Items where Author or Contributor is "Jombart, T"
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Number of items: 49.
2021
Jombart, Thibaut;
(2021)
Why development of outbreak analytics tools should be valued, supported, and funded.
The Lancet Infectious diseases.
ISSN 1473-3099
DOI: https://doi.org/10.1016/S1473-3099(20)30996-8
Item availability may be restricted.
2020
Jit, Mark;
Jombart, Thibaut;
Nightingale, Emily S;
Endo, Akira;
Abbott, Sam;
LSHTM Centre for Mathematical Modelling of Infectious Diseases C;
Edmunds, W John;
(2020)
Estimating number of cases and spread of coronavirus disease (COVID-19) using critical care admissions, United Kingdom, February to March 2020.
EUROSURVEILLANCE, 25 (18).
pp. 6-10.
ISSN 1560-7917
DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.18.2000632
Jombart, Thibaut;
Jarvis, Christopher I;
Mesfin, Samuel;
Tabal, Nabil;
Mossoko, Mathias;
Mpia, Luigino Minikulu;
Abedi, Aaron Aruna;
Chene, Sonia;
Forbin, Ekokobe Elias;
Belizaire, Marie Roseline D;
+13 more...
de Radiguès, Xavier;
Ngombo, Richy;
Tutu, Yannick;
Finger, Flavio;
Crowe, Madeleine;
Edmunds, W John;
Nsio, Justus;
Yam, Abdoulaye;
Diallo, Boubacar;
Gueye, Abdou Salam;
Ahuka-Mundeke, Steve;
Yao, Michel;
Fall, Ibrahima Socé;
(2020)
The cost of insecurity: from flare-up to control of a major Ebola virus disease hotspot during the outbreak in the Democratic Republic of the Congo, 2019.
Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 25 (2).
pp. 19-22.
ISSN 1025-496X
DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.2.1900735
Item availability may be restricted.
Jombart, Thibaut;
van Zandvoort, Kevin;
Russell, Timothy W;
Jarvis, Christopher I;
Gimma, Amy;
Abbott, Sam;
Clifford, Sam;
Funk, Sebastian;
Gibbs, Hamish;
Liu, Yang;
+6 more...
Pearson, Carl AB;
Bosse, Nikos I;
Centre for the Mathematical Modelling of Infectious Diseases COV;
Eggo, Rosalind M;
Kucharski, Adam J;
Edmunds, W John;
(2020)
Inferring the number of COVID-19 cases from recently reported deaths.
medRxiv.
DOI: https://doi.org/10.1101/2020.03.10.20033761
Jombart, Thibaut;
van Zandvoort, Kevin;
Russell, Timothy W;
Jarvis, Christopher I;
Gimma, Amy;
Abbott, Sam;
Clifford, Sam;
Funk, Sebastian;
Gibbs, Hamish;
Liu, Yang;
+6 more...
Pearson, Carl AB;
Bosse, Nikos I;
Centre for the Mathematical Modelling of Infectious Diseases COV;
Eggo, Rosalind M;
Kucharski, Adam J;
Edmunds, W John;
(2020)
Inferring the number of COVID-19 cases from recently reported deaths.
Wellcome open research, 5.
78-.
DOI: https://doi.org/10.12688/wellcomeopenres.15786.1
Parisi, Andrea;
Le Thi Phuong, Tu;
Mather, Alison E;
Jombart, Thibaut;
Thanh Tuyen, Ha;
Phu Huong Lan, Nguyen;
Hoang Thu Trang, Nguyen;
Carrique-Mas, Juan;
Campbell, James I;
Glass, Kathryn;
+2 more...
Kirk, Martyn D;
Baker, Stephen;
(2020)
Differential antimicrobial susceptibility profiles between symptomatic and asymptomatic non-typhoidal Salmonella infections in Vietnamese children.
EPIDEMIOLOGY AND INFECTION, 148.
e144.
ISSN 0950-2688
DOI: https://doi.org/10.1017/S0950268820001168
Rees, Eleanor M;
Nightingale, Emily S;
Jafari, Yalda;
Waterlow, Naomi R;
Clifford, Samuel;
B Pearson, Carl A;
Group, Cmmid Working;
Jombart, Thibaut;
Procter, Simon R;
Knight, Gwenan M;
(2020)
COVID-19 length of hospital stay: a systematic review and data synthesis.
