Conteh, Bakary; Badji, Henry; Jallow, Abdoulie F; Karim, Mehrab; Manneh, Alhagie; Keita, Belali; Sarwar, Golam; Ceesay, Bubacarr E; Jarju, Sheikh; Jabang, Abdoulie MJ; +8 more... Baldeh, Ebrima; Ikumapayi, Usman N; Secka, Ousman; Antonio, Martin; Roca, Anna; D'Alessandro, Umberto; Kotloff, Karen L; Hossain, M Jahangir; (2024) The Enterics for Global Health (EFGH) Shigella Surveillance Study in The Gambia. Open forum infectious diseases, 11 (Suppl ). S84-S90. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofae049

Liu, Jie; Garcia Bardales, Paul F; Islam, Kamrul; Jarju, Sheikh; Juma, Jane; Mhango, Chimwemwe; Naumanga, Queen; Qureshi, Sonia; Sonye, Catherine; Ahmed, Naveed; +38 more... Aziz, Fatima; Bhuiyan, Md Taufiqur Rahman; Charles, Mary; Cunliffe, Nigel A; Abdou, Mahamadou; Galagan, Sean R; Gitteh, Ensa; Guindo, Ibrehima; Jahangir Hossain, M; Jabang, Abdoulie MJ; Jere, Khuzwayo C; Kawonga, Flywell; Keita, Mariama; Keita, Noumou Yakhouba; Kotloff, Karen L; Shapiama Lopez, Wagner V; Munga, Stephen; Paredes Olortegui, Maribel; Omore, Richard; Pavlinac, Patricia B; Qadri, Firdausi; Qamar, Farah Naz; Azadul Alam Raz, SM; Riziki, Laura; Schiaffino, Francesca; Stroup, Suzanne; Traore, Sarata Nassoun; Pinedo Vasquez, Tackeshy; Yousafzai, Mohammad Tahir; Antonio, Martin; Cornick, Jennifer E; Kabir, Furqan; Khanam, Farhana; Kosek, Margaret N; Ochieng, John Benjamin; Platts-Mills, James A; Tennant, Sharon M; Houpt, Eric R; (2024) Shigella Detection and Molecular Serotyping With a Customized TaqMan Array Card in the Enterics for Global Health (EFGH): Shigella Surveillance Study. Open forum infectious diseases, 11 (Suppl ). S34-S40. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofad574

Awuor, Alex O; Ogwel, Billy; Powell, Helen; Verani, Jennifer R; Sow, Samba O; Hossain, M Jahangir; Ochieng, John B; Juma, Jane; Jamka, Leslie P; Roose, Anna; +19 more... Doh, Sanogo; Deichsel, Emily L; Onwuchekwa, Uma; Keita, Adama Mamby; Antonio, Martin; Jones, Joquina Chiquita M; Zaman, Syed MA; Badji, Henry; Kasumba, Irene N; Nasrin, Dilruba; Platts-Mills, James A; Houpt, Eric R; Berendes, David M; Sugerman, Ciara E; Widdowson, Marc-Alain; Tennant, Sharon M; Mintz, Eric D; Omore, Richard; Kotloff, Karen L; (2023) Antibiotic-Prescribing Practices for Management of Childhood Diarrhea in 3 Sub-Saharan African Countries: Findings From the Vaccine Impact on Diarrhea in Africa (VIDA) Study, 2015-2018. Clinical Infectious Diseases, 76 (76 Sup). S32-S40. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciac980

Buchwald, Andrea G; Verani, Jennifer R; Keita, Adama Mamby; Jahangir Hossain, M; Roose, Anna; Sow, Samba O; Omore, Richard; Doh, Sanogo; Jones, Joquina Chiquita M; Nasrin, Dilruba; +10 more... Zaman, Syed MA; Okoi, Catherine; Antonio, Martin; Ochieng, John B; Juma, Jane; Onwuchekwa, Uma; Powell, Helen; Platts-Mills, James A; Tennant, Sharon M; Kotloff, Karen L; (2023) Etiology, Presentation, and Risk Factors for Diarrheal Syndromes in 3 Sub-Saharan African Countries After the Introduction of Rotavirus Vaccines From the Vaccine Impact on Diarrhea in Africa (VIDA) Study. Clinical Infectious Diseases, 76 (76 Sup). S12-S22. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciad022

Hawkins, Paulina A; Chochua, Sopio; Lo, Stephanie W; Belman, Sophie; Antonio, Martin; Kwambana-Adams, Brenda; von Gottberg, Anne; du Plessis, Mignon; Cornick, Jen; Beall, Bernard; +4 more... Breiman, Robert F; Bentley, Stephen D; McGee, Lesley; The Global Pneumococcal Sequencing Consortium; (2023) A global genomic perspective on the multidrug-resistant Streptococcus pneumoniae 15A-CC63 sub-lineage following pneumococcal conjugate vaccine introduction. Microbial genomics, 9 (4). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000998

Hossain, M Jahangir; Powell, Helen; Sow, Samba O; Omore, Richard; Roose, Anna; Jones, Joquina Chiquita M; Zaman, Syed MA; Badji, Henry; Sarwar, Golam; Kasumba, Irene N; +14 more... Onwuchekwa, Uma; Doh, Sanogo; Awuor, Alex O; Ochieng, John B; Verani, Jennifer R; Liu, Jie; Tennant, Sharon M; Nasrin, Dilruba; Jamka, Leslie P; Liang, Yuanyuan; Howie, Stephen RC; Antonio, Martin; Houpt, Eric R; Kotloff, Karen L; (2023) Clinical and Epidemiologic Features of Cryptosporidium-Associated Diarrheal Disease Among Young Children Living in Sub-Saharan Africa: The Vaccine Impact on Diarrhea in Africa (VIDA) Study. Clinical Infectious Diseases, 76 (76 Sup). S97-S105. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciad044

Kasumba, Irene N; Badji, Henry; Powell, Helen; Hossain, M Jahangir; Omore, Richard; Sow, Samba O; Verani, Jennifer R; Platts-Mills, James A; Widdowson, Marc-Alain; Zaman, Syed MA; +19 more... Jones, Jennifer; Sen, Sunil; Permala-Booth, Jasnehta; Nasrin, Shamima; Roose, Anna; Nasrin, Dilruba; Ochieng, John Benjamin; Juma, Jane; Doh, Sanogo; Jones, Joquina Chiquita M; Antonio, Martin; Awuor, Alex O; Sugerman, Ciara E; Watson, Nora; Focht, Christopher; Liu, Jie; Houpt, Eric; Kotloff, Karen L; Tennant, Sharon M; (2023) Shigella in Africa: New Insights From the Vaccine Impact on Diarrhea in Africa (VIDA) Study. Clinical Infectious Diseases, 76 (76 Sup). S66-S76. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciac969

Kasumba, Irene N; Powell, Helen; Omore, Richard; Hossain, M Jahangir; Sow, Samba O; Ochieng, John Benjamin; Badji, Henry; Verani, Jennifer R; Widdowson, Marc-Alain; Sen, Sunil; +21 more... Nasrin, Shamima; Permala-Booth, Jasnehta; Jones, Jennifer A; Roose, Anna; Nasrin, Dilruba; Sugerman, Ciara E; Juma, Jane; Awuor, Alex; Jones, Joquina Chiquita M; Doh, Sanogo; Okoi, Catherine; Zaman, Syed MA; Antonio, Martin; Hunsperger, Elizabeth; Onyango, Clayton; Platts-Mills, James; Liu, Jie; Houpt, Eric; Neuzil, Kathleen M; Kotloff, Karen L; Tennant, Sharon M; (2023) Prevalence of Salmonella in Stool During the Vaccine Impact on Diarrhea in Africa (VIDA) Study, 2015-2018. Clinical Infectious Diseases, 76 (76 Sup). S87-S96. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciac985

Keita, Adama Mamby; Doh, Sanogo; Sow, Samba O; Powell, Helen; Omore, Richard; Jahangir Hossain, M; Ogwel, Billy; Ochieng, John B; Jones, Joquina Chiquita M; Zaman, Syed MA; +20 more... Awuor, Alex O; Juma, Jane; Nasrin, Dilruba; Liu, Jie; Traoré, Awa; Onwuchekwa, Uma; Badji, Henry; Sarwar, Golam; Antonio, Martin; Houpt, Eric R; Tennant, Sharon M; Kasumba, Irene N; Jamka, Leslie P; Roose, Anna; Platts-Mills, James A; Verani, Jennifer R; Tate, Jacqueline E; Parashar, Umesh D; Neuzil, Kathleen M; Kotloff, Karen L; (2023) Prevalence, Clinical Severity, and Seasonality of Adenovirus 40/41, Astrovirus, Sapovirus, and Rotavirus Among Young Children With Moderate-to-Severe Diarrhea: Results From the Vaccine Impact on Diarrhea in Africa (VIDA) Study. Clinical Infectious Diseases, 76 (76 Sup). S123-S131. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciad060

Khan, Dam; Thomas, Shola-Able; Tientcheu, Peggy-Estelle; Suso, Sambou MS; Dupont, Christopher; Kwambana-Adams, Brenda; Mohammed, Nuredin Ibrahim; Nicol, Mark P; Antonio, Martin; (2023) Comparison of DNA concentration and bacterial pathogen PCR detection when using two DNA extraction kits for nasopharyngeal/oropharyngeal samples. PLoS One, 18 (8). e0289557-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0289557

Nasrin, Dilruba; Liang, Yuanyuan; Powell, Helen; Casanova, Ines Gonzalez; Sow, Samba O; Hossain, M Jahangir; Omore, Richard; Sanogo, Doh; Tamboura, Boubou; Zaman, Syed MA; +13 more... Antonio, Martin; Jones, Joquina Chiquita M; Awuor, Alex O; Kasumba, Irene N; Ochieng, John B; Badji, Henry; Verani, Jennifer R; Widdowson, Marc-Alain; Roose, Anna; Jamka, Leslie P; Tennant, Sharon M; Ramakrishnan, Usha; Kotloff, Karen L; (2023) Moderate-to-Severe Diarrhea and Stunting Among Children Younger Than 5 Years: Findings From the Vaccine Impact on Diarrhea in Africa (VIDA) Study. Clinical Infectious Diseases, 76 (76 Sup). S41-S48. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciac945

Ochieng, John B; Powell, Helen; Sugerman, Ciara E; Omore, Richard; Ogwel, Billy; Juma, Jane; Awuor, Alex O; Sow, Samba O; Sanogo, Doh; Onwuchekwa, Uma; +22 more... Keita, Adama Mamby; Traoré, Awa; Badji, Henry; Hossain, M Jahangir; Jones, Joquina Chiquita M; Kasumba, Irene N; Nasrin, Dilruba; Roose, Anna; Liang, Yuanyuan; Jamka, Leslie P; Antonio, Martin; Platts-Mills, James A; Liu, Jie; Houpt, Eric R; Mintz, Eric D; Hunsperger, Elizabeth; Onyango, Clayton O; Strockbine, Nancy; Widdowson, Marc-Alain; Verani, Jennifer R; Tennant, Sharon M; Kotloff, Karen L; (2023) Epidemiology of Enteroaggregative, Enteropathogenic, and Shiga Toxin-Producing Escherichia coli Among Children Aged <5 Years in 3 Countries in Africa, 2015-2018: Vaccine Impact on Diarrhea in Africa (VIDA) Study. Clinical Infectious Diseases, 76 (76 Sup). S77-S86. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciad035

Schwartz, Lauren M; Oshinsky, Jennifer; Reymann, Mardi; Esona, Mathew D; Bowen, Michael D; Jahangir Hossain, M; Zaman, Syed MA; Jones, Joquina Chiquita M; Antonio, Martin; Badji, Henry; +23 more... Sarwar, Golam; Sow, Samba O; Sanogo, Doh; Keita, Adama Mamby; Tamboura, Boubou; Traoré, Awa; Onwuchekwa, Uma; Omore, Richard; Verani, Jennifer R; Awuor, Alex O; Ochieng, John B; Juma, Jane; Ogwel, Billy; Parashar, Umesh D; Tate, Jacqueline E; Kasumba, Irene N; Tennant, Sharon M; Neuzil, Kathleen M; Rowhani-Rahbar, Ali; Elizabeth Halloran, M; Atmar, Robert L; Pasetti, Marcela F; Kotloff, Karen L; (2023) Histo-Blood Group Antigen Null Phenotypes Associated With a Decreased Risk of Clinical Rotavirus Vaccine Failure Among Children <2 Years of Age Participating in the Vaccine Impact on Diarrhea in Africa (VIDA) Study in Kenya, Mali, and the Gambia. Clinical Infectious Diseases, 76 (76 Sup). S153-S161. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciac910

Buskirk, Amanda D; Ndungo, Esther; Shimanovich, Avital A; Lam, Diana; Blackwelder, William C; Ikumapayi, Usman N; Ma, Bing; Powell, Helen; Antonio, Martin; Nataro, James P; +2 more... Kaper, James B; Pasetti, Marcela F; (2022) Mucosal Immune Profiles Associated with Diarrheal Disease Severity in Shigella- and Enteropathogenic Escherichia coli-Infected Children Enrolled in the Global Enteric Multicenter Study. mBio, 13 (4). e0053822-. DOI: https://doi.org/10.1128/mbio.00538-22 Item availability may be restricted.

Chaguza, Chrispin; Ebruke, Chinelo; Senghore, Madikay; Lo, Stephanie W; Tientcheu, Peggy-Estelle; Gladstone, Rebecca A; Tonkin-Hill, Gerry; Cornick, Jennifer E; Yang, Marie; Worwui, Archibald; +11 more... McGee, Lesley; Breiman, Robert F; Klugman, Keith P; Kadioglu, Aras; Everett, Dean B; Mackenzie, Grant; Croucher, Nicholas J; Roca, Anna; Kwambana-Adams, Brenda A; Antonio, Martin; Bentley, Stephen D; (2022) Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci. Genome biology and evolution, 14 (4). evac052-. ISSN 1759-6653 DOI: https://doi.org/10.1093/gbe/evac052

Darboe, Saffiatou; Bradbury, Richard S; Phelan, Jody; Kanteh, Abdoulie; Muhammad, Abdul-Khalie; Worwui, Archibald; Yang, Shangxin; Nwakanma, Davis; Perez-Sepulveda, Blanca; Kariuki, Samuel; +2 more... Kwambana-Adams, Brenda; Antonio, Martin; (2022) Genomic diversity and antimicrobial resistance among non-typhoidal Salmonella associated with human disease in The Gambia. MICROBIAL GENOMICS, 8 (3). DOI: https://doi.org/10.1099/mgen.0.000785

Lo, Stephanie W; Mellor, Kate; Cohen, Robert; Alonso, Alba Redin; Belman, Sophie; Kumar, Narender; Hawkins, Paulina A; Gladstone, Rebecca A; von Gottberg, Anne; Veeraraghavan, Balaji; +30 more... Ravikumar, KL; Kandasamy, Rama; Pollard, Sir Andrew J; Saha, Samir K; Bigogo, Godfrey; Antonio, Martin; Kwambana-Adams, Brenda; Mirza, Shaper; Shakoor, Sadia; Nisar, Imran; Cornick, Jennifer E; Lehmann, Deborah; Ford, Rebecca L; Sigauque, Betuel; Turner, Paul; Moïsi, Jennifer; Obaro, Stephen K; Dagan, Ron; Diawara, Idrissa; Skoczyńska, Anna; Wang, Hui; Carter, Philip E; Klugman, Keith P; Rodgers, Gail; Breiman, Robert F; McGee, Lesley; Bentley, Stephen D; Muñoz-Almagro, Carmen; Varon, Emmanuelle; Global Pneumococcal Sequencing Consortium; (2022) Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study. The Lancet Microbe, 3 (10). e735-e743. ISSN 2666-5247 DOI: https://doi.org/10.1016/S2666-5247(22)00158-6

