Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J; (2021) Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. Wellcome Open Research, 5. 239-. DOI: https://doi.org/10.12688/wellcomeopenres.16344.3

Knight, Gwenan M; Glover, Rebecca E; McQuaid, C Finn; Olaru, Ioana D; Gallandat, Karin; Leclerc, Quentin J; Fuller, Naomi M; Willcocks, Sam J; Hasan, Rumina; van Kleef, Esther; +1 more... Chandler, Clare Ir; (2021) Antimicrobial resistance and COVID-19: Intersections and implications. eLife, 10. pp. 1-27. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.64139

Youssef, Dina Mohamed; Wieland, Barbara; Knight, Gwenan M; Lines, Jo; Naylor, Nichola R; (2021) The effectiveness of biosecurity interventions in reducing the transmission of bacteria from livestock to humans at the farm level: A systematic literature review. Zoonoses and public health. ISSN 1863-1959 DOI: https://doi.org/10.1111/zph.12807

Coll, Francesc; Raven, Kathy E; Knight, Gwenan M; Blane, Beth; Harrison, Ewan M; Leek, Danielle; Enoch, David A; Brown, Nicholas M; Parkhill, Julian; Peacock, Sharon J; (2020) Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis. The Lancet. Microbe, 1 (8). e328-e335. ISSN 2666-5247 DOI: https://doi.org/10.1016/S2666-5247(20)30149-X

Emery, Jon C; Russell, Timothy W; Liu, Yang; Hellewell, Joel; Pearson, Carl Ab; CMMID COVID-19 Working Group; Knight, Gwenan M; Eggo, Rosalind M; Kucharski, Adam J; Funk, Sebastian; +2 more... Flasche, Stefan; Houben, Rein Mgj; (2020) The contribution of asymptomatic SARS-CoV-2 infections to transmission on the Diamond Princess cruise ship. eLife, 9. e58699-. DOI: https://doi.org/10.7554/eLife.58699

Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J; (2020) Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. Wellcome open research, 5. 239-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.16344.1

Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J; (2020) Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. Wellcome Open Res, 5. 239-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.16344.2

Harris, Rebecca C; Sumner, Tom; Knight, Gwenan M; Zhang, Hui; White, Richard G; (2020) Potential impact of tuberculosis vaccines in China, South Africa, and India. Science Translational Medicine, 12 (564). eaax4607-eaax4607. ISSN 1946-6234 DOI: https://doi.org/10.1126/scitranslmed.aax4607

Leclerc, Quentin J; Fuller, Naomi M; Knight, Lisa E; CMMID COVID-19 Working Group; Funk, Sebastian; Knight, Gwenan M; (2020) What settings have been linked to SARS-CoV-2 transmission clusters? Wellcome Open Research, 5. 83-. DOI: https://doi.org/10.12688/wellcomeopenres.15889.2

Leclerc, Quentin J; Naylor, Nichola R; Aiken, Alexander M; Coll, Francesc; Knight, Gwenan M; (2020) Feasibility of informing syndrome-level empiric antibiotic recommendations using publicly available antibiotic resistance datasets. Wellcome Open Research, 4 (140). 140-. DOI: https://doi.org/10.12688/wellcomeopenres.15477.2

McQuaid, C Finn; Cohen, Ted; Dean, Anna S; Houben, Rein MGJ; Knight, Gwenan M; Zignol, Matteo; White, Richard G; (2020) Ongoing challenges to understanding multidrug- and rifampicin-resistant tuberculosis in children versus adults. European Respiratory Journal, 57 (2). p. 2002504. ISSN 0903-1936 DOI: https://doi.org/10.1183/13993003.02504-2020 Item availability may be restricted.

McQuaid, C Finn; Horton, Katherine C; Dean, Anna S; Knight, Gwenan M; White, Richard G; (2020) The risk of multidrug- or rifampicin-resistance in males versus females with tuberculosis. The European respiratory journal, 56 (3). p. 2000626. ISSN 0903-1936 DOI: https://doi.org/10.1183/13993003.00626-2020 Item availability may be restricted.

