Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; +15 more... Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; CMMID COVID-19 Working Group; COVID-19 Genomics UK (COG-UK) Consortium; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John; (2021) Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. Science (New York, N.Y.), 372 (6538). eabg3055-eabg3055. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.abg3055

Davies, Nicholas G; Flasche, Stefan; Jit, Mark; Atkins, Katherine E; (2021) Modeling the effect of vaccination on selection for antibiotic resistance in Streptococcus pneumonia e. Science translational medicine, 13 (606). eaaz8690-eaaz8690. ISSN 1946-6234 DOI: https://doi.org/10.1126/scitranslmed.aaz8690

Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J; (2021) Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. Wellcome Open Research, 5. 239-. DOI: https://doi.org/10.12688/wellcomeopenres.16344.3

Leclerc, Quentin J; Fuller, Naomi M; Keogh, Ruth H; Diaz-Ordaz, Karla; Sekula, Richard; Semple, Malcolm G; ISARIC4C Investigators; CMMID COVID-19 Working Group; Atkins, Katherine E; Procter, Simon R; +1 more... Knight, Gwenan M; ISARIC4C Investigators, CMMID COVID-19 Working Group; (2021) Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England. BMC health services research, 21 (1). 566-. ISSN 1472-6963 DOI: https://doi.org/10.1186/s12913-021-06509-x

Li, You; Hodgson, David; Wang, Xin; Atkins, Katherine E; Feikin, Daniel R; Nair, Harish; (2021) Respiratory syncytial virus seasonality and prevention strategy planning for passive immunisation of infants in low-income and middle-income countries: a modelling study. The Lancet. Infectious diseases, 21 (9). pp. 1303-1312. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(20)30703-9

Munday, JD; (2021) The Impact of Social Groups on Variation in Infectious Disease Transmission and Control. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04658953

Munday, James D; Sherratt, Katharine; Meakin, Sophie; Endo, Akira; Pearson, Carl AB; Hellewell, Joel; Abbott, Sam; Bosse, Nikos I; CMMID COVID-19 Working Group; Atkins, Katherine E; +4 more... Wallinga, Jacco; Edmunds, W John; van Hoek, Albert Jan; Funk, Sebastian; (2021) Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in England. Nature communications, 12 (1). 1942-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-22213-0

Chae, Chungman; Davies, Nicholas G; Jit, Mark; Atkins, Katherine E; (2020) Effect of Pediatric Influenza Vaccination on Antibiotic Resistance, England and Wales. Emerging infectious diseases, 26 (1). pp. 138-142. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2601.191110

Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; +13 more... Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John; (2020) Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. MedRxiv. DOI: https://doi.org/10.1101/2020.12.24.20248822 Item availability may be restricted.

Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J; (2020) Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. Wellcome open research, 5. 239-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.16344.1

Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J; (2020) Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. Wellcome Open Res, 5. 239-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.16344.2

Hodgson, David; Pebody, Richard; Panovska-Griffiths, Jasmina; Baguelin, Marc; Atkins, Katherine E; (2020) Evaluating the next generation of RSV intervention strategies: a mathematical modelling study and cost-effectiveness analysis. BMC MEDICINE, 18 (1). 348-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01802-8

Jit, Mark; Ng, Dorothy Hui Lin; Luangasanatip, Nantasit; Sandmann, Frank; Atkins, Katherine E; Robotham, Julie V; Pouwels, Koen B; (2020) Quantifying the economic cost of antibiotic resistance and the impact of related interventions: rapid methodological review, conceptual framework and recommendations for future studies. BMC MEDICINE, 18 (1). 38-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-1507-2

Villabona-Arenas, Ch Julián; Hall, Matthew; Lythgoe, Katrina A; Gaffney, Stephen G; Regoes, Roland R; Hué, Stéphane; Atkins, Katherine E; (2020) Number of HIV-1 founder variants is determined by the recency of the source partner infection. SCIENCE, 369 (6499). pp. 103-108. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.aba5443