Ndlangisa, Kedibone M; du Plessis, Mignon; Lo, Stephanie; de Gouveia, Linda; Chaguza, Chrispin; Antonio, Martin; Kwambana-Adams, Brenda; Cornick, Jennifer; Everett, Dean B; Dagan, Ron; +32 more... Hawkins, Paulina A; Beall, Bernard; Corso, Alejandra; Grassi Almeida, Samanta Cristine; Ochoa, Theresa J; Obaro, Stephen; Shakoor, Sadia; Donkor, Eric S; Gladstone, Rebecca A; Ho, Pak Leung; Paragi, Metka; Doiphode, Sanjay; Srifuengfung, Somporn; Ford, Rebecca; Moïsi, Jennifer; Saha, Samir K; Bigogo, Godfrey; Sigauque, Betuel; Eser, Özgen Köseoglu; Elmdaghri, Naima; Titov, Leonid; Turner, Paul; Kumar, KL Ravi; Kandasamy, Rama; Egorova, Ekaterina; Ip, Margaret; Breiman, Robert F; Klugman, Keith P; McGee, Lesley; Bentley, Stephen D; von Gottberg, Anne; The Global Pneumococcal Sequencing Consortium; (2022) A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV. Microbial genomics, 8 (4). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000746

Okoi, Catherine; Anderson, Suzanne T; Mulwa, Sarah; Worwui, Archibald; Antonio, Martin; Gehre, Florian; Adetifa, Ifedayo; (2022) Pulmonary non-tuberculous mycobacteria in colonisation and disease in The Gambia. Scientific reports, 12 (1). 19523-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-022-22777-x

Senghore, Madikay; Chaguza, Chrispin; Bojang, Ebrima; Tientcheu, Peggy-Estelle; Bancroft, Rowan E; Lo, Stephanie W; Gladstone, Rebecca A; McGee, Lesley; Worwui, Archibald; Foster-Nyarko, Ebenezer; +9 more... Ceesay, Fatima; Okoi, Catherine Bi; Klugman, Keith P; Breiman, Robert F; Bentley, Stephen D; Adegbola, Richard; Antonio, Martin; Hanage, William P; Kwambana-Adams, Brenda A; (2022) Widespread sharing of pneumococcal strains in a rural African setting: proximate villages are more likely to share similar strains that are carried at multiple timepoints. Microbial genomics, 8 (2). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000732

Abatan, Baderinwa; Agboghoroma, Orighomisan; Akemoke, Fatai; Antonio, Martin; Awokola, Babatunde; Bittaye, Mustapha; Bojang, Abdoulie; Bojang, Kalifa; Brotherton, Helen; Cerami, Carla; +37 more... Clarke, Ed; D'Alessandro, Umberto; de Silva, Thushan; Drammeh, Mariama; Forrest, Karen; Hofmann, Natalie; Jagne, Sherifo; Jah, Hawanatu; Jarju, Sheikh; Jaye, Assan; Jobe, Modou; Kampmann, Beate; Manjang, Buba; Martinez-Alvarez, Melisa; Mohammed, Nuredin; Nadjm, Behzad; Ndiath, Mamadou Ousmane; Nkereuwem, Esin; Nwakanma, Davis; Oko, Francis; Okoh, Emmanuel; Okomo, Uduak; Olatunji, Yekini; Oriero, Eniyou; Prentice, Andrew M; Roberts, Charles; Roca, Anna; Sabally, Babanding; Sambou, Sana; Samateh, Ahmadou; Secka, Ousman; Sesay, Abdul Karim; Singhateh, Yankuba; Susso, Bubacarr; Usuf, Effua; Vilane, Aminata; Wariri, Oghenebrume; (2021) Intense and Mild First Epidemic Wave of Coronavirus Disease, The Gambia. Emerging infectious diseases, 27 (8). pp. 2064-2072. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2708.204954

Baillie, Vicky L; Moore, David P; Mathunjwa, Azwifarwi; Baggett, Henry C; Brooks, Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Knoll, Maria Deloria; Kotloff, Karen L; +24 more... Levine, Orin S; O'Brien, Katherine L; Scott, Anthony G; Thea, Donald M; Antonio, Martin; Awori, Juliet O; Driscoll, Amanda J; Fancourt, Nicholas SS; Higdon, Melissa M; Karron, Ruth A; Morpeth, Susan C; Mulindwa, Justin M; Murdoch, David R; Park, Daniel E; Prosperi, Christine; Rahman, Mohammed Ziaur; Rahman, Mustafizur; Salaudeen, Rasheed A; Sawatwong, Pongpun; Somwe, Somwe Wa; Sow, Samba O; Tapia, Milagritos D; Simões, Eric AF; Madhi, Shabir A; (2021) Epidemiology of the Rhinovirus (RV) in African and Southeast Asian Children: A Case-Control Pneumonia Etiology Study. Viruses, 13 (7). p. 1249. ISSN 1999-4915 DOI: https://doi.org/10.3390/v13071249

Chaguza, Chrispin; Senghore, Madikay; Bojang, Ebrima; Lo, Stephanie W; Ebruke, Chinelo; Gladstone, Rebecca A; Tientcheu, Peggy-Estelle; Bancroft, Rowan E; Worwui, Archibald; Foster-Nyarko, Ebenezer; +10 more... Ceesay, Fatima; Okoi, Catherine; McGee, Lesley; Klugman, Keith P; Breiman, Robert F; Barer, Michael R; Adegbola, Richard A; Antonio, Martin; Bentley, Stephen D; Kwambana-Adams, Brenda A; (2021) Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life. Frontiers in pediatrics, 8. 587730-. ISSN 2296-2360 DOI: https://doi.org/10.3389/fped.2020.587730

Coscolla, Mireia; Gagneux, Sebastien; Menardo, Fabrizio; Loiseau, Chloé; Ruiz-Rodriguez, Paula; Borrell, Sonia; Otchere, Isaac Darko; Asante-Poku, Adwoa; Asare, Prince; Sánchez-Busó, Leonor; +19 more... Gehre, Florian; Sanoussi, C N'Dira; Antonio, Martin; Affolabi, Dissou; Fyfe, Janet; Beckert, Patrick; Niemann, Stefan; Alabi, Abraham S; Grobusch, Martin P; Kobbe, Robin; Parkhill, Julian; Beisel, Christian; Fenner, Lukas; Böttger, Erik C; Meehan, Conor J; Harris, Simon R; de Jong, Bouke C; Yeboah-Manu, Dorothy; Brites, Daniela; (2021) Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history. Microbial genomics, 7 (2). pp. 1-14. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000477

Diallo, Kanny; Feteh, Vitalis F; Ibe, Lilian; Antonio, Martin; Caugant, Dominique A; du Plessis, Mignon; Deghmane, Ala-Eddine; Feavers, Ian M; Fernandez, Katya; Fox, LeAnne M; +7 more... Rodrigues, Charlene MC; Ronveaux, Olivier; Taha, Muhamed-Kheir; Wang, Xin; Brueggemann, Angela B; Maiden, Martin CJ; Harrison, Odile B; (2021) Molecular diagnostic assays for the detection of common bacterial meningitis pathogens: A narrative review. EBioMedicine, 65. 103274-. ISSN 2352-3964 DOI: https://doi.org/10.1016/j.ebiom.2021.103274

Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ikumapayi, Usman N; Sarwar, Golam; Okoi, Catherine; Tientcheu, Peggy-Estelle Maguiagueu; Defernez, Marianne; O'Grady, Justin; Antonio, Martin; Pallen, Mark J; (2021) Genomic diversity of Escherichia coli from healthy children in rural Gambia. PeerJ, 9. e10572-. ISSN 2167-8359 DOI: https://doi.org/10.7717/peerj.10572

Gambia Pneumococcal Surveillance Group; Mackenzie, Grant A; Hill, Philip C; Jeffries, David J; Ndiaye, Malick; Sahito, Shah M; Hossain, Ilias; Uchendu, Uchendu; Ameh, David; Adeyemi, Oyedeji; +40 more... Pathirana, Jayani; Olatunji, Yekini; Abatan, Baderinwa; Muhammad, Bilquees S; Ahameefula, Ebirim; Fombah, Augustin E; Adeshola, Banjo; Lobga, Babila G; Saha, Debasish; Mackenzie, Roslyn; Odutola, Aderonke; Plumb, Ian D; Akano, Aliu; Ebruke, Bernard E; Ideh, Readon C; Kuti, Bankole; Githua, Peter; Olutunde, Emmanuel; Ofordile, Ogochukwu; Green, Edward; Usuf, Effua; Badji, Henry; Ikumapayi, Usman Na; Manjang, Ahmed; Salaudeen, Rasheed; Nsekpong, E David; Jarju, Sheikh; Antonio, Martin; Sambou, Sana; Ceesay, Lamin; Lowe-Jallow, Yamundow; Fofana, Sidat; Jasseh, Momodou; Mulholland, Kim; Knoll, Maria; Levine, Orin S; Howie, Stephen R; Adegbola, Richard A; Greenwood, Brian M; Corrah, Tumani; (2021) Impact of the introduction of pneumococcal conjugate vaccination on invasive pneumococcal disease and pneumonia in The Gambia: 10 years of population-based surveillance. The Lancet. Infectious diseases, 21 (9). pp. 1293-1302. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(20)30880-X

Gilroy, Rachel; Ravi, Anuradha; Getino, Maria; Pursley, Isabella; Horton, Daniel L; Alikhan, Nabil-Fareed; Baker, Dave; Gharbi, Karim; Hall, Neil; Watson, Mick; +10 more... Adriaenssens, Evelien M; Foster-Nyarko, Ebenezer; Jarju, Sheikh; Secka, Arss; Antonio, Martin; Oren, Aharon; Chaudhuri, Roy R; La Ragione, Roberto; Hildebrand, Falk; Pallen, Mark J; (2021) Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture. PeerJ, 9. e10941-. ISSN 2167-8359 DOI: https://doi.org/10.7717/peerj.10941

Howie, Stephen RC; Ebruke, Bernard E; McLellan, Jessica L; Deloria Knoll, Maria; Dione, Michel M; Feikin, Daniel R; Haddix, Meredith; Hammitt, Laura L; Machuka, Eunice M; Murdoch, David R; +10 more... O'Brien, Katherine L; Ofordile, Ogochukwu; Olutunde, Oluyinka E; Parker, David; Prosperi, Christine; Salaudeen, Rasheed A; Shamsul, Arifin; Mackenzie, Grant; Antonio, Martin; Zaman, Syed MA; (2021) The Etiology of Childhood Pneumonia in The Gambia: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study. The Pediatric infectious disease journal, 40 (9S). S7-S17. ISSN 0891-3668 DOI: https://doi.org/10.1097/INF.0000000000002766

Jabang, Sona; Erhart, Annette; Darboe, Saffiatou; Baldeh, Aru-Kumba; Delforge, Valerie; Watson, Gabriella; Foster-Nyarko, Ebenezer; Salaudeen, Rasheed; Lawal, Bolarinde; Mackenzie, Grant; +4 more... Botteaux, Anne; Antonio, Martin; Smeesters, Pierre R; On Behalf Of The Mrcg StrepA Study Group; (2021) Molecular Epidemiology of Group A Streptococcus Infections in The Gambia. Vaccines, 9 (2). p. 124. DOI: https://doi.org/10.3390/vaccines9020124

Kalizang'oma, Akuzike; Chaguza, Chrispin; Gori, Andrea; Davison, Charlotte; Beleza, Sandra; Antonio, Martin; Beall, Bernard; Goldblatt, David; Kwambana-Adams, Brenda; Bentley, Stephen D; +1 more... Heyderman, Robert S; (2021) Streptococcus pneumoniae serotypes that frequently colonise the human nasopharynx are common recipients of penicillin-binding protein gene fragments from Streptococcus mitis. Microbial genomics, 7 (9). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000622

Kanteh, Abdoulie; Manneh, Jarra; Jabang, Sona; Kujabi, Mariama A; Sanyang, Bakary; Oboh, Mary A; Bojang, Abdoulie; Jallow, Haruna S; Nwakanma, Davis; Secka, Ousman; +8 more... Roca, Anna; Amambua-Ngwa, Alfred; Antonio, Martin; Baldeh, Ignatius; Forrest, Karen; Samateh, Ahmadou Lamin; D'Alessandro, Umberto; Sesay, Abdul Karim; (2021) Origin of imported SARS-CoV-2 strains in The Gambia identified from whole genome sequences. PloS one, 16 (8). e0241942-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0241942

Kasumba, Irene N; Pulford, Caisey V; Perez-Sepulveda, Blanca M; Sen, Sunil; Sayed, Nurulla; Permala-Booth, Jasnehta; Livio, Sofie; Heavens, Darren; Low, Ross; Hall, Neil; +35 more... Roose, Anna; Powell, Helen; Farag, Tamer; Panchalingham, Sandra; Berkeley, Lynette; Nasrin, Dilruba; Blackwelder, William C; Wu, Yukun; Tamboura, Boubou; Sanogo, Doh; Onwuchekwa, Uma; Sow, Samba O; Ochieng, John B; Omore, Richard; Oundo, Joseph O; Breiman, Robert F; Mintz, Eric D; O'Reilly, Ciara E; Antonio, Martin; Saha, Debasish; Hossain, M Jahangir; Mandomando, Inacio; Bassat, Quique; Alonso, Pedro L; Ramamurthy, T; Sur, Dipika; Qureshi, Shahida; Zaidi, Anita KM; Hossain, Anowar; Faruque, Abu SG; Nataro, James P; Kotloff, Karen L; Levine, Myron M; Hinton, Jay CD; Tennant, Sharon M; (2021) Characteristics of Salmonella Recovered From Stools of Children Enrolled in the Global Enteric Multicenter Study. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 73 (4). pp. 631-641. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciab051

Kwambana-Adams, Brenda Anna; Cohen, Adam L; Hampton, Lee; Nhantumbo, Aquino Albino; Heyderman, Robert S; Antonio, Martin; Bita, Andre; Mwenda, Jason Mathiu; (2021) Toward Establishing Integrated, Comprehensive, and Sustainable Meningitis Surveillance in Africa to Better Inform Vaccination Strategies. The Journal of infectious diseases, 224 (12 Sup). S299-S306. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiab268

Nabwera, Helen M; Espinoza, Josh L; Worwui, Archibald; Betts, Modupeh; Okoi, Catherine; Sesay, Abdul K; Bancroft, Rowan; Agbla, Schadrac C; Jarju, Sheikh; Bradbury, Richard S; +9 more... Colley, Mariama; Jallow, Amadou T; Liu, Jie; Houpt, Eric R; Prentice, Andrew M; Antonio, Martin; Bernstein, Robin M; Dupont, Christopher L; Kwambana-Adams, Brenda A; (2021) Interactions between fecal gut microbiome, enteric pathogens, and energy regulating hormones among acutely malnourished rural Gambian children. EBioMedicine, 73. 103644-. ISSN 2352-3964 DOI: https://doi.org/10.1016/j.ebiom.2021.103644

Nakamura, Tomoka; Cohen, Adam L; Schwartz, Stephanie; Mwenda, Jason M; Weldegebriel, Goitom; Biey, Joseph NM; Katsande, Reggis; Ghoniem, Amany; Fahmy, Kamal; Rahman, Hossam Abdel; +40 more... Videbaek, Dovile; Daniels, Danni; Singh, Simarjit; Wasley, Annemarie; Rey-Benito, Gloria; de Oliveira, Lucia; Ortiz, Claudia; Tondo, Emmanuel; Liyanage, Jayantha BL; Sharifuzzaman, Mohammad; Grabovac, Varja; Batmunkh, Nyambat; Logronio, Josephine; Heffelfinger, James; Fox, Kimberly; De Gouveia, Linda; von Gottberg, Anne; Du Plessis, Mignon; Kwambana-Adams, Brenda; Antonio, Martin; El Gohary, Samaa; Azmy, Aya; Gamal, Asmaa; Voropaeva, Elena; Egorova, Ekaterina; Urban, Yulia; Duarte, Carolina; Veeraraghavan, Balaji; Saha, Samir; Howden, Ben; Sait, Michelle; Jung, Sangoun; Bae, Songmee; Litt, David; Seaton, Shila; Slack, Mary; Antoni, Sebastien; Ouattara, Mahamoudou; Van Beneden, Chris; Serhan, Fatima; (2021) The Global Landscape of Pediatric Bacterial Meningitis Data Reported to the World Health Organization-Coordinated Invasive Bacterial Vaccine-Preventable Disease Surveillance Network, 2014-2019. The Journal of infectious diseases, 224 (12 Sup). S161-S173. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiab217

