EpiFusion: Joint inference of the effective reproduction number by integrating phylodynamic and epidemiological modelling with particle filtering.

Judge, Ciara; Vaughan, Timothy; Russell, Timothy; Abbott, Sam; du Plessis, Louis; Stadler, Tanja; Brady, Oliver; Hill, Sarah; (2024) EpiFusion: Joint inference of the effective reproduction number by integrating phylodynamic and epidemiological modelling with particle filtering. PLoS computational biology, 20 (11). e1012528-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1012528

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