BMC MEDICINE, 18 (1).
270-.
ISSN 1741-7015
DOI: https://doi.org/10.1186/s12916-020-01726-3
2019
Campbell, Finlay;
Cori, Anne;
Ferguson, Neil;
Jombart, Thibaut;
(2019)
Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data.
PLOS COMPUTATIONAL BIOLOGY, 15 (3).
e1006930-.
ISSN 1553-734X
DOI: https://doi.org/10.1371/journal.pcbi.1006930
Dighe, Amy;
Jombart, Thibaut;
Van Kerkhove, Maria D;
Ferguson, Neil;
(2019)
A systematic review of MERS-CoV seroprevalence and RNA prevalence in dromedary camels: Implications for animal vaccination.
Epidemics, 29.
100350-.
ISSN 1755-4365
DOI: https://doi.org/10.1016/j.epidem.2019.100350
Kamvar, Zhian N;
Cai, Jun;
Pulliam, Juliet RC;
Schumacher, Jakob;
Jombart, Thibaut;
(2019)
Epidemic curves made easy using the R package incidence.
F1000Research, 8.
139-.
ISSN 2046-1402
DOI: https://doi.org/10.12688/f1000research.18002.1
Polonsky, Jonathan A;
Baidjoe, Amrish;
Kamvar, Zhian N;
Cori, Anne;
Durski, Kara;
Edmunds, W John;
Eggo, Rosalind M;
Funk, Sebastian;
Kaiser, Laurent;
Keating, Patrick;
+9 more...
de Waroux, Olivier le Polain;
Marks, Michael;
Moraga, Paula;
Morgan, Oliver;
Nouvellet, Pierre;
Ratnayake, Ruwan;
Roberts, Chrissy H;
Whitworth, Jimmy;
Jombart, Thibaut;
(2019)
Outbreak analytics: a developing data science for informing the response to emerging pathogens.
Philosophical Transactions of the Royal Society B: Biological Sciences, 374 (1776).
20180276-.
ISSN 0962-8436
DOI: https://doi.org/10.1098/rstb.2018.0276
Sewell, Thomas R;
Zhu, Jianing;
Rhodes, Johanna;
Hagen, Ferry;
Meis, Jacques F;
Fisher, Matthew C;
Jombart, Thibaut;
(2019)
Nonrandom Distribution of Azole Resistance across the Global Population of Aspergillus fumigatus.
mBio, 10 (3).
ISSN 2150-7511
DOI: https://doi.org/10.1128/mBio.00392-19
Thompson, RN;
Stockwin, JE;
van Gaalen, RD;
Polonsky, JA;
Kamvar, ZN;
Demarsh, PA;
Dahlqwist, E;
Li, S;
Miguel, E;
Jombart, T;
+3 more...
Lessler, J;
Cauchemez, S;
Cori, A;
(2019)
Improved inference of time-varying reproduction numbers during infectious disease outbreaks.
Epidemics, 29.
100356-.
ISSN 1755-4365
DOI: https://doi.org/10.1016/j.epidem.2019.100356
Weinert, Lucy A;
Chaudhuri, Roy R;
Wang, Jinhong;
Peters, Sarah E;
Corander, Jukka;
Jombart, Thibaut;
Baig, Abiyad;
Howell, Kate J;
Vehkala, Minna;
Välimäki, Niko;
+17 more...
Harris, David;
Chieu, Tran Thi Bich;
Van Vinh Chau, Nguyen;
Campbell, James;
Schultsz, Constance;
Parkhill, Julian;
Bentley, Stephen D;
Langford, Paul R;
Rycroft, Andrew N;
Wren, Brendan W;
Farrar, Jeremy;
Baker, Stephen;
Hoa, Ngo Thi;
Holden, Matthew TG;
Tucker, Alexander W;
Maskell, Duncan J;
BRaDP1T Consortium;
(2019)
Publisher Correction: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.
