Derrick, Jade; Hollinghurst, Philippa; O'Brien, Sarah; Elviss, Nicola; Allen, David J; Iturriza-Gómara, Miren; (2021) Measuring transfer of human norovirus during sandwich production: Simulating the role of food, food handlers and the environment. International journal of food microbiology, 348. 109151-. ISSN 0168-1605 DOI: https://doi.org/10.1016/j.ijfoodmicro.2021.109151

Douglas, A; Sandmann, FG; Allen, DJ; Celma, CC; Beard, S; Larkin, L; (2021) Impact of COVID-19 on national surveillance of norovirus in England and potential risk of increased disease activity in 2021. J Hosp Infect, 112. pp. 124-126. ISSN 0195-6701 DOI: https://doi.org/10.1016/j.jhin.2021.03.006

Kelly, Daniel; Jere, Khuzwayo C; Darby, Alistair C; Allen, David J; Iturriza-Gómara, Miren; (2021) Complete genome characterization of human noroviruses allows comparison of minor alleles during acute and chronic infections. Access microbiology, 3 (3). 000203. DOI: https://doi.org/10.1099/acmi.0.000203

O'Reilly, Kathleen M; Sandman, Frank; Allen, David; Jarvis, Christopher I; Gimma, Amy; Douglas, Amy; Larkin, Lesley; Wong, Kerry LM; Baguelin, Marc; Baric, Ralph S; +4 more... Lindesmith, Lisa C; Goldstein, Richard A; Breuer, Judith; Edmunds, W John; (2021) Predicted norovirus resurgence in 2021-2022 due to the relaxation of nonpharmaceutical interventions associated with COVID-19 restrictions in England: a mathematical modeling study. BMC medicine, 19 (1). p. 299. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-021-02153-8

Wampande, Eddie M; Waiswa, Peter; Allen, David J; Hewson, Roger; Frost, Simon DW; Stubbs, Samuel CB; (2021) Phylogenetic Characterization of Crimean-Congo Hemorrhagic Fever Virus Detected in African Blue Ticks Feeding on Cattle in a Ugandan Abattoir. Microorganisms, 9 (2). p. 438. ISSN 2076-2607 DOI: https://doi.org/10.3390/microorganisms9020438

O'Reilly, KM; Grassly, NC; Allen, DJ; Bannister-Tyrrell, M; Cameron, A; Carrion Martin, AI; Ramsay, M; Pebody, R; Zambon, M; (2020) Surveillance optimisation to detect poliovirus in the pre-eradication era: a modelling study of England and Wales. Epidemiology and Infection, 148. e157-. ISSN 0950-2688 DOI: https://doi.org/10.1017/S0950268820001004

O'Reilly, Kathleen M; Allen, David J; Fine, Paul; Asghar, Humayun; (2020) The challenges of informative wastewater sampling for SARS-CoV-2 must be met: lessons from polio eradication. The Lancet. Microbe, 1 (5). e189-e190. ISSN 2666-5247 DOI: https://doi.org/10.1016/S2666-5247(20)30100-2

Gower, Charlotte Mary; Dunning, Jake; Nawaz, Sameena; Allen, David; Ramsay, Mary Elizabeth; Ladhani, Shamez; (2019) Vaccine-derived rotavirus strains in infants in England. Archives of Disease in Childhood, 105 (6). pp. 553-557. ISSN 0003-9888 DOI: https://doi.org/10.1136/archdischild-2019-317428

Harris, John P; Iturriza-Gomara, Miren; Allen, David J; Kelly, Susan; O'Brien, Sarah J; (2019) Norovirus strain types found within the second infectious intestinal diseases (IID2) study an analysis of norovirus circulating in the community. BMC infectious diseases, 19 (1). 87-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-019-3706-z

Hungerford, Daniel; Allen, David J; Nawaz, Sameena; Collins, Sarah; Ladhani, Shamez; Vivancos, Roberto; Iturriza-Gómara, Miren; (2019) Impact of rotavirus vaccination on rotavirus genotype distribution and diversity in England, September 2006 to August 2016. Eurosurveillance, 24 (6). pp. 38-48. ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2019.24.6.1700774