Wuerz, Terence C; Kassim, Sameer S; Atkins, Katherine E; (2020) Acquisition of extended-spectrum beta-lactamase-producing Enterobacteriaceae (ESBL-PE) carriage after exposure to systemic antimicrobials during travel: Systematic review and meta-analysis. Travel medicine and infectious disease, 37. 101823-. ISSN 1477-8939 DOI: https://doi.org/10.1016/j.tmaid.2020.101823

Yang, Juan; Atkins, Katherine E; Feng, Luzhao; Baguelin, Marc; Wu, Peng; Yan, Han; Lau, Eric HY; Wu, Joseph T; Liu, Yang; Cowling, Benjamin J; +2 more... Jit, Mark; Yu, Hongjie; (2020) Cost-effectiveness of introducing national seasonal influenza vaccination for adults aged 60 years and above in mainland China: a modelling analysis. BMC medicine, 18 (1). 90-. DOI: https://doi.org/10.1186/s12916-020-01545-6

Capewell, Paul; Atkins, Katie; Weir, William; Jamonneau, Vincent; Camara, Mamadou; Clucas, Caroline; Swar, Nono-Raymond K; Ngoyi, Dieudonne M; Rotureau, Brice; Garside, Paul; +3 more... Galvani, Alison P; Bucheton, Bruno; MacLeod, Annette; (2019) Resolving the apparent transmission paradox of African sleeping sickness. PLOS Biology, 17 (1). e3000105-e3000105. ISSN 1545-7885 DOI: https://doi.org/10.1371/journal.pbio.3000105

Davies, Nicholas G; Flasche, Stefan; Jit, Mark; Atkins, Katherine E; (2019) Within-host dynamics shape antibiotic resistance in commensal bacteria. Nature ecology & evolution, 3 (3). pp. 440-449. DOI: https://doi.org/10.1038/s41559-018-0786-x

Hodgson, David; Atkins, Katherine E; Baguelin, Marc; Panovska-Griffiths, Jasmina; Thorrington, Dominic; van Hoek, Albert Jan; Zhao, Hongxin; Fragaszy, Ellen; Hayward, Andrew C; Pebody, Richard; (2019) Estimates for quality of life loss due to Respiratory Syncytial Virus. Influenza Other Respir Viruses, 14 (1). pp. 19-27. ISSN 1750-2640 DOI: https://doi.org/10.1111/irv.12686

Knight, Gwenan M; Davies, Nicholas G; Colijn, Caroline; Coll, Francesc; Donker, Tjibbe; Gifford, Danna R; Glover, Rebecca E; Jit, Mark; Klemm, Elizabeth; Lehtinen, Sonja; +9 more... Lindsay, Jodi A; Lipsitch, Marc; Llewelyn, Martin J; Mateus, Ana LP; Robotham, Julie V; Sharland, Mike; Stekel, Dov; Yakob, Laith; Atkins, Katherine E; (2019) Mathematical modelling for antibiotic resistance control policy: do we know enough? BMC infectious diseases, 19 (1). 1011-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-019-4630-y

Luyten, Jeroen; Kessels, Roselinde; Atkins, Katherine E; Jit, Mark; van Hoek, Albert Jan; (2019) Quantifying the public's view on social value judgments in vaccine decision-making: A discrete choice experiment. SOCIAL SCIENCE & MEDICINE, 228. pp. 181-193. ISSN 0277-9536 DOI: https://doi.org/10.1016/j.socscimed.2019.03.025

Ndeffo-Mbah, Martial L; Pandey, Abhishek; Atkins, Katherine E; Aksoy, Serap; Galvani, Alison P; (2019) The impact of vector migration on the effectiveness of strategies to control gambiense human African trypanosomiasis. PLoS neglected tropical diseases, 13 (12). e0007903-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0007903

Atkins, Katherine E; Flasche, Stefan; (2018) Vaccination to reduce antimicrobial resistance. The Lancet Global health, 6 (3). e252-. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(18)30043-3

Atkins, Katherine E; Lipsitch, Marc; (2018) Can antibiotic resistance be reduced by vaccinating against respiratory disease? The lancet Respiratory medicine, 6 (11). pp. 820-821. ISSN 2213-2600 DOI: https://doi.org/10.1016/S2213-2600(18)30328-X Full text not available from this repository.