Naylor, Nichola R; Lines, Jo; Waage, Jeff; Wieland, Barbara; Knight, Gwenan M; (2020) Quantitatively evaluating the cross-sectoral and One Health impact of interventions: A scoping review and case study of antimicrobial resistance. One Health (Amsterdam, Netherlands), 11. p. 100194. ISSN 2352-7714 DOI: https://doi.org/10.1016/j.onehlt.2020.100194

Rees, Eleanor M; Nightingale, Emily S; Jafari, Yalda; Waterlow, Naomi R; Clifford, Samuel; B Pearson, Carl A; Group, Cmmid Working; Jombart, Thibaut; Procter, Simon R; Knight, Gwenan M; (2020) COVID-19 length of hospital stay: a systematic review and data synthesis. BMC MEDICINE, 18 (1). 270-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01726-3

Rees, Eleanor M; Nightingale, Emily S; Jafari, Yalda; Waterlow, Naomi; Clifford, Samuel; Pearson, Carl AB; Jombert, Thibaut; Procter, Simon R; Knight, Gwenan M; (2020) COVID-19 length of hospital stay: a systematic review and data synthesis. BMC medicine, 18 (270). ISSN 1741-7015 DOI: https://doi.org/10.1101/2020.04.30.20084780

Harris, Rebecca C; Sumner, Tom; Knight, Gwenan M; Evans, Tom; Cardenas, Vicky; Chen, Chen; White, Richard G; (2019) Age-targeted tuberculosis vaccination in China and implications for vaccine development: a modelling study. The Lancet Global Health, 7 (2). e209-e218. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(18)30452-2

Knight, Gwenan M; Davies, Nicholas G; Colijn, Caroline; Coll, Francesc; Donker, Tjibbe; Gifford, Danna R; Glover, Rebecca E; Jit, Mark; Klemm, Elizabeth; Lehtinen, Sonja; +9 more... Lindsay, Jodi A; Lipsitch, Marc; Llewelyn, Martin J; Mateus, Ana LP; Robotham, Julie V; Sharland, Mike; Stekel, Dov; Yakob, Laith; Atkins, Katherine E; (2019) Mathematical modelling for antibiotic resistance control policy: do we know enough? BMC infectious diseases, 19 (1). 1011-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-019-4630-y

Knight, Gwenan M; McQuaid, C Finn; Dodd, Peter J; Houben, Rein MGJ; (2019) Global burden of latent multidrug-resistant tuberculosis: trends and estimates based on mathematical modelling. Lancet Infectious Diseases, 19 (8). pp. 903-912. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(19)30307-X

Leclerc, Quentin J; Lindsay, Jodi A; Knight, Gwenan M; (2019) Mathematical modelling to study the horizontal transfer of antimicrobial resistance genes in bacteria: current state of the field and recommendations. Journal of The Royal Society Interface, 16 (157). 20190260-. ISSN 1742-5689 DOI: https://doi.org/10.1098/rsif.2019.0260

Naylor, Nichola R; Pouwels, Koen B; Hope, Russell; Green, Nathan; Henderson, Katherine L; Knight, Gwenan M; Atun, Rifat; Robotham, Julie V; Deeny, Sarah R; (2019) The health and cost burden of antibiotic resistant and susceptible Escherichia coli bacteraemia in the English hospital setting: A national retrospective cohort study. PloS one, 14 (9). e0221944-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0221944

Rhodes, Sophie J; Knight, Gwenan M; Kirschner, Denise E; White, Richard G; Evans, Thomas G; (2019) Dose finding for new vaccines: The role for immunostimulation/immunodynamic modelling. Journal of Theoretical Biology, 465. pp. 51-55. ISSN 0022-5193 DOI: https://doi.org/10.1016/j.jtbi.2019.01.017

Bui, David P; Oren, Eyal; Roe, Denise J; Brown, Heidi E; Harris, Robin B; Knight, Gwenan M; Gilman, Robert H; Grandjean, Louis; (2018) A Case-Control Study to Identify Community Venues Associated with Genetically-clustered, Multidrug-resistant Tuberculosis Disease in Lima, Peru. Clinical infectious diseases, 68 (9). pp. 1547-1555. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy746

Knight, Gwen; Lambert, Helen; Feil, Edward; Holmes, Mark; Lindsay, Jodi; (2018) The importance of cross-disciplinary research to combat antimicrobial resistance: introducing a new pop-up journal, X-AMR. Microbial genomics, 4 (7). pp. 951-952. ISSN 2057-5858 DOI: https://doi.org/10.1099/mic.0.000684

