Year Item Type Full Text

2024

Collaborative outbreak modelling for decision support: evaluating trade-offs from multi-model combination. (2024) Sherratt, K

Improving modelling for epidemic responses: reflections from members of the UK infectious disease modelling community on their experiences during the COVID-19 pandemic. (2024) Sherratt, Katharine; Carnegie, Anna C; Kucharski, Adam; Cori, Anne; Pearson, Carl AB; Jarvis, Christopher I; Overton, Christopher; Weston, Dale; Hill, Edward M; Knock, Edward; Fearon, Elizabeth; Nightingale, Emily; Hellewell, Joel; Edmunds, W John; Villabona Arenas, Julián; Prem, Kiesha; Pi, Li; Baguelin, Marc; Kendall, Michelle; Ferguson, Neil; Davies, Nicholas; Eggo, Rosalind M; van Elsland, Sabine; Russell, Timothy; Funk, Sebastian; Liu, Yang; Abbott, Sam

Characterising information gains and losses when collecting multiple epidemic model outputs. (2024) Sherratt, Katharine; Srivastava, Ajitesh; Ainslie, Kylie; Singh, David E; Cublier, Aymar; Marinescu, Maria Cristina; Carretero, Jesus; Garcia, Alberto Cascajo; Franco, Nicolas; Willem, Lander; Abrams, Steven; Faes, Christel; Beutels, Philippe; Hens, Niel; Müller, Sebastian; Charlton, Billy; Ewert, Ricardo; Paltra, Sydney; Rakow, Christian; Rehmann, Jakob; Conrad, Tim; Schütte, Christof; Nagel, Kai; Abbott, Sam; Grah, Rok; Niehus, Rene; Prasse, Bastian; Sandmann, Frank; Funk, Sebastian picture_as_pdf

2022

Estimation of the test to test distribution as a proxy for generation interval distribution for the Omicron variant in England. (2022) Abbott, Sam; Sherratt, Katharine; Gerstung, Moritz; Funk, Sebastian

Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States. (2022) Cramer, Estee Y; Ray, Evan L; Lopez, Velma K; Bracher, Johannes; Brennen, Andrea; Castro Rivadeneira, Alvaro J; Gerding, Aaron; Gneiting, Tilmann; House, Katie H; Huang, Yuxin; Jayawardena, Dasuni; Kanji, Abdul H; Khandelwal, Ayush; Le, Khoa; Mühlemann, Anja; Niemi, Jarad; Shah, Apurv; Stark, Ariane; Wang, Yijin; Wattanachit, Nutcha; Zorn, Martha W; Gu, Youyang; Jain, Sansiddh; Bannur, Nayana; Deva, Ayush; Kulkarni, Mihir; Merugu, Srujana; Raval, Alpan; Shingi, Siddhant; Tiwari, Avtansh; White, Jerome; Abernethy, Neil F; Woody, Spencer; Dahan, Maytal; Fox, Spencer; Gaither, Kelly; Lachmann, Michael; Meyers, Lauren Ancel; Scott, James G; Tec, Mauricio; Srivastava, Ajitesh; George, Glover E; Cegan, Jeffrey C; Dettwiller, Ian D; England, William P; Farthing, Matthew W; Hunter, Robert H; Lafferty, Brandon; Linkov, Igor; Mayo, Michael L; Parno, Matthew D; Rowland, Michael A; Trump, Benjamin D; Zhang-James, Yanli; Chen, Samuel; Faraone, Stephen V; Hess, Jonathan; Morley, Christopher P; Salekin, Asif; Wang, Dongliang; Corsetti, Sabrina M; Baer, Thomas M; Eisenberg, Marisa C; Falb, Karl; Huang, Yitao; Martin, Emily T; McCauley, Ella; Myers, Robert L; Schwarz, Tom; Sheldon, Daniel; Gibson, Graham Casey; Yu, Rose; Gao, Liyao; Ma, Yian; Wu, Dongxia; Yan, Xifeng; Jin, Xiaoyong; Wang, Yu-Xiang; Chen, YangQuan; Guo, Lihong; Zhao, Yanting; Gu, Quanquan; Chen, Jinghui; Wang, Lingxiao; Xu, Pan; Zhang, Weitong; Zou, Difan; Biegel, Hannah; Lega, Joceline; McConnell, Steve; Nagraj, VP; Guertin, Stephanie L; Hulme-Lowe, Christopher; Turner, Stephen D; Shi, Yunfeng; Ban, Xuegang; Walraven, Robert; Hong, Qi-Jun; Kong, Stanley; van de Walle, Axel; Turtle, James A; Ben-Nun, Michal; Riley, Steven; Riley, Pete; Koyluoglu, Ugur; DesRoches, David; Forli, Pedro; Hamory, Bruce; Kyriakides, Christina; Leis, Helen; Milliken, John; Moloney, Michael; Morgan, James; Nirgudkar, Ninad; Ozcan, Gokce; Piwonka, Noah; Ravi, Matt; Schrader, Chris; Shakhnovich, Elizabeth; Siegel, Daniel; Spatz, Ryan; Stiefeling, Chris; Wilkinson, Barrie; Wong, Alexander; Cavany, Sean; España, Guido; Moore, Sean; Oidtman, Rachel; Perkins, Alex; Kraus, David; Kraus, Andrea; Gao, Zhifeng; Bian, Jiang; Cao, Wei; Lavista Ferres, Juan; Li, Chaozhuo; Liu, Tie-Yan; Xie, Xing; Zhang, Shun; Zheng, Shun; Vespignani, Alessandro; Chinazzi, Matteo; Davis, Jessica T; Mu, Kunpeng; Pastore Y Piontti, Ana; Xiong, Xinyue; Zheng, Andrew; Baek, Jackie; Farias, Vivek; Georgescu, Andreea; Levi, Retsef; Sinha, Deeksha; Wilde, Joshua; Perakis, Georgia; Bennouna, Mohammed Amine; Nze-Ndong, David; Singhvi, Divya; Spantidakis, Ioannis; Thayaparan, Leann; Tsiourvas, Asterios; Sarker, Arnab; Jadbabaie, Ali; Shah, Devavrat; Della Penna, Nicolas; Celi, Leo A; Sundar, Saketh; Wolfinger, Russ; Osthus, Dave; Castro, Lauren; Fairchild, Geoffrey; Michaud, Isaac; Karlen, Dean; Kinsey, Matt; Mullany, Luke C; Rainwater-Lovett, Kaitlin; Shin, Lauren; Tallaksen, Katharine; Wilson, Shelby; Lee, Elizabeth C; Dent, Juan; Grantz, Kyra H; Hill, Alison L; Kaminsky, Joshua; Kaminsky, Kathryn; Keegan, Lindsay T; Lauer, Stephen A; Lemaitre, Joseph C; Lessler, Justin; Meredith, Hannah R; Perez-Saez, Javier; Shah, Sam; Smith, Claire P; Truelove, Shaun A; Wills, Josh; Marshall, Maximilian; Gardner, Lauren; Nixon, Kristen; Burant, John C; Wang, Lily; Gao, Lei; Gu, Zhiling; Kim, Myungjin; Li, Xinyi; Wang, Guannan; Wang, Yueying; Yu, Shan; Reiner, Robert C; Barber, Ryan; Gakidou, Emmanuela; Hay, Simon I; Lim, Steve; Murray, Chris; Pigott, David; Gurung, Heidi L; Baccam, Prasith; Stage, Steven A; Suchoski, Bradley T; Prakash, B Aditya; Adhikari, Bijaya; Cui, Jiaming; Rodríguez, Alexander; Tabassum, Anika; Xie, Jiajia; Keskinocak, Pinar; Asplund, John; Baxter, Arden; Oruc, Buse Eylul; Serban, Nicoleta; Arik, Sercan O; Dusenberry, Mike; Epshteyn, Arkady; Kanal, Elli; Le, Long T; Li, Chun-Liang; Pfister, Tomas; Sava, Dario; Sinha, Rajarishi; Tsai, Thomas; Yoder, Nate; Yoon, Jinsung; Zhang, Leyou; Abbott, Sam; Bosse, Nikos I; Funk, Sebastian; Hellewell, Joel; Meakin, Sophie R; Sherratt, Katharine; Zhou, Mingyuan; Kalantari, Rahi; Yamana, Teresa K; Pei, Sen; Shaman, Jeffrey; Li, Michael L; Bertsimas, Dimitris; Skali Lami, Omar; Soni, Saksham; Tazi Bouardi, Hamza; Ayer, Turgay; Adee, Madeline; Chhatwal, Jagpreet; Dalgic, Ozden O; Ladd, Mary A; Linas, Benjamin P; Mueller, Peter; Xiao, Jade; Wang, Yuanjia; Wang, Qinxia; Xie, Shanghong; Zeng, Donglin; Green, Alden; Bien, Jacob; Brooks, Logan; Hu, Addison J; Jahja, Maria; McDonald, Daniel; Narasimhan, Balasubramanian; Politsch, Collin; Rajanala, Samyak; Rumack, Aaron; Simon, Noah; Tibshirani, Ryan J; Tibshirani, Rob; Ventura, Valerie; Wasserman, Larry; O'Dea, Eamon B; Drake, John M; Pagano, Robert; Tran, Quoc T; Ho, Lam Si Tung; Huynh, Huong; Walker, Jo W; Slayton, Rachel B; Johansson, Michael A; Biggerstaff, Matthew; Reich, Nicholas G