NATURE COMMUNICATIONS, 10 (1).
p. 5326.
ISSN 2041-1723
DOI: https://doi.org/10.1038/s41467-019-13138-w
2018
Beugin, Marie-Pauline;
Gayet, Thibault;
Pontier, Dominique;
Devillard, Sébastien;
Jombart, Thibaut;
(2018)
A fast likelihood solution to the genetic clustering problem.
METHODS IN ECOLOGY AND EVOLUTION, 9 (4).
pp. 1006-1016.
ISSN 2041-210X
DOI: https://doi.org/10.1111/2041-210X.12968
Campbell, Finlay;
Didelot, Xavier;
Fitzjohn, Rich;
Ferguson, Neil;
Cori, Anne;
Jombart, Thibaut;
(2018)
outbreaker2: a modular platform for outbreak reconstruction.
BMC BIOINFORMATICS, 19 (Suppl).
363-.
ISSN 1471-2105
DOI: https://doi.org/10.1186/s12859-018-2330-z
Campbell, Finlay;
Strang, Camilla;
Ferguson, Neil;
Cori, Anne;
Jombart, Thibaut;
(2018)
When are pathogen genome sequences informative of transmission events?
PLOS PATHOGENS, 14 (2).
e1006885-.
ISSN 1553-7366
DOI: https://doi.org/10.1371/journal.ppat.1006885
Cori, Anne;
Nouvellet, Pierre;
Garske, Tini;
Bourhy, Hervé;
Nakouné, Emmanuel;
Jombart, Thibaut;
(2018)
A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies.
PLOS COMPUTATIONAL BIOLOGY, 14 (12).
e1006554-.
ISSN 1553-7358
DOI: https://doi.org/10.1371/journal.pcbi.1006554
Dupuis, Julian R;
Bremer, Forest T;
Jombart, Thibaut;
Sim, Sheina B;
Geib, Scott M;
(2018)
mvmapper: Interactive spatial mapping of genetic structures.
Molecular Ecology Resources, 18 (2).
pp. 362-367.
ISSN 1755-098X
DOI: https://doi.org/10.1111/1755-0998.12724
Moraga, Paula;
Dorigatti, Ilaria;
Kamvar, Zhian N;
Piatkowski, Pawel;
Toikkanen, Salla E;
Nagraj, VP;
Donnelly, Christl A;
Jombart, Thibaut;
(2018)
epiflows: an R package for risk assessment of travel-related spread of disease.
F1000Research, 7.
1374-.
ISSN 2046-1402
DOI: https://doi.org/10.12688/f1000research.16032.3
Nagraj, VP;
Randhawa, Nistara;
Campbell, Finlay;
Crellen, Thomas;
Sudre, Bertrand;
Jombart, Thibaut;
(2018)
epicontacts: Handling, visualisation and analysis of epidemiological contacts.
F1000Research, 7.
566-.
ISSN 2046-1402
DOI: https://doi.org/10.12688/f1000research.14492.2
Nouvellet, Pierre;
Cori, Anne;
Garske, Tini;
Blake, Isobel M;
Dorigatti, Ilaria;
Hinsley, Wes;
Jombart, Thibaut;
Mills, Harriet L;
Nedjati-Gilani, Gemma;
Van Kerkhove, Maria D;
+4 more...
Fraser, Christophe;
Donnelly, Christl A;
Ferguson, Neil M;
Riley, Steven;
(2018)
A simple approach to measure transmissibility and forecast incidence.
EPIDEMICS, 22.
pp. 29-35.
ISSN 1755-4365
DOI: https://doi.org/10.1016/j.epidem.2017.02.012
2017
Bertranpetit, Emilie;
Jombart, Thibaut;
Paradis, Emmanuel;
Pena, Hilda;
Dubey, Jitender;
Su, Chunlei;
Mercier, Aurélien;
Devillard, Sébastien;
Ajzenberg, Daniel;
(2017)
Phylogeography of Toxoplasma gondii points to a South American origin.
INFECTION GENETICS AND EVOLUTION, 48.
pp. 150-155.
ISSN 1567-1348
DOI: https://doi.org/10.1016/j.meegid.2016.12.020
Cori, Anne;
Donnelly, Christl A;
Dorigatti, Ilaria;
Ferguson, Neil M;
Fraser, Christophe;
Garske, Tini;
Jombart, Thibaut;
Nedjati-Gilani, Gemma;
Nouvellet, Pierre;
Riley, Steven;
+3 more...
Van Kerkhove, Maria D;
Mills, Harriet L;
Blake, Isobel M;
(2017)
Key data for outbreak evaluation: building on the Ebola experience.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 372 (1721).
p. 20160371.
ISSN 0962-8436
DOI: https://doi.org/10.1098/rstb.2016.0371
Garske, Tini;
Cori, Anne;
Ariyarajah, Archchun;
Blake, Isobel M;
Dorigatti, Ilaria;
Eckmanns, Tim;
Fraser, Christophe;
Hinsley, Wes;
Jombart, Thibaut;
Mills, Harriet L;
+11 more...
Nedjati-Gilani, Gemma;
Newton, Emily;
Nouvellet, Pierre;
Perkins, Devin;
Riley, Steven;
Schumacher, Dirk;
Shah, Anita;
Van Kerkhove, Maria D;
Dye, Christopher;
Ferguson, Neil M;
Donnelly, Christl A;
(2017)
Heterogeneities in the case fatality ratio in the West African Ebola outbreak 2013-2016.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 372 (1721).
p. 20160308.
ISSN 0962-8436
DOI: https://doi.org/10.1098/rstb.2016.0308
Jombart, Thibaut;
Archer, Frederick;
Schliep, Klaus;
Kamvar, Zhian;
Harris, Rebecca;
Paradis, Emmanuel;
Goudet, Jerome;
Lapp, Hilmar;
(2017)
apex: phylogenetics with multiple genes.
[Conference or Workshop Item]
https://doi.org/10.1111/1755-0998.12567
Jombart, Thibaut;
Kendall, Michelle;
Almagro-Garcia, Jacob;
Colijn, Caroline;
(2017)
treespace: Statistical exploration of landscapes of phylogenetic trees.
MOLECULAR ECOLOGY RESOURCES, 17 (6).
pp. 1385-1392.
ISSN 1755-098X
DOI: https://doi.org/10.1111/1755-0998.12676
Montano, V;
Jombart, T;
(2017)
An Eigenvalue test for spatial principal component analysis.
BMC BIOINFORMATICS, 18 (1).
562-.
ISSN 1471-2105
DOI: https://doi.org/10.1186/s12859-017-1988-y
2016
Clare, Frances C;
Halder, Julia B;
Daniel, Olivia;
Bielby, Jon;
Semenov, Mikhail A;
Jombart, Thibaut;
Loyau, Adeline;
Schmeller, Dirk S;
Cunningham, Andrew A;
Rowcliffe, Marcus;
+3 more...
Garner, Trenton WJ;
Bosch, Jaime;
Fisher, Matthew C;
(2016)
Climate forcing of an emerging pathogenic fungus across a montane multi-host community.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 371 (1709).
p. 20150454.
ISSN 0962-8436
DOI: https://doi.org/10.1098/rstb.2015.0454
Dallman, Tim;
Inns, Thomas;
Jombart, Thibaut;
Ashton, Philip;
Loman, Nicolas;
Chatt, Carol;
Messelhaeusser, Ute;
Rabsch, Wolfgang;
Simon, Sandra;
Nikisins, Sergejs;
+9 more...
Bernard, Helen;
le Hello, Simon;
Jourdan da-Silva, Nathalie;
Kornschober, Christian;
Mossong, Joel;
Hawkey, Peter;
de Pinna, Elizabeth;
Grant, Kathie;
Cleary, Paul;
(2016)
Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network.
MICROBIAL GENOMICS, 2 (8).
e000070-.
ISSN 2057-5858
DOI: https://doi.org/10.1099/mgen.0.000070
International Ebola Response Team;
Agua-Agum, Junerlyn;
Ariyarajah, Archchun;
Aylward, Bruce;
Bawo, Luke;
Bilivogui, Pepe;
Blake, Isobel M;
Brennan, Richard J;
Cawthorne, Amy;
Cleary, Eilish;
+53 more...