Morgan, Mari; Watts, Vicky; Allen, David; Curtis, Daniele; Kirolos, Amir; Macdonald, Neil; Maslen, Ellie; Morgan, Deb; Saei, Ayoub; Sedgwick, James; +6 more... Stevenson, Janet; Turbitt, Deborah; Vivancos, Roberto; Waugh, Catriona; Williams, Chris; Decraene, Valerie; (2019) Challenges of investigating a large food-borne norovirus outbreak across all branches of a restaurant group in the United Kingdom, October 2016. Eurosurveillance, 24 (18). ISSN 1560-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2019.24.18.1800511

Praharaj, Ira; Parker, Edward PK; Giri, Sidhartha; Allen, David J; Silas, Sophia; Revathi, R; Kaliappan, Saravanakumar Puthupalayam; John, Jacob; Prasad, Jasmine Helan; Kampmann, Beate; +3 more... Iturriza-Gómara, Miren; Grassly, Nicholas C; Kang, Gagandeep; (2019) Influence of Nonpolio Enteroviruses and the Bacterial Gut Microbiota on Oral Poliovirus Vaccine Response: A Study from South India. The Journal of infectious diseases, 219 (8). pp. 1178-1186. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiy568

Smith, Catherine M; Allen, David J; Nawaz, Sameena; Kozlakidis, Zisis; Nastouli, Eleni; Hayward, Andrew; Ward, Katherine N; (2019) An interactive data visualisation application to investigate nosocomial transmission of infections. Wellcome Open Research, 4. 100-. DOI: https://doi.org/10.12688/wellcomeopenres.15240.2

Smith, Catherine M; Allen, David J; Nawaz, Sameena; Kozlakidis, Zisis; Nastouli, Eleni; Hayward, Andrew; Ward, Katherine N; (2019) An interactive data visualisation application to investigate nosocomial transmission of infections. Wellcome Open Research, 4. p. 100. DOI: https://doi.org/10.12688/wellcomeopenres.15240.2

Walker, Jemma L; Andrews, Nick J; Atchison, Christina J; Collins, Sarah; Allen, David J; Ramsay, Mary E; Ladhani, Shamez N; Thomas, Sara L; (2019) Effectiveness of oral rotavirus vaccination in England against rotavirus-confirmed and all-cause acute gastroenteritis. Vaccine: X, 1. 100005-. ISSN 2590-1362 DOI: https://doi.org/10.1016/j.jvacx.2019.100005

Black, Sally; Bradley, Carina; Lai, Florence Y; Shenoy, Savitha; Bandi, Srini; Allen, David J; Tang, Julian W; (2018) Comparing the Clinical Severity of Disease Caused by Enteroviruses and Human Parechoviruses in Neonates and Infants. The Pediatric infectious disease journal, 38 (2). e36-e38. ISSN 0891-3668 DOI: https://doi.org/10.1097/INF.0000000000002145

Ferreras Antolín, Laura; Kadambari, Seilesh; Braccio, Serena; Tang, Julian Wei-Tze; Xerry, Jacqueline; Allen, David James; Ladhani, Shamez N; Parechovirus Surveillance Network; (2018) Increased detection of human parechovirus infection in infants in England during 2016: epidemiology and clinical characteristics. Archives of disease in childhood, 103 (11). pp. 1061-1066. ISSN 0003-9888 DOI: https://doi.org/10.1136/archdischild-2017-314281 Full text not available from this repository.