Nasrin, Dilruba; Blackwelder, William C; Sommerfelt, Halvor; Wu, Yukun; Farag, Tamer H; Panchalingam, Sandra; Biswas, Kousick; Saha, Debasish; Jahangir Hossain, M; Sow, Samba O; +31 more... Reiman, Robert FB; Sur, Dipika; Faruque, Abu SG; Zaidi, Anita KM; Sanogo, Doh; Tamboura, Boubou; Onwuchekwa, Uma; Manna, Byomkesh; Ramamurthy, Thandavarayan; Kanungo, Suman; Omore, Richard; Ochieng, John B; Oundo, Joseph O; Das, Sumon K; Ahmed, Shahnawaz; Qureshi, Shahida; Quadri, Farheen; Adegbola, Richard A; Antonio, Martin; Mandomando, Inacio; Nhampossa, Tacilta; Bassat, Quique; Roose, Anna; O'Reilly, Ciara E; Mintz, Eric D; Ramakrishnan, Usha; Powell, Helen; Liang, Yuanyuan; Nataro, James P; Levine, Myron M; Kotloff, Karen L; (2021) Pathogens Associated With Linear Growth Faltering in Children With Diarrhea and Impact of Antibiotic Treatment: The Global Enteric Multicenter Study. The Journal of infectious diseases, 224 (12 Sup). S848-S855. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiab434

Park, Daniel E; Higdon, Melissa M; Prosperi, Christine; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Steve RC; Kotloff, Karen L; Levine, Orin S; +21 more... Madhi, Shabir A; Murdoch, David R; O'Brien, Katherine L; Scott, J Anthony G; Thea, Donald M; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; Bunthi, Charatdao; Kwenda, Geoffrey; Mackenzie, Grant A; Moore, David P; Morpeth, Susan C; Mwananyanda, Lawrence; Paveenkittiporn, Wantana; Ziaur Rahman, Mohammed; Rahman, Mustafizur; Rhodes, Julia; Sow, Samba O; Tapia, Milagritos D; Deloria Knoll, Maria; (2021) Upper Respiratory Tract Co-detection of Human Endemic Coronaviruses and High-density Pneumococcus Associated With Increased Severity Among HIV-Uninfected Children Under 5 Years Old in the PERCH Study. Pediatric Infectious Disease Journal, 40 (6). pp. 503-512. ISSN 0891-3668 DOI: https://doi.org/10.1097/INF.0000000000003139

Sanoussi, C N'Dira; Coscolla, Mireia; Ofori-Anyinam, Boatema; Otchere, Isaac Darko; Antonio, Martin; Niemann, Stefan; Parkhill, Julian; Harris, Simon; Yeboah-Manu, Dorothy; Gagneux, Sebastien; +4 more... Rigouts, Leen; Affolabi, Dissou; de Jong, Bouke C; Meehan, Conor J; (2021) Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv. Microbial genomics, 7 (7). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000437

Senghore, Madikay; Tientcheu, Peggy-Estelle; Worwui, Archibald Kwame; Jarju, Sheikh; Okoi, Catherine; Suso, Sambou MS; Foster-Nyarko, Ebenezer; Ebruke, Chinelo; Sonko, Mohamadou; Kourna, Mamdou Hama; +19 more... Agossou, Joseph; Tsolenyanu, Enyonam; Renner, Lorna Awo; Ansong, Daniel; Sanneh, Bakary; Cisse, Catherine Boni; Boula, Angeline; Miwanda, Berthe; Lo, Stephanie W; Gladstone, Rebecca A; Schwartz, Stephanie; Hawkins, Paulina; McGee, Lesley; Klugman, Keith P; Breiman, Robert F; Bentley, Stephen D; Mwenda, Jason M; Kwambana-Adams, Brenda Anna; Antonio, Martin; (2021) Phylogeography and resistome of pneumococcal meningitis in West Africa before and after vaccine introduction. Microbial genomics, 7 (7). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000506

Chaguza, Chrispin; Senghore, Madikay; Bojang, Ebrima; Gladstone, Rebecca A; Lo, Stephanie W; Tientcheu, Peggy-Estelle; Bancroft, Rowan E; Worwui, Archibald; Foster-Nyarko, Ebenezer; Ceesay, Fatima; +9 more... Okoi, Catherine; McGee, Lesley; Klugman, Keith P; Breiman, Robert F; Barer, Michael R; Adegbola, Richard A; Antonio, Martin; Bentley, Stephen D; Kwambana-Adams, Brenda A; (2020) Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation. Nature communications, 11 (1). 3442-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-020-17327-w

Chaguza, Chrispin; Yang, Marie; Cornick, Jennifer E; du Plessis, Mignon; Gladstone, Rebecca A; Kwambana-Adams, Brenda A; Lo, Stephanie W; Ebruke, Chinelo; Tonkin-Hill, Gerry; Peno, Chikondi; +16 more... Senghore, Madikay; Obaro, Stephen K; Ousmane, Sani; Pluschke, Gerd; Collard, Jean-Marc; Sigaùque, Betuel; French, Neil; Klugman, Keith P; Heyderman, Robert S; McGee, Lesley; Antonio, Martin; Breiman, Robert F; von Gottberg, Anne; Everett, Dean B; Kadioglu, Aras; Bentley, Stephen D; (2020) Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism. Communications biology, 3 (1). 559-. ISSN 2399-3642 DOI: https://doi.org/10.1038/s42003-020-01290-9

Ebruke, Bernard E; Deloria Knoll, Maria; Haddix, Meredith; Zaman, Syed MA; Prosperi, Christine; Feikin, Daniel R; Hammitt, Laura L; Levine, Orin S; O'Brien, Katherine L; Murdoch, David R; +22 more... Brooks, W Abdullah; Scott, J Anthony G; Kotloff, Karen L; Madhi, Shabir A; Thea, Donald M; Baillie, Vicky L; Chisti, Mohammod Jobayer; Dione, Michel; Driscoll, Amanda J; Fancourt, Nicholas; Karron, Ruth A; Le, Tham T; Mohamed, Shebe; Moore, David P; Morpeth, Susan C; Mwaba, John; Mwansa, James; Bin Shahid, Abu Sadat Mohammad Sayeem; Sow, Samba O; Tapia, Milagritos D; Antonio, Martin; Howie, Stephen RC; (2020) The Etiology of Pneumonia From Analysis of Lung Aspirate and Pleural Fluid Samples: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 73 (11). e3788-e3796. ISSN 1537-6591 DOI: https://doi.org/10.1093/cid/ciaa1032

Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thilliez, Gaëtan; Thomson, Nicholas M; Baker, David; Kay, Gemma; Cramer, Jennifer D; O'Grady, Justin; Antonio, Martin; +1 more... Pallen, Mark J; (2020) Genomic diversity of Escherichia coli isolates from non-human primates in the Gambia. Microbial genomics, 6 (9). pp. 1-15. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000428

Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thilliez, Gaëtan; Thomson, Nicholas; Baker, David; Kay, Gemma; Cramer, Jennifer D; O’Grady, Justin; Antonio, Martin; +1 more... Pallen, Mark J; (2020) Genomic diversity of<i>Escherichia coli</i>isolates from non-human primates in the Gambia. Biorxiv. DOI: https://doi.org/10.1101/2020.02.29.971309

Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thomson, Nicholas M; Jarju, Sheikh; Kwambana-Adams, Brenda A; Secka, Arss; O'Grady, Justin; Antonio, Martin; Pallen, Mark John; (2020) Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia. Microbial Genomics, 7 (1). pp. 1-15. DOI: https://doi.org/10.1099/mgen.0.000484

Gladstone, Rebecca A; Lo, Stephanie W; Goater, Richard; Yeats, Corin; Taylor, Ben; Hadfield, James; Lees, John A; Croucher, Nicholas J; van Tonder, Andries J; Bentley, Leon J; +33 more... Quah, Fu Xiang; Blaschke, Anne J; Pershing, Nicole L; Byington, Carrie L; Balaji, Veeraraghavan; Hryniewicz, Waleria; Sigauque, Betuel; Ravikumar, KL; Almeida, Samanta Cristine Grassi; Ochoa, Theresa J; Ho, Pak Leung; du Plessis, Mignon; Ndlangisa, Kedibone M; Cornick, Jennifer E; Kwambana-Adams, Brenda; Benisty, Rachel; Nzenze, Susan A; Madhi, Shabir A; Hawkins, Paulina A; Pollard, Andrew J; Everett, Dean B; Antonio, Martin; Dagan, Ron; Klugman, Keith P; von Gottberg, Anne; Metcalf, Benjamin J; Li, Yuan; Beall, Bernard W; McGee, Lesley; Breiman, Robert F; Aanensen, David M; Bentley, Stephen D; The Global Pneumococcal Sequencing Consortium; The Global Pneumococcal Sequencing Consortium; (2020) Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates. Microbial genomics, 6 (5). pp. 1-13. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000357

Kwambana-Adams, Brenda A; Liu, Jie; Okoi, Catherine; Mwenda, Jason M; Mohammed, Nuredin I; Tsolenyanu, Enyonam; Renner, Lorna Awo; Ansong, Daniel; Tagbo, Beckie N; Bashir, Muhammad F; +11 more... Hama, Mamadou Kourna; Sonko, Mouhamadou A; Gratz, Jean; Worwui, Archibald; Ndow, Peter; Cohen, Adam L; Serhan, Fatima; Mihigo, Richard; Antonio, Martin; Houpt, Eric; Paediatric Bacterial Meningitis Surveillance Network in West Afr; (2020) Etiology of Pediatric Meningitis in West Africa Using Molecular Methods in the Era of Conjugate Vaccines against Pneumococcus, Meningococcus, and Haemophilus influenzae Type b. The American journal of tropical medicine and hygiene, 103 (2). pp. 696-703. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.19-0566

Levine, Myron M; Nasrin, Dilruba; Acácio, Sozinho; Bassat, Quique; Powell, Helen; Tennant, Sharon M; Sow, Samba O; Sur, Dipika; Zaidi, Anita KM; Faruque, Abu SG; +31 more... Hossain, M Jahangir; Alonso, Pedro L; Breiman, Robert F; O'Reilly, Ciara E; Mintz, Eric D; Omore, Richard; Ochieng, John B; Oundo, Joseph O; Tamboura, Boubou; Sanogo, Doh; Onwuchekwa, Uma; Manna, Byomkesh; Ramamurthy, Thandavarayan; Kanungo, Suman; Ahmed, Shahnawaz; Qureshi, Shahida; Quadri, Farheen; Hossain, Anowar; Das, Sumon K; Antonio, Martin; Saha, Debasish; Mandomando, Inacio; Blackwelder, William C; Farag, Tamer; Wu, Yukun; Houpt, Eric R; Verweiij, Jaco J; Sommerfelt, Halvor; Nataro, James P; Robins-Browne, Roy M; Kotloff, Karen L; (2020) Diarrhoeal disease and subsequent risk of death in infants and children residing in low-income and middle-income countries: analysis of the GEMS case-control study and 12-month GEMS-1A follow-on study. LANCET GLOBAL HEALTH, 8 (2). e204-e214. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(19)30541-8

Lo, Stephanie W; Gladstone, Rebecca A; van Tonder, Andries J; Du Plessis, Mignon; Cornick, Jennifer E; Hawkins, Paulina A; Madhi, Shabir A; Nzenze, Susan A; Kandasamy, Rama; Ravikumar, KL; +19 more... Elmdaghri, Naima; Kwambana-Adams, Brenda; Almeida, Samanta Cristine Grassi; Skoczynska, Anna; Egorova, Ekaterina; Titov, Leonid; Saha, Samir K; Paragi, Metka; Everett, Dean B; Antonio, Martin; Klugman, Keith P; Li, Yuan; Metcalf, Benjamin J; Beall, Bernard; McGee, Lesley; Breiman, Robert F; Bentley, Stephen D; von Gottberg, Anne; Global Pneumococcal Sequencing Consortium; (2020) A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa. The Journal of antimicrobial chemotherapy, 75 (3). pp. 512-520. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkz477

Martinez-Alvarez, Melisa; Jarde, Alexander; Usuf, Effua; Brotherton, Helen; Bittaye, Mustapha; Samateh, Ahmadou L; Antonio, Martin; Vives-Tomas, Joan; D'Alessandro, Umberto; Roca, Anna; (2020) COVID-19 pandemic in west Africa. Lancet Glob Health, 8 (5). e631-e632. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(20)30123-6

Ofori-Anyinam, Boatema; Riley, Abi Janet; Jobarteh, Tijan; Gitteh, Ensa; Sarr, Binta; Faal-Jawara, Tutty Isatou; Rigouts, Leen; Senghore, Madikay; Kehinde, Aderemi; Onyejepu, Nneka; +4 more... Antonio, Martin; de Jong, Bouke C; Gehre, Florian; Meehan, Conor J; (2020) Comparative genomics shows differences in the electron transport and carbon metabolic pathways of Mycobacterium africanum relative to Mycobacterium tuberculosis and suggests an adaptation to low oxygen tension. Tuberculosis (Edinburgh, Scotland), 120. 101899-. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2020.101899

Senghore, Madikay; Diarra, Bassirou; Gehre, Florian; Otu, Jacob; Worwui, Archibald; Muhammad, Abdul Khalie; Kwambana-Adams, Brenda; Kay, Gemma L; Sanogo, Moumine; Baya, Bocar; +6 more... Orsega, Susan; Doumbia, Seydou; Diallo, Souleymane; de Jong, Bouke C; Pallen, Mark J; Antonio, Martin; (2020) Evolution of Mycobacterium tuberculosis complex lineages and their role in an emerging threat of multidrug resistant tuberculosis in Bamako, Mali. Scientific reports, 10 (1). 327-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-019-56001-0

Zaman, Syed Ma; Howie, Stephen Rc; Ochoge, Magnus; Secka, Ousman; Bah, Alasana; Baldeh, Ignatius; Sanneh, Bakary; Darboe, Saffiatou; Ceesay, Buntung; Camara, Haddy Bah; +20 more... Mawas, Fatme; Ndiaye, Malick; Hossain, Ilias; Salaudeen, Rasheed; Bojang, Kalifa; Ceesay, Samba; Sowe, Dawda; Hossain, M Jahangir; Mulholland, Kim; Kwambana-Adams, Brenda A; Okoi, Catherine; Badjie, Siaka; Ceesay, Lamin; Mwenda, Jason M; Cohen, Adam L; Agocs, Mary; Mihigo, Richard; Bottomley, Christian; Antonio, Martin; Mackenzie, Grant A; (2020) Impact of routine vaccination against Haemophilus influenzae type b in The Gambia: 20 years after its introduction. Journal of Global Health, 10 (1). 010416-. ISSN 2047-2978 DOI: https://doi.org/10.7189/jogh.10.010416

Agossou, Joseph; Ebruke, Chinelo; Noudamadjo, Alphonse; Adédémy, Julien D; Dènon, Eric Y; Bankolé, Honoré S; Dogo, Mariam A; Assogba, Rolande; Alassane, Moussa; Condé, Abdoullah; +14 more... Mohamed, Falilatou Agbeille; Kpanidja, Gérard; Gomina, Moutawakilou; Hounsou, François; Aouanou, Basile G; Okoi, Catherine; Oluwalana, Claire; Worwui, Archibald; Ndow, Peter S; Nounagnon, Jean; Mwenda, Jason M; Sossou, Rock A; Kwambana-Adams, Brenda A; Antonio, Martin; (2019) Declines in Pediatric Bacterial Meningitis in the Republic of Benin Following Introduction of Pneumococcal Conjugate Vaccine: Epidemiological and Etiological Findings, 2011-2016. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 69 (Suppl ). S140-S147. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz478

Armitage, Andrew E; Agbla, Schadrac C; Betts, Modupeh; Sise, Ebrima A; Jallow, Momodou W; Sambou, Ellen; Darboe, Bakary; Worwui, Archibald; Weinstock, George M; Antonio, Martin; +5 more... Pasricha, Sant-Rayn; Prentice, Andrew M; Drakesmith, Hal; Darboe, Momodou K; Kwambana-Adams, Brenda Anna; (2019) Rapid growth is a dominant predictor of hepcidin suppression and declining ferritin in Gambian infants. Haematologica, 104 (8). pp. 1542-1553. ISSN 0390-6078 DOI: https://doi.org/10.3324/haematol.2018.210146

