Items where Author is "Allen, David J"
Number of items: 53.
2023
A high-resolution melt curve toolkit to identify lineage-defining SARS-CoV-2 mutations. (2023)
Fraser, Alice J; Greenland-Bews, Caitlin; Kelly, Daniel; Williams, Christopher T; LSTM Diagnostics Group; CONDOR Steering Group; Body, Richard; Adams, Emily R; Atienzar, Ana Cubas; Edwards, Thomas; Allen, David J
Emergent variant modeling of the serological repertoire to norovirus in young children. (2023)
Lindesmith, Lisa C; Brewer-Jensen, Paul D; Conrad, Helen; O'Reilly, Kathleen M; Mallory, Michael L; Kelly, Daniel; Williams, Rachel; Edmunds, W John; Allen, David J; Breuer, Judith; Baric, Ralph S
Altered Faecal Microbiota Composition and Structure of Ghanaian Children with Acute Gastroenteritis. (2023)
Quaye, Emmanuel Kofi; Adjei, Raymond Lovelace; Isawumi, Abiola; Allen, David J; Caporaso, J Gregory; Quaye, Osbourne
2022
Norovirus attribution study: Detection of norovirus from the commercial food preparation environment in outbreak and non-outbreak premises. (2022)
Elviss, Nicola C; Allen, David J; Kelly, Daniel; Akello, Joyce Odeke; Hau, Sarah; Fox, Andrew J; Hopkins, Mark; Derrick, Jade; O'Brien, Sarah; Iturriza-Gomara, Miren; Conducted as part of NoVAS
Using trained dogs and organic semi-conducting sensors to identify asymptomatic and mild SARS-CoV-2 infections: an observational study. (2022)
Guest, Claire; Dewhirst, Sarah Y; Lindsay, Steve W; Allen, David J; Aziz, Sophie; Baerenbold, Oliver; Bradley, John; Chabildas, Unnati; Chen-Hussey, Vanessa; Clifford, Samuel; Cottis, Luke; Dennehy, Jessica; Foley, Erin; Gezan, Salvador A; Gibson, Tim; Greaves, Courtenay K; Kleinschmidt, Immo; Lambert, Sébastien; Last, Anna; Morant, Steve; Parker, Josephine EA; Pickett, John; Quilty, Billy J; Rooney, Ann; Shah, Manil; Somerville, Mark; Squires, Chelci; Walker, Martin; Logan, James G; COVID Dogs Research Team
A Comparison of Two Methods for Detection of Norovirus RNA in Environmental Swab Samples. (2022)
Kelly, Daniel; Allen, David J; Akello, Joyce O; Hau, Sarah; Iturriza-Gómara, Miren
Immune Imprinting Drives Human Norovirus Potential for Global Spread. (2022)
Lindesmith, Lisa C; Boshier, Florencia AT; Brewer-Jensen, Paul D; Roy, Sunando; Costantini, Veronica; Mallory, Michael L; Zweigart, Mark; May, Samantha R; Conrad, Helen; O'Reilly, Kathleen M; Kelly, Daniel; Celma, Cristina C; Beard, Stuart; Williams, Rachel; Tutill, Helena J; Becker Dreps, Sylvia; Bucardo, Filemón; Allen, David J; Vinjé, Jan; Goldstein, Richard A; Breuer, Judith; Baric, Ralph S
Antigenic Site Immunodominance Redirection Following Repeat Variant Exposure. (2022)
Lindesmith, Lisa C; Brewer-Jensen, Paul D; Mallory, Michael L; Zweigart, Mark R; May, Samantha R; Kelly, Daniel; Williams, Rachel; Becker-Dreps, Sylvia; Bucardo, Filemón; Allen, David J; Breuer, Judith; Baric, Ralph S
2021
Measuring transfer of human norovirus during sandwich production: Simulating the role of food, food handlers and the environment. (2021)
Derrick, Jade; Hollinghurst, Philippa; O'Brien, Sarah; Elviss, Nicola; Allen, David J; Iturriza-Gómara, Miren
Impact of COVID-19 on national surveillance of norovirus in England and potential risk of increased disease activity in 2021. (2021)
Douglas, A; Sandmann, FG; Allen, DJ; Celma, CC; Beard, S; Larkin, L
Complete genome characterization of human noroviruses allows comparison of minor alleles during acute and chronic infections. (2021)
Kelly, Daniel; Jere, Khuzwayo C; Darby, Alistair C; Allen, David J; Iturriza-Gómara, Miren
