jamie Lopez; Kall, Meaghan; Bhatt, Samir; +17 more... Blomquist, Paula; Zaidi, Asad; Volz, Erik; Aziz, Nurin Abdul; Harman, Katie; Funk, Sebastian; Abbott, Sam; COVID-19 Genomics UK (COG-UK) consortium; Hope, Russell; Charlett, Andre; Chand, Meera; Ghani, Azra C; Seaman, Shaun R; Dabrera, Gavin; De Angelis, Daniela; Presanis, Anne M; Thelwall, Simon; (2022) Comparative analysis of the risks of hospitalisation and death associated with SARS-CoV-2 omicron (B.1.1.529) and delta (B.1.617.2) variants in England: a cohort study. Lancet (London, England), 399 (10332). pp. 1303-1312. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(22)00462-7
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2021

Bracher, J; Wolffram, D; Deuschel, J; Görgen, K; Ketterer, JL; Ullrich, A; Abbott, S; Barbarossa, MV; Bertsimas, D; Bhatia, S; +29 more... Bodych, M; Bosse, NI; Burgard, JP; Castro, L; Fairchild, G; Fuhrmann, J; Funk, S; Gogolewski, K; Gu, Q; Heyder, S; Hotz, T; Kheifetz, Y; Kirsten, H; Krueger, T; Krymova, E; Li, ML; Meinke, JH; Michaud, IJ; Niedzielewski, K; Ożański, T; Rakowski, F; Scholz, M; Soni, S; Srivastava, A; Zieliński, J; Zou, D; Gneiting, T; Schienle, M; List of Contributors by Team; List of Contributors by Team; (2021) A pre-registered short-term forecasting study of COVID-19 in Germany and Poland during the second wave. Nature communications, 12 (1). 5173-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-25207-0
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Davis, Emma L; Lucas, Tim CD; Borlase, Anna; Pollington, Timothy M; Abbott, Sam; Ayabina, Diepreye; Crellen, Thomas; Hellewell, Joel; Pi, Li; CMMID COVID-19 Working Group; +3 more... Medley, Graham F; Hollingsworth, T Déirdre; Klepac, Petra; CMMID COVID-19 Working Group; (2021) Contact tracing is an imperfect tool for controlling COVID-19 transmission and relies on population adherence. Nature communications, 12 (1). 5412-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-25531-5
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Gostic, Katelyn M; McGough, Lauren; Baskerville, Edward B; Abbott, Sam; Joshi, Keya; Tedijanto, Christine; Kahn, Rebecca; Niehus, Rene; Hay, James A; De Salazar, Pablo M; +15 more... Hellewell, Joel; Meakin, Sophie; Munday, James D; Bosse, Nikos I; Sherrat, Katharine; Thompson, Robin N; White, Laura F; Huisman, Jana S; Scire, Jérémie; Bonhoeffer, Sebastian; Stadler, Tanja; Wallinga, Jacco; Funk, Sebastian; Lipsitch, Marc; Cobey, Sarah; (2021) Correction: Practical considerations for measuring the effective reproductive number, Rt. PLoS Computational Biology, 17 (12). e1009679-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1009679 Item availability may be restricted.