Harvala, Heli; Broberg, Eeva; Benschop, Kimberley; Berginc, Natasa; Ladhani, Shamez; Susi, Petri; Christiansen, Claus; McKenna, James; Allen, David; Makiello, Phoebe; +56 more... McAllister, Georgina; Carmen, Mirabelli; Zakikhany, Katherina; Dyrdak, Robert; Nielsen, Xiaohui; Madsen, Tina; Paul, Joel; Moore, Catherine; von Eije, Karin; Piralla, Antonio; Carlier, Mieke; Vanoverschelde, Laura; Poelman, Randy; Anton, Andrés; López-Labrador, F Xavier; Pellegrinelli, Laura; Keeren, Kathrin; Maier, Melanie; Cassidy, Hayley; Derdas, Stavros; Savolainen-Kopra, Carita; Diedrich, Sabine; Nordbø, Svein; Buesa, Javier; Bailly, Jean-Luc; Baldanti, Fausto; MacAdam, Andrew; Mirand, Audrey; Dudman, Susanne; Schuffenecker, Isabelle; Kadambari, Seilesh; Neyts, Johan; Griffiths, Michael J; Richter, Jan; Margaretto, Cristina; Govind, Sheila; Morley, Ursula; Adams, Ortwin; Krokstad, Sidsel; Dean, Jonathan; Pons-Salort, Margarita; Prochazka, Birgit; Cabrerizo, Maria; Majumdar, Manasi; Nebbia, Gaia; Wiewel, Maryse; Cottrell, Simon; Coyle, Peter; Martin, Javier; Moore, Catrin; Midgley, Sofie; Horby, Peter; Wolthers, Katja; Simmonds, Peter; Niesters, Hubert; Fischer, Thea K; (2018) Recommendations for enterovirus diagnostics and characterisation within and beyond Europe. Journal of clinical virology, 101. pp. 11-17. ISSN 1386-6532 DOI: https://doi.org/10.1016/j.jcv.2018.01.008

Kadambari, Seilesh; Braccio, Serena; Ribeiro, Sonia; Allen, David J; Pebody, Richard; Brown, David; Cunney, Robert; Sharland, Mike; Ladhani, Shamez; (2018) Enterovirus and parechovirus meningitis in infants younger than 90 days old in the UK and Republic of Ireland: a British Paediatric Surveillance Unit study. Archives of Disease in Childhood, 104 (6). pp. 552-557. ISSN 0003-9888 DOI: https://doi.org/10.1136/archdischild-2018-315643

Majumdar, Manasi; Klapsa, Dimitra; Wilton, Thomas; Akello, Joyce; Anscombe, Catherine; Allen, David; Mee, Edward T; Minor, Philip D; Martin, Javier; (2018) Isolation of Vaccine-Like Poliovirus Strains in Sewage Samples From the United Kingdom. The Journal of Infectious Diseases, 217 (8). pp. 1222-1230. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jix667

Sandmann, Frank G; Shallcross, Laura; Adams, Natalie; Allen, David J; Coen, Pietro G; Jeanes, Annette; Kozlakidis, Zisis; Larkin, Lesley; Wurie, Fatima; Robotham, Julie V; +2 more... Jit, Mark; Deeny, Sarah R; (2018) Estimating the Hospital Burden of Norovirus-Associated Gastroenteritis in England and Its Opportunity Costs for Nonadmitted Patients. Clinical infectious diseases, 67 (5). pp. 693-700. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy167

Teo, KW; Lai, FY; Bandi, S; Allen, DJ; Tang, JW; (2018) Emergence of Coxsackie A6 hand-foot-and-mouth disease and comparative severity of Coxsackie B vs. echovirus infections, 2014-2016, UK. Elsevier. DOI: https://doi.org/10.1016/j.jinf.2018.08.007 Full text not available from this repository.

van Beek, Janko; de Graaf, Miranda; Al-Hello, Haider; Allen, David J; Ambert-Balay, Katia; Botteldoorn, Nadine; Brytting, Mia; Buesa, Javier; Cabrerizo, Maria; Chan, Martin; +23 more... Cloak, Fiona; Di Bartolo, Ilaria; Guix, Susana; Hewitt, Joanne; Iritani, Nobuhiro; Jin, Miao; Johne, Reimar; Lederer, Ingeborg; Mans, Janet; Martella, Vito; Maunula, Leena; McAllister, Georgina; Niendorf, Sandra; Niesters, Hubert G; Podkolzin, Alexander T; Poljsak-Prijatelj, Mateja; Rasmussen, Lasse Dam; Reuter, Gábor; Tuite, Gráinne; Kroneman, Annelies; Vennema, Harry; Koopmans, Marion PG; NoroNet; (2018) Molecular surveillance of norovirus, 2005-16: an epidemiological analysis of data collected from the NoroNet network. The Lancet infectious diseases, 18 (5). pp. 545-553. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(18)30059-8