Predicted norovirus resurgence in 2021-2022 due to the relaxation of nonpharmaceutical interventions associated with COVID-19 restrictions in England: a mathematical modeling study. (2021)
O'Reilly, Kathleen M; Sandman, Frank; Allen, David; Jarvis, Christopher I; Gimma, Amy; Douglas, Amy; Larkin, Lesley; Wong, Kerry LM; Baguelin, Marc; Baric, Ralph S; Lindesmith, Lisa C; Goldstein, Richard A; Breuer, Judith; Edmunds, W John
Phylogenetic Characterization of Crimean-Congo Hemorrhagic Fever Virus Detected in African Blue Ticks Feeding on Cattle in a Ugandan Abattoir. (2021)
Wampande, Eddie M; Waiswa, Peter; Allen, David J; Hewson, Roger; Frost, Simon DW; Stubbs, Samuel CB
2020
Surveillance optimisation to detect poliovirus in the pre-eradication era: a modelling study of England and Wales. (2020)
O'Reilly, KM; Grassly, NC; Allen, DJ; Bannister-Tyrrell, M; Cameron, A; Carrion Martin, AI; Ramsay, M; Pebody, R; Zambon, M
The challenges of informative wastewater sampling for SARS-CoV-2 must be met: lessons from polio eradication. (2020)
O'Reilly, Kathleen M; Allen, David J; Fine, Paul; Asghar, Humayun
2019
Vaccine-derived rotavirus strains in infants in England. (2019)
Gower, Charlotte Mary; Dunning, Jake; Nawaz, Sameena; Allen, David; Ramsay, Mary Elizabeth; Ladhani, Shamez
Norovirus strain types found within the second infectious intestinal diseases (IID2) study an analysis of norovirus circulating in the community. (2019)
Harris, John P; Iturriza-Gomara, Miren; Allen, David J; Kelly, Susan; O'Brien, Sarah J
Impact of rotavirus vaccination on rotavirus genotype distribution and diversity in England, September 2006 to August 2016. (2019)
Hungerford, Daniel; Allen, David J; Nawaz, Sameena; Collins, Sarah; Ladhani, Shamez; Vivancos, Roberto; Iturriza-Gómara, Miren
Challenges of investigating a large food-borne norovirus outbreak across all branches of a restaurant group in the United Kingdom, October 2016. (2019)
Morgan, Mari; Watts, Vicky; Allen, David; Curtis, Daniele; Kirolos, Amir; Macdonald, Neil; Maslen, Ellie; Morgan, Deb; Saei, Ayoub; Sedgwick, James; Stevenson, Janet; Turbitt, Deborah; Vivancos, Roberto; Waugh, Catriona; Williams, Chris; Decraene, Valerie
Influence of Nonpolio Enteroviruses and the Bacterial Gut Microbiota on Oral Poliovirus Vaccine Response: A Study from South India. (2018)
Praharaj, Ira; Parker, Edward PK; Giri, Sidhartha; Allen, David J; Silas, Sophia; Revathi, R; Kaliappan, Saravanakumar Puthupalayam; John, Jacob; Prasad, Jasmine Helan; Kampmann, Beate; Iturriza-Gómara, Miren; Grassly, Nicholas C; Kang, Gagandeep
An interactive data visualisation application to investigate nosocomial transmission of infections. (2019)
Smith, Catherine M; Allen, David J; Nawaz, Sameena; Kozlakidis, Zisis; Nastouli, Eleni; Hayward, Andrew; Ward, Katherine N
An interactive data visualisation application to investigate nosocomial transmission of infections. (2019)
Smith, Catherine M; Allen, David J; Nawaz, Sameena; Kozlakidis, Zisis; Nastouli, Eleni; Hayward, Andrew; Ward, Katherine N
Effectiveness of oral rotavirus vaccination in England against rotavirus-confirmed and all-cause acute gastroenteritis. (2019)
Walker, Jemma L; Andrews, Nick J; Atchison, Christina J; Collins, Sarah; Allen, David J; Ramsay, Mary E; Ladhani, Shamez N; Thomas, Sara L
2018
Methods for ascertaining norovirus disease burdens. (2018)
Allen, David J; Harris, John P
Comparing the Clinical Severity of Disease Caused by Enteroviruses and Human Parechoviruses in Neonates and Infants. (2018)
Black, Sally; Bradley, Carina; Lai, Florence Y; Shenoy, Savitha; Bandi, Srini; Allen, David J; Tang, Julian W
Increased detection of human parechovirus infection in infants in England during 2016: epidemiology and clinical characteristics. (2018)
Ferreras Antolín, Laura; Kadambari, Seilesh; Braccio, Serena; Tang, Julian Wei-Tze; Xerry, Jacqueline; Allen, David James; Ladhani, Shamez N; Parechovirus Surveillance Network
Recommendations for enterovirus diagnostics and characterisation within and beyond Europe. (2018)
Harvala, Heli; Broberg, Eeva; Benschop, Kimberley; Berginc, Natasa; Ladhani, Shamez; Susi, Petri; Christiansen, Claus; McKenna, James; Allen, David; Makiello, Phoebe; McAllister, Georgina; Carmen, Mirabelli; Zakikhany, Katherina; Dyrdak, Robert; Nielsen, Xiaohui; Madsen, Tina; Paul, Joel; Moore, Catherine; von Eije, Karin; Piralla, Antonio; Carlier, Mieke; Vanoverschelde, Laura; Poelman, Randy; Anton, Andrés; López-Labrador, F Xavier; Pellegrinelli, Laura; Keeren, Kathrin; Maier, Melanie; Cassidy, Hayley; Derdas, Stavros; Savolainen-Kopra, Carita; Diedrich, Sabine; Nordbø, Svein; Buesa, Javier; Bailly, Jean-Luc; Baldanti, Fausto; MacAdam, Andrew; Mirand, Audrey; Dudman, Susanne; Schuffenecker, Isabelle; Kadambari, Seilesh; Neyts, Johan; Griffiths, Michael J; Richter, Jan; Margaretto, Cristina; Govind, Sheila; Morley, Ursula; Adams, Ortwin; Krokstad, Sidsel; Dean, Jonathan; Pons-Salort, Margarita; Prochazka, Birgit; Cabrerizo, Maria; Majumdar, Manasi; Nebbia, Gaia; Wiewel, Maryse; Cottrell, Simon; Coyle, Peter; Martin, Javier; Moore, Catrin; Midgley, Sofie; Horby, Peter; Wolthers, Katja; Simmonds, Peter; Niesters, Hubert; Fischer, Thea K
Enterovirus and parechovirus meningitis in infants younger than 90 days old in the UK and Republic of Ireland: a British Paediatric Surveillance Unit study. (2018)
Kadambari, Seilesh; Braccio, Serena; Ribeiro, Sonia; Allen, David J; Pebody, Richard; Brown, David; Cunney, Robert; Sharland, Mike; Ladhani, Shamez
Isolation of Vaccine-Like Poliovirus Strains in Sewage Samples From the United Kingdom. (2018)
Majumdar, Manasi; Klapsa, Dimitra; Wilton, Thomas; Akello, Joyce; Anscombe, Catherine; Allen, David; Mee, Edward T; Minor, Philip D; Martin, Javier
Estimating the Hospital Burden of Norovirus-Associated Gastroenteritis in England and Its Opportunity Costs for Nonadmitted Patients. (2018)
Sandmann, Frank G; Shallcross, Laura; Adams, Natalie; Allen, David J; Coen, Pietro G; Jeanes, Annette; Kozlakidis, Zisis; Larkin, Lesley; Wurie, Fatima; Robotham, Julie V; Jit, Mark; Deeny, Sarah R
Emergence of Coxsackie A6 hand-foot-and-mouth disease and comparative severity of Coxsackie B vs. echovirus infections, 2014-2016, UK. (2018)
Teo, KW; Lai, FY; Bandi, S; Allen, DJ; Tang, JW
Molecular surveillance of norovirus, 2005-16: an epidemiological analysis of data collected from the NoroNet network. (2017)
van Beek, Janko; de Graaf, Miranda; Al-Hello, Haider; Allen, David J; Ambert-Balay, Katia; Botteldoorn, Nadine; Brytting, Mia; Buesa, Javier; Cabrerizo, Maria; Chan, Martin; Cloak, Fiona; Di Bartolo, Ilaria; Guix, Susana; Hewitt, Joanne; Iritani, Nobuhiro; Jin, Miao; Johne, Reimar; Lederer, Ingeborg; Mans, Janet; Martella, Vito; Maunula, Leena; McAllister, Georgina; Niendorf, Sandra; Niesters, Hubert G; Podkolzin, Alexander T; Poljsak-Prijatelj, Mateja; Rasmussen, Lasse Dam; Reuter, Gábor; Tuite, Gráinne; Kroneman, Annelies; Vennema, Harry; Koopmans, Marion PG; NoroNet
2017
Methods for ascertaining norovirus disease burdens. (2017)
Allen, David J; Harris, John P
The emergence of enterovirus D68 in England in autumn 2014 and the necessity for reinforcing enterovirus respiratory screening. (2017)