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Mee, Paul; Alexander, Neal; Mayaud, Philippe; Colon Gonzalez, Felipe de Jesus; Abbott, Sam; de Souza Santos, Andreza Aruska; Acosta, Andre Luis; Parag, Kris V; Pereira, Rafael HM; Prete Jr, Carlos A; +4 more... Sabino, Ester C; Faria, Nuno R; Brady, Oliver J; LSHTM Centre for Mathematical Modelling of Infectious Disease CO; (2021) Tracking the emergence of disparities in the subnational spread of COVID-19 in Brazil using an online application for real-time data visualisation: a longitudinal analysis. medRxiv preprint. DOI: https://doi.org/10.1101/2021.04.30.21256386
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Mee, Paul; Alexander, Neal; Mayaud, Philippe; González, Felipe de Jesus Colón; Abbott, Sam; Santos, Andreza Aruska de Souza; Acosta, André Luís; Parag, Kris V; Pereira, Rafael HM; Prete, Carlos A; +4 more... Sabino, Ester C; Faria, Nuno R; LSHTM Centre for Mathematical Modelling of Infectious Disease CO; Brady, Oliver J; (2021) Tracking the emergence of disparities in the subnational spread of COVID-19 in Brazil using an online application for real-time data visualisation: A longitudinal analysis. The Lancet Regional Health - Americas, 5. None-. ISSN 2667-193X DOI: https://doi.org/10.1016/j.lana.2021.100119
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Palmer, Joseph; Sherratt, Katharine; Martin-Nielsen, Richard; Bevan, Jonnie; Gibbs, Hamish; Group, Cmmid; Funk, Sebastian; Abbott, Sam; (2021) covidregionaldata: Subnational data for COVID-19 epidemiology. Journal of Open Source Software, 6 (63). p. 3290. DOI: https://doi.org/10.21105/joss.03290
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Pavelka, Martin; Van-Zandvoort, Kevin; Abbott, Sam; Sherratt, Katharine; Majdan, Marek; Jar?u�ka, Pavol; Kraj?í, Marek; Flasche, Stefan; Funk, Sebastian; CMMID COVID-19 working group, In�titút Zdravotných Analýz; (2021) The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia. Science (New York, N.Y.), 372 (6542). pp. 635-641. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.abf9648
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Sera, Francesco; Armstrong, Ben; Abbott, Sam; Meakin, Sophie; O'Reilly, Kathleen; von Borries, Rosa; Schneider, Rochelle; Royé, Dominic; Hashizume, Masahiro; Pascal, Mathilde; +6 more... Tobias, Aurelio; Vicedo-Cabrera, Ana Maria; MCC Collaborative Research Network; CMMID COVID-19 Working Group; Gasparrini, Antonio; Lowe, Rachel; MCC Collaborative Research Network, CMMID COVID-19 Working Group; (2021) A cross-sectional analysis of meteorological factors and SARS-CoV-2 transmission in 409 cities across 26 countries. Nature communications, 12 (1). 5968-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-25914-8 Item availability may be restricted.
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Vegvari, Carolin; Abbott, Sam; Ball, Frank; Brooks-Pollock, Ellen; Challen, Robert; Collyer, Benjamin S; Dangerfield, Ciara; Gog, Julia R; Gostic, Katelyn M; Heffernan, Jane M; +10 more... Hollingsworth, T Déirdre; Isham, Valerie; Kenah, Eben; Mollison, Denis; Panovska-Griffiths, Jasmina; Pellis, Lorenzo; Roberts, Michael G; Scalia Tomba, Gianpaolo; Thompson, Robin N; Trapman, Pieter; (2021) Commentary on the use of the reproduction number R during the COVID-19 pandemic. Statistical Methods in Medical Research. 9622802211037079-. ISSN 0962-2802 DOI: https://doi.org/10.1177/09622802211037079
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2020

Abbott, Sam; Hellewell, Joel; Thompson, Robin N; Sherratt, Katharine; Gibbs, Hamish P; Bosse, Nikos I; Munday, James D; Meakin, Sophie; Doughty, Emma L; Chun, June Young; +11 more... Chan, Yung-Wai Desmond; Finger, Flavio; Campbell, Paul; Endo, Akira; Pearson, Carl AB; Gimma, Amy; Russell, Tim; Flasche, Stefan; Kucharski, Adam J; Eggo, Rosalind M; Funk, Sebastian; (2020) Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts. Wellcome Open Research, 5. p. 112. DOI: https://doi.org/10.12688/wellcomeopenres.16006.1
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Abbott, Sam; Hellewell, Joel; Thompson, Robin N; Sherratt, Katharine; Gibbs, Hamish P; Bosse, Nikos I; Munday, James D; Meakin, Sophie; Doughty, Emma L; Chun, June Young; +11 more... Chan, Yung-Wai Desmond; Finger, Flavio; Campbell, Paul; Endo, Akira; Pearson, Carl AB; Gimma, Amy; Russell, Tim; Flasche, Stefan; Kucharski, Adam J; Eggo, Rosalind M; Funk, Sebastian; (2020) Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts. Wellcome Open Research, 5. p. 112. DOI: https://doi.org/10.12688/wellcomeopenres.16006.2
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Davis, Emma L; Lucas, Tim CD; Borlase, Anna; Pollington, Timothy M; Abbott, Sam; Ayabina, Diepreye; Crellen, Thomas; Hellewell, Joel; Pi, Li; Medley, Graham F; +2 more... Hollingsworth, T Déirdre; Klepac, Petra; (2020) An imperfect tool: contact tracing could provide valuable reductions in COVID-19 transmission if good adherence can be achieved and maintained. medRxiv preprint. ISSN 1468-5833 DOI: https://doi.org/10.1101/2020.06.09.20124008
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Funk, S; Abbott, S; Atkins, BD; Baguelin, M; Baillie, JK; Birrell, P; Blake, J; Bosse, NI; Burton, J; Carruthers, J; +37 more... Davies, NG; De Angelis, D; Dyson, L; Edmunds, WJ; Eggo, RM; Ferguson, NM; Gaythorpe, K; Gorsich, E; Guyver-Fletcher, G; Hellewell, J; Hill, EM; Holmes, A; House, TA; Jewell, C; Jit, M; Jombart, T; Joshi, I; Keeling, MJ; Kendall, E; Knock, ES; Kucharski, AJ; Lythgoe, KA; Meakin, SR; Munday, JD; Openshaw, PJM; Overton, CE; Pagani, F; Pearson, J; Perez-Guzman, PN; Pellis, L; Scarabel, F; Semple, MG; Sherratt, K; Tang, M; Tildesley, MJ; Van Leeuwen, E; Whittles, LK; (2020) Short-term forecasts to inform the response to the Covid-19 epidemic in the UK. medRxiv preprint - BMJ Yale. ISSN 1468-5833 DOI: https://doi.org/10.1101/2020.11.11.20220962
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Gostic, Katelyn M; McGough, Lauren; Baskerville, Edward B; Abbott, Sam; Joshi, Keya; Tedijanto, Christine; Kahn, Rebecca; Niehus, Rene; Hay, James A; De Salazar, Pablo M; +15 more... Hellewell, Joel; Meakin, Sophie; Munday, James D; Bosse, Nikos I; Sherrat, Katharine; Thompson, Robin N; White, Laura F; Huisman, Jana S; Scire, Jérémie; Bonhoeffer, Sebastian; Stadler, Tanja; Wallinga, Jacco; Funk, Sebastian; Lipsitch, Marc; Cobey, Sarah; (2020) Practical considerations for measuring the effective reproductive number, Rt. PLOS COMPUTATIONAL BIOLOGY, 16 (12). e1008409-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1008409
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Gostic, Katelyn M; McGough, Lauren; Baskerville, Edward B; Abbott, Sam; Joshi, Keya; Tedijanto, Christine; Kahn, Rebecca; Niehus, Rene; Hay, James; De Salazar, Pablo M; +15 more... Hellewell, Joel; Meakin, Sophie; Munday, James; Bosse, Nikos I; Sherrat, Katharine; Thompson, Robin N; White, Laura F; Huisman, Jana S; Scire, Jérémie; Bonhoeffer, Sebastian; Stadler, Tanja; Wallinga, Jacco; Funk, Sebastian; Lipsitch, Marc; Cobey, Sarah; (2020) Practical considerations for measuring the effective reproductive number, R t. medRxiv preprint. ISSN 1468-5833 DOI: https://doi.org/10.1101/2020.06.18.20134858
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Imai, Natsuko; Gaythorpe, Katy AM; Abbott, Sam; Bhatia, Sangeeta; van Elsland, Sabine; Prem, Kiesha; Liu, Yang; Ferguson, Neil M; (2020) Adoption and impact of non-pharmaceutical interventions for COVID-19. Wellcome open research, 5. 59-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.15808.1