Armitage, Edwin P; Senghore, Elina; Darboe, Saffiatou; Barry, Momodou; Camara, Janko; Bah, Sulayman; Marks, Michael; Cerami, Carla; Roca, Anna; Antonio, Martin; +2 more... Turner, Claire E; de Silva, Thushan I; (2019) High burden and seasonal variation of paediatric scabies and pyoderma prevalence in The Gambia: A cross-sectional study. PLoS neglected tropical diseases, 13 (10). e0007801-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0007801

Boni-Cisse, Catherine; Jarju, Sheikh; Bancroft, Rowan E; Lepri, Nicaise A; Kone, Hamidou; Kofi, N'zue; Britoh-Mlan, Alice; Zaba, Flore Sandrine; Usuf, Effua; Ndow, Peter Sylvanus; +6 more... Worwui, Archibald; Mwenda, Jason M; Biey, Joseph N; Ntsama, Bernard; Kwambana-Adams, Brenda A; Antonio, Martin; (2019) Etiology of Bacterial Meningitis Among Children <5 Years Old in Côte d'Ivoire: Findings of Hospital-based Surveillance Before and After Pneumococcal Conjugate Vaccine Introduction. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 69 (Suppl ). S114-S120. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz475

Boula, Angeline; Senghore, Madikay; Ngoh, Rose; Tassadjo, Flaubert; Fonkoua, Marie-Christine; Nzouankeu, Ariane; Njiki, Mina Kenkela; Musi, Jeanne; Bebey, Sandrine; Ngo Baleba, Madeline; +10 more... Nkembe, Angeline; Médjina, Sidonie; Ndow, Peter S; Worwui, Archibald; Kobela, Marie; Nimpa, Marceline; Mwenda, Jason M; N'diaye, Aboubacar; Kwambana-Adams, Brenda A; Antonio, Martin; (2019) Hospital-based Surveillance Provides Insights Into the Etiology of Pediatric Bacterial Meningitis in Yaoundé, Cameroon, in the Post-Vaccine Era. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 69 (Suppl ). S148-S155. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz506

Boula, Angeline; Senghore, Madikay; Ngoh, Rose; Tassadjo, Flaubert; Fonkoua, Marie-Christine; Nzouankeu, Ariane; Njiki, Mina Kenkela; Musi, Jeanne; Bebey, Sandrine; Ngo Baleba, Madeline; +10 more... Nkembe, Angeline; Médjina, Sidonie; Ndow, Peter S; Worwui, Archibald; Kobela, Marie; Nimpa, Marceline; Mwenda, Jason M; N'diaye, Aboubacar; Kwambana-Adams, Brenda A; Antonio, Martin; (2019) Hospital-based Surveillance Provides Insights Into the Etiology of Pediatric Bacterial Meningitis in Yaoundé, Cameroon, in the Post-Vaccine Era. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 69 (Supple). S148-S155. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz506

Darboe, Saffiatou; Dobreniecki, Sarah; Jarju, Sheikh; Jallow, Mamadou; Mohammed, Nuredin Ibrahim; Wathuo, Miriam; Ceesay, Buntung; Tweed, Sam; Basu Roy, Robindra; Okomo, Uduak; +9 more... Kwambana-Adams, Brenda; Antonio, Martin; Bradbury, Richard S; de Silva, Thushan I; Forrest, Karen; Roca, Anna; Lawal, Bolarinde Joseph; Nwakanma, Davis; Secka, Ousman; (2019) Prevalence of Panton-Valentine Leukocidin (PVL) and Antimicrobial Resistance in Community-Acquired Clinical Staphylococcus aureus in an Urban Gambian Hospital: A 11-Year Period Retrospective Pilot Study. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 9 (MAY). 170-. DOI: https://doi.org/10.3389/fcimb.2019.00170

Darboe, Saffiatou; Okomo, Uduak; Muhammad, Abdul-Khalie; Ceesay, Buntung; Jallow, Mamadou; Usuf, Effua; Tweed, Sam; Akpalu, Edem; Kwambana-Adams, Brenda; Kariuki, Samuel; +8 more... Antonio, Martin; Bradbury, Richard S; Forrest, Karen; de Silva, Thushan I; Lawal, Bolarinde Joseph; Nwakanma, Davis; Secka, Ousman; Roca, Anna; (2019) Community-acquired Invasive Bacterial Disease in Urban Gambia, 2005-2015: A Hospital-based Surveillance. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 69 (Suppl ). S105-S113. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz463

Gladstone, Rebecca A; Lo, Stephanie W; Lees, John A; Croucher, Nicholas J; van Tonder, Andries J; Corander, Jukka; Page, Andrew J; Marttinen, Pekka; Bentley, Leon J; Ochoa, Theresa J; +17 more... Ho, Pak Leung; du Plessis, Mignon; Cornick, Jennifer E; Kwambana-Adams, Brenda; Benisty, Rachel; Nzenze, Susan A; Madhi, Shabir A; Hawkins, Paulina A; Everett, Dean B; Antonio, Martin; Dagan, Ron; Klugman, Keith P; von Gottberg, Anne; McGee, Lesley; Breiman, Robert F; Bentley, Stephen D; Global Pneumococcal Sequencing Consortium; (2019) International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. EBioMedicine, 43. pp. 338-346. ISSN 2352-3964 DOI: https://doi.org/10.1016/j.ebiom.2019.04.021

Hossain, M Jahangir; Saha, Debasish; Antonio, Martin; Nasrin, Dilruba; Blackwelder, William C; Ikumapayi, Usman N; Mackenzie, Grant A; Adeyemi, Mitchell; Jasseh, Momodou; Adegbola, Richard A; +3 more... Roose, Anna W; Kotloff, Karen L; Levine, Myron M; (2019) Cryptosporidium infection in rural Gambian children: Epidemiology and risk factors. PLoS neglected tropical diseases, 13 (7). e0007607-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0007607

Kotloff, Karen L; Nasrin, Dilruba; Blackwelder, William C; Wu, Yukun; Farag, Tamer; Panchalingham, Sandra; Sow, Samba O; Sur, Dipika; Zaidi, Anita KM; Faruque, Abu SG; +24 more... Saha, Debasish; Alonso, Pedro L; Tamboura, Boubou; Sanogo, Doh; Onwuchekwa, Uma; Manna, Byomkesh; Ramamurthy, Thandavarayan; Kanungo, Suman; Ahmed, Shahnawaz; Qureshi, Shahida; Quadri, Farheen; Hossain, Anowar; Das, Sumon K; Antonio, Martin; Hossain, M Jahangir; Mandomando, Inacio; Acácio, Sozinho; Biswas, Kousick; Tennant, Sharon M; Verweij, Jaco J; Sommerfelt, Halvor; Nataro, James P; Robins-Browne, Roy M; Levine, Myron M; (2019) The incidence, aetiology, and adverse clinical consequences of less severe diarrhoeal episodes among infants and children residing in low-income and middle-income countries: a 12-month case-control study as a follow-on to the Global Enteric Multicenter Study (GEMS). The Lancet. Global health, 7 (5). e568-e584. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(19)30076-2

Kourna Hama, Mamadou; Khan, Dam; Laouali, Boubou; Okoi, Catherine; Yam, Abdoulaye; Haladou, Moussa; Worwui, Archibald; Ndow, Peter Sylvanus; Nse Obama, Ricardo; Mwenda, Jason M; +4 more... Biey, Joseph; Ntsama, Bernard; Kwambana-Adams, Brenda A; Antonio, Martin; (2019) Pediatric Bacterial Meningitis Surveillance in Niger: Increased Importance of Neisseria meningitidis Serogroup C, and a Decrease in Streptococcus pneumoniae Following 13-Valent Pneumococcal Conjugate Vaccine Introduction. CLINICAL INFECTIOUS DISEASES, 69 (Suppl ). S133-S139. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz598

Lo, Stephanie W; Gladstone, Rebecca A; van Tonder, Andries J; Lees, John A; du Plessis, Mignon; Benisty, Rachel; Givon-Lavi, Noga; Hawkins, Paulina A; Cornick, Jennifer E; Kwambana-Adams, Brenda; +11 more... Law, Pierra Y; Ho, Pak Leung; Antonio, Martin; Everett, Dean B; Dagan, Ron; von Gottberg, Anne; Klugman, Keith P; McGee, Lesley; Breiman, Robert F; Bentley, Stephen D; Global Pneumococcal Sequencing Consortium; (2019) Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study. The Lancet Infectious Diseases, 19 (7). pp. 759-769. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(19)30297-X

Mwenda, Jason M; Soda, Elizabeth; Weldegebriel, Goitom; Katsande, Regis; Biey, Joseph Nsiari-Muzeyi; Traore, Tieble; de Gouveia, Linda; du Plessis, Mignon; von Gottberg, Anne; Antonio, Martin; +8 more... Kwambana-Adams, Brenda; Worwui, Archibald; Gierke, Ryan; Schwartz, Stephanie; van Beneden, Chris; Cohen, Adam; Serhan, Fatima; Lessa, Fernanda C; (2019) Pediatric Bacterial Meningitis Surveillance in the World Health Organization African Region Using the Invasive Bacterial Vaccine-Preventable Disease Surveillance Network, 2011-2016. Clinical infectious diseases, 69 (Suppl ). S49-S57. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz472

Odutola, Aderonke; Ota, Martin OC; Antonio, Martin; Ogundare, Ezra O; Saidu, Yauba; Owiafe, Patrick K; Worwui, Archibald; Idoko, Olubukola T; Owolabi, Olumuyiwa; Kampmann, Beate; +7 more... Greenwood, Brian M; Alderson, Mark; Traskine, Magali; Swinnen, Kristien; Verlant, Vincent; Dobbelaere, Kurt; Borys, Dorota; (2019) Immunogenicity of pneumococcal conjugate vaccine formulations containing pneumococcal proteins, and immunogenicity and reactogenicity of co-administered routine vaccines - A phase II, randomised, observer-blind study in Gambian infants. Vaccine, 37 (19). pp. 2586-2599. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2019.03.033

Renner, Lorna Awo; Usuf, Effua; Mohammed, Nuredin Ibrahim; Ansong, Daniel; Dankwah, Thomas; Kusah, Jonas Tettey; Owusu, Sandra Kwarteng; Awunyo, Marah; Arhin, Bernard; Addo, Yvonne; +10 more... Asamoah, John; Biey, Joseph Nsiari-Muzeyi; Ndow, Peter Slyvanus; Worwui, Archibald; Senghore, Madikay; Ntsama, Bernard; Mwenda, Jason M; Diamenu, Stanley K; Adams, Brenda Kwanbana; Antonio, Martin; (2019) Hospital-based Surveillance for Pediatric Bacterial Meningitis in the Era of the 13-Valent Pneumococcal Conjugate Vaccine in Ghana. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 69 (Suppl ). S89-S96. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz464

Sanneh, Bakary; Okoi, Catherine; Grey-Johnson, Mary; Bah-Camara, Haddy; Kunta Fofana, Baba; Baldeh, Ignatius; Papa Sey, Alhagie; Labbo Bah, Mahamadou; Cham, Mamadi; Samateh, Amadou; +7 more... Usuf, Effua; Ndow, Peter Sylvanus; Senghore, Madikay; Worwui, Archibald; Mwenda, Jason M; Kwambana-Adams, Brenda; Antonio, Martin; (2019) Declining Trends of Pneumococcal Meningitis in Gambian Children After the Introduction of Pneumococcal Conjugate Vaccines. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 69 (Suppl ). S126-S132. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz505

Sonko, Mouhamadou A; Dube, Felix S; Okoi, Catherine Bi; Diop, Amadou; Thiongane, Aliou; Senghore, Madikay; Ndow, Peter; Worwui, Archibal; Faye, Papa M; Dieye, Baidy; +8 more... Ba, Idrissa D; Diallo, Aliou; Boly, Diop; Ndiaye, Ousmane; Cissé, Moussa F; Mwenda, Jason M; Kwambana-Adams, Brenda A; Antonio, Martin; (2019) Changes in the Molecular Epidemiology of Pediatric Bacterial Meningitis in Senegal After Pneumococcal Conjugate Vaccine Introduction. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 69 (Suppl ). S156-S163. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz517

Tagbo, Beckie N; Bancroft, Rowan E; Fajolu, Iretiola; Abdulkadir, Mohammed B; Bashir, Muhammad F; Okunola, Olusola P; Isiaka, Ayodeji H; Lawal, Namadi M; Edelu, Benedict O; Onyejiaka, Ngozi; +25 more... Ihuoma, Chinonyerem J; Ndu, Florence; Ozumba, Uchenna C; Udeinya, Frances; Ogunsola, Folasade; Saka, Aishat O; Fadeyi, Abayomi; Aderibigbe, Sunday A; Abdulraheem, Jimoh; Yusuf, Adamu G; Sylvanus Ndow, Peter; Ogbogu, Philomena; Kanu, Chinomnso; Emina, Velly; Makinwa, Olajumoke J; Gehre, Florian; Yusuf, Kabir; Braka, Fiona; Mwenda, Jason M; Ticha, Johnson M; Nwodo, Dorothy; Worwui, Archibald; Biey, Joseph N; Kwambana-Adams, Brenda A; Antonio, Martin; (2019) Pediatric Bacterial Meningitis Surveillance in Nigeria From 2010 to 2016, Prior to and During the Phased Introduction of the 10-Valent Pneumococcal Conjugate Vaccine. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 69 (Suppl ). S81-S88. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz474

Tsolenyanu, Enyonam; Bancroft, Rowan E; Sesay, Abdul K; Senghore, Madikay; Fiawoo, Mawouto; Akolly, Djatougbe; Godonou, Mawussi A; Tsogbale, Novissi; Tigossou, Segla D; Tientcheu, Leopold; +10 more... Dagnra, Anoumou; Atakouma, Yawo; Sylvanus Ndow, Peter; Worwui, Archibald; Landoh, Dadja E; Mwenda, Jason M; Biey, Joseph N; Ntsama, Bernard; Kwambana-Adams, Brenda A; Antonio, Martin; (2019) Etiology of Pediatric Bacterial Meningitis Pre- and Post-PCV13 Introduction Among Children Under 5 Years Old in Lomé, Togo. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 69 (Suppl ). S97-S104. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz473

Vidal, Roberto M; Muhsen, Khitam; Tennant, Sharon M; Svennerholm, Ann-Mari; Sow, Samba O; Sur, Dipika; Zaidi, Anita KM; Faruque, Abu SG; Saha, Debasish; Adegbola, Richard; +38 more... Hossain, M Jahangir; Alonso, Pedro L; Breiman, Robert F; Bassat, Quique; Tamboura, Boubou; Sanogo, Doh; Onwuchekwa, Uma; Manna, Byomkesh; Ramamurthy, Thandavarayan; Kanungo, Suman; Ahmed, Shahnawaz; Qureshi, Shahida; Quadri, Farheen; Hossain, Anowar; Das, Sumon K; Antonio, Martin; Mandomando, Inacio; Nhampossa, Tacilta; Acácio, Sozinho; Omore, Richard; Ochieng, John B; Oundo, Joseph O; Mintz, Eric D; O'Reilly, Ciara E; Berkeley, Lynette Y; Livio, Sofie; Panchalingam, Sandra; Nasrin, Dilruba; Farag, Tamer H; Wu, Yukun; Sommerfelt, Halvor; Robins-Browne, Roy M; Del Canto, Felipe; Hazen, Tracy H; Rasko, David A; Kotloff, Karen L; Nataro, James P; Levine, Myron M; (2019) Colonization factors among enterotoxigenic Escherichia coli isolates from children with moderate-to-severe diarrhea and from matched controls in the Global Enteric Multicenter Study (GEMS). PLOS NEGLECTED TROPICAL DISEASES, 13 (1). e0007037-. ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0007037

de Jong, Bouke C; Gaye, Badou M; Luyten, Jeroen; van Buitenen, Bart; André, Emmanuel; Meehan, Conor J; O'Siochain, Cian; Tomsu, Kristyna; Urbain, Jérôme; Grietens, Koen Peeters; +8 more... Njue, Maureen; Pinxten, Wim; Gehre, Florian; Nyan, Ousman; Buvé, Anne; Roca, Anna; Ravinetto, Raffaella; Antonio, Martin; (2019) Ethical Considerations for Movement Mapping to Identify Disease Transmission Hotspots. Emerging infectious diseases, 25 (7). E1-E6. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2507.181421

van Tonder, Andries J; Gladstone, Rebecca A; Lo, Stephanie W; Nahm, Moon H; du Plessis, Mignon; Cornick, Jennifer; Kwambana-Adams, Brenda; Madhi, Shabir A; Hawkins, Paulina A; Benisty, Rachel; +9 more... Dagan, Ron; Everett, Dean; Antonio, Martin; Klugman, Keith P; von Gottberg, Anne; Breiman, Robert F; McGee, Lesley; Bentley, Stephen D; The Global Pneumococcal Sequencing Consortium; (2019) Putative novel cps loci in a large global collection of pneumococci. Microbial Genomics, 5 (7). DOI: https://doi.org/10.1099/mgen.0.000274