Camacho, Anton; Bouhenia, Malika; Alyusfi, Reema; Alkohlani, Abdulhakeem; Naji, Munna Abdulla Mohammed; de Radiguès, Xavier; Abubakar, Abdinasir M; Almoalmi, Abdulkareem; Seguin, Caroline; Sagrado, Maria Jose; +16 more... Poncin, Marc; McRae, Melissa; Musoke, Mohammed; Rakesh, Ankur; Porten, Klaudia; Haskew, Christopher; Atkins, Katherine E; Eggo, Rosalind M; Azman, Andrew S; Broekhuijsen, Marije; Saatcioglu, Mehmet Akif; Pezzoli, Lorenzo; Quilici, Marie-Laure; Al-Mesbahy, Abdul Rahman; Zagaria, Nevio; Luquero, Francisco J; (2018) Cholera epidemic in Yemen, 2016-18: an analysis of surveillance data. The Lancet Global health, 6 (6). e680-e690. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(18)30230-4

Flasche, Stefan; Atkins, Katherine E; (2018) Balancing Benefits and Risks of Antibiotic Use. The Journal of infectious diseases, 218 (9). pp. 1351-1353. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiy344

Munday, James D; van Hoek, Albert Jan; Edmunds, W John; Atkins, Katherine E; (2018) Quantifying the impact of social groups and vaccination on inequalities in infectious diseases using a mathematical model. BMC medicine, 16 (1). 162-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-018-1152-1

Rock, Kat S; Ndeffo-Mbah, Martial L; Castaño, Soledad; Palmer, Cody; Pandey, Abhishek; Atkins, Katherine E; Ndung'u, Joseph M; Hollingsworth, T Déirdre; Galvani, Alison; Bever, Caitlin; +2 more... Chitnis, Nakul; Keeling, Matt J; (2018) Assessing Strategies Against Gambiense Sleeping Sickness Through Mathematical Modeling. Clinical infectious diseases, 66 (suppl_). S286-S292. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy018

Atkins, Katherine E; Lafferty, Erin I; Deeny, Sarah R; Davies, Nicholas G; Robotham, Julie V; Jit, Mark; (2017) Use of mathematical modelling to assess the impact of vaccines on antibiotic resistance. The Lancet infectious diseases, 18 (6). e204-e213. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(17)30478-4 Full text not available from this repository.

Coltart, Cordelia EM; Edmunds, W John; Atkins, Katherine E; (2017) The 2013-2016 Ebola epidemic: multidisciplinary success conceals a missed opportunity. Philosophical transactions of the Royal Society of London Series B, Biological sciences, 372 (1721). p. 20160292. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2016.0292

Hodgson, David; Baguelin, Marc; van Leeuwen, Edwin; Panovska-Griffiths, Jasmina; Ramsay, Mary; Pebody, Richard; Atkins, Katherine E; (2017) Effect of mass paediatric influenza vaccination on existing influenza vaccination programmes in England and Wales: a modelling and cost-effectiveness analysis. The lancet Public health, 2 (2). e74-e81. ISSN 2468-2667 DOI: https://doi.org/10.1016/S2468-2667(16)30044-5

Piot, Peter; Coltart, Cordelia EM; Atkins, Katherine E; (2017) Preface: 'The 2013-2016 West African Ebola epidemic: data, decision-making and disease control'. Philosophical transactions of the Royal Society of London Series B, Biological sciences, 372 (1721). p. 20170020. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2017.0020

