Items where Author is "Atkins, Katherine E"
Number of items: 64.
2024
Reconciling founder variant multiplicity of HIV-1 infection with the rate of CD4+ decline. (2024)
Baxter, James; Villabona-Arenas, Ch Julián; Thompson, Robin N; Hué, Stéphane; Regoes, Roland R; Kouyos, Roger D; Günthard, Huldrych F; Albert, Jan; Leigh Brown, Andrew; Atkins, Katherine E
Protecting infants against RSV disease: an impact and cost-effectiveness comparison of long-acting monoclonal antibodies and maternal vaccination. (2024)
Hodgson, David; Wilkins, Neil; van Leeuwen, Edwin; Watson, Conall H; Crofts, Jonathan; Flasche, Stefan; Jit, Mark; Atkins, Katherine E
Estimating the risk and spatial spread of measles in populations with high MMR uptake: Using school-household networks to understand the 2013 to 2014 outbreak in the Netherlands. (2024)
Munday, James D; Atkins, Katherine E; Klinkenberg, Don; Meurs, Marc; Fleur, Erik; Hahné, Susan Jm; Wallinga, Jacco; Jan van Hoek, Albert
2023
Vaccination of Older Adults Against Respiratory Syncytial Virus: The Final Pieces of the Puzzle. (2023)
Atkins, Katherine E; Hodgson, David
Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis. (2023)
Baxter, James; Langhorne, Sarah; Shi, Ting; Tully, Damien C; Villabona-Arenas, Ch Julián; Hué, Stéphane; Albert, Jan; Leigh Brown, Andrew; Atkins, Katherine E
2022
Evaluating the impact of Respiratory Syncytial Virus immunisation strategies on antibiotic use and drug resistant bacterial infections in England. (2022)
Atkins, Katherine E; Hodgson, David; Jit, Mark; Davies, Nicholas G
SCoVMod – a spatially explicit mobility and deprivation adjusted model of first wave COVID-19 transmission dynamics. (2022)
Banks, Christopher J; Colman, Ewan; Doherty, Thomas; Tearne, Oliver; Arnold, Mark; Atkins, Katherine E; Balaz, Daniel; Beaunée, Gaël; Bessell, Paul R; Enright, Jessica; Kleczkowski, Adam; Rossi, Gianluigi; Ruget, Anne-Sophie; Kao, Rowland R
Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. (2022)
Endo 遠藤彰, Akira; CMMID COVID-19 Working Group; Uchida 内田満夫, Mitsuo; Liu 刘扬, Yang; Atkins, Katherine E; Kucharski, Adam J; Funk, Sebastian
Optimal Respiratory Syncytial Virus intervention programmes using Nirsevimab in England and Wales. (2022)
Hodgson, David; Koltai, Mihaly; Krauer, Fabienne; Flasche, Stefan; Jit, Mark; Atkins, Katherine E
Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves. (2022)
Lindsey, Benjamin B; Villabona-Arenas, Ch Julián; Campbell, Finlay; Keeley, Alexander J; Parker, Matthew D; Shah, Dhruv R; Parsons, Helena; Zhang, Peijun; Kakkar, Nishchay; Gallis, Marta; Foulkes, Benjamin H; Wolverson, Paige; Louka, Stavroula F; Christou, Stella; State, Amy; Johnson, Katie; Raza, Mohammad; Hsu, Sharon; Jombart, Thibaut; Cori, Anne; Sheffield COVID-19 Genomics Group; COVID-19 Genomics UK (COG-UK) consortium; CMMID COVID-19 working group; Evans, Cariad M; Partridge, David G; Atkins, Katherine E; Hué, Stéphane; de Silva, Thushan I
Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa. (2022)
Pujol-Hodge, Emma; Salazar-Gonzalez, Jesus F; Ssemwanga, Deogratius; Charlebois, Edwin D; Ayieko, James; Grant, Heather E; Liegler, Teri; Atkins, Katherine E; Kaleebu, Pontiano; Kamya, Moses R; Petersen, Maya; Havlir, Diane V; Leigh Brown, Andrew J
Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs. (2022)
Villabona-Arenas, Christian Julian; Hué, Stéphane; Baxter, James AC; Hall, Matthew; Lythgoe, Katrina A; Bradley, John; Atkins, Katherine E
2021
Drug resistance mutations in HIV: new bioinformatics approaches and challenges. (2021)
Blassel, Luc; Zhukova, Anna; Villabona-Arenas, Christian J; Atkins, Katherine E; Hué, Stéphane; Gascuel, Olivier
Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. (2021)
Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; CMMID COVID-19 Working Group; COVID-19 Genomics UK (COG-UK) Consortium; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John
Modeling the effect of vaccination on selection for antibiotic resistance in Streptococcus pneumonia e. (2021)
Davies, Nicholas G; Flasche, Stefan; Jit, Mark; Atkins, Katherine E
Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. (2021)
Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J
Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan. (2021)
Endo, Akira; Uchida, Mitsuo; Hayashi, Naoki; Liu, Yang; Atkins, Katherine E; Kucharski, Adam J; Funk, Sebastian
Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England. (2021)
Leclerc, Quentin J; Fuller, Naomi M; Keogh, Ruth H; Diaz-Ordaz, Karla; Sekula, Richard; Semple, Malcolm G; ISARIC4C Investigators; CMMID COVID-19 Working Group; Atkins, Katherine E; Procter, Simon R; Knight, Gwenan M
Respiratory syncytial virus seasonality and prevention strategy planning for passive immunisation of infants in low-income and middle-income countries: a modelling study. (2021)
Li, You; Hodgson, David; Wang, Xin; Atkins, Katherine E; Feikin, Daniel R; Nair, Harish
The Impact of Social Groups on Variation in Infectious Disease Transmission and Control. (2021)
Munday, JD
Changing socio-economic and ethnic disparities in influenza/A/H1N1 infection early in the 2009 UK epidemic: a descriptive analysis. (2021)
Munday, James D; Pebody, Richard; Atkins, Katherine E; van Hoek, Albert Jan
Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in England. (2021)
Munday, James D; Sherratt, Katharine; Meakin, Sophie; Endo, Akira; Pearson, Carl AB; Hellewell, Joel; Abbott, Sam; Bosse, Nikos I; CMMID COVID-19 Working Group; Atkins, Katherine E; Wallinga, Jacco; Edmunds, W John; van Hoek, Albert Jan; Funk, Sebastian
2020
Effect of Pediatric Influenza Vaccination on Antibiotic Resistance, England and Wales. (2020)
Chae, Chungman; Davies, Nicholas G; Jit, Mark; Atkins, Katherine E
Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. (2020)
Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John
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Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. (2020)
Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J
Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. (2020)
Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J
Evaluating the next generation of RSV intervention strategies: a mathematical modelling study and cost-effectiveness analysis. (2020)
Hodgson, David; Pebody, Richard; Panovska-Griffiths, Jasmina; Baguelin, Marc; Atkins, Katherine E
Quantifying the economic cost of antibiotic resistance and the impact of related interventions: rapid methodological review, conceptual framework and recommendations for future studies. (2020)
Jit, Mark; Ng, Dorothy Hui Lin; Luangasanatip, Nantasit; Sandmann, Frank; Atkins, Katherine E; Robotham, Julie V; Pouwels, Koen B
Number of HIV-1 founder variants is determined by the recency of the source partner infection. (2020)
Villabona-Arenas, Ch Julián; Hall, Matthew; Lythgoe, Katrina A; Gaffney, Stephen G; Regoes, Roland R; Hué, Stéphane; Atkins, Katherine E
Acquisition of extended-spectrum beta-lactamase-producing Enterobacteriaceae (ESBL-PE) carriage after exposure to systemic antimicrobials during travel: Systematic review and meta-analysis. (2020)
Wuerz, Terence C; Kassim, Sameer S; Atkins, Katherine E
Cost-effectiveness of introducing national seasonal influenza vaccination for adults aged 60 years and above in mainland China: a modelling analysis. (2020)
Yang, Juan; Atkins, Katherine E; Feng, Luzhao; Baguelin, Marc; Wu, Peng; Yan, Han; Lau, Eric HY; Wu, Joseph T; Liu, Yang; Cowling, Benjamin J; Jit, Mark; Yu, Hongjie
2019
Resolving the apparent transmission paradox of African sleeping sickness. (2018)
Capewell, Paul; Atkins, Katie; Weir, William; Jamonneau, Vincent; Camara, Mamadou; Clucas, Caroline; Swar, Nono-Raymond K; Ngoyi, Dieudonne M; Rotureau, Brice; Garside, Paul; Galvani, Alison P; Bucheton, Bruno; MacLeod, Annette
Within-host dynamics shape antibiotic resistance in commensal bacteria. (2018)