Azarian, Taj; Mitchell, Patrick K; Georgieva, Maria; Thompson, Claudette M; Ghouila, Amel; Pollard, Andrew J; von Gottberg, Anne; du Plessis, Mignon; Antonio, Martin; Kwambana-Adams, Brenda A; +17 more... Clarke, Stuart C; Everett, Dean; Cornick, Jennifer; Sadowy, Ewa; Hryniewicz, Waleria; Skoczynska, Anna; Moïsi, Jennifer C; McGee, Lesley; Beall, Bernard; Metcalf, Benjamin J; Breiman, Robert F; Ho, PL; Reid, Raymond; O'Brien, Katherine L; Gladstone, Rebecca A; Bentley, Stephen D; Hanage, William P; (2018) Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci. PLoS pathogens, 14 (11). e1007438-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1007438

Ebruke, CN; (2018) Molecular epidemiological and pathogenesis studies of Streptococcus pneumoniae serotype 1 strains from West Africa. MPhil thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04647232

Forson, Audrey; Kwara, Awewura; Kudzawu, Samuel; Omari, Michael; Otu, Jacob; Gehre, Florian; de Jong, Bouke; Antonio, Martin; (2018) A cross-sectional study of tuberculosis drug resistance among previously treated patients in a tertiary hospital in Accra, Ghana: public health implications of standardized regimens. BMC infectious diseases, 18 (1). 149-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-018-3053-5

Hasan, Alvira Z; Saha, Senjuti; Saha, Samir K; Sahakyan, Gayane; Grigoryan, Svetlana; Mwenda, Jason M; Antonio, Martin; Knoll, Maria D; Serhan, Fatima; Cohen, Adam L; +1 more... Pneumococcal and rotavirus surveillance case study group; (2018) Using pneumococcal and rotavirus surveillance in vaccine decision-making: A series of case studies in Bangladesh, Armenia and the Gambia. Vaccine, 36 (32 Pt ). pp. 4939-4943. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.06.001

Kariuki, Samuel; Keddy, Karen H; Antonio, Martin; Okeke, Iruka N; (2018) Antimicrobial resistance surveillance in Africa: Successes, gaps and a roadmap for the future. AFRICAN JOURNAL OF LABORATORY MEDICINE, 7 (2). 924-. ISSN 2225-2002 DOI: https://doi.org/10.4102/ajlm.v7i2.924

Kwambana-Adams, Brenda A; Amaza, Rahab C; Okoi, Catherine; Rabiu, Murtala; Worwui, Archibald; Foster-Nyarko, Ebenezer; Ebruke, Bernard; Sesay, Abdul K; Senghore, Madikay; Umar, Abdullahi S; +31 more... Usman, Rabi; Atiku, Adamu; Abdullahi, Garba; Buhari, Yahaya; Sani, Rabiu; Bako, Husaini U; Abdullahi, Bashir; Yarima, Alliyu I; Sikiru, Badaru; Moses, Aderinola Olaolu; Popoola, Michael O; Ekeng, Eme; Olayinka, Adebola; Mba, Nwando; Kankia, Adamu; Mamadu, Ibrahim N; Okudo, Ifeanyi; Stephen, Mary; Ronveaux, Olivier; Busuttil, Jason; Mwenda, Jason M; Abdulaziz, Mohammed; Gummi, Sulaiman A; Adedeji, Adebayo; Bita, Andre; Omar, Linda; Djingarey, Mamoudou Harouna; Alemu, Wondimagegnehu; D'Alessandro, Umberto; Ihekweazu, Chikwe; Antonio, Martin; (2018) Meningococcus serogroup C clonal complex ST-10217 outbreak in Zamfara State, Northern Nigeria. Scientific reports, 8 (1). 14194-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-32475-2

Lo, Stephanie W; Gladstone, Rebecca A; van Tonder, Andries J; Hawkins, Paulina A; Kwambana-Adams, Brenda; Cornick, Jennifer E; Madhi, Shabir A; Nzenze, Susan A; du Plessis, Mignon; Kandasamy, Rama; +13 more... Carter, Philip E; Eser, Özgen Köseoglu; Ho, Pak Leung; Elmdaghri, Naima; Shakoor, Sadia; Clarke, Stuart C; Antonio, Martin; Everett, Dean B; von Gottberg, Anne; Klugman, Keith P; McGee, Lesley; Breiman, Robert F; Bentley, Stephen D; (2018) Global Distribution of Invasive Serotype 35D Streptococcus pneumoniae Isolates following Introduction of 13-Valent Pneumococcal Conjugate Vaccine. Journal of clinical microbiology, 56 (7). e00228-e00218. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.00228-18

Morter, Richard; Adetifa, Ifedayo; Antonio, Martin; Touray, Fatima; de Jong, Bouke C; Gower, Charlotte M; Gehre, Florian; (2018) Examining human paragonimiasis as a differential diagnosis to tuberculosis in The Gambia. BMC research notes, 11 (1). 31-. ISSN 1756-0500 DOI: https://doi.org/10.1186/s13104-018-3134-y

Osei-Wusu, Stephen; Amo Omari, Michael; Asante-Poku, Adwoa; Darko Otchere, Isaac; Asare, Prince; Forson, Audrey; Otu, Jacob; Antonio, Martin; Yeboah-Manu, Dorothy; (2018) Second-line anti-tuberculosis drug resistance testing in Ghana identifies the first extensively drug-resistant tuberculosis case. Infection and Drug Resistance, Volume. pp. 239-246. DOI: https://doi.org/10.2147/idr.s152720

Otchere, Isaac Darko; Coscollá, Mireia; Sánchez-Busó, Leonor; Asante-Poku, Adwoa; Brites, Daniela; Loiseau, Chloe; Meehan, Conor; Osei-Wusu, Stephen; Forson, Audrey; Laryea, Clement; +18 more... Yahayah, Abdallah Iddrisu; Baddoo, Akosua; Ansa, Gloria Akosua; Aboagye, Samuel Yaw; Asare, Prince; Borrell, Sonia; Gehre, Florian; Beckert, Patrick; Kohl, Thomas A; N'dira, Sanoussi; Beisel, Christian; Antonio, Martin; Niemann, Stefan; de Jong, Bouke C; Parkhill, Julian; Harris, Simon R; Gagneux, Sebastien; Yeboah-Manu, Dorothy; (2018) Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches. Scientific Reports, 8 (1). 11269-. DOI: https://doi.org/10.1038/s41598-018-29620-2

Phelan, Jody; de Sessions, Paola Florez; Tientcheu, Leopold; Perdigao, Joao; Machado, Diana; Hasan, Rumina; Hasan, Zahra; Bergval, Indra L; Anthony, Richard; McNerney, Ruth; +6 more... Antonio, Martin; Portugal, Isabel; Viveiros, Miguel; Campino, Susana; Hibberd, Martin L; Clark, Taane G; (2018) Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally. Scientific reports, 8 (1). 160-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-18188-y

Senghore, M; Diarra, B; Gehre, F; Otu, J; Worwui, A; Muhammad, AK; Sanogo, M; Baya, B; Orsega, S; Doumbia, S; +4 more... Diallo, S; de Jong, BC; Pallen, MJ; Antonio, M; (2018) Evolution of virulent genotypes and an emerging threat of multidrug resistant tuberculosis in Bamako, Mali. International Journal of Infectious Diseases, 73. pp. 65-66. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2018.04.3573

Svardal, Hannes; Jasinska, Anna J; Apetrei, Cristian; Coppola, Giovanni; Huang, Yu; Schmitt, Christopher A; Jacquelin, Beatrice; Ramensky, Vasily; Müller-Trutwin, Michaela; Antonio, Martin; +8 more... Weinstock, George; Grobler, J Paul; Dewar, Ken; Wilson, Richard K; Turner, Trudy R; Warren, Wesley C; Freimer, Nelson B; Nordborg, Magnus; (2018) Publisher Correction: Ancient hybridization and strong adaptation to viruses across African vervet monkey populations. Nature genetics, 50 (11). 1617-. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-018-0124-x

Baggett, Henry C; Watson, Nora L; Deloria Knoll, Maria; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; +26 more... Murdoch, David R; Scott, J Anthony G; Thea, Donald M; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Duncan, Julie; Ebruke, Bernard E; Goswami, Doli; Higdon, Melissa M; Karron, Ruth A; Moore, David P; Morpeth, Susan C; Mulindwa, Justin M; Park, Daniel E; Paveenkittiporn, Wantana; Piralam, Barameht; Prosperi, Christine; Sow, Samba O; Tapia, Milagritos D; Zaman, Khalequ; Zeger, Scott L; O'Brien, Katherine L; PERCH Study Group; (2017) Density of Upper Respiratory Colonization With Streptococcus pneumoniae and Its Role in the Diagnosis of Pneumococcal Pneumonia Among Children Aged <5 Years in the PERCH Study. Clinical infectious diseases, 64 (suppl_). S317-S327. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix100 Full text not available from this repository.

Bojang, Abdoulie; Kendall, Lindsay; Usuf, Effua; Egere, Uzochukwu; Mulwa, Sarah; Antonio, Martin; Greenwood, Brian; Hill, Philip C; Roca, Anna; (2017) Prevalence and risk factors for Staphylococcus aureus nasopharyngeal carriage during a PCV trial. BMC infectious diseases, 17 (1). 588-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2685-1

Bricio-Moreno, Laura; Ebruke, Chinelo; Chaguza, Chrispin; Cornick, Jennifer; Kwambana-Adams, Brenda; Yang, Marie; Mackenzie, Grant; Wren, Brendan W; Everett, Dean; Antonio, Martin; +1 more... Kadioglu, Aras; (2017) Comparative Genomic Analysis and In Vivo Modeling of Streptococcus pneumoniae ST3081 and ST618 Isolates Reveal Key Genetic and Phenotypic Differences Contributing to Clonal Replacement of Serotype 1 in The Gambia. The Journal of infectious diseases, 216 (10). pp. 1318-1327. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jix472

Cornick, Jennifer E; Tastan Bishop, Özlem; Yalcin, Feyruz; Kiran, Anmol M; Kumwenda, Benjamin; Chaguza, Chrispin; Govindpershad, Shanil; Ousmane, Sani; Senghore, Madikay; du Plessis, Mignon; +15 more... Pluschke, Gerd; Ebruke, Chinelo; McGee, Lesley; Sigaùque, Beutel; Collard, Jean-Marc; Bentley, Stephen D; Kadioglu, Aras; Antonio, Martin; von Gottberg, Anne; French, Neil; Klugman, Keith P; Heyderman, Robert S; Alderson, Mark; Everett, Dean B; PAGe consortium; (2017) The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1. Vaccine, 35 (6). pp. 972-980. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.12.037

Deloria Knoll, Maria; Morpeth, Susan C; Scott, J Anthony G; Watson, Nora L; Park, Daniel E; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; +28 more... Kotloff, Karen L; Levine, Orin S; O'Brien, Katherine L; Thea, Donald M; Ahmed, Dilruba; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; Chipeta, James; Deluca, Andrea N; Dione, Michel; Driscoll, Amanda J; Higdon, Melissa M; Jatapai, Anchalee; Karron, Ruth A; Mazumder, Razib; Moore, David P; Mwansa, James; Nyongesa, Sammy; Prosperi, Christine; Seidenberg, Phil; Siludjai, Duangkamon; Sow, Samba O; Tamboura, Boubou; Zeger, Scott L; Murdoch, David R; Madhi, Shabir A; PERCH Study Group; (2017) Evaluation of Pneumococcal Load in Blood by Polymerase Chain Reaction for the Diagnosis of Pneumococcal Pneumonia in Young Children in the PERCH Study. Clinical infectious diseases, 64 (suppl_). S357-S367. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix149

Driscoll, Amanda J; Karron, Ruth A; Morpeth, Susan C; Bhat, Niranjan; Levine, Orin S; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; +33 more... Knoll, Maria Deloria; Kotloff, Karen L; Madhi, Shabir A; Scott, J Anthony G; Thea, Donald M; Adrian, Peter V; Ahmed, Dilruba; Alam, Muntasir; Anderson, Trevor P; Antonio, Martin; Baillie, Vicky L; Dione, Michel; Endtz, Hubert P; Gitahi, Caroline; Karani, Angela; Kwenda, Geoffrey; Maiga, Abdoul Aziz; McClellan, Jessica; Mitchell, Joanne L; Morailane, Palesa; Mugo, Daisy; Mwaba, John; Mwansa, James; Mwarumba, Salim; Nyongesa, Sammy; Panchalingam, Sandra; Rahman, Mustafizur; Sawatwong, Pongpun; Tamboura, Boubou; Toure, Aliou; Whistler, Toni; O'Brien, Katherine L; Murdoch, David R; (2017) Standardization of Laboratory Methods for the PERCH Study. Clinical infectious diseases, 64 (suppl_). S245-S252. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix081

Feikin, Daniel R; Fu, Wei; Park, Daniel E; Shi, Qiyuan; Higdon, Melissa M; Baggett, Henry C; Brooks, W Abdullah; Deloria Knoll, Maria; Hammitt, Laura L; Howie, Stephen RC; +28 more... Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; Scott, J Anthony G; Thea, Donald M; Adrian, Peter V; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Ebruke, Bernard E; Goswami, Doli; Karron, Ruth A; Li, Mengying; Morpeth, Susan C; Mwaba, John; Mwansa, James; Prosperi, Christine; Sawatwong, Pongpun; Sow, Samba O; Tapia, Milagritos D; Whistler, Toni; Zaman, Khalequ; Zeger, Scott L; O' Brien, Katherine L; Murdoch, David R; PERCH Study Group; (2017) Is Higher Viral Load in the Upper Respiratory Tract Associated With Severe Pneumonia? Findings From the PERCH Study. Clinical infectious diseases, 64 (suppl_). S337-S346. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix148

Foster-Nyarko, Ebenezer; Kwambana, Brenda; Ceesay, Fatima; Jawneh, Kaddijatou; Darboe, Saffiatou; Mulwa, Sarah N; Ceesay, Buntung; Secka, Ousman O; Adetifa, Ifedayo; Antonio, Martin; (2017) Incidence of macrolide-lincosamide-streptogramin B resistance amongst beta-haemolytic streptococci in The Gambia. BMC research notes, 10 (1). 106-. ISSN 1756-0500 DOI: https://doi.org/10.1186/s13104-017-2427-x

Ikumapayi, Usman N; Boisen, Nadia; Hossain, Mohammad J; Betts, Modupeh; Lamin, Modou; Saha, Debasish; Kwambana-Adams, Brenda; Dione, Michel; Adegbola, Richard A; Roca, Anna; +2 more... Nataro, James P; Antonio, Martin; (2017) Identification of Subsets of Enteroaggregative Escherichia coli Associated with Diarrheal Disease among Under 5 Years of Age Children from Rural Gambia. The American journal of tropical medicine and hygiene, 97 (4). pp. 997-1004. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.16-0705