Rock, KS; Pandey, A; Ndeffo-Mbah, ML; Atkins, KE; Lumbala, C; Galvani, A; Keeling, MJ; (2017) Data-driven models to predict the elimination of sleeping sickness in former Equateur province of DRC. Epidemics, 18. pp. 101-112. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2017.01.006

Atkins, Katherine E; Fitzpatrick, Meagan C; Galvani, Alison P; Townsend, Jeffrey P; (2016) Cost-Effectiveness of Pertussis Vaccination During Pregnancy in the United States. American journal of epidemiology, 183 (12). pp. 1159-1170. ISSN 0002-9262 DOI: https://doi.org/10.1093/aje/kwv347 Full text not available from this repository.

Atkins, Katherine E; Pandey, Abhishek; Wenzel, Natasha S; Skrip, Laura; Yamin, Dan; Nyenswah, Tolbert G; Fallah, Mosoka; Bawo, Luke; Medlock, Jan; Altice, Frederick L; +3 more... Townsend, Jeffrey; Ndeffo-Mbah, Martial L; Galvani, Alison P; (2016) Retrospective Analysis of the 2014-2015 Ebola Epidemic in Liberia. The American journal of tropical medicine and hygiene, 94 (4). pp. 833-839. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.15-0328

Atkins, Katherine; van Hoek, Albert Jan; Watson, Conall; Baguelin, Marc; Choga, Lethiwe; Patel, Anika; Raj, Thara; Jit, Mark; Griffiths, Ulla; (2016) Seasonal influenza vaccination delivery through community pharmacists in England: evaluation of the London pilot. BMJ open, 6 (2). e009739-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2015-009739

Fitzpatrick, Meagan C; Wenzel, Natasha S; Scarpino, Samuel V; Althouse, Benjamin M; Atkins, Katherine E; Galvani, Alison P; Townsend, Jeffrey P; (2016) Cost-effectiveness of next-generation vaccines: The case of pertussis. Vaccine, 34 (29). pp. 3405-3411. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.04.010

Li, Meng; Taylor, Eric G; Atkins, Katherine E; Chapman, Gretchen B; Galvani, Alison P; (2016) Stimulating Influenza Vaccination via Prosocial Motives. PloS one, 11 (7). e0159780-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0159780

Thomas, Sara L; Walker, Jemma L; Fenty, Justin; Atkins, Katherine E; Elliot, Alex J; Hughes, Helen E; Stowe, Julia; Ladhani, Shamez; Andrews, Nick J; (2016) Impact of the national rotavirus vaccination programme on acute gastroenteritis in England and associated costs averted. Vaccine, 35 (4). pp. 680-686. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.11.057

Yamin, Dan; Atkins, Katherine E; Remy, Vanessa; Galvani, Alison P; (2016) Cost-Effectiveness of Rotavirus Vaccination in France-Accounting for Indirect Protection. Value in health, 19 (6). pp. 811-819. ISSN 1098-3015 DOI: https://doi.org/10.1016/j.jval.2016.05.011

Yang, Juan; Atkins, Katherine E; Feng, Luzhao; Pang, Mingfan; Zheng, Yaming; Liu, Xinxin; Cowling, Benjamin J; Yu, Hongjie; (2016) Seasonal influenza vaccination in China: Landscape of diverse regional reimbursement policy, and budget impact analysis. Vaccine, 34 (47). pp. 5724-5735. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.10.013

Atkins, Katherine E; Wenzel, Natasha S; Ndeffo-Mbah, Martial; Altice, Frederick L; Townsend, Jeffrey P; Galvani, Alison P; (2015) Under-reporting and case fatality estimates for emerging epidemics. BMJ (Clinical research ed), 350 (mar16). h1115-. ISSN 0959-8138 DOI: https://doi.org/10.1136/bmj.h1115