Comparative assessment of methods for short-term forecasts of COVID-19 hospital admissions in England at the local level. (2022) Meakin, Sophie; Abbott, Sam; Bosse, Nikos; Munday, James; Gruson, Hugo; Hellewell, Joel; Sherratt, Katharine; CMMID COVID-19 Working Group; Funk, Sebastian

2021

Estimating the annual dengue force of infection from the age of reporting primary infections across urban centres in endemic countries. (2021) Biggs, Joseph R; Sy, Ava Kristy; Sherratt, Katharine; Brady, Oliver J; Kucharski, Adam J; Funk, Sebastian; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Avelino, Ferchito L; Sucaldito, Nemia L; Tandoc, Amado O; la Paz, Eva Cutiongco-de; Capeding, Maria Rosario Z; Padilla, Carmencita D; Hafalla, Julius Clemence R; Hibberd, Martin L

Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in England. (2021) Munday, James D; Sherratt, Katharine; Meakin, Sophie; Endo, Akira; Pearson, Carl AB; Hellewell, Joel; Abbott, Sam; Bosse, Nikos I; CMMID COVID-19 Working Group; Atkins, Katherine E; Wallinga, Jacco; Edmunds, W John; van Hoek, Albert Jan; Funk, Sebastian

covidregionaldata: Subnational data for COVID-19 epidemiology. (2021) Palmer, Joseph; Sherratt, Katharine; Martin-Nielsen, Richard; Bevan, Jonnie; Gibbs, Hamish; Group, Cmmid; Funk, Sebastian; Abbott, Sam

The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia. (2021) Pavelka, Martin; Van-Zandvoort, Kevin; Abbott, Sam; Sherratt, Katharine; Majdan, Marek; CMMID COVID-19 working group; Inštitút Zdravotných Analýz; Jarčuška, Pavol; Krajčí, Marek; Flasche, Stefan; Funk, Sebastian

Exploring surveillance data biases when estimating the reproduction number: with insights into subpopulation transmission of COVID-19 in England. (2021) Sherratt, Katharine; Abbott, Sam; Meakin, Sophie R; Hellewell, Joel; Munday, James D; Bosse, Nikos; CMMID COVID-19 Working Group; Jit, Mark; Funk, Sebastian

2020

Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts. (2020) Abbott, Sam; Hellewell, Joel; Thompson, Robin N; Sherratt, Katharine; Gibbs, Hamish P; Bosse, Nikos I; Munday, James D; Meakin, Sophie; Doughty, Emma L; Chun, June Young; Chan, Yung-Wai Desmond; Finger, Flavio; Campbell, Paul; Endo, Akira; Pearson, Carl AB; Gimma, Amy; Russell, Tim; Flasche, Stefan; Kucharski, Adam J; Eggo, Rosalind M; Funk, Sebastian

Short-term forecasts to inform the response to the Covid-19 epidemic in the UK. (2020) Funk, S; Abbott, S; Atkins, BD; Baguelin, M; Baillie, JK; Birrell, P; Blake, J; Bosse, NI; Burton, J; Carruthers, J; Davies, NG; De Angelis, D; Dyson, L; Edmunds, WJ; Eggo, RM; Ferguson, NM; Gaythorpe, K; Gorsich, E; Guyver-Fletcher, G; Hellewell, J; Hill, EM; Holmes, A; House, TA; Jewell, C; Jit, M; Jombart, T; Joshi, I; Keeling, MJ; Kendall, E; Knock, ES; Kucharski, AJ; Lythgoe, KA; Meakin, SR; Munday, JD; Openshaw, PJM; Overton, CE; Pagani, F; Pearson, J; Perez-Guzman, PN; Pellis, L; Scarabel, F; Semple, MG; Sherratt, K; Tang, M; Tildesley, MJ; Van Leeuwen, E; Whittles, LK

The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia. (2020) Pavelka, Martin; Van-Zandvoort, Kevin; Abbott, Sam; Sherratt, Katharine; Majdan, Marek; Analýz, Inštitút Zdravotných; Jarčuška, Pavol; Krajčí, Marek; Flasche, Stefan; Funk, Sebastian