Kwambana-Adams, Brenda; Hanson, Blake; Worwui, Archibald; Agbla, Schadrac; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Ebruke, Chinelo; Egere, Uzochukwu; Zhou, Yanjiao; Ndukum, Maze; +5 more... Sodergren, Erica; Barer, Michael; Adegbola, Richard; Weinstock, George; Antonio, Martin; (2017) Rapid replacement by non-vaccine pneumococcal serotypes may mitigate the impact of the pneumococcal conjugate vaccine on nasopharyngeal bacterial ecology. Scientific reports, 7 (1). 8127-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-08717-0

Le Doare, Kirsty; Faal, Amadou; Jaiteh, Mustapha; Sarfo, Francess; Taylor, Stephen; Warburton, Fiona; Humphries, Holly; Birt, Jessica; Jarju, Sheikh; Darboe, Saffiatou; +6 more... Clarke, Edward; Antonio, Martin; Foster-Nyarko, Ebenezer; Heath, Paul T; Gorringe, Andrew; Kampmann, Beate; (2017) Association between functional antibody against Group B Streptococcus and maternal and infant colonization in a Gambian cohort. VACCINE, 35 (22). pp. 2970-2978. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2017.04.013

Mackenzie, Grant A; Hill, Philip C; Sahito, Shah M; Jeffries, David J; Hossain, Ilias; Bottomley, Christian; Uchendu, Uchendu; Ameh, David; Ndiaye, Malick; Osuorah, Chidebereh D; +38 more... Adeyemi, Oyedeji; Pathirana, Jayani; Olatunji, Yekini; Abatan, Bade; Ahameefula, Ebirim; Muhammad, Bilquees S; Fombah, Augustin E; Saha, Debasish; Mackenzie, Roslyn; Plumb, Ian; Akano, Aliu; Ebruke, Bernard; Ideh, Readon C; Kuti, Bankole; Githua, Peter; Olutunde, Emmanuel; Ofordile, Ogochukwu; Green, Edward; Usuf, Effua; Badji, Henry; Ikumapayi, Usman NA; Manjang, Ahmad; Salaudeen, Rasheed; Nsekpong, E David; Jarju, Sheikh; Antonio, Martin; Sambou, Sana; Ceesay, Lamin; Lowe-Jallow, Yamundow; Sowe, Dawda; Jasseh, Momodou; Mulholland, Kim; Knoll, Maria; Levine, Orin S; Howie, Stephen R; Adegbola, Richard A; Greenwood, Brian M; Corrah, Tumani; (2017) Impact of the introduction of pneumococcal conjugate vaccination on pneumonia in The Gambia: population-based surveillance and case-control studies. The Lancet infectious diseases, 17 (9). pp. 965-973. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(17)30321-3

Mendy, Awa L; Agbla, Schadrac C; Odutola, Aderonke A; Antonio, Martin; Greenwood, Brian M; Sutherland, Jayne S; Ota, Martin OC; (2017) Kinetics of antibodies against pneumococcal proteins and their relationship to nasopharyngeal carriage in the first two months of life. PloS one, 12 (10). e0185824-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0185824

Morpeth, Susan C; Deloria Knoll, Maria; Scott, J Anthony G; Park, Daniel E; Watson, Nora L; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; +29 more... Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; O'Brien, Katherine L; Thea, Donald M; Adrian, Peter V; Ahmed, Dilruba; Antonio, Martin; Bunthi, Charatdao; DeLuca, Andrea N; Driscoll, Amanda J; Githua, Louis Peter; Higdon, Melissa M; Kahn, Geoff; Karani, Angela; Karron, Ruth A; Kwenda, Geoffrey; Makprasert, Sirirat; Mazumder, Razib; Moore, David P; Mwansa, James; Nyongesa, Sammy; Prosperi, Christine; Sow, Samba O; Tamboura, Boubou; Whistler, Toni; Zeger, Scott L; Murdoch, David R; PERCH Study Group; (2017) Detection of Pneumococcal DNA in Blood by Polymerase Chain Reaction for Diagnosing Pneumococcal Pneumonia in Young Children From Low- and Middle-Income Countries. Clinical infectious diseases, 64 (suppl_). S347-S356. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix145

Nnadi, Chimeremma; Oladejo, John; Yennan, Sebastian; Ogunleye, Adesola; Agbai, Chidinma; Bakare, Lawal; Abdulaziz, Mohammed; Mohammed, Amina; Stephens, Mary; Sumaili, Kyadindi; +12 more... Ronveaux, Olivier; Maguire, Helen; Karch, Debra; Dalhat, Mahmood; Antonio, Martin; Bita, Andre; Okudo, Ifeanyi; Nguku, Patrick; Novak, Ryan; Bolu, Omotayo; Shuaib, Faisal; Ihekweazu, Chikwe; (2017) Large Outbreak of Neisseria meningitidis Serogroup C - Nigeria, December 2016-June 2017. MMWR. Morbidity and mortality weekly report, 66 (49). pp. 1352-1356. ISSN 0149-2195 DOI: https://doi.org/10.15585/mmwr.mm6649a3

Odutola, Aderonke; Ota, Martin OC; Antonio, Martin; Ogundare, Ezra O; Saidu, Yauba; Foster-Nyarko, Ebenezer; Owiafe, Patrick K; Ceesay, Fatima; Worwui, Archibald; Idoko, Olubukola T; +14 more... Owolabi, Olumuyiwa; Bojang, Abdoulie; Jarju, Sheikh; Drammeh, Isatou; Kampmann, Beate; Greenwood, Brian M; Alderson, Mark; Traskine, Magali; Devos, Nathalie; Schoonbroodt, Sonia; Swinnen, Kristien; Verlant, Vincent; Dobbelaere, Kurt; Borys, Dorota; (2017) Efficacy of a novel, protein-based pneumococcal vaccine against nasopharyngeal carriage of Streptococcus pneumoniae in infants: A phase 2, randomized, controlled, observer-blind study. Vaccine, 35 (19). pp. 2531-2542. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2017.03.071

Ofori-Anyinam, Boatema; Dolganov, Gregory; Van, Tran; Davis, J Lucian; Walter, Nicholas D; Garcia, Benjamin J; Voskuil, Marty; Fissette, Kristina; Diels, Maren; Driesen, Michèle; +8 more... Meehan, Conor J; Yeboah-Manu, Dorothy; Coscolla, Mireia; Gagneux, Sebastien; Antonio, Martin; Schoolnik, Gary; Gehre, Florian; de Jong, Bouke C; (2017) Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum. Tuberculosis (Edinburgh, Scotland), 104. pp. 58-64. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2017.03.001

Okoi, Catherine; Anderson, Suzanne TB; Antonio, Martin; Mulwa, Sarah N; Gehre, Florian; Adetifa, Ifedayo MO; (2017) Non-tuberculous Mycobacteria isolated from Pulmonary samples in sub-Saharan Africa - A Systematic Review and Meta Analyses. Scientific reports, 7 (1). 12002-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-12175-z

Park, Daniel E; Baggett, Henry C; Howie, Stephen RC; Shi, Qiyuan; Watson, Nora L; Brooks, W Abdullah; Deloria Knoll, Maria; Hammitt, Laura L; Kotloff, Karen L; Levine, Orin S; +28 more... Madhi, Shabir A; Murdoch, David R; O'Brien, Katherine L; Scott, J Anthony G; Thea, Donald M; Ahmed, Dilruba; Antonio, Martin; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Fu, Wei; Gitahi, Caroline W; Olutunde, Emmanuel; Higdon, Melissa M; Hossain, Lokman; Karron, Ruth A; Maiga, Abdoul Aziz; Maloney, Susan A; Moore, David P; Morpeth, Susan C; Mwaba, John; Mwenechanya, Musaku; Prosperi, Christine; Sylla, Mamadou; Thamthitiwat, Somsak; Zeger, Scott L; Feikin, Daniel R; PERCH Study Group; (2017) Colonization Density of the Upper Respiratory Tract as a Predictor of Pneumonia-Haemophilus influenzae, Moraxella catarrhalis, Staphylococcus aureus, and Pneumocystis jirovecii. Clinical infectious diseases, 64 (suppl_). S328-S336. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix104

Senghore, Madikay; Otu, Jacob; Witney, Adam; Gehre, Florian; Doughty, Emma L; Kay, Gemma L; Butcher, Phillip; Salako, Kayode; Kehinde, Aderemi; Onyejepu, Nneka; +5 more... Idigbe, Emmanuel; Corrah, Tumani; de Jong, Bouke; Pallen, Mark J; Antonio, Martin; (2017) Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria. PloS one, 12 (9). e0184510-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0184510

Shi, Ting; McAllister, David A; O'Brien, Katherine L; Simoes, Eric AF; Madhi, Shabir A; Gessner, Bradford D; Polack, Fernando P; Balsells, Evelyn; Acacio, Sozinho; Aguayo, Claudia; +113 more... Alassani, Issifou; Ali, Asad; Antonio, Martin; Awasthi, Shally; Awori, Juliet O; Azziz-Baumgartner, Eduardo; Baggett, Henry C; Baillie, Vicky L; Balmaseda, Angel; Barahona, Alfredo; Basnet, Sudha; Bassat, Quique; Basualdo, Wilma; Bigogo, Godfrey; Bont, Louis; Breiman, Robert F; Brooks, W Abdullah; Broor, Shobha; Bruce, Nigel; Bruden, Dana; Buchy, Philippe; Campbell, Stuart; Carosone-Link, Phyllis; Chadha, Mandeep; Chipeta, James; Chou, Monidarin; Clara, Wilfrido; Cohen, Cheryl; de Cuellar, Elizabeth; Dang, Duc-Anh; Dash-Yandag, Budragchaagiin; Deloria-Knoll, Maria; Dherani, Mukesh; Eap, Tekchheng; Ebruke, Bernard E; Echavarria, Marcela; de Freitas Lázaro Emediato, Carla Cecília; Fasce, Rodrigo A; Feikin, Daniel R; Feng, Luzhao; Gentile, Angela; Gordon, Aubree; Goswami, Doli; Goyet, Sophie; Groome, Michelle; Halasa, Natasha; Hirve, Siddhivinayak; Homaira, Nusrat; Howie, Stephen RC; Jara, Jorge; Jroundi, Imane; Kartasasmita, Cissy B; Khuri-Bulos, Najwa; Kotloff, Karen L; Krishnan, Anand; Libster, Romina; Lopez, Olga; Lucero, Marilla G; Lucion, Florencia; Lupisan, Socorro P; Marcone, Debora N; McCracken, John P; Mejia, Mario; Moisi, Jennifer C; Montgomery, Joel M; Moore, David P; Moraleda, Cinta; Moyes, Jocelyn; Munywoki, Patrick; Mutyara, Kuswandewi; Nicol, Mark P; Nokes, D James; Nymadawa, Pagbajabyn; da Costa Oliveira, Maria Tereza; Oshitani, Histoshi; Pandey, Nitin; Paranhos-Baccalà, Gláucia; Phillips, Lia N; Picot, Valentina Sanchez; Rahman, Mustafizur; Rakoto-Andrianarivelo, Mala; Rasmussen, Zeba A; Rath, Barbara A; Robinson, Annick; Romero, Candice; Russomando, Graciela; Salimi, Vahid; Sawatwong, Pongpun; Scheltema, Nienke; Schweiger, Brunhilde; Scott, J Anthony G; Seidenberg, Phil; Shen, Kunling; Singleton, Rosalyn; Sotomayor, Viviana; Strand, Tor A; Sutanto, Agustinus; Sylla, Mariam; Tapia, Milagritos D; Thamthitiwat, Somsak; Thomas, Elizabeth D; Tokarz, Rafal; Turner, Claudia; Venter, Marietjie; Waicharoen, Sunthareeya; Wang, Jianwei; Watthanaworawit, Wanitda; Yoshida, Lay-Myint; Yu, Hongjie; Zar, Heather J; Campbell, Harry; Nair, Harish; RSV Global Epidemiology Network; (2017) Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young children in 2015: a systematic review and modelling study. Lancet, 390 (10098). pp. 946-958. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(17)30938-8

Svardal, Hannes; Jasinska, Anna J; Apetrei, Cristian; Coppola, Giovanni; Huang, Yu; Schmitt, Christopher A; Jacquelin, Beatrice; Ramensky, Vasily; Müller-Trutwin, Michaela; Antonio, Martin; +8 more... Weinstock, George; Grobler, J Paul; Dewar, Ken; Wilson, Richard K; Turner, Trudy R; Warren, Wesley C; Freimer, Nelson B; Nordborg, Magnus; (2017) Ancient hybridization and strong adaptation to viruses across African vervet monkey populations. Nature genetics, 49 (12). pp. 1705-1713. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3980

Thea, Donald M; Seidenberg, Phil; Park, Daniel E; Mwananyanda, Lawrence; Fu, Wei; Shi, Qiyuan; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Howie, Stephen RC; +29 more... Knoll, Maria Deloria; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; O'Brien, Katherine L; Scott, J Anthony G; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Higdon, Melissa M; Hossain, Lokman; Jahan, Yasmin; Karron, Ruth A; Kazungu, Sidi; Li, Mengying; Moore, David P; Morpeth, Susan C; Ofordile, Ogochukwu; Prosperi, Christine; Sangwichian, Ornuma; Sawatwong, Pongpun; Sylla, Mamadou; Tapia, Milagritos D; Zeger, Scott L; Murdoch, David R; Hammitt, Laura L; PERCH Study Group; (2017) Limited Utility of Polymerase Chain Reaction in Induced Sputum Specimens for Determining the Causes of Childhood Pneumonia in Resource-Poor Settings: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study. Clinical infectious diseases, 64 (suppl_). S289-S300. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix098

Adetifa, Ifedayo Mo; Kendall, Lindsay; Bashorun, Adedapo; Linda, Christopher; Omoleke, Semeeh; Jeffries, David; Maane, Rahmatulai; Alorse, Beatrice Dei; Alorse, William Dei; Okoi, Catherine Bi; +6 more... Mlaga, Kodjovi D; Kinteh, Ma Ansu; Donkor, Simon; de Jong, Bouke C; Antonio, Martin; d'Alessandro, Umberto; (2016) A tuberculosis nationwide prevalence survey in Gambia, 2012. Bulletin of the World Health Organization, 94 (6). pp. 433-441. ISSN 0042-9686 DOI: https://doi.org/10.2471/BLT.14.151670

Ashu, Eta E; Jarju, Sheikh; Dione, Michel; Mackenzie, Grant; Ikumapayi, Usman N; Manjang, Ahmed; Azuine, Romuladus; Antonio, Martin; (2016) Population structure, epidemiology and antibiotic resistance patterns of Streptococcus pneumoniae serotype 5: prior to PCV-13 vaccine introduction in Eastern Gambia. BMC infectious diseases, 16 (1). 33-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-016-1370-0

Chaguza, Chrispin; Cornick, Jennifer E; Harris, Simon R; Andam, Cheryl P; Bricio-Moreno, Laura; Yang, Marie; Yalcin, Feyruz; Ousmane, Sani; Govindpersad, Shanil; Senghore, Madikay; +20 more... Ebruke, Chinelo; Du Plessis, Mignon; Kiran, Anmol M; Pluschke, Gerd; Sigauque, Betuel; McGee, Lesley; Klugman, Keith P; Turner, Paul; Corander, Jukka; Parkhill, Julian; Collard, Jean-Marc; Antonio, Martin; von Gottberg, Anne; Heyderman, Robert S; French, Neil; Kadioglu, Aras; Hanage, William P; Everett, Dean B; Bentley, Stephen D; PAGe Consortium; (2016) Understanding pneumococcal serotype 1 biology through population genomic analysis. BMC infectious diseases, 16 (1). 649-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-016-1987-z

Diarra, B; Goita, D; Tounkara, S; Sanogo, M; Baya, B; Togo, ACG; Maiga, M; Sarro, YS; Kone, A; Kone, B; +14 more... M'Baye, O; Coulibaly, N; Kassambara, H; Cisse, A; Belson, M; Polis, MA; Otu, J; Gehre, F; Antonio, M; Dao, S; Siddiqui, S; Murphy, RL; de Jong, BC; Diallo, S; (2016) Tuberculosis drug resistance in Bamako, Mali, from 2006 to 2014. BMC infectious diseases, 16 (1). 714-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-016-2060-7