Carrion Martin, AI; Pebody, RG; Danis, K; Ellis, J; Niazi, S; DE Lusignan, S; Brown, KE; Zambon, M; Allen, DJ
Human parechovirus cluster in the UK, 8 May-2 August 2016-sequence analysis. (2017)
Holmes, CW; Rahman, S; Allen, DJ; Bandi, S; Tang, JW
Prospective cohort study to investigate the burden and transmission of acute gastroenteritis in care homes: a study protocol. (2017)
Inns, Thomas; Pulawska-Czub, Anna; Harris, John P; Vivancos, Roberto; Read, Jonathan M; Beeching, Nicholas J; Allen, David J; Iturriza-Gomara, Miren; O'Brien, Sarah J
The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission. (2017)
Ruis, Christopher; Roy, Sunando; Brown, Julianne R; Allen, David J; Goldstein, Richard A; Breuer, Judith
An outbreak of norovirus GI-6 infection following a wedding in North West England. (2017)
Smith, KC; Inns, T; Decraene, V; Fox, A; Allen, DJ; Shah, A
2016
Early Detection of Epidemic GII-4 Norovirus Strains in UK and Malawi: Role of Surveillance of Sporadic Acute Gastroenteritis in Anticipating Global Epidemics. (2016)
Allen, David J; Trainor, Eamonn; Callaghan, Anna; O'Brien, Sarah J; Cunliffe, Nigel A; Iturriza-Gómara, Miren
Antibodies against Lewis antigens inhibit the binding of human norovirus GII.4 virus-like particles to saliva but not to intestinal Caco-2 cells. (2016)
Carmona-Vicente, Noelia; Allen, David J; Rodríguez-Díaz, Jesús; Iturriza-Gómara, Miren; Buesa, Javier
Characterization of a Novel Conformational GII.4 Norovirus Epitope: Implications for Norovirus-Host Interactions. (2016)
Carmona-Vicente, Noelia; Vila-Vicent, Susana; Allen, David; Gozalbo-Rovira, Roberto; Iturriza-Gómara, Miren; Buesa, Javier; Rodríguez-Díaz, Jesús
Predominance of enterovirus B and echovirus 30 as cause of viral meningitis in a UK population. (2016)
Holmes, Christopher W; Koo, Sharon SF; Osman, Husam; Wilson, Steven; Xerry, Jacqueline; Gallimore, Chris I; Allen, David J; Tang, Julian W
2015
Rapid Declines in Age Group-Specific Rotavirus Infection and Acute Gastroenteritis Among Vaccinated and Unvaccinated Individuals Within 1 Year of Rotavirus Vaccine Introduction in England and Wales. (2015)
Atchison, Christina J; Stowe, Julia; Andrews, Nick; Collins, Sarah; Allen, David J; Nawaz, Sameena; Brown, David; Ramsay, Mary E; Ladhani, Shamez N
Early impact of rotavirus vaccination in a large paediatric hospital in the UK. (2015)
Hungerford, D; Read, JM; Cooke, RP; Vivancos, R; Iturriza-Gómara, M; Allen, DJ; French, N; Cunliffe, N
2012
Human bocaviruses are not significantly associated with gastroenteritis: results of retesting archive DNA from a case control study in the UK. (2012)
Nawaz, Sameena; Allen, David J; Aladin, Farah; Gallimore, Christopher; Iturriza-Gómara, Miren
The gammaretroviral p12 protein has multiple domains that function during the early stages of replication. (2012)
Wight, Darren J; Boucherit, Virginie C; Nader, Mirella; Allen, David J; Taylor, Ian A; Bishop, Kate N
Molecular evolution of GII-4 Norovirus strains. (2012)
Zakikhany, Katherina; Allen, David J; Brown, David; Iturriza-Gómara, Miren
2008
Analysis of amino acid variation in the P2 domain of the GII-4 norovirus VP1 protein reveals putative variant-specific epitopes. (2008)
Allen, David J; Gray, Jim J; Gallimore, Chris I; Xerry, Jacqueline; Iturriza-Gómara, Miren
Transmission events within outbreaks of gastroenteritis determined through analysis of nucleotide sequences of the P2 domain of genogroup II noroviruses. (2008)
Xerry, Jacqueline; Gallimore, Chris I; Iturriza-Gómara, Miren; Allen, David J; Gray, Jim J