Davies, Nicholas G; Flasche, Stefan; Jit, Mark; Atkins, Katherine E
Estimates for quality of life loss due to Respiratory Syncytial Virus. (2019)
Hodgson, David; Atkins, Katherine E; Baguelin, Marc; Panovska-Griffiths, Jasmina; Thorrington, Dominic; van Hoek, Albert Jan; Zhao, Hongxin; Fragaszy, Ellen; Hayward, Andrew C; Pebody, Richard
Mathematical modelling for antibiotic resistance control policy: do we know enough? (2019)
Knight, Gwenan M; Davies, Nicholas G; Colijn, Caroline; Coll, Francesc; Donker, Tjibbe; Gifford, Danna R; Glover, Rebecca E; Jit, Mark; Klemm, Elizabeth; Lehtinen, Sonja; Lindsay, Jodi A; Lipsitch, Marc; Llewelyn, Martin J; Mateus, Ana LP; Robotham, Julie V; Sharland, Mike; Stekel, Dov; Yakob, Laith; Atkins, Katherine E
Quantifying the public's view on social value judgments in vaccine decision-making: A discrete choice experiment. (2019)
Luyten, Jeroen; Kessels, Roselinde; Atkins, Katherine E; Jit, Mark; van Hoek, Albert Jan
The impact of vector migration on the effectiveness of strategies to control gambiense human African trypanosomiasis. (2019)
Ndeffo-Mbah, Martial L; Pandey, Abhishek; Atkins, Katherine E; Aksoy, Serap; Galvani, Alison P
2018
Vaccination to reduce antimicrobial resistance. (2017)
Atkins, Katherine E; Flasche, Stefan
Can antibiotic resistance be reduced by vaccinating against respiratory disease? (2018)
Atkins, Katherine E; Lipsitch, Marc
Cholera epidemic in Yemen, 2016-18: an analysis of surveillance data. (2018)
Camacho, Anton; Bouhenia, Malika; Alyusfi, Reema; Alkohlani, Abdulhakeem; Naji, Munna Abdulla Mohammed; de Radiguès, Xavier; Abubakar, Abdinasir M; Almoalmi, Abdulkareem; Seguin, Caroline; Sagrado, Maria Jose; Poncin, Marc; McRae, Melissa; Musoke, Mohammed; Rakesh, Ankur; Porten, Klaudia; Haskew, Christopher; Atkins, Katherine E; Eggo, Rosalind M; Azman, Andrew S; Broekhuijsen, Marije; Saatcioglu, Mehmet Akif; Pezzoli, Lorenzo; Quilici, Marie-Laure; Al-Mesbahy, Abdul Rahman; Zagaria, Nevio; Luquero, Francisco J
Balancing Benefits and Risks of Antibiotic Use. (2018)
Flasche, Stefan; Atkins, Katherine E
Quantifying the impact of social groups and vaccination on inequalities in infectious diseases using a mathematical model. (2018)
Munday, James D; van Hoek, Albert Jan; Edmunds, W John; Atkins, Katherine E
Assessing Strategies Against Gambiense Sleeping Sickness Through Mathematical Modeling. (2018)
Rock, Kat S; Ndeffo-Mbah, Martial L; Castaño, Soledad; Palmer, Cody; Pandey, Abhishek; Atkins, Katherine E; Ndung'u, Joseph M; Hollingsworth, T Déirdre; Galvani, Alison; Bever, Caitlin; Chitnis, Nakul; Keeling, Matt J
2017
Use of mathematical modelling to assess the impact of vaccines on antibiotic resistance. (2017)
Atkins, Katherine E; Lafferty, Erin I; Deeny, Sarah R; Davies, Nicholas G; Robotham, Julie V; Jit, Mark
The 2013-2016 Ebola epidemic: multidisciplinary success conceals a missed opportunity. (2017)
Coltart, Cordelia EM; Edmunds, W John; Atkins, Katherine E
Effect of mass paediatric influenza vaccination on existing influenza vaccination programmes in England and Wales: a modelling and cost-effectiveness analysis. (2017)
Hodgson, David; Baguelin, Marc; van Leeuwen, Edwin; Panovska-Griffiths, Jasmina; Ramsay, Mary; Pebody, Richard; Atkins, Katherine E
Preface: 'The 2013-2016 West African Ebola epidemic: data, decision-making and disease control'. (2017)
Piot, Peter; Coltart, Cordelia EM; Atkins, Katherine E
Data-driven models to predict the elimination of sleeping sickness in former Equateur province of DRC. (2017)
Rock, KS; Pandey, A; Ndeffo-Mbah, ML; Atkins, KE; Lumbala, C; Galvani, A; Keeling, MJ
2016
Cost-Effectiveness of Pertussis Vaccination During Pregnancy in the United States. (2016)
Atkins, Katherine E; Fitzpatrick, Meagan C; Galvani, Alison P; Townsend, Jeffrey P
Retrospective Analysis of the 2014-2015 Ebola Epidemic in Liberia. (2016)