Ebruke, Chinelo; Dione, Michel M; Walter, Brigitte; Worwui, Archibald; Adegbola, Richard A; Roca, Anna; Antonio, Martin; (2016) High genetic diversity of Staphylococcus aureus strains colonising the nasopharynx of Gambian villagers before widespread use of pneumococcal conjugate vaccines. BMC Microbiology, 16 (1). 38-. DOI: https://doi.org/10.1186/s12866-016-0661-3

Foster-Nyarko, Ebenezer; Kwambana, Brenda; Aderonke, Odutola; Ceesay, Fatima; Jarju, Sheikh; Bojang, Abdoulie; McLellan, Jessica; Jafali, James; Kampmann, Beate; Ota, Martin O; +2 more... Adetifa, Ifedayo; Antonio, Martin; (2016) Associations between nasopharyngeal carriage of Group B Streptococcus and other respiratory pathogens during early infancy. BMC microbiology, 16 (1). 97-. ISSN 1471-2180 DOI: https://doi.org/10.1186/s12866-016-0714-7

Gehre, Florian; Kumar, Samrat; Kendall, Lindsay; Ejo, Mebrat; Secka, Oumie; Ofori-Anyinam, Boatema; Abatih, Emmanuel; Antonio, Martin; Berkvens, Dirk; de Jong, Bouke C; (2016) A Mycobacterial Perspective on Tuberculosis in West Africa: Significant Geographical Variation of M. africanum and Other M. tuberculosis Complex Lineages. PLoS neglected tropical diseases, 10 (3). e0004408-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004408

Gehre, Florian; Otu, Jacob; Kendall, Lindsay; Forson, Audrey; Kwara, Awewura; Kudzawu, Samuel; Kehinde, Aderemi O; Adebiyi, Oludele; Salako, Kayode; Baldeh, Ignatius; +34 more... Jallow, Aisha; Jallow, Mamadou; Dagnra, Anoumou; Dissé, Kodjo; Kadanga, Essosimna A; Idigbe, Emmanuel Oni; Onubogu, Catherine; Onyejepu, Nneka; Gaye-Diallo, Aissatou; Ba-Diallo, Awa; Rabna, Paulo; Mane, Morto; Sanogo, Moumine; Diarra, Bassirou; Dezemon, Zingue; Sanou, Adama; Senghore, Madikay; Kwambana-Adams, Brenda A; Demba, Edward; Faal-Jawara, Tutty; Kumar, Samrat; Tientcheu, Leopold D; Jallow, Adama; Ceesay, Samba; Adetifa, Ifedayo; Jaye, Assan; Pallen, Mark J; D'Alessandro, Umberto; Kampmann, Beate; Adegbola, Richard A; Mboup, Souleymane; Corrah, Tumani; de Jong, Bouke C; Antonio, Martin; (2016) The emerging threat of pre-extensively drug-resistant tuberculosis in West Africa: preparing for large-scale tuberculosis research and drug resistance surveillance. BMC medicine, 14 (1). 160-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-016-0704-5

Jobarteh, Tijan; Otu, Jacob; Gitteh, Ensa; Mendy, Francis; Faal-Jawara, Tutty I; Ofori-Anyinam, Boatema; Ayorinde, Abigail; Secka, Ousman; Antonio, Martin; Gehre, Florian; (2016) Evaluation of the Kudoh method for mycobacterial culture: Gambia experience. International journal of mycobacteriology, 5 Supp. S166-. ISSN 2212-5531 DOI: https://doi.org/10.1016/j.ijmyco.2016.09.049

Kwambana-Adams, Brenda Anna; Asiedu-Bekoe, Franklin; Sarkodie, Badu; Afreh, Osei Kuffour; Kuma, George Khumalo; Owusu-Okyere, Godfred; Foster-Nyarko, Ebenezer; Ohene, Sally-Ann; Okot, Charles; Worwui, Archibald Kwame; +17 more... Okoi, Catherine; Senghore, Madikay; Otu, Jacob Kweku; Ebruke, Chinelo; Bannerman, Richard; Amponsa-Achiano, Kwame; Opare, David; Kay, Gemma; Letsa, Timothy; Kaluwa, Owen; Appiah-Denkyira, Ebenezer; Bampoe, Victor; Zaman, Syed MA; Pallen, Mark J; D'Alessandro, Umberto; Mwenda, Jason M; Antonio, Martin; (2016) An outbreak of pneumococcal meningitis among older children (≥5 years) and adults after the implementation of an infant vaccination programme with the 13-valent pneumococcal conjugate vaccine in Ghana. BMC infectious diseases, 16 (1). 575-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-016-1914-3

Liu, Jie; Platts-Mills, James A; Juma, Jane; Kabir, Furqan; Nkeze, Joseph; Okoi, Catherine; Operario, Darwin J; Uddin, Jashim; Ahmed, Shahnawaz; Alonso, Pedro L; +40 more... Antonio, Martin; Becker, Stephen M; Blackwelder, William C; Breiman, Robert F; Faruque, Abu SG; Fields, Barry; Gratz, Jean; Haque, Rashidul; Hossain, Anowar; Hossain, M Jahangir; Jarju, Sheikh; Qamar, Farah; Iqbal, Najeeha Talat; Kwambana, Brenda; Mandomando, Inacio; McMurry, Timothy L; Ochieng, Caroline; Ochieng, John B; Ochieng, Melvin; Onyango, Clayton; Panchalingam, Sandra; Kalam, Adil; Aziz, Fatima; Qureshi, Shahida; Ramamurthy, Thandavarayan; Roberts, James H; Saha, Debasish; Sow, Samba O; Stroup, Suzanne E; Sur, Dipika; Tamboura, Boubou; Taniuchi, Mami; Tennant, Sharon M; Toema, Deanna; Wu, Yukun; Zaidi, Anita; Nataro, James P; Kotloff, Karen L; Levine, Myron M; Houpt, Eric R; (2016) Use of quantitative molecular diagnostic methods to identify causes of diarrhoea in children: a reanalysis of the GEMS case-control study. LANCET, 388 (10051). pp. 1291-1301. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(16)31529-X

Mackenzie, Grant A; Hill, Philip C; Jeffries, David J; Hossain, Ilias; Uchendu, Uchendu; Ameh, David; Ndiaye, Malick; Adeyemi, Oyedeji; Pathirana, Jayani; Olatunji, Yekini; +32 more... Abatan, Bade; Muhammad, Bilquees S; Fombah, Augustin E; Saha, Debasish; Plumb, Ian; Akano, Aliu; Ebruke, Bernard; Ideh, Readon C; Kuti, Bankole; Githua, Peter; Olutunde, Emmanuel; Ofordile, Ogochukwu; Green, Edward; Usuf, Effua; Badji, Henry; Ikumapayi, Usman NA; Manjang, Ahmad; Salaudeen, Rasheed; Nsekpong, E David; Jarju, Sheikh; Antonio, Martin; Sambou, Sana; Ceesay, Lamin; Lowe-Jallow, Yamundow; Jasseh, Momodou; Mulholland, Kim; Knoll, Maria; Levine, Orin S; Howie, Stephen R; Adegbola, Richard A; Greenwood, Brian M; Corrah, Tumani; (2016) Effect of the introduction of pneumococcal conjugate vaccination on invasive pneumococcal disease in The Gambia: a population-based surveillance study. The Lancet infectious diseases, 16 (6). pp. 703-711. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(16)00054-2

Manigart, Olivier; Okeakpu, Jacinta; Odutola, Aderonke; Jarju, Sheikh; Foster-Nyarko, Ebenezer; Diallo, Kanny; Roca, Anna; Kampmann, Beate; D'Alessandro, Umberto; Sow, Samba; +6 more... Antonio, Martin; Maiden, Martin J; Borrow, Ray; Stuart, James M; Trotter, Caroline L; Greenwood, Brian M; (2016) Alternative Molecular Methods for Improved Detection of Meningococcal Carriage and Measurement of Bacterial Density. Journal of clinical microbiology, 54 (11). pp. 2743-2748. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01428-16

Odutola, A; Ota, MO; Ogundare, EO; Antonio, M; Owiafe, P; Worwui, A; Greenwood, B; Alderson, M; Traskine, M; Verlant, V; +2 more... Dobbelaere, K; Borys, D; (2016) Reactogenicity, safety and immunogenicity of a protein-based pneumococcal vaccine in Gambian children aged 2-4 years: A phase II randomized study. Human vaccines & immunotherapeutics, 12 (2). pp. 393-402. ISSN 2164-5515 DOI: https://doi.org/10.1080/21645515.2015.1111496

Ofori-Anyinam, Boatema; Kanuteh, Fatoumatta; Agbla, Schadrac C; Adetifa, Ifedayo; Okoi, Catherine; Dolganov, Gregory; Schoolnik, Gary; Secka, Ousman; Antonio, Martin; de Jong, Bouke C; +1 more... Gehre, Florian; (2016) Impact of the Mycobaterium africanum West Africa 2 Lineage on TB Diagnostics in West Africa: Decreased Sensitivity of Rapid Identification Tests in The Gambia. PLoS neglected tropical diseases, 10 (7). e0004801-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004801

Qamar, Farah Naz; Nisar, Muhammad Imran; Quadri, Farheen; Shakoor, Sadia; Sow, Samba O; Nasrin, Dilruba; Blackwelder, William C; Wu, Yukun; Farag, Tamer; Panchalingham, Sandra; +20 more... Sur, Dipika; Qureshi, Shahida; Faruque, Abu SG; Saha, Debasish; Alonso, Pedro L; Breiman, Robert F; Bassat, Quique; Tamboura, Boubou; Ramamurthy, Thandavarayan; Kanungo, Suman; Ahmed, Shahnawaz; Hossain, Anowar; Das, Sumon K; Antonio, Martin; Hossain, M Jahangir; Mandomando, Inacio; Tennant, Sharon M; Kotloff, Karen L; Levine, Myron M; Zaidi, Anita KM; (2016) Aeromonas-Associated Diarrhea in Children Under 5 Years: The GEMS Experience. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 95 (4). pp. 774-780. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.16-0321

Senghore, Madikay; Bayliss, Sion C; Kwambana-Adams, Brenda A; Foster-Nyarko, Ebenezer; Manneh, Jainaba; Dione, Michel; Badji, Henry; Ebruke, Chinelo; Doughty, Emma L; Thorpe, Harry A; +9 more... Jasinska, Anna J; Schmitt, Christopher A; Cramer, Jennifer D; Turner, Trudy R; Weinstock, George; Freimer, Nelson B; Pallen, Mark J; Feil, Edward J; Antonio, Martin; (2016) Transmission of Staphylococcus aureus from Humans to Green Monkeys in The Gambia as Revealed by Whole-Genome Sequencing. Applied and environmental microbiology, 82 (19). pp. 5910-5917. ISSN 0099-2240 DOI: https://doi.org/10.1128/AEM.01496-16

Sow, Samba O; Muhsen, Khitam; Nasrin, Dilruba; Blackwelder, William C; Wu, Yukun; Farag, Tamer H; Panchalingam, Sandra; Sur, Dipika; Zaidi, Anita KM; Faruque, Abu SG; +39 more... Saha, Debasish; Adegbola, Richard; Alonso, Pedro L; Breiman, Robert F; Bassat, Quique; Tamboura, Boubou; Sanogo, Doh; Onwuchekwa, Uma; Manna, Byomkesh; Ramamurthy, Thandavarayan; Kanungo, Suman; Ahmed, Shahnawaz; Qureshi, Shahida; Quadri, Farheen; Hossain, Anowar; Das, Sumon K; Antonio, Martin; Hossain, M Jahangir; Mandomando, Inacio; Nhampossa, Tacilta; Acácio, Sozinho; Omore, Richard; Oundo, Joseph O; Ochieng, John B; Mintz, Eric D; O'Reilly, Ciara E; Berkeley, Lynette Y; Livio, Sofie; Tennant, Sharon M; Sommerfelt, Halvor; Nataro, James P; Ziv-Baran, Tomer; Robins-Browne, Roy M; Mishcherkin, Vladimir; Zhang, Jixian; Liu, Jie; Houpt, Eric R; Kotloff, Karen L; Levine, Myron M; (2016) The Burden of Cryptosporidium Diarrheal Disease among Children < 24 Months of Age in Moderate/High Mortality Regions of Sub-Saharan Africa and South Asia, Utilizing Data from the Global Enteric Multicenter Study (GEMS). PLOS NEGLECTED TROPICAL DISEASES, 10 (5). e0004729-. ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0004729

Tientcheu, Leopold D; Bell, Andrew; Secka, Oumie; Ayorinde, Abigail; Otu, Jacob; Garton, Nathalie J; Sutherland, Jayne S; Ota, Martin O; Antonio, Martin; Dockrell, HM; +2 more... Kampmann, Beate; Barer, Michael R; (2016) Association of slow recovery of Mycobacterium africanum-infected patients posttreatment with high content of Persister-Like bacilli in pretreatment sputum. International journal of mycobacteriology, 5 Supp. S99-S100. ISSN 2212-5531 DOI: https://doi.org/10.1016/j.ijmyco.2016.09.033

Tientcheu, Leopold D; Haks, Mariëlle C; Agbla, Schadrac C; Sutherland, Jayne S; Adetifa, Ifedayo M; Donkor, Simon; Quinten, Edwin; Daramy, Mohammed; Antonio, Martin; Kampmann, Beate; +3 more... Ottenhoff, Tom HM; Dockrell, Hazel M; Ota, Martin O; (2016) Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. PLoS neglected tropical diseases, 10 (5). e0004701-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004701

Bojang, Abdoulie; Jafali, James; Egere, Uzochukwu E; Hill, Phillip C; Antonio, Martin; Jeffries, David; Greenwood, Brian M; Roca, Anna; (2015) Seasonality of Pneumococcal Nasopharyngeal Carriage in Rural Gambia Determined within the Context of a Cluster Randomized Pneumococcal Vaccine Trial. PloS one, 10 (7). e0129649-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0129649

Bottomley, Christian; Bojang, Abdoulie; Smith, Peter G; Darboe, Ousainou; Antonio, Martin; Foster-Nyarko, Ebenezer; Kampmann, Beate; Greenwood, Brian; D'Alessandro, Umberto; Roca, Anna; (2015) The impact of childhood vaccines on bacterial carriage in the nasopharynx: a longitudinal study. Emerging themes in epidemiology, 12 (1). 1-. ISSN 1742-7622 DOI: https://doi.org/10.1186/s12982-014-0022-3

Donnenberg, Michael S; Hazen, Tracy H; Farag, Tamer H; Panchalingam, Sandra; Antonio, Martin; Hossain, Anowar; Mandomando, Inacio; Ochieng, John Benjamin; Ramamurthy, Thandavarayan; Tamboura, Boubou; +5 more... Zaidi, Anita; Levine, Myron M; Kotloff, Karen; Rasko, David A; Nataro, James P; (2015) Bacterial Factors Associated with Lethal Outcome of Enteropathogenic Escherichia coli Infection: Genomic Case-Control Studies. PLoS neglected tropical diseases, 9 (5). e0003791-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0003791

Ebruke, Chinelo; Roca, Anna; Egere, Uzochukwu; Darboe, Ousainou; Hill, Philip C; Greenwood, Brian; Wren, Brendan W; Adegbola, Richard A; Antonio, Martin; (2015) Temporal changes in nasopharyngeal carriage of Streptococcus pneumoniae serotype 1 genotypes in healthy Gambians before and after the 7-valent pneumococcal conjugate vaccine. PeerJ, 3 (3). e903-. ISSN 2167-8359 DOI: https://doi.org/10.7717/peerj.903

Kwambana-Adams, Brenda; Darboe, Saffiatou; Nabwera, Helen; Foster-Nyarko, Ebenezer; Ikumapayi, Usman N; Secka, Ousman; Betts, Modupeh; Bradbury, Richard; Wegmüller, Rita; Lawal, Bolarinde; +7 more... Saha, Debasish; Hossain, M Jahangir; Prentice, Andrew M; Kampmann, Beate; Anderson, Suzanne; Dalessandro, Umberto; Antonio, Martin; (2015) Salmonella Infections in The Gambia, 2005-2015. Clinical infectious diseases, 61 Sup (suppl ). S354-S362. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/civ781 Full text not available from this repository.