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Imai, Natsuko; Gaythorpe, Katy AM; Abbott, Sam; Bhatia, Sangeeta; van Elsland, Sabine; Prem, Kiesha; Liu, Yang; Ferguson, Neil M; (2020) Adoption and impact of non-pharmaceutical interventions for COVID-19. Wellcome Open Res, 5. 59-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.15808.1
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Jombart, Thibaut; van Zandvoort, Kevin; Russell, Timothy W; Jarvis, Christopher I; Gimma, Amy; Abbott, Sam; Clifford, Sam; Funk, Sebastian; Gibbs, Hamish; Liu, Yang; +6 more... Pearson, Carl AB; Bosse, Nikos I; Centre for the Mathematical Modelling of Infectious Diseases COV; Eggo, Rosalind M; Kucharski, Adam J; Edmunds, W John; Centre for the Mathematical Modelling of Infectious Diseases COV; (2020) Inferring the number of COVID-19 cases from recently reported deaths. Wellcome Open Res, 5. 78-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.15786.1
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Jombart, Thibaut; van Zandvoort, Kevin; Russell, Timothy W; Jarvis, Christopher I; Gimma, Amy; Abbott, Sam; Clifford, Sam; Funk, Sebastian; Gibbs, Hamish; Liu, Yang; +6 more... Pearson, Carl AB; Bosse, Nikos I; Centre for the Mathematical Modelling of Infectious Diseases COV; Eggo, Rosalind M; Kucharski, Adam J; Edmunds, W John; (2020) Inferring the number of COVID-19 cases from recently reported deaths. Wellcome open research, 5. 78-. DOI: https://doi.org/10.12688/wellcomeopenres.15786.1
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Pavelka, Martin; Van-Zandvoort, Kevin; Abbott, Sam; Sherratt, Katharine; Majdan, Marek; Analýz, Inštitút Zdravotných; Jarčuška, Pavol; Krajčí, Marek; Flasche, Stefan; Funk, Sebastian; (2020) The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia. MedRxiv. DOI: https://doi.org/10.1101/2020.12.02.20240648
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Price, David J; Shearer, Freya M; Meehan, Michael T; McBryde, Emma; Moss, Robert; Golding, Nick; Conway, Eamon J; Dawson, Peter; Cromer, Deborah; Wood, James; +3 more... Abbott, Sam; McVernon, Jodie; McCaw, James M; (2020) Early analysis of the Australian COVID-19 epidemic. ELIFE, 9. e58785-. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.58785
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2019

Abbott, Sam; Christensen, Hannah; Welton, Nicky J; Brooks-Pollock, Ellen; (2019) Estimating the effect of the 2005 change in BCG policy in England: a retrospective cohort study, 2000 to 2015. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 24 (49). pp. 13-21. ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2019.24.49.1900220
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2018

Stone, Jack; Fraser, Hannah; Lim, Aaron G; Walker, Josephine G; Ward, Zoe; MacGregor, Louis; Trickey, Adam; Abbott, Sam; Strathdee, Steffanie A; Abramovitz, Daniela; +33 more... Maher, Lisa; Iversen, Jenny; Bruneau, Julie; Zang, Geng; Garfein, Richard S; Yen, Yung-Fen; Azim, Tasnim; Mehta, Shruti H; Milloy, Michael-John; Hellard, Margaret E; Sacks-Davis, Rachel; Dietze, Paul M; Aitken, Campbell; Aladashvili, Malvina; Tsertsvadze, Tengiz; Mravčík, Viktor; Alary, Michel; Roy, Elise; Smyrnov, Pavlo; Sazonova, Yana; Young, April M; Havens, Jennifer R; Hope, Vivian D; Desai, Monica; Heinsbroek, Ellen; Hutchinson, Sharon J; Palmateer, Norah E; McAuley, Andrew; Platt, Lucy; Martin, Natasha K; Altice, Frederick L; Hickman, Matthew; Vickerman, Peter; (2018) Incarceration history and risk of HIV and hepatitis C virus acquisition among people who inject drugs: a systematic review and meta-analysis. The Lancet infectious diseases, 18 (12). pp. 1397-1409. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(18)30469-9
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This list was generated on Mon May 16 07:33:51 2022 BST.