Items where Author or Contributor is "Abbott, Sam"
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Number of items: 26.
2021
Davies, Nicholas G;
Abbott, Sam;
Barnard, Rosanna C;
Jarvis, Christopher I;
Kucharski, Adam J;
Munday, James D;
Pearson, Carl AB;
Russell, Timothy W;
Tully, Damien C;
Washburne, Alex D;
+15 more...
Wenseleers, Tom;
Gimma, Amy;
Waites, William;
Wong, Kerry LM;
van Zandvoort, Kevin;
Silverman, Justin D;
CMMID COVID-19 Working Group;
COVID-19 Genomics UK (COG-UK) Consortium;
Diaz-Ordaz, Karla;
Keogh, Ruth;
Eggo, Rosalind M;
Funk, Sebastian;
Jit, Mark;
Atkins, Katherine E;
Edmunds, W John;
(2021)
Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England.
Science (New York, N.Y.), 372 (6538).
eabg3055-eabg3055.
ISSN 0036-8075
DOI: https://doi.org/10.1126/science.abg3055
Leclerc, Quentin J;
Nightingale, Emily S;
Abbott, Sam;
Jombart, Thibaut;
CMMID COVID-19 Working Group;
(2021)
Analysis of temporal trends in potential COVID-19 cases reported through NHS Pathways England.
Scientific reports, 11 (1).
p. 7106.
ISSN 2045-2322
DOI: https://doi.org/10.1038/s41598-021-86266-3
Munday, James D;
Sherratt, Katharine;
Meakin, Sophie;
Endo, Akira;
Pearson, Carl AB;
Hellewell, Joel;
Abbott, Sam;
Bosse, Nikos I;
CMMID COVID-19 Working Group;
Atkins, Katherine E;
+4 more...
Wallinga, Jacco;
Edmunds, W John;
van Hoek, Albert Jan;
Funk, Sebastian;
(2021)
Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in England.
Nature communications, 12 (1).
p. 1942.
ISSN 2041-1723
DOI: https://doi.org/10.1038/s41467-021-22213-0
Sherratt, Katharine;
Abbott, Sam;
Meakin, Sophie R;
Hellewell, Joel;
Munday, James D;
Bosse, Nikos;
CMMID COVID-19 Working Group;
Jit, Mark;
Funk, Sebastian;
(2021)
Exploring surveillance data biases when estimating the reproduction number: with insights into subpopulation transmission of COVID-19 in England.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 376 (1829).
p. 20200283.
ISSN 0962-8436
DOI: https://doi.org/10.1098/rstb.2020.0283
Sherratt, Katharine;
Abbott, Sam;
Meakin, Sophie R;
Hellewell, Joel;
Munday, James D;
Bosse, Nikos;
Jit, Mark;
Funk, Sebastian;
(2021)
Exploring surveillance data biases when estimating the reproduction number: with insights into subpopulation transmission of Covid-19 in England.
Philosophical transactions of the Royal Society of London Series B, Biological sciences, 376 (1829).
ISSN 0962-8436
DOI: https://doi.org/10.1101/2020.10.18.20214585
2020
Abbott, Sam;
Hellewell, Joel;
Munday, James;
CMMID nCoV working group;
Funk, Sebastian;
(2020)
The transmissibility of novel Coronavirus in the early stages of the 2019-20 outbreak in Wuhan: Exploring initial point-source exposure sizes and durations using scenario analysis.
Wellcome open research, 5.
17-.
ISSN 2398-502X
DOI: https://doi.org/10.12688/wellcomeopenres.15718.1
Abbott, Sam;
Hellewell, Joel;
Thompson, Robin N;
Sherratt, Katharine;
Gibbs, Hamish P;
Bosse, Nikos I;
Munday, James D;
Meakin, Sophie;
Doughty, Emma L;
Chun, June Young;
+11 more...
Chan, Yung-Wai Desmond;
Finger, Flavio;
Campbell, Paul;
Endo, Akira;
Pearson, Carl AB;
Gimma, Amy;
Russell, Tim;
Flasche, Stefan;
Kucharski, Adam J;
Eggo, Rosalind M;
Funk, Sebastian;
(2020)
Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts.
Wellcome Open Research, 5.
p. 112.