Lindsay, Brianna; Oundo, Joe; Hossain, M Anowar; Antonio, Martin; Tamboura, Boubou; Walker, Alan W; Paulson, Joseph N; Parkhill, Julian; Omore, Richard; Faruque, Abu SG; +18 more... Das, Suman Kumar; Ikumapayi, Usman N; Adeyemi, Mitchell; Sanogo, Doh; Saha, Debasish; Sow, Samba; Farag, Tamer H; Nasrin, Dilruba; Li, Shan; Panchalingam, Sandra; Levine, Myron M; Kotloff, Karen; Magder, Laurence S; Hungerford, Laura; Sommerfelt, Halvor; Pop, Mihai; Nataro, James P; Stine, O Colin; (2015) Microbiota that affect risk for shigellosis in children in low-income countries. Emerging infectious diseases, 21 (2). pp. 242-250. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2101.140795

Mackenzie, Grant A; Ikumapayi, Usman NA; Scott, Susana; Idoko, Olubukola; Odutola, Aderonke; Ndiaye, Malick; Sahito, Shah M; Osuorah, Chidiebereh D; Manjang, Ahmed; Jarju, Sheikh; +14 more... Bojang, Abdoulie; Roca, Anna; Secka, Ousman; Zaman, Akram; Ceesay, Lamin; Lowe-Jallow, Yamundow; Sambou, Sana; Jasseh, Momodou; Antonio, Martin; Greenwood, Brian; Kampmann, Beate; Mulholland, Kim; Corrah, Tumani; Howie, Stephen RC; (2015) Increased disease due to Haemophilus influenzae type b: population-based surveillance in eastern Gambia, 2008-2013. The Pediatric infectious disease journal, 34 (5). e107-e112. ISSN 0891-3668 DOI: https://doi.org/10.1097/INF.0000000000000645 Full text not available from this repository.

Meyer, Caroline T; Bauer, Irma K; Antonio, Martin; Adeyemi, Mitchell; Saha, Debasish; Oundo, Joseph O; Ochieng, John B; Omore, Richard; Stine, O Colin; Wang, David; +1 more... Holtz, Lori R; (2015) Prevalence of classic, MLB-clade and VA-clade Astroviruses in Kenya and The Gambia. VIROLOGY JOURNAL, 12 (1). 78-. ISSN 1743-422X DOI: https://doi.org/10.1186/s12985-015-0299-z

Roca, Anna; Bojang, Abdoulie; Bottomley, Christian; Gladstone, Rebecca A; Adetifa, Jane U; Egere, Uzochukwu; Burr, Sarah; Antonio, Martin; Bentley, Stephen; Kampmann, Beate; +1 more... Pneumo13 Study Group; (2015) Effect on nasopharyngeal pneumococcal carriage of replacing PCV7 with PCV13 in the Expanded Programme of Immunization in The Gambia. Vaccine, 33 (51). pp. 7144-7151. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2015.11.012

Usuf, Effua; Badji, Henry; Bojang, Abdoulie; Jarju, Sheikh; Ikumapayi, Usman Nurudeen; Antonio, Martin; Mackenzie, Grant; Bottomley, Christian; (2015) Pneumococcal carriage in rural Gambia prior to the introduction of pneumococcal conjugate vaccine: a population-based survey. Tropical medicine & international health, 20 (7). pp. 871-879. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12505 Full text not available from this repository.

Gehre, Florian; Ejo, Mebrat; Fissette, Kristina; de Rijk, Pim; Uwizeye, Cécile; Nduwamahoro, Elie; Goovaerts, Odin; Affolabi, Dissou; Gninafon, Martin; Lingoupou, Fanny M; +11 more... Barry, Mamadou Dian; Sow, Oumou; Merle, Corinne; Olliaro, Piero; Ba, Fatoumata; Sarr, Marie; Piubello, Alberto; Noeske, Juergen; Antonio, Martin; Rigouts, Leen; de Jong, Bouke C; (2014) Shifts in Mycobacterial Populations and Emerging Drug-Resistance in West and Central Africa. PloS one, 9 (12). e110393-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0110393

Howie, Stephen RC; Morris, Gerard AJ; Tokarz, Rafal; Ebruke, Bernard E; Machuka, Eunice M; Ideh, Readon C; Chimah, Osaretin; Secka, Ousman; Townend, John; Dione, Michel; +11 more... Oluwalana, Claire; Njie, Malick; Jallow, Mariatou; Hill, Philip C; Antonio, Martin; Greenwood, Brian; Briese, Thomas; Mulholland, Kim; Corrah, Tumani; Lipkin, W Ian; Adegbola, Richard A; (2014) Etiology of severe childhood pneumonia in the Gambia, West Africa, determined by conventional and molecular microbiological analyses of lung and pleural aspirate samples. Clinical infectious diseases, 59 (5). pp. 682-685. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciu384

Livio, Sofie; Strockbine, Nancy A; Panchalingam, Sandra; Tennant, Sharon M; Barry, Eileen M; Marohn, Mark E; Antonio, Martin; Hossain, Anowar; Mandomando, Inacio; Ochieng, John B; +26 more... Oundo, Joseph O; Qureshi, Shahida; Ramamurthy, Thandavarayan; Tamboura, Boubou; Adegbola, Richard A; Hossain, Mohammed Jahangir; Saha, Debasish; Sen, Sunil; Faruque, Abu Syed Golam; Alonso, Pedro L; Breiman, Robert F; Zaidi, Anita KM; Sur, Dipika; Sow, Samba O; Berkeley, Lynette Y; O'Reilly, Ciara E; Mintz, Eric D; Biswas, Kousick; Cohen, Dani; Farag, Tamer H; Nasrin, Dilruba; Wu, Yukun; Blackwelder, William C; Kotloff, Karen L; Nataro, James P; Levine, Myron M; (2014) Shigella isolates from the global enteric multicenter study inform vaccine development. CLINICAL INFECTIOUS DISEASES, 59 (7). pp. 933-941. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciu468

Pop, Mihai; Walker, Alan W; Paulson, Joseph; Lindsay, Brianna; Antonio, Martin; Hossain, M Anowar; Oundo, Joseph; Tamboura, Boubou; Mai, Volker; Astrovskaya, Irina; +25 more... Corrada Bravo, Hector; Rance, Richard; Stares, Mark; Levine, Myron M; Panchalingam, Sandra; Kotloff, Karen; Ikumapayi, Usman N; Ebruke, Chinelo; Adeyemi, Mitchell; Ahmed, Dilruba; Ahmed, Firoz; Alam, Meer Taifur; Amin, Ruhul; Siddiqui, Sabbir; Ochieng, John B; Ouma, Emmanuel; Juma, Jane; Mailu, Euince; Omore, Richard; Morris, J Glenn; Breiman, Robert F; Saha, Debasish; Parkhill, Julian; Nataro, James P; Stine, O Colin; (2014) Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition. Genome biology, 15 (6). R76-. ISSN 1474-7596 DOI: https://doi.org/10.1186/gb-2014-15-6-r76

Secka, Ousman; Moodley, Yoshan; Antonio, Martin; Berg, Douglas E; Tapgun, Mary; Walton, Robert; Worwui, Archibald; Thomas, Vivat; Corrah, Tumani; Thomas, Julian E; +1 more... Adegbola, Richard A; (2014) Population genetic analyses of Helicobacter pylori isolates from Gambian adults and children. PloS one, 9 (10). e109466-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0109466

Tientcheu, Leopold D; Sutherland, Jayne S; de Jong, Bouke C; Kampmann, Beate; Jafali, James; Adetifa, Ifedayo M; Antonio, Martin; Dockrell, Hazel M; Ota, Martin O; (2014) Differences in T-cell responses between Mycobacterium tuberculosis and Mycobacterium africanum-infected patients. European journal of immunology, 44 (5). pp. 1387-1398. ISSN 0014-2980 DOI: https://doi.org/10.1002/eji.201343956 Full text not available from this repository.

Williams, Caroline ML; Cheah, Eddy SG; Malkin, Joanne; Patel, Hemu; Otu, Jacob; Mlaga, Kodjovi; Sutherland, Jayne S; Antonio, Martin; Perera, Nelun; Woltmann, Gerrit; +3 more... Haldar, Pranabashis; Garton, Natalie J; Barer, Michael R; (2014) Face mask sampling for the detection of Mycobacterium tuberculosis in expelled aerosols. PLOS ONE, 9 (8). e104921-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0104921

Donkor, Eric S; Adegbola, Richard A; Wren, Brendan W; Antonio, Martin; (2013) Population biology of Streptococcus pneumoniae in West Africa: multilocus sequence typing of serotypes that exhibit different predisposition to invasive disease and carriage. PloS one, 8 (1). e53925-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0053925

Gehre, Florian; Antonio, Martin; Otu, Jacob K; Sallah, Neneh; Secka, Oumie; Faal, Tutty; Owiafe, Patrick; Sutherland, Jayne S; Adetifa, Ifedayo M; Ota, Martin O; +3 more... Kampmann, Beate; Corrah, Tumani; de Jong, Bouke C; (2013) Immunogenic Mycobacterium africanum strains associated with ongoing transmission in The Gambia. EMERGING INFECTIOUS DISEASES, 19 (10). pp. 1598-1604. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid1910.121023

Gehre, Florian; Otu, Jacob; DeRiemer, Kathryn; de Sessions, Paola Florez; Hibberd, Martin L; Mulders, Wim; Corrah, Tumani; de Jong, Bouke C; Antonio, Martin; (2013) Deciphering the growth behaviour of Mycobacterium africanum. PLoS neglected tropical diseases, 7 (5). e2220-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0002220

Odutola, Aderonke; Antonio, Martin; Owolabi, Olumuyiwa; Bojang, Abdoulie; Foster-Nyarko, Ebenezer; Donkor, Simon; Adetifa, Ifedayo; Taylor, Sylvia; Bottomley, Christian; Greenwood, Brian; +1 more... Ota, Martin; (2013) Comparison of the prevalence of common bacterial pathogens in the oropharynx and nasopharynx of gambian infants. PLOS ONE, 8 (9). e75558-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0075558

Prentice, Andrew M; Nabwera, Helen; Kwambana, Brenda; Antonio, Martin; Moore, Sophie E; (2013) Microbes and the malnourished child. Science translational medicine, 5 (180). 180fs11-. ISSN 1946-6234 DOI: https://doi.org/10.1126/scitranslmed.3006212 Full text not available from this repository.

Roca, Anna; Dione, Michel M; Bojang, Abdoulie; Townend, John; Egere, Uzochukwu; Darboe, Ousainou; Howie, Stephen RC; Hill, Philip C; Adegbola, Richard A; Greenwood, Brian M; +1 more... Antonio, Martin; (2013) Nasopharyngeal carriage of pneumococci four years after community-wide vaccination with PCV-7 in The Gambia: long-term evaluation of a cluster randomized trial. PLOS ONE, 8 (9). e72198-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0072198

Satzke, Catherine; Turner, Paul; Virolainen-Julkunen, Anni; Adrian, Peter V; Antonio, Martin; Hare, Kim M; Henao-Restrepo, Ana Maria; Leach, Amanda J; Klugman, Keith P; Porter, Barbara D; +5 more... Sá-Leão, Raquel; Scott, J Anthony; Nohynek, Hanna; O'Brien, Katherine L; WHO Pneumococcal Carriage Working Group; (2013) Standard method for detecting upper respiratory carriage of Streptococcus pneumoniae: updated recommendations from the World Health Organization Pneumococcal Carriage Working Group. Vaccine, 32 (1). pp. 165-179. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2013.08.062

Adetifa, Ifedayo MO; Antonio, Martin; Okoromah, Christy AN; Ebruke, Chinelo; Inem, Victor; Nsekpong, David; Bojang, Abdoulie; Adegbola, Richard A; (2012) Pre-vaccination nasopharyngeal pneumococcal carriage in a Nigerian population: epidemiology and population biology. PLOS ONE, 7 (1). e30548-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0030548

Bentley, Stephen D; Comas, Iñaki; Bryant, Josephine M; Walker, Danielle; Smith, Noel H; Harris, Simon R; Thurston, Scott; Gagneux, Sebastien; Wood, Jonathan; Antonio, Martin; +5 more... Quail, Michael A; Gehre, Florian; Adegbola, Richard A; Parkhill, Julian; de Jong, Bouke C; (2012) The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex. PLoS neglected tropical diseases, 6 (2). e1552-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0001552

Donkor, Eric S; Stabler, Richard A; Hinds, Jason; Adegbola, Richard A; Antonio, Martin; Wren, Brendan W; (2012) Comparative phylogenomics of Streptococcus pneumoniae isolated from invasive disease and nasopharyngeal carriage from West Africans. BMC genomics, 13 (1). 569-. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-13-569

Lindsay, Steven W; Lindsay, Thomas C; Duprez, Jessica; Hall, Martin JR; Kwambana, Brenda A; Jawara, Musa; Nurudeen, Ikumapayi U; Sallah, Neneh; Wyatt, Nigel; D'Alessandro, Umberto; +2 more... Pinder, Margaret; Antonio, Martin; (2012) Chrysomya putoria, a putative vector of diarrheal diseases. PLoS neglected tropical diseases, 6 (11). e1895-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0001895

Panchalingam, Sandra; Antonio, Martin; Hossain, Anowar; Mandomando, Inacio; Ochieng, Ben; Oundo, Joseph; Ramamurthy, T; Tamboura, Boubou; Zaidi, Anita KM; Petri, William; +15 more... Houpt, Eric; Murray, Patrick; Prado, Valeria; Vidal, Roberto; Steele, Duncan; Strockbine, Nancy; Sansonetti, Philippe; Glass, Roger I; Robins-Browne, Roy M; Tauschek, Marija; Svennerholm, Ann-Marie; Berkeley, Lynette Y; Kotloff, Karen; Levine, Myron M; Nataro, James P; (2012) Diagnostic microbiologic methods in the GEMS-1 case/control study. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 55 Sup (Suppl ). S294-S302. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cis754

Roca, A; Bottomley, C; Hill, PC; Bojang, A; Egere, U; Antonio, M; Darboe, O; Greenwood, BM; Adegbola, RA; (2012) Effect of age and vaccination with a pneumococcal conjugate vaccine on the density of pneumococcal nasopharyngeal carriage. Clinical infectious diseases, 55 (6). pp. 816-824. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cis554

Sutherland, Jayne S; Garba, Danlani; Fombah, Augustin E; Mendy-Gomez, Awa; Mendy, Francis S; Antonio, Martin; Townend, John; Ideh, Readon C; Corrah, Tumani; Ota, Martin OC; (2012) Highly accurate diagnosis of pleural tuberculosis by immunological analysis of the pleural effusion. PLOS ONE, 7 (1). e30324-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0030324

Dione, Michel M; Ikumapayi, Usman; Saha, Debasish; Mohammed, Nuredin Ibrahim; Adegbola, Richard A; Geerts, Stanny; Ieven, Margareta; Antonio, Martin; (2011) Antimicrobial resistance and virulence genes of non-typhoidal Salmonella isolates in The Gambia and Senegal. The Journal of Infection in Developing Countries, 5 (11). pp. 765-775. ISSN 2036-6590 DOI: https://doi.org/10.3855/jidc.1512

Donkor, ES; Bishop, CJ; Gould, KA; Hinds, J; Antonio, M; Wren, B; Hanage, WP; (2011) High levels of recombination among Streptococcus pneumoniae isolates from the Gambia. mBio, 2 (3). e00040-e00011. ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.00040-11

Kwambana, Brenda A; Barer, Michael R; Bottomley, Christian; Adegbola, Richard A; Antonio, Martin; (2011) Early acquisition and high nasopharyngeal co-colonisation by Streptococcus pneumoniae and three respiratory pathogens amongst Gambian new-borns and infants. BMC infectious diseases, 11 (1). 175-. ISSN 1471-2334 DOI: https://doi.org/10.1186/1471-2334-11-175

Kwambana, Brenda A; Mohammed, Nuredