Items where Author or Contributor is "Atkins, Katherine E"

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Number of items: 61.

2024

2023

Baxter, James; Langhorne, Sarah; Shi, Ting; Tully, Damien C; Villabona-Arenas, Ch Julián; Hué, Stéphane; Albert, Jan; Leigh Brown, Andrew; Atkins, Katherine E; (2023) Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis. Lancet Microbe, 4 (2). e102-e112. ISSN 2666-5247 DOI: https://doi.org/10.1016/S2666-5247(22)00327-5
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2022

Banks, Christopher J; Colman, Ewan; Doherty, Thomas; Tearne, Oliver; Arnold, Mark; Atkins, Katherine E; Balaz, Daniel; Beaunée, Gaël; Bessell, Paul R; Enright, Jessica; +4 more... Kleczkowski, Adam; Rossi, Gianluigi; Ruget, Anne-Sophie; Kao, Rowland R; (2022) SCoVMod – a spatially explicit mobility and deprivation adjusted model of first wave COVID-19 transmission dynamics. Wellcome Open Research, 7. p. 161. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.17716.1
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Endo 遠藤彰, Akira; CMMID COVID-19 Working Group; Uchida 内田満夫, Mitsuo; Liu 刘扬, Yang; Atkins, Katherine E; Kucharski, Adam J; Funk, Sebastian; (2022) Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. Proceedings of the National Academy of Sciences of the United States of America, 119 (37). e2203019119-. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.2203019119
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Lindsey, Benjamin B; Villabona-Arenas, Ch Julián; Campbell, Finlay; Keeley, Alexander J; Parker, Matthew D; Shah, Dhruv R; Parsons, Helena; Zhang, Peijun; Kakkar, Nishchay; Gallis, Marta; +18 more... Foulkes, Benjamin H; Wolverson, Paige; Louka, Stavroula F; Christou, Stella; State, Amy; Johnson, Katie; Raza, Mohammad; Hsu, Sharon; Jombart, Thibaut; Cori, Anne; Sheffield COVID-19 Genomics Group; COVID-19 Genomics UK (COG-UK) consortium; CMMID COVID-19 working group; Evans, Cariad M; Partridge, David G; Atkins, Katherine E; Hué, Stéphane; de Silva, Thushan I; (2022) Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves. Nature communications, 13 (1). 671-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-022-28291-y
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Pujol-Hodge, Emma; Salazar-Gonzalez, Jesus F; Ssemwanga, Deogratius; Charlebois, Edwin D; Ayieko, James; Grant, Heather E; Liegler, Teri; Atkins, Katherine E; Kaleebu, Pontiano; Kamya, Moses R; +3 more... Petersen, Maya; Havlir, Diane V; Leigh Brown, Andrew J; (2022) Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa. Viruses, 14 (8). p. 1673. ISSN 1999-4915 DOI: https://doi.org/10.3390/v14081673
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Villabona-Arenas, Christian Julian; Hué, Stéphane; Baxter, James AC; Hall, Matthew; Lythgoe, Katrina A; Bradley, John; Atkins, Katherine E; (2022) Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs. Proceedings of the National Academy of Sciences of the United States of America, 119 (38). e2210604119-. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.2210604119
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2021

Blassel, Luc; Zhukova, Anna; Villabona-Arenas, Christian J; Atkins, Katherine E; Hué, Stéphane; Gascuel, Olivier; (2021) Drug resistance mutations in HIV: new bioinformatics approaches and challenges. Current opinion in virology, 51. pp. 56-64. ISSN 1879-6257 DOI: https://doi.org/10.1016/j.coviro.2021.09.009
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Leclerc, Quentin J; Fuller, Naomi M; Keogh, Ruth H; Diaz-Ordaz, Karla; Sekula, Richard; Semple, Malcolm G; ISARIC4C Investigators; CMMID COVID-19 Working Group; Atkins, Katherine E; Procter, Simon R; +1 more... Knight, Gwenan M; ISARIC4C Investigators, CMMID COVID-19 Working Group; (2021) Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England. BMC health services research, 21 (1). 566-. ISSN 1472-6963 DOI: https://doi.org/10.1186/s12913-021-06509-x
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Munday, James D; Pebody, Richard; Atkins, Katherine E; van Hoek, Albert Jan; (2021) Changing socio-economic and ethnic disparities in influenza/A/H1N1 infection early in the 2009 UK epidemic: a descriptive analysis. BMC INFECTIOUS DISEASES, 21 (1). 1243-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-021-06936-5
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2020

Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; +13 more... Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John; (2020) Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. MedRxiv. DOI: https://doi.org/10.1101/2020.12.24.20248822 Item availability may be restricted.
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Villabona-Arenas, Ch Julián; Hall, Matthew; Lythgoe, Katrina A; Gaffney, Stephen G; Regoes, Roland R; Hué, Stéphane; Atkins, Katherine E; (2020) Number of HIV-1 founder variants is determined by the recency of the source partner infection. SCIENCE, 369 (6499). pp. 103-108. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.aba5443
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2019

Capewell, Paul; Atkins, Katie; Weir, William; Jamonneau, Vincent; Camara, Mamadou; Clucas, Caroline; Swar, Nono-Raymond K; Ngoyi, Dieudonne M; Rotureau, Brice; Garside, Paul; +3 more... Galvani, Alison P; Bucheton, Bruno; MacLeod, Annette; (2019) Resolving the apparent transmission paradox of African sleeping sickness. PLOS Biology, 17 (1). e3000105-. ISSN 1545-7885 DOI: https://doi.org/10.1371/journal.pbio.3000105
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Hodgson, David; Atkins, Katherine E; Baguelin, Marc; Panovska-Griffiths, Jasmina; Thorrington, Dominic; van Hoek, Albert Jan; Zhao, Hongxin; Fragaszy, Ellen; Hayward, Andrew C; Pebody, Richard; (2019) Estimates for quality of life loss due to Respiratory Syncytial Virus. Influenza Other Respir Viruses, 14 (1). pp. 19-27. ISSN 1750-2640 DOI: https://doi.org/10.1111/irv.12686
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Knight, Gwenan M; Davies, Nicholas G; Colijn, Caroline; Coll, Francesc; Donker, Tjibbe; Gifford, Danna R; Glover, Rebecca E; Jit, Mark; Klemm, Elizabeth; Lehtinen, Sonja; +9 more... Lindsay, Jodi A; Lipsitch, Marc; Llewelyn, Martin J; Mateus, Ana LP; Robotham, Julie V; Sharland, Mike; Stekel, Dov; Yakob, Laith; Atkins, Katherine E; (2019) Mathematical modelling for antibiotic resistance control policy: do we know enough? BMC infectious diseases, 19 (1). 1011-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-019-4630-y
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Ndeffo-Mbah, Martial L; Pandey, Abhishek; Atkins, Katherine E; Aksoy, Serap; Galvani, Alison P; (2019) The impact of vector migration on the effectiveness of strategies to control gambiense human African trypanosomiasis. PLoS neglected tropical diseases, 13 (12). e0007903-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0007903
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2018

Atkins, Katherine E; Lipsitch, Marc; (2018) Can antibiotic resistance be reduced by vaccinating against respiratory disease? The lancet Respiratory medicine, 6 (11). pp. 820-821. ISSN 2213-2600 DOI: https://doi.org/10.1016/S2213-2600(18)30328-X Full text not available from this repository.

Camacho, Anton; Bouhenia, Malika; Alyusfi, Reema; Alkohlani, Abdulhakeem; Naji, Munna Abdulla Mohammed; de Radiguès, Xavier; Abubakar, Abdinasir M; Almoalmi, Abdulkareem; Seguin, Caroline; Sagrado, Maria Jose; +16 more... Poncin, Marc; McRae, Melissa; Musoke, Mohammed; Rakesh, Ankur; Porten, Klaudia; Haskew, Christopher; Atkins, Katherine E; Eggo, Rosalind M; Azman, Andrew S; Broekhuijsen, Marije; Saatcioglu, Mehmet Akif; Pezzoli, Lorenzo; Quilici, Marie-Laure; Al-Mesbahy, Abdul Rahman; Zagaria, Nevio; Luquero, Francisco J; (2018) Cholera epidemic in Yemen, 2016-18: an analysis of surveillance data. The Lancet Global health, 6 (6). e680-e690. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(18)30230-4
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Flasche, Stefan; Atkins, Katherine E; (2018) Balancing Benefits and Risks of Antibiotic Use. The Journal of infectious diseases, 218 (9). pp. 1351-1353. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiy344
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Rock, Kat S; Ndeffo-Mbah, Martial L; Castaño, Soledad; Palmer, Cody; Pandey, Abhishek; Atkins, Katherine E; Ndung'u, Joseph M; Hollingsworth, T Déirdre; Galvani, Alison; Bever, Caitlin; +2 more... Chitnis, Nakul; Keeling, Matt J; (2018) Assessing Strategies Against Gambiense Sleeping Sickness Through Mathematical Modeling. Clinical infectious diseases, 66 (suppl_). S286-S292. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy018
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2017

Atkins, Katherine E; Lafferty, Erin I; Deeny, Sarah R; Davies, Nicholas G; Robotham, Julie V; Jit, Mark; (2017) Use of mathematical modelling to assess the impact of vaccines on antibiotic resistance. The Lancet infectious diseases, 18 (6). e204-e213. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(17)30478-4 Full text not available from this repository.

Coltart, Cordelia EM; Edmunds, W John; Atkins, Katherine E; (2017) The 2013-2016 Ebola epidemic: multidisciplinary success conceals a missed opportunity. Philosophical transactions of the Royal Society of London Series B, Biological sciences, 372 (1721). p. 20160292. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2016.0292
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Piot, Peter; Coltart, Cordelia EM; Atkins, Katherine E; (2017) Preface: 'The 2013-2016 West African Ebola epidemic: data, decision-making and disease control'. Philosophical transactions of the Royal Society of London Series B, Biological sciences, 372 (1721). p. 20170020. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2017.0020
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Rock, KS; Pandey, A; Ndeffo-Mbah, ML; Atkins, KE; Lumbala, C; Galvani, A; Keeling, MJ; (2017) Data-driven models to predict the elimination of sleeping sickness in former Equateur province of DRC. Epidemics, 18. pp. 101-112. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2017.01.006
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2016

Atkins, Katherine E; Fitzpatrick, Meagan C; Galvani, Alison P; Townsend, Jeffrey P; (2016) Cost-Effectiveness of Pertussis Vaccination During Pregnancy in the United States. American journal of epidemiology, 183 (12). pp. 1159-1170. ISSN 0002-9262 DOI: https://doi.org/10.1093/aje/kwv347 Full text not available from this repository.

Atkins, Katherine E; Pandey, Abhishek; Wenzel, Natasha S; Skrip, Laura; Yamin, Dan; Nyenswah, Tolbert G; Fallah, Mosoka; Bawo, Luke; Medlock, Jan; Altice, Frederick L; +3 more... Townsend, Jeffrey; Ndeffo-Mbah, Martial L; Galvani, Alison P; (2016) Retrospective Analysis of the 2014-2015 Ebola Epidemic in Liberia. The American journal of tropical medicine and hygiene, 94 (4). pp. 833-839. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.15-0328
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Fitzpatrick, Meagan C; Wenzel, Natasha S; Scarpino, Samuel V; Althouse, Benjamin M; Atkins, Katherine E; Galvani, Alison P; Townsend, Jeffrey P; (2016) Cost-effectiveness of next-generation vaccines: The case of pertussis. Vaccine, 34 (29). pp. 3405-3411. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.04.010
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Li, Meng; Taylor, Eric G; Atkins, Katherine E; Chapman, Gretchen B; Galvani, Alison P; (2016) Stimulating Influenza Vaccination via Prosocial Motives. PloS one, 11 (7). e0159780-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0159780
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Yamin, Dan; Atkins, Katherine E; Remy, Vanessa; Galvani, Alison P; (2016) Cost-Effectiveness of Rotavirus Vaccination in France-Accounting for Indirect Protection. Value in health, 19 (6). pp. 811-819. ISSN 1098-3015 DOI: https://doi.org/10.1016/j.jval.2016.05.011
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Yang, Juan; Atkins, Katherine E; Feng, Luzhao; Pang, Mingfan; Zheng, Yaming; Liu, Xinxin; Cowling, Benjamin J; Yu, Hongjie; (2016) Seasonal influenza vaccination in China: Landscape of diverse regional reimbursement policy, and budget impact analysis. Vaccine, 34 (47). pp. 5724-5735. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.10.013
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2015