Allen, David J; Harris, John P; (2017) Methods for ascertaining norovirus disease burdens. Human vaccines & immunotherapeutics, 13 (11). pp. 2630-2636. ISSN 2164-5515 DOI: https://doi.org/10.1080/21645515.2017.1360455

Allen, David J; Harris, John P; (2017) Methods for ascertaining norovirus disease burdens. HUMAN VACCINES & IMMUNOTHERAPEUTICS, 13 (11). pp. 2630-2636. ISSN 2164-5515 DOI: https://doi.org/10.1080/21645515.2017.1360455

Carrion Martin, AI; Pebody, RG; Danis, K; Ellis, J; Niazi, S; DE Lusignan, S; Brown, KE; Zambon, M; Allen, DJ; (2017) The emergence of enterovirus D68 in England in autumn 2014 and the necessity for reinforcing enterovirus respiratory screening. Epidemiology and infection. pp. 1-10. ISSN 0950-2688 DOI: https://doi.org/10.1017/S0950268817000590

Holmes, CW; Rahman, S; Allen, DJ; Bandi, S; Tang, JW; (2017) Human parechovirus cluster in the UK, 8 May-2 August 2016-sequence analysis. Journal of clinical virology, 93. pp. 37-39. ISSN 1386-6532 DOI: https://doi.org/10.1016/j.jcv.2017.05.018

Inns, Thomas; Pulawska-Czub, Anna; Harris, John P; Vivancos, Roberto; Read, Jonathan M; Beeching, Nicholas J; Allen, David J; Iturriza-Gomara, Miren; O'Brien, Sarah J; (2017) Prospective cohort study to investigate the burden and transmission of acute gastroenteritis in care homes: a study protocol. BMJ open, 7 (11). e018867-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2017-018867

Ruis, Christopher; Roy, Sunando; Brown, Julianne R; Allen, David J; Goldstein, Richard A; Breuer, Judith; (2017) The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission. PloS one, 12 (6). e0179572-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0179572

Smith, KC; Inns, T; Decraene, V; Fox, A; Allen, DJ; Shah, A; (2017) An outbreak of norovirus GI-6 infection following a wedding in North West England. Epidemiology and infection, 145 (6). pp. 1239-1245. ISSN 0950-2688 DOI: https://doi.org/10.1017/S0950268816003368

Allen, David J; Trainor, Eamonn; Callaghan, Anna; O'Brien, Sarah J; Cunliffe, Nigel A; Iturriza-Gómara, Miren; (2016) Early Detection of Epidemic GII-4 Norovirus Strains in UK and Malawi: Role of Surveillance of Sporadic Acute Gastroenteritis in Anticipating Global Epidemics. PloS one, 11 (4). e0146972-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0146972

Carmona-Vicente, Noelia; Allen, David J; Rodríguez-Díaz, Jesús; Iturriza-Gómara, Miren; Buesa, Javier; (2016) Antibodies against Lewis antigens inhibit the binding of human norovirus GII.4 virus-like particles to saliva but not to intestinal Caco-2 cells. Virology journal, 13 (1). 82-. ISSN 1743-422X DOI: https://doi.org/10.1186/s12985-016-0538-y

Carmona-Vicente, Noelia; Vila-Vicent, Susana; Allen, David; Gozalbo-Rovira, Roberto; Iturriza-Gómara, Miren; Buesa, Javier; Rodríguez-Díaz, Jesús; (2016) Characterization of a Novel Conformational GII.4 Norovirus Epitope: Implications for Norovirus-Host Interactions. Journal of virology, 90 (17). pp. 7703-7714. ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.01023-16 Full text not available from this repository.

Holmes, Christopher W; Koo, Sharon SF; Osman, Husam; Wilson, Steven; Xerry, Jacqueline; Gallimore, Chris I; Allen, David J; Tang, Julian W; (2016) Predominance of enterovirus B and echovirus 30 as cause of viral meningitis in a UK population. Journal of clinical virology, 81. pp. 90-93. ISSN 1386-6532 DOI: https://doi.org/10.1016/j.jcv.2016.06.007

Atchison, Christina J; Stowe, Julia; Andrews, Nick; Collins, Sarah; Allen, David J; Nawaz, Sameena; Brown, David; Ramsay, Mary E; Ladhani, Shamez N; (2015) Rapid Declines in Age Group-Specific Rotavirus Infection and Acute Gastroenteritis Among Vaccinated and Unvaccinated Individuals Within 1 Year of Rotavirus Vaccine Introduction in England and Wales. The Journal of infectious diseases, 213 (2). pp. 243-249. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiv398 Full text not available from this repository.

Hungerford, D; Read, JM; Cooke, RP; Vivancos, R; Iturriza-Gómara, M; Allen, DJ; French, N; Cunliffe, N; (2015) Early impact of rotavirus vaccination in a large paediatric hospital in the UK. Technical Report. Elsevier. DOI: https://doi.org/10.1016/j.jhin.2015.12.010

Allen, David J; Adams, Natalie L; Aladin, Farah; Harris, John P; Brown, David WG; (2014) Emergence of the GII-4 Norovirus Sydney2012 strain in England, winter 2012-2013. PloS one, 9 (2). e88978-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0088978

Harris, JP; Adams, NL; Lopman, BA; Allen, DJ; Adak, GK; (2013) The development of Web-based surveillance provides new insights into the burden of norovirus outbreaks in hospitals in England. Epidemiology and infection, 142 (8). pp. 1590-1598. ISSN 0950-2688 DOI: https://doi.org/10.1017/S0950268813002896 Full text not available from this repository.

Nawaz, Sameena; Allen, David J; Aladin, Farah; Gallimore, Christopher; Iturriza-Gómara, Miren; (2012) Human bocaviruses are not significantly associated with gastroenteritis: results of retesting archive DNA from a case control study in the UK. PloS one, 7 (7). e41346-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0041346

Wight, Darren J; Boucherit, Virginie C; Nader, Mirella; Allen, David J; Taylor, Ian A; Bishop, Kate N; (2012) The gammaretroviral p12 protein has multiple domains that function during the early stages of replication. Retrovirology, 9 (1). 83-. ISSN 1742-4690 DOI: https://doi.org/10.1186/1742-4690-9-83

Zakikhany, Katherina; Allen, David J; Brown, David; Iturriza-Gómara, Miren; (2012) Molecular evolution of GII-4 Norovirus strains. PloS one, 7 (7). e41625-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0041625

Morter, S; Bennet, G; Fish, J; Richards, J; Allen, DJ; Nawaz, S; Iturriza-Gómara, M; Brolly, S; Gray, J; (2010) Norovirus in the hospital setting: virus introduction and spread within the hospital environment. The Journal of hospital infection, 77 (2). pp. 106-112. ISSN 0195-6701 DOI: https://doi.org/10.1016/j.jhin.2010.09.035 Full text not available from this repository.

Allen, David J; Noad, Rob; Samuel, Dhan; Gray, Jim J; Roy, Polly; Iturriza-Gómara, Miren; (2009) Characterisation of a GII-4 norovirus variant-specific surface-exposed site involved in antibody binding. Virology journal, 6 (1). 150-. ISSN 1743-422X DOI: https://doi.org/10.1186/1743-422X-6-150

Allen, David J; Gray, Jim J; Gallimore, Chris I; Xerry, Jacqueline; Iturriza-Gómara, Miren; (2008) Analysis of amino acid variation in the P2 domain of the GII-4 norovirus VP1 protein reveals putative variant-specific epitopes. PloS one, 3 (1). e1485-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0001485

Xerry, Jacqueline; Gallimore, Chris I; Iturriza-Gómara, Miren; Allen, David J; Gray, Jim J; (2008) Transmission events within outbreaks of gastroenteritis determined through analysis of nucleotide sequences of the P2 domain of genogroup II noroviruses. Journal of clinical microbiology, 46 (3). pp. 947-953. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.02240-07 Full text not available from this repository.