Clement, Peter;
Conteh, Roland;
Cori, Anne;
Dafae, Foday;
Dahl, Benjamin;
Dangou, Jean-Marie;
Diallo, Boubacar;
Donnelly, Christl A;
Dorigatti, Ilaria;
Dye, Christopher;
Eckmanns, Tim;
Fallah, Mosoka;
Ferguson, Neil M;
Fiebig, Lena;
Fraser, Christophe;
Garske, Tini;
Gonzalez, Lice;
Hamblion, Esther;
Hamid, Nuha;
Hersey, Sara;
Hinsley, Wes;
Jambei, Amara;
Jombart, Thibaut;
Kargbo, David;
Keita, Sakoba;
Kinzer, Michael;
George, Fred Kuti;
Godefroy, Beatrice;
Gutierrez, Giovanna;
Kannangarage, Niluka;
Mills, Harriet L;
Moller, Thomas;
Meijers, Sascha;
Mohamed, Yasmine;
Morgan, Oliver;
Nedjati-Gilani, Gemma;
Newton, Emily;
Nouvellet, Pierre;
Nyenswah, Tolbert;
Perea, William;
Perkins, Devin;
Riley, Steven;
Rodier, Guenael;
Rondy, Marc;
Sagrado, Maria;
Savulescu, Camelia;
Schafer, Ilana J;
Schumacher, Dirk;
Seyler, Thomas;
Shah, Anita;
Van Kerkhove, Maria D;
Wesseh, C Samford;
Yoti, Zabulon;
(2016)
Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study.
PLOS MEDICINE, 13 (11).
e1002170-.
ISSN 1549-1676
DOI: https://doi.org/10.1371/journal.pmed.1002170
Karkey, Abhilasha;
Jombart, Thibaut;
Walker, Alan W;
Thompson, Corinne N;
Torres, Andres;
Dongol, Sabina;
Tran Vu Thieu, Nga;
Pham Thanh, Duy;
Tran Thi Ngoc, Dung;
Voong Vinh, Phat;
+6 more...
Singer, Andrew C;
Parkhill, Julian;
Thwaites, Guy;
Basnyat, Buddha;
Ferguson, Neil;
Baker, Stephen;
(2016)
The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water.
PLOS NEGLECTED TROPICAL DISEASES, 10 (1).
e0004346-.
ISSN 1935-2735
DOI: https://doi.org/10.1371/journal.pntd.0004346
WHO Ebola Response Team;
Agua-Agum, Junerlyn;
Allegranzi, Benedetta;
Ariyarajah, Archchun;
Aylward, R Bruce;
Blake, Isobel M;
Barboza, Philippe;
Bausch, Daniel;
Brennan, Richard J;
Clement, Peter;
+40 more...
Coffey, Pasqualina;
Cori, Anne;
Donnelly, Christl A;
Dorigatti, Ilaria;
Drury, Patrick;
Durski, Kara;
Dye, Christopher;
Eckmanns, Tim;
Ferguson, Neil M;
Fraser, Christophe;
Garcia, Erika;
Garske, Tini;
Gasasira, Alex;
Gurry, Céline;
Hamblion, Esther;
Hinsley, Wes;
Holden, Robert;
Holmes, David;
Hugonnet, Stéphane;
Jaramillo Gutierrez, Giovanna;
Jombart, Thibaut;
Kelley, Edward;
Santhana, Ravi;
Mahmoud, Nuha;
Mills, Harriet L;
Mohamed, Yasmine;
Musa, Emmanuel;
Naidoo, Dhamari;
Nedjati-Gilani, Gemma;
Newton, Emily;
Norton, Ian;
Nouvellet, Pierre;
Perkins, Devin;
Perkins, Mark;
Riley, Steven;
Schumacher, Dirk;
Shah, Anita;
Tang, Minh;
Varsaneux, Olivia;
Van Kerkhove, Maria D;
(2016)
After Ebola in West Africa--Unpredictable Risks, Preventable Epidemics.
NEW ENGLAND JOURNAL OF MEDICINE, 375 (6).
pp. 587-596.