Atkins, Katherine E; Pandey, Abhishek; Wenzel, Natasha S; Skrip, Laura; Yamin, Dan; Nyenswah, Tolbert G; Fallah, Mosoka; Bawo, Luke; Medlock, Jan; Altice, Frederick L; Townsend, Jeffrey; Ndeffo-Mbah, Martial L; Galvani, Alison P
Seasonal influenza vaccination delivery through community pharmacists in England: evaluation of the London pilot. (2016)
Atkins, Katherine; van Hoek, Albert Jan; Watson, Conall; Baguelin, Marc; Choga, Lethiwe; Patel, Anika; Raj, Thara; Jit, Mark; Griffiths, Ulla
Cost-effectiveness of next-generation vaccines: The case of pertussis. (2016)
Fitzpatrick, Meagan C; Wenzel, Natasha S; Scarpino, Samuel V; Althouse, Benjamin M; Atkins, Katherine E; Galvani, Alison P; Townsend, Jeffrey P
Stimulating Influenza Vaccination via Prosocial Motives. (2016)
Li, Meng; Taylor, Eric G; Atkins, Katherine E; Chapman, Gretchen B; Galvani, Alison P
Impact of the national rotavirus vaccination programme on acute gastroenteritis in England and associated costs averted. (2016)
Thomas, Sara L; Walker, Jemma L; Fenty, Justin; Atkins, Katherine E; Elliot, Alex J; Hughes, Helen E; Stowe, Julia; Ladhani, Shamez; Andrews, Nick J
Cost-Effectiveness of Rotavirus Vaccination in France-Accounting for Indirect Protection. (2016)
Yamin, Dan; Atkins, Katherine E; Remy, Vanessa; Galvani, Alison P
Seasonal influenza vaccination in China: Landscape of diverse regional reimbursement policy, and budget impact analysis. (2016)
Yang, Juan; Atkins, Katherine E; Feng, Luzhao; Pang, Mingfan; Zheng, Yaming; Liu, Xinxin; Cowling, Benjamin J; Yu, Hongjie
2015
Under-reporting and case fatality estimates for emerging epidemics. (2015)
Atkins, Katherine E; Wenzel, Natasha S; Ndeffo-Mbah, Martial; Altice, Frederick L; Townsend, Jeffrey P; Galvani, Alison P
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Quantitative analyses and modelling to support achievement of the 2020 goals for nine neglected tropical diseases. (2015)
Hollingsworth, T Déirdre; Adams, Emily R; Anderson, Roy M; Atkins, Katherine; Bartsch, Sarah; Basáñez, María-Gloria; Behrend, Matthew; Blok, David J; Chapman, Lloyd AC; Coffeng, Luc; Courtenay, Orin; Crump, Ron E; de Vlas, Sake J; Dobson, Andy; Dyson, Louise; Farkas, Hajnal; Galvani, Alison P; Gambhir, Manoj; Gurarie, David; Irvine, Michael A; Jervis, Sarah; Keeling, Matt J; Kelly-Hope, Louise; King, Charles; Lee, Bruce Y; Le Rutte, Epke A; Lietman, Thomas M; Ndeffo-Mbah, Martial; Medley, Graham F; Michael, Edwin; Pandey, Abhishek; Peterson, Jennifer K; Pinsent, Amy; Porco, Travis C; Richardus, Jan Hendrik; Reimer, Lisa; Rock, Kat S; Singh, Brajendra K; Stolk, Wilma; Swaminathan, Subramanian; Torr, Steve J; Townsend, Jeffrey; Truscott, James; Walker, Martin; Zoueva, Alexandra; NTD Modelling Consortium
Social contacts, vaccination decisions and influenza in Japan. (2015)
Ibuka, Yoko; Ohkusa, Yasushi; Sugawara, Tamie; Chapman, Gretchen B; Yamin, Dan; Atkins, Katherine E; Taniguchi, Kiyosu; Okabe, Nobuhiko; Galvani, Alison P
Evaluating long-term effectiveness of sleeping sickness control measures in Guinea. (2015)
Pandey, Abhishek; Atkins, Katherine E; Bucheton, Bruno; Camara, Mamadou; Aksoy, Serap; Galvani, Alison P; Ndeffo-Mbah, Martial L
Cross-Cultural Household Influence on Vaccination Decisions. (2015)
Taylor, Eric; Atkins, Katherine E; Medlock, Jan; Li, Meng; Chapman, Gretchen B; Galvani, Alison P
Harnessing case isolation and ring vaccination to control Ebola. (2015)
Wells, Chad; Yamin, Dan; Ndeffo-Mbah, Martial L; Wenzel, Natasha; Gaffney, Stephen G; Townsend, Jeffrey P; Meyers, Lauren Ancel; Fallah, Mosoka; Nyenswah, Tolbert G; Altice, Frederick L; Atkins, Katherine E; Galvani, Alison P
2012
Direct and indirect effects of rotavirus vaccination: comparing predictions from transmission dynamic models. (2012)
Pitzer, Virginia E; Atkins, Katherine E; de Blasio, Birgitte Freiesleben; Van Effelterre, Thierry; Atchison, Christina J; Harris, John P; Shim, Eunha; Galvani, Alison P; Edmunds, W John; Viboud, Cécile; Patel, Manish M; Grenfell, Bryan T; Parashar, Umesh D; Lopman, Ben A