DOI: https://doi.org/10.12688/wellcomeopenres.16006.1
Abbott, Sam;
Hellewell, Joel;
Thompson, Robin N;
Sherratt, Katharine;
Gibbs, Hamish P;
Bosse, Nikos I;
Munday, James D;
Meakin, Sophie;
Doughty, Emma L;
Chun, June Young;
+11 more...
Chan, Yung-Wai Desmond;
Finger, Flavio;
Campbell, Paul;
Endo, Akira;
Pearson, Carl AB;
Gimma, Amy;
Russell, Tim;
Flasche, Stefan;
Kucharski, Adam J;
Eggo, Rosalind M;
Funk, Sebastian;
(2020)
Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts.
Wellcome Open Research, 5.
p. 112.
DOI: https://doi.org/10.12688/wellcomeopenres.16006.2
Davis, Emma L;
Lucas, Tim CD;
Borlase, Anna;
Pollington, Timothy M;
Abbott, Sam;
Ayabina, Diepreye;
Crellen, Thomas;
Hellewell, Joel;
Pi, Li;
Medley, Graham F;
+2 more...
Hollingsworth, T Déirdre;
Klepac, Petra;
(2020)
An imperfect tool: contact tracing could provide valuable reductions in COVID-19 transmission if good adherence can be achieved and maintained.
medRxiv preprint.
ISSN 1468-5833
DOI: https://doi.org/10.1101/2020.06.09.20124008
Endo, Akira;
Centre for the Mathematical Modelling of Infectious Diseases COV;
Abbott, Sam;
Kucharski, Adam J;
Funk, Sebastian;
(2020)
Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China.
Wellcome Open Research, 5.
67-.
DOI: https://doi.org/10.12688/wellcomeopenres.15842.3
Funk, S;
Abbott, S;
Atkins, BD;
Baguelin, M;
Baillie, JK;
Birrell, P;
Blake, J;
Bosse, NI;
Burton, J;
Carruthers, J;
+37 more...
Davies, NG;
De Angelis, D;
Dyson, L;
Edmunds, WJ;
Eggo, RM;
Ferguson, NM;
Gaythorpe, K;
Gorsich, E;
Guyver-Fletcher, G;
Hellewell, J;
Hill, EM;
Holmes, A;
House, TA;
Jewell, C;
Jit, M;
Jombart, T;
Joshi, I;
Keeling, MJ;
Kendall, E;
Knock, ES;
Kucharski, AJ;
Lythgoe, KA;
Meakin, SR;
Munday, JD;
Openshaw, PJM;
Overton, CE;
Pagani, F;
Pearson, J;
Perez-Guzman, PN;
Pellis, L;
Scarabel, F;
Semple, MG;
Sherratt, K;
Tang, M;
Tildesley, MJ;
Van Leeuwen, E;
Whittles, LK;
(2020)
Short-term forecasts to inform the response to the Covid-19 epidemic in the UK.
medRxiv preprint - BMJ Yale.
ISSN 1468-5833
DOI: https://doi.org/10.1101/2020.11.11.20220962
Gostic, Katelyn M;
McGough, Lauren;
Baskerville, Edward B;
Abbott, Sam;
Joshi, Keya;
Tedijanto, Christine;
Kahn, Rebecca;
Niehus, Rene;
Hay, James A;
De Salazar, Pablo M;
+15 more...
Hellewell, Joel;
Meakin, Sophie;
Munday, James D;
Bosse, Nikos I;
Sherrat, Katharine;
Thompson, Robin N;
White, Laura F;
Huisman, Jana S;
Scire, Jérémie;
Bonhoeffer, Sebastian;
Stadler, Tanja;
Wallinga, Jacco;
Funk, Sebastian;
Lipsitch, Marc;
Cobey, Sarah;
(2020)
Practical considerations for measuring the effective reproductive number, Rt.
PLOS COMPUTATIONAL BIOLOGY, 16 (12).
e1008409-.
ISSN 1553-734X
DOI: https://doi.org/10.1371/journal.pcbi.1008409
Hellewell, Joel;
Abbott, Sam;
Gimma, Amy;
Bosse, Nikos I;
Jarvis, Christopher I;
Russell, Timothy W;
Munday, James D;
Kucharski, Adam J;
Edmunds, W John;
Centre for the Mathematical Modelling of Infectious Diseases COV;
+2 more...
Funk, Sebastian;
Eggo, Rosalind M;
(2020)
Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts.
The Lancet. Global health, 8 (4).
e488-e496.
ISSN 2214-109X
DOI: https://doi.org/10.1016/S2214-109X(20)30074-7
Imai, Natsuko;
Gaythorpe, Katy AM;
Abbott, Sam;
Bhatia, Sangeeta;
van Elsland, Sabine;
Prem, Kiesha;
Liu, Yang;
Ferguson, Neil M;
(2020)
Adoption and impact of non-pharmaceutical interventions for COVID-19.
Wellcome open research, 5.
59-.
ISSN 2398-502X
DOI: https://doi.org/10.12688/wellcomeopenres.15808.1
Imai, Natsuko;
Gaythorpe, Katy AM;
Abbott, Sam;
Bhatia, Sangeeta;
van Elsland, Sabine;
Prem, Kiesha;
Liu, Yang;
Ferguson, Neil M;
(2020)
Adoption and impact of non-pharmaceutical interventions for COVID-19.
Wellcome Open Res, 5.
59-.
ISSN 2398-502X
DOI: https://doi.org/10.12688/wellcomeopenres.15808.1
Jit, Mark;
Jombart, Thibaut;
Nightingale, Emily S;
Endo, Akira;
Abbott, Sam;
LSHTM Centre for Mathematical Modelling of Infectious Diseases C;
Edmunds, W John;
(2020)
Estimating number of cases and spread of coronavirus disease (COVID-19) using critical care admissions, United Kingdom, February to March 2020.
EUROSURVEILLANCE, 25 (18).
pp. 6-10.
ISSN 1560-7917
DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.18.2000632
Jombart, Thibaut;
van Zandvoort, Kevin;
Russell, Timothy W;
Jarvis, Christopher I;
Gimma, Amy;
Abbott, Sam;
Clifford, Sam;
Funk, Sebastian;
Gibbs, Hamish;
Liu, Yang;
+6 more...
Pearson, Carl AB;
Bosse, Nikos I;
Centre for the Mathematical Modelling of Infectious Diseases COV;
Eggo, Rosalind M;
Kucharski, Adam J;
Edmunds, W John;
(2020)
Inferring the number of COVID-19 cases from recently reported deaths.
Wellcome open research, 5.
78-.
DOI: https://doi.org/10.12688/wellcomeopenres.15786.1
Jombart, Thibaut;
van Zandvoort, Kevin;
Russell, Timothy W;
Jarvis, Christopher I;
Gimma, Amy;
Abbott, Sam;
Clifford, Sam;
Funk, Sebastian;
Gibbs, Hamish;
Liu, Yang;
+6 more...
Pearson, Carl AB;
Bosse, Nikos I;
Centre for the Mathematical Modelling of Infectious Diseases COV;
Eggo, Rosalind M;
Kucharski, Adam J;
Edmunds, W John;
(2020)
Inferring the number of COVID-19 cases from recently reported deaths.
medRxiv.
DOI: https://doi.org/10.1101/2020.03.10.20033761
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Pavelka, Martin;
Van-Zandvoort, Kevin;
Abbott, Sam;
Sherratt, Katharine;
Majdan, Marek;
Analýz, Inštitút Zdravotných;
Jarčuška, Pavol;
Krajčí, Marek;
Flasche, Stefan;
Funk, Sebastian;
(2020)
The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia.
MedRxiv.
DOI: https://doi.org/10.1101/2020.12.02.20240648
Price, David J;
Shearer, Freya M;
Meehan, Michael T;
McBryde, Emma;
Moss, Robert;
Golding, Nick;
Conway, Eamon J;
Dawson, Peter;
Cromer, Deborah;
Wood, James;
+3 more...
Abbott, Sam;
McVernon, Jodie;
McCaw, James M;
(2020)
Early analysis of the Australian COVID-19 epidemic.
ELIFE, 9.
e58785-.