ISSN 0028-4793
DOI: https://doi.org/10.1056/NEJMsr1513109
2015
Chung The, Hao;
Karkey, Abhilasha;
Pham Thanh, Duy;
Boinett, Christine J;
Cain, Amy K;
Ellington, Matthew;
Baker, Kate S;
Dongol, Sabina;
Thompson, Corinne;
Harris, Simon R;
+11 more...
Jombart, Thibaut;
Le Thi Phuong, Tu;
Tran Do Hoang, Nhu;
Ha Thanh, Tuyen;
Shretha, Shrijana;
Joshi, Suchita;
Basnyat, Buddha;
Thwaites, Guy;
Thomson, Nicholas R;
Rabaa, Maia A;
Baker, Stephen;
(2015)
A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae.
EMBO molecular medicine, 7 (3).
pp. 227-239.
ISSN 1757-4676
DOI: https://doi.org/10.15252/emmm.201404767
Nouvellet, Pierre;
Garske, Tini;
Mills, Harriet L;
Nedjati-Gilani, Gemma;
Hinsley, Wes;
Blake, Isobel M;
Van Kerkhove, Maria D;
Cori, Anne;
Dorigatti, Ilaria;
Jombart, Thibaut;
+4 more...
Riley, Steven;
Fraser, Christophe;
Donnelly, Christl A;
Ferguson, Neil M;
(2015)
The role of rapid diagnostics in managing Ebola epidemics.
NATURE, 528 (7580).
S109-S116.
ISSN 0028-0836
DOI: https://doi.org/10.1038/nature16041
WHO Ebola Response Team;
Agua-Agum, Junerlyn;
Ariyarajah, Archchun;
Blake, Isobel M;
Cori, Anne;
Donnelly, Christl A;
Dorigatti, Ilaria;
Dye, Christopher;
Eckmanns, Tim;
Ferguson, Neil M;
+14 more...
Fowler, Robert A;
Fraser, Christophe;
Garske, Tini;
Hinsley, Wes;
Jombart, Thibaut;
Mills, Harriet L;
Murthy, Srinivas;
Nedjati Gilani, Gemma;
Nouvellet, Pierre;
Pelletier, Louise;
Riley, Steven;
Schumacher, Dirk;
Shah, Anita;
Van Kerkhove, Maria D;
(2015)
Ebola virus disease among children in West Africa.
NEW ENGLAND JOURNAL OF MEDICINE, 372 (13).
pp. 1274-1277.
ISSN 0028-4793
DOI: https://doi.org/10.1056/NEJMc1415318
Weinert, Lucy A;
Chaudhuri, Roy R;
Wang, Jinhong;
Peters, Sarah E;
Corander, Jukka;
Jombart, Thibaut;
Baig, Abiyad;
Howell, Kate J;
Vehkala, Minna;
Välimäki, Niko;
+17 more...
Harris, David;
Chieu, Tran Thi Bich;
Chau, Nguyen Van Vinh;
Campbell, James;
Schultsz, Constance;
Parkhill, Julian;
Bentley, Stephen D;
Langford, Paul R;
Rycroft, Andrew N;
Wren, Brendan W;
Farrar, Jeremy;
Baker, Stephen;
Hoa, Ngo Thi;
Holden, Matthew TG;
Tucker, Alexander W;
Maskell, Duncan J;
BRaDP1T Consortium;
(2015)
Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.
Nature communications, 6 (1).
7272-.
ISSN 2041-1723
DOI: https://doi.org/10.1038/ncomms8272
Weinert, Lucy A;
Chaudhuri, Roy R;
Wang, Jinhong;
Peters, Sarah E;
Corander, Jukka;
Jombart, Thibaut;
Baig, Abiyad;
Howell, Kate J;
Vehkala, Minna;
Välimäki, Niko;
+17 more...
Harris, David;
Chieu, Tran Thi Bich;
Van Vinh Chau, Nguyen;
Campbell, James;
Schultsz, Constance;
Parkhill, Julian;
Bentley, Stephen D;
Langford, Paul R;
Rycroft, Andrew N;
Wren, Brendan W;
Farrar, Jeremy;
Baker, Stephen;
Hoa, Ngo Thi;
Holden, Matthew TG;
Tucker, Alexander W;
Maskell, Duncan J;
BRaDP1T Consortium;
(2015)
Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.
Nature communications, 6 (1).
6740-.
ISSN 2041-1723
DOI: https://doi.org/10.1038/ncomms7740
2014
Jombart, Thibaut;
Aanensen, David M;
Baguelin, Marc;
Birrell, Paul;
Cauchemez, Simon;
Camacho, Anton;
Colijn, Caroline;
Collins, Caitlin;
Cori, Anne;
Didelot, Xavier;
+13 more...
Fraser, Christophe;
Frost, Simon;
Hens, Niel;
Hugues, Joseph;
Höhle, Michael;
Opatowski, Lulla;
Rambaut, Andrew;
Ratmann, Oliver;
Soubeyrand, Samuel;
Suchard, Marc A;
Wallinga, Jacco;
Ypma, Rolf;
Ferguson, Neil;
(2014)
OutbreakTools: a new platform for disease outbreak analysis using the R software.
Epidemics, 7.
pp. 28-34.
ISSN 1755-4365
DOI: https://doi.org/10.1016/j.epidem.2014.04.003
Jombart, Thibaut;
Cori, Anne;
Didelot, Xavier;
Cauchemez, Simon;
Fraser, Christophe;
Ferguson, Neil;
(2014)
Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data.
PLOS COMPUTATIONAL BIOLOGY, 10 (1).
e1003457-.
ISSN 1553-734X
DOI: https://doi.org/10.1371/journal.pcbi.1003457
WHO Ebola Response Team;
Aylward, Bruce;
Barboza, Philippe;
Bawo, Luke;
Bertherat, Eric;
Bilivogui, Pepe;
Blake, Isobel;
Brennan, Rick;
Briand, Sylvie;
Chakauya, Jethro Magwati;
+52 more...
Chitala, Kennedy;
Conteh, Roland M;
Cori, Anne;
Croisier, Alice;
Dangou, Jean-Marie;
Diallo, Boubacar;
Donnelly, Christl A;
Dye, Christopher;
Eckmanns, Tim;
Ferguson, Neil M;
Formenty, Pierre;
Fuhrer, Caroline;
Fukuda, Keiji;
Garske, Tini;
Gasasira, Alex;
Gbanyan, Stephen;
Graaff, Peter;
Heleze, Emmanuel;
Jambai, Amara;
Jombart, Thibaut;
Kasolo, Francis;
Kadiobo, Albert Mbule;
Keita, Sakoba;
Kertesz, Daniel;
Koné, Moussa;
Lane, Chris;
Markoff, Jered;
Massaquoi, Moses;
Mills, Harriet;
Mulba, John Mike;
Musa, Emmanuel;
Myhre, Joel;
Nasidi, Abdusalam;
Nilles, Eric;
Nouvellet, Pierre;
Nshimirimana, Deo;
Nuttall, Isabelle;
Nyenswah, Tolbert;
Olu, Olushayo;
Pendergast, Scott;
Perea, William;
Polonsky, Jonathan;
Riley, Steven;
Ronveaux, Olivier;
Sakoba, Keita;
Santhana Gopala Krishnan, Ravi;
Senga, Mikiko;
Shuaib, Faisal;
Van Kerkhove, Maria D;
Vaz, Rui;
Wijekoon Kannangarage, Niluka;
Yoti, Zabulon;
(2014)
Ebola virus disease in West Africa--the first 9 months of the epidemic and forward projections.
NEW ENGLAND JOURNAL OF MEDICINE, 371 (16).
pp. 1481-1495.
ISSN 0028-4793
DOI: https://doi.org/10.1056/NEJMoa1411100
2010
Jombart, T;
Eggo, RM;
Dodd, PJ;
Balloux, F;
(2010)
Reconstructing disease outbreaks from genetic data: a graph approach.
Heredity, 106 (2).
pp. 383-390.
ISSN 0018-067X
DOI: https://doi.org/10.1038/hdy.2010.78
Full text not available from this repository.