Atkins, Katherine E; Wenzel, Natasha S; Ndeffo-Mbah, Martial; Altice, Frederick L; Townsend, Jeffrey P; Galvani, Alison P; (2015) Under-reporting and case fatality estimates for emerging epidemics. BMJ (Clinical research ed), 350 (mar16 ). h1115-. ISSN 0959-8138 DOI: https://doi.org/10.1136/bmj.h1115
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Hollingsworth, T Déirdre; Adams, Emily R; Anderson, Roy M; Atkins, Katherine; Bartsch, Sarah; Basáñez, María-Gloria; Behrend, Matthew; Blok, David J; Chapman, Lloyd AC; Coffeng, Luc; +36 more... Courtenay, Orin; Crump, Ron E; de Vlas, Sake J; Dobson, Andy; Dyson, Louise; Farkas, Hajnal; Galvani, Alison P; Gambhir, Manoj; Gurarie, David; Irvine, Michael A; Jervis, Sarah; Keeling, Matt J; Kelly-Hope, Louise; King, Charles; Lee, Bruce Y; Le Rutte, Epke A; Lietman, Thomas M; Ndeffo-Mbah, Martial; Medley, Graham F; Michael, Edwin; Pandey, Abhishek; Peterson, Jennifer K; Pinsent, Amy; Porco, Travis C; Richardus, Jan Hendrik; Reimer, Lisa; Rock, Kat S; Singh, Brajendra K; Stolk, Wilma; Swaminathan, Subramanian; Torr, Steve J; Townsend, Jeffrey; Truscott, James; Walker, Martin; Zoueva, Alexandra; NTD Modelling Consortium; (2015) Quantitative analyses and modelling to support achievement of the 2020 goals for nine neglected tropical diseases. Parasites & vectors, 8 (1). 630-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-015-1235-1
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Ibuka, Yoko; Ohkusa, Yasushi; Sugawara, Tamie; Chapman, Gretchen B; Yamin, Dan; Atkins, Katherine E; Taniguchi, Kiyosu; Okabe, Nobuhiko; Galvani, Alison P; (2015) Social contacts, vaccination decisions and influenza in Japan. Journal of epidemiology and community health, 70 (2). pp. 162-167. ISSN 0143-005X DOI: https://doi.org/10.1136/jech-2015-205777
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Pandey, Abhishek; Atkins, Katherine E; Bucheton, Bruno; Camara, Mamadou; Aksoy, Serap; Galvani, Alison P; Ndeffo-Mbah, Martial L; (2015) Evaluating long-term effectiveness of sleeping sickness control measures in Guinea. Parasites & vectors, 8 (1). 550-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-015-1121-x
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Taylor, Eric; Atkins, Katherine E; Medlock, Jan; Li, Meng; Chapman, Gretchen B; Galvani, Alison P; (2015) Cross-Cultural Household Influence on Vaccination Decisions. Medical decision making, 36 (7). pp. 844-853. ISSN 0272-989X DOI: https://doi.org/10.1177/0272989X15591007 Full text not available from this repository.

Wells, Chad; Yamin, Dan; Ndeffo-Mbah, Martial L; Wenzel, Natasha; Gaffney, Stephen G; Townsend, Jeffrey P; Meyers, Lauren Ancel; Fallah, Mosoka; Nyenswah, Tolbert G; Altice, Frederick L; +2 more... Atkins, Katherine E; Galvani, Alison P; (2015) Harnessing case isolation and ring vaccination to control Ebola. PLoS neglected tropical diseases, 9 (5). e0003794-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0003794
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2014

Pandey, Abhishek; Atkins, Katherine E; Medlock, Jan; Wenzel, Natasha; Townsend, Jeffrey P; Childs, James E; Nyenswah, Tolbert G; Ndeffo-Mbah, Martial L; Galvani, Alison P; (2014) Strategies for containing Ebola in West Africa. Science (New York, NY), 346 (6212). pp. 991-995. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.1260612 Full text not available from this repository.

2012

Pitzer, Virginia E; Atkins, Katherine E; de Blasio, Birgitte Freiesleben; Van Effelterre, Thierry; Atchison, Christina J; Harris, John P; Shim, Eunha; Galvani, Alison P; Edmunds, W John; Viboud, Cécile; +4 more... Patel, Manish M; Grenfell, Bryan T; Parashar, Umesh D; Lopman, Ben A; (2012) Direct and indirect effects of rotavirus vaccination: comparing predictions from transmission dynamic models. PloS one, 7 (8). e42320-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0042320
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This list was generated on Fri Jun 14 06:54:17 2024 BST.