Knight, Gwenan M; Clarkson, Madeleine; de Silva, Thushan I; (2018) Potential impact of influenza vaccine roll-out on antibiotic use in Africa. The Journal of antimicrobial chemotherapy, 73 (8). pp. 2197-2200. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dky172

Knight, Gwenan M; Costelloe, Céire; Deeny, Sarah R; Moore, Luke SP; Hopkins, Susan; Johnson, Alan P; Robotham, Julie V; Holmes, Alison H; (2018) Quantifying where human acquisition of antibiotic resistance occurs: a mathematical modelling study. BMC MEDICINE, 16 (1). 137-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-018-1121-8

Knight, Gwenan M; Dyakova, Eleonora; Mookerjee, Siddharth; Davies, Frances; Brannigan, Eimear T; Otter, Jonathan A; Holmes, Alison H; (2018) Fast and expensive (PCR) or cheap and slow (culture)? A mathematical modelling study to explore screening for carbapenem resistance in UK hospitals. BMC medicine, 16 (1). 141-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-018-1117-4

Knight, Gwenan M; Zimic, Mirko; Funk, Sebastian; Gilman, Robert H; Friedland, Jon S; Grandjean, Louis; (2018) The relative fitness of drug-resistant Mycobacterium tuberculosis: a modelling study of household transmission in Peru. JOURNAL OF THE ROYAL SOCIETY INTERFACE, 15 (143). p. 20180025. ISSN 1742-5689 DOI: https://doi.org/10.1098/rsif.2018.0025

Naylor, Nichola R; Atun, Rifat; Zhu, Nina; Kulasabanathan, Kavian; Silva, Sachin; Chatterjee, Anuja; Knight, Gwenan M; Robotham, Julie V; (2018) Estimating the burden of antimicrobial resistance: a systematic literature review. Antimicrobial resistance and infection control, 7 (1). 58-. ISSN 2047-2994 DOI: https://doi.org/10.1186/s13756-018-0336-y

Rhodes, Sophie J; Guedj, Jeremie; Fletcher, Helen A; Lindenstrøm, Thomas; Scriba, Thomas J; Evans, Thomas G; Knight, Gwenan M; White, Richard G; (2018) Using vaccine Immunostimulation/Immunodynamic modelling methods to inform vaccine dose decision-making. NPJ Vaccines, 3 (1). 36-. ISSN 2059-0105 DOI: https://doi.org/10.1038/s41541-018-0075-3

de Lima Hutchison, C; Knight, G; Stabler, R; Chandler, C; (2018) The modern era must end: antibiotic resistance helps us rethink medicine and farming. BMJ Opinion. https://blogs.bmj.com/bmj/2018/07/11/the-modern-er... Full text not available from this repository.

Knight, Gwenan M; Costelloe, Ceire; Murray, Kris A; Robotham, Julie V; Atun, Rifat; Holmes, Alison H; (2017) Addressing the Unknowns of Antimicrobial Resistance: Quantifying and Mapping the Drivers of Burden. Clinical infectious diseases, 66 (4). pp. 612-616. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix765

Knight, Gwenan M; Zimic, Mirko; Funk, Sebastian; Gilman, Robert H; Friedland, Jon S; Grandjean, Louis; (2017) The relative fitness of drug resistant Mycobacterium tuberculosis: a modelling study of household transmission in Peru. DOI: https://doi.org/10.1101/195313

Rhodes, Sophie J; Sarfas, Charlotte; Knight, Gwenan M; White, Andrew; Pathan, Ansar A; McShane, Helen; Evans, Thomas G; Fletcher, Helen; Sharpe, Sally; White, Richard G; (2017) Using Data from Macaques To Predict Gamma Interferon Responses after Mycobacterium bovis BCG Vaccination in Humans: a Proof-of-Concept Study of Immunostimulation/Immunodynamic Modeling Methods. Clinical and vaccine immunology, 24 (3). ISSN 1556-6811 DOI: https://doi.org/10.1128/CVI.00525-16

Fofana, MO; Shrestha, S; Knight, GM; Cohen, T; White, RG; Cobelens, F; Dowdy, DW; (2016) Role of pyrazinamide in the emergence of extensively drug-resistant tuberculosis: a multi-strain mathematical model. Antimicrobial agents and chemotherapy, 61 (3). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.00498-16

Gomez, GB; Dowdy, DW; Bastos, ML; Zwerling, A; Sweeney, S; Foster, N; Trajman, A; Islam, MA; Kapiga, S; Sinanovic, E; +5 more... Knight, GM; White, RG; Wells, WA; Cobelens, FG; Vassall, A; (2016) Cost and cost-effectiveness of tuberculosis treatment shortening: a model-based analysis. BMC infectious diseases, 16 (1). 726-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-016-2064-3

Harris, RC; Sumner, T; Knight, GM; White, RG; (2016) Systematic review of mathematical models exploring the epidemiological impact of future TB vaccines. Human vaccines & immunotherapeutics, 12 (11). pp. 2813-2832. ISSN 2164-5515 DOI: https://doi.org/10.1080/21645515.2016.1205769

Knight, Gwenan M; Houben, Rein MGJ; Lalli, Marek; White, Richard G; (2016) Ebola: the hidden toll of tuberculosis. Public health action, 6 (1). 2-. ISSN 2220-8372 DOI: https://doi.org/10.5588/pha.16.0019 Full text not available from this repository.

Naylor, Nichola R; Silva, Sachin; Kulasabanathan, Kavian; Atun, Rifat; Zhu, Nina; Knight, Gwenan M; Robotham, Julie; (2016) Methods for estimating the burden of antimicrobial resistance: a systematic literature review protocol. Systematic reviews, 5 (1). 187-. ISSN 2046-4053 DOI: https://doi.org/10.1186/s13643-016-0364-8

Rhodes, Sophie J; Zelmer, Andrea; Knight, Gwenan M; Prabowo, Satria Arief; Stockdale, Lisa; Evans, Thomas G; Lindenstrøm, Thomas; White, Richard G; Fletcher, Helen; (2016) The TB vaccine H56+IC31 dose-response curve is peaked not saturating: Data generation for new mathematical modelling methods to inform vaccine dose decisions. Vaccine, 34 (50). pp. 6285-6291. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.10.060

Vella, V; Moore, LSP; Robotham, JV; Davies, F; Birgand, GJC; Otter, JA; Brannigan, E; Dyakova, E; Knight, GM; Mookerjee, S; +1 more... Holmes, AH; (2016) Isolation demand from carbapenemase-producing Enterobacteriaceae screening strategies based on a West London hospital network. The Journal of hospital infection, 94 (2). pp. 118-124. ISSN 0195-6701 DOI: https://doi.org/10.1016/j.jhin.2016.04.011

Yates, Tom A; Khan, Palwasha Y; Knight, Gwenan M; Taylor, Jonathon G; McHugh, Timothy D; Lipman, Marc; White, Richard G; Cohen, Ted; Cobelens, Frank G; Wood, Robin; +2 more... Moore, David AJ; Abubakar, Ibrahim; (2016) The transmission of Mycobacterium tuberculosis in high burden settings. The Lancet infectious diseases, 16 (2). pp. 227-238. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(15)00499-5

Fonseca, JD; Knight, GM; McHugh, TD; (2015) The complex evolution of antibiotic resistance in Mycobacterium tuberculosis. International journal of infectious diseases, 32. pp. 94-100. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2015.01.014

Knight, Gwenan M; Colijn, Caroline; Shrestha, Sourya; Fofana, Mariam; Cobelens, Frank; White, Richard G; Dowdy, David W; Cohen, Ted; (2015) The Distribution of Fitness Costs of Resistance-Conferring Mutations Is a Key Determinant for the Future Burden of Drug-Resistant Tuberculosis: A Model-Based Analysis. Clinical infectious diseases, 61Supp (suppl ). S147-S154. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/civ579

Knight, Gwenan M; Dharan, Nila J; Fox, Gregory J; Stennis, Natalie; Zwerling, Alice; Khurana, Renuka; Dowdy, David W; (2015) Bridging the gap between evidence and policy for infectious diseases: How models can aid public health decision-making. International journal of infectious diseases, 42. pp. 17-23. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2015.10.024

Knight, Gwenan M; Dodd, Peter J; Grant, Alison D; Fielding, Katherine L; Churchyard, Gavin J; White, Richard G; (2015) Tuberculosis prevention in South Africa. PloS one, 10 (4). e0122514-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0122514

Knight, Gwenan M; Gomez, Gabriela B; Dodd, Peter J; Dowdy, David; Zwerling, Alice; Wells, William A; Cobelens, Frank; Vassall, Anna; White, Richard G; (2015) The Impact and Cost-Effectiveness of a Four-Month Regimen for First-Line Treatment of Active Tuberculosis in South Africa. PloS one, 10 (12). e0145796-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0145796

Rhodes, Sophie J; Knight, Gwenan M; Fielding, Katherine; Scriba, Thomas J; Pathan, Ansar A; McShane, Helen; Fletcher, Helen; White, Richard G; (2015) Individual-level factors associated with variation in mycobacterial-specific immune response: Gender and previous BCG vaccination status. Tuberculosis (Edinburgh, Scotland), 96. pp. 37-43. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2015.10.002

Stanczak-Mrozek, Kinga I; Manne, Anusha; Knight, Gwenan M; Gould, Katherine; Witney, Adam A; Lindsay, Jodi A; (2015) Within-host diversity of MRSA antimicrobial resistances. The Journal of antimicrobial chemotherapy, 70 (8). pp. 2191-2198. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkv119

Fofana, Mariam O; Knight, Gwenan M; Gomez, Gabriela B; White, Richard G; Dowdy, David W; (2014) Population-level impact of shorter-course regimens for tuberculosis: a model-based analysis. PloS one, 9 (5). e96389-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0096389

Funk, Sebastian; Knight, Gwenan M; Jansen, Vincent AA; (2014) Ebola: the power of behaviour change. Nature, 515 (7528). 492-. ISSN 0028-0836 DOI: https://doi.org/10.1038/515492b Full text not available from this repository.

Knight, Gwenan M; Griffiths, Ulla K; Sumner, Tom; Laurence, Yoko V; Gheorghe, Adrian; Vassall, Anna; Glaziou, Philippe; White, Richard G; (2014) Impact and cost-effectiveness of new tuberculosis vaccines in low- and middle-income countries. Proceedings of the National Academy of Sciences of the United States of America, 111 (43). pp. 15520-15525. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1404386111 Full text not available from this repository.

Shrestha, Sourya; Knight, Gwenan M; Fofana, Mariam; Cohen, Ted; White, Richard G; Cobelens, Frank; Dowdy, David W; (2014) Drivers and trajectories of resistance to new first-line drug regimens for tuberculosis. Open forum infectious diseases, 1 (2). ofu073-. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofu073

Dodd, Peter J; Knight, Gwenan M; Lawn, Stephen D; Corbett, Elizabeth L; White, Richard G; (2013) Predicting the long-term impact of antiretroviral therapy scale-up on population incidence of tuberculosis. PloS one, 8 (9). e75466-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0075466

Garnett, James P; Baker, Emma H; Naik, Sonam; Lindsay, Jodi A; Knight, Gwenan M; Gill, Simren; Tregoning, John S; Baines, Deborah L; (2013) Metformin reduces airway glucose permeability and hyperglycaemia-induced Staphylococcus aureus load independently of effects on blood glucose. Thorax, 68 (9). pp. 835-845. ISSN 0040-6376 DOI: https://doi.org/10.1136/thoraxjnl-2012-203178

Knight, Gwenan M; Budd, Emma L; Lindsay, Jodi A; (2013) Large mobile genetic elements carrying resistance genes that do not confer a fitness burden in healthcare-associated meticillin-resistant Staphylococcus aureus. Microbiology (Reading, England), 159 (Pt 8). pp. 1661-1672. ISSN 1350-0872 DOI: https://doi.org/10.1099/mic.0.068551-0 Full text not available from this repository.

Knight, Gwenan M; Budd, Emma L; Whitney, Laura; Thornley, Alastair; Al-Ghusein, Hasan; Planche, Timothy; Lindsay, Jodi A; (2012) Shift in dominant hospital-associated methicillin-resistant Staphylococcus aureus (HA-MRSA) clones over time. The Journal of antimicrobial chemotherapy, 67 (10). pp. 2514-2522. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dks245 Full text not available from this repository.

Lindsay, Jodi A; Knight, Gwenan M; Budd, Emma L; McCarthy, Alex J; (2012) Shuffling of mobile genetic elements (MGEs) in successful healthcare-associated MRSA (HA-MRSA). Mobile genetic elements, 2 (5). pp. 239-243. ISSN 2159-2543 DOI: https://doi.org/10.4161/mge.22085