Jombart, Thibaut;
Devillard, Sébastien;
Balloux, François;
(2010)
Discriminant analysis of principal components: a new method for the analysis of genetically structured populations.
BMC GENETICS, 11 (1).
94-.
ISSN 1471-2156
DOI: https://doi.org/10.1186/1471-2156-11-94
Morelli, Giovanna;
Song, Yajun;
Mazzoni, Camila J;
Eppinger, Mark;
Roumagnac, Philippe;
Wagner, David M;
Feldkamp, Mirjam;
Kusecek, Barica;
Vogler, Amy J;
Li, Yanjun;
+14 more...
Cui, Yujun;
Thomson, Nicholas R;
Jombart, Thibaut;
Leblois, Raphael;
Lichtner, Peter;
Rahalison, Lila;
Petersen, Jeannine M;
Balloux, Francois;
Keim, Paul;
Wirth, Thierry;
Ravel, Jacques;
Yang, Ruifu;
Carniel, Elisabeth;
Achtman, Mark;
(2010)
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity.
Nature genetics, 42 (12).
pp. 1140-1143.
ISSN 1061-4036
DOI: https://doi.org/10.1038/ng.705
Nübel, Ulrich;
Dordel, Janina;
Kurt, Kevin;
Strommenger, Birgit;
Westh, Henrik;
Shukla, Sanjay K;
Zemlicková, Helena;
Leblois, Raphaël;
Wirth, Thierry;
Jombart, Thibaut;
+2 more...
Balloux, François;
Witte, Wolfgang;
(2010)
A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus.
PLOS PATHOGENS, 6 (4).
e1000855-.
ISSN 1553-7366
DOI: https://doi.org/10.1371/journal.ppat.1000855
2009
Balloux, François;
Handley, Lori-Jayne Lawson;
Jombart, Thibaut;
Liu, Hua;
Manica, Andrea;
(2009)
Climate shaped the worldwide distribution of human mitochondrial DNA sequence variation.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 276 (1672).
pp. 3447-3455.
ISSN 0962-8452
DOI: https://doi.org/10.1098/rspb.2009.0752
Fraser, Christophe;
Donnelly, Christl A;
Cauchemez, Simon;
Hanage, William P;
Van Kerkhove, Maria D;
Hollingsworth, T Déirdre;
Griffin, Jamie;
Baggaley, Rebecca F;
Jenkins, Helen E;
Lyons, Emily J;
+18 more...
Jombart, Thibaut;
Hinsley, Wes R;
Grassly, Nicholas C;
Balloux, Francois;
Ghani, Azra C;
Ferguson, Neil M;
Rambaut, Andrew;
Pybus, Oliver G;
Lopez-Gatell, Hugo;
Alpuche-Aranda, Celia M;
Chapela, Ietza Bojorquez;
Zavala, Ethel Palacios;
Guevara, Dulce Ma Espejo;
Checchi, Francesco;
Garcia, Erika;
Hugonnet, Stephane;
Roth, Cathy;
WHO Rapid Pandemic Assessment Collaboration;
(2009)
Pandemic potential of a strain of influenza A (H1N1): early findings.
Science (New York, NY), 324 (5934).
pp. 1557-1561.
ISSN 0036-8075
DOI: https://doi.org/10.1126/science.1176062
Full text not available from this repository.
Jombart, Thibaut;
Eggo, Rosalind M;
Dodd, Pete;
Balloux, Francois;
(2009)
Spatiotemporal dynamics in the early stages of the 2009 A/H1N1 influenza pandemic.
PLoS currents, 1 (AUG).
RRN1026-.
ISSN 2157-3999
DOI: https://doi.org/10.1371/currents.rrn1026
2007
Laloë, Denis;
Jombart, Thibaut;
Dufour, Anne-Béatrice;
Moazami-Goudarzi, Katayoun;
(2007)
Consensus genetic structuring and typological value of markers using multiple co-inertia analysis.
GENETICS SELECTION EVOLUTION, 39 (5).
pp. 545-567.
ISSN 0999-193X
DOI: https://doi.org/10.1186/1297-9686-39-5-545
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