Hollingsworth, T Déirdre; Adams, Emily R; Anderson, Roy M; Atkins, Katherine; Bartsch, Sarah; Basáñez, María-Gloria; Behrend, Matthew; Blok, David J; Chapman, Lloyd AC; Coffeng, Luc; +36 more... Courtenay, Orin; Crump, Ron E; de Vlas, Sake J; Dobson, Andy; Dyson, Louise; Farkas, Hajnal; Galvani, Alison P; Gambhir, Manoj; Gurarie, David; Irvine, Michael A; Jervis, Sarah; Keeling, Matt J; Kelly-Hope, Louise; King, Charles; Lee, Bruce Y; Le Rutte, Epke A; Lietman, Thomas M; Ndeffo-Mbah, Martial; Medley, Graham F; Michael, Edwin; Pandey, Abhishek; Peterson, Jennifer K; Pinsent, Amy; Porco, Travis C; Richardus, Jan Hendrik; Reimer, Lisa; Rock, Kat S; Singh, Brajendra K; Stolk, Wilma; Swaminathan, Subramanian; Torr, Steve J; Townsend, Jeffrey; Truscott, James; Walker, Martin; Zoueva, Alexandra; NTD Modelling Consortium; (2015) Quantitative analyses and modelling to support achievement of the 2020 goals for nine neglected tropical diseases. Parasites & vectors, 8 (1). 630-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-015-1235-1

Ibuka, Yoko; Ohkusa, Yasushi; Sugawara, Tamie; Chapman, Gretchen B; Yamin, Dan; Atkins, Katherine E; Taniguchi, Kiyosu; Okabe, Nobuhiko; Galvani, Alison P; (2015) Social contacts, vaccination decisions and influenza in Japan. Journal of epidemiology and community health, 70 (2). pp. 162-167. ISSN 0143-005X DOI: https://doi.org/10.1136/jech-2015-205777

Pandey, Abhishek; Atkins, Katherine E; Bucheton, Bruno; Camara, Mamadou; Aksoy, Serap; Galvani, Alison P; Ndeffo-Mbah, Martial L; (2015) Evaluating long-term effectiveness of sleeping sickness control measures in Guinea. Parasites & vectors, 8 (1). 550-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-015-1121-x

Taylor, Eric; Atkins, Katherine E; Medlock, Jan; Li, Meng; Chapman, Gretchen B; Galvani, Alison P; (2015) Cross-Cultural Household Influence on Vaccination Decisions. Medical decision making, 36 (7). pp. 844-853. ISSN 0272-989X DOI: https://doi.org/10.1177/0272989X15591007 Full text not available from this repository.

Wells, Chad; Yamin, Dan; Ndeffo-Mbah, Martial L; Wenzel, Natasha; Gaffney, Stephen G; Townsend, Jeffrey P; Meyers, Lauren Ancel; Fallah, Mosoka; Nyenswah, Tolbert G; Altice, Frederick L; +2 more... Atkins, Katherine E; Galvani, Alison P; (2015) Harnessing case isolation and ring vaccination to control Ebola. PLoS neglected tropical diseases, 9 (5). e0003794-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0003794

Pandey, Abhishek; Atkins, Katherine E; Medlock, Jan; Wenzel, Natasha; Townsend, Jeffrey P; Childs, James E; Nyenswah, Tolbert G; Ndeffo-Mbah, Martial L; Galvani, Alison P; (2014) Strategies for containing Ebola in West Africa. Science (New York, NY), 346 (6212). pp. 991-995. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.1260612 Full text not available from this repository.

Pitzer, Virginia E; Atkins, Katherine E; de Blasio, Birgitte Freiesleben; Van Effelterre, Thierry; Atchison, Christina J; Harris, John P; Shim, Eunha; Galvani, Alison P; Edmunds, W John; Viboud, Cécile; +4 more... Patel, Manish M; Grenfell, Bryan T; Parashar, Umesh D; Lopman, Ben A; (2012) Direct and indirect effects of rotavirus vaccination: comparing predictions from transmission dynamic models. PloS one, 7 (8). e42320-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0042320