ISSN 2050-084X
DOI: https://doi.org/10.7554/eLife.58785
Russell, Timothy W;
Golding, Nick;
Hellewell, Joel;
Abbott, Sam;
Wright, Lawrence;
Pearson, Carl AB;
Zandvoort, Kevin van;
Jarvis, Christopher I;
Gibbs, Hamish;
Liu, Yang;
+3 more...
Eggo, Rosalind M;
Edmunds, W John;
Kucharski, Adam J;
(2020)
Reconstructing the early global dynamics of under-ascertained COVID-19 cases and infections.
DOI: https://doi.org/10.1101/2020.07.07.20148460
Russell, Timothy W;
Golding, Nick;
Hellewell, Joel;
Abbott, Sam;
Wright, Lawrence;
Pearson, Carl AB;
van Zandvoort, Kevin;
Jarvis, Christopher I;
Gibbs, Hamish;
Liu, Yang;
+4 more...
Eggo, Rosalind M;
Edmunds, W John;
Kucharski, Adam J;
CMMID COVID-19 working group;
(2020)
Reconstructing the early global dynamics of under-ascertained COVID-19 cases and infections.
BMC medicine, 18 (1).
332-.
ISSN 1741-7015
DOI: https://doi.org/10.1186/s12916-020-01790-9
Russell, Timothy W;
Hellewell, Joel;
Jarvis, Christopher I;
Van Zandvoort, Kevin;
Abbott, Sam;
Ratnayake, Ruwan;
Flasche, Stefan;
Eggo, Rosalind M;
Edmunds, W John;
Kucharski, Adam J;
(2020)
Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship.
BMJ global health.
ISSN 2059-7908
DOI: https://doi.org/10.1101/2020.03.05.20031773
Russell, Timothy W;
Hellewell, Joel;
Jarvis, Christopher I;
van Zandvoort, Kevin;
Abbott, Sam;
Ratnayake, Ruwan;
Cmmid Covid-Working Group;
Flasche, Stefan;
Eggo, Rosalind M;
Edmunds, W John;
+1 more...
Kucharski, Adam J;
(2020)
Estimating the infection and case fatality ratio for coronavirus disease (COVID-19) using age-adjusted data from the outbreak on the Diamond Princess cruise ship, February 2020.
Euro Surveill, 25 (12).
ISSN 1560-7917
DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.12.2000256
2019
Abbott, Sam;
Christensen, Hannah;
Welton, Nicky J;
Brooks-Pollock, Ellen;
(2019)
Estimating the effect of the 2005 change in BCG policy in England: a retrospective cohort study, 2000 to 2015.
Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 24 (49).
ISSN 1025-496X
DOI: https://doi.org/10.2807/1560-7917.ES.2019.24.49.1900220
2018
Stone, Jack;
Fraser, Hannah;
Lim, Aaron G;
Walker, Josephine G;
Ward, Zoe;
MacGregor, Louis;
Trickey, Adam;
Abbott, Sam;
Strathdee, Steffanie A;
Abramovitz, Daniela;
+33 more...
Maher, Lisa;
Iversen, Jenny;
Bruneau, Julie;
Zang, Geng;
Garfein, Richard S;
Yen, Yung-Fen;
Azim, Tasnim;
Mehta, Shruti H;
Milloy, Michael-John;
Hellard, Margaret E;
Sacks-Davis, Rachel;
Dietze, Paul M;
Aitken, Campbell;
Aladashvili, Malvina;
Tsertsvadze, Tengiz;
Mravčík, Viktor;
Alary, Michel;
Roy, Elise;
Smyrnov, Pavlo;
Sazonova, Yana;
Young, April M;
Havens, Jennifer R;
Hope, Vivian D;
Desai, Monica;
Heinsbroek, Ellen;
Hutchinson, Sharon J;
Palmateer, Norah E;
McAuley, Andrew;
Platt, Lucy;
Martin, Natasha K;
Altice, Frederick L;
Hickman, Matthew;
Vickerman, Peter;
(2018)
Incarceration history and risk of HIV and hepatitis C virus acquisition among people who inject drugs: a systematic review and meta-analysis.
The Lancet infectious diseases, 18 (12).
pp. 1397-1409.
ISSN 1473-3099
DOI: https://doi.org/10.1016/S1473-3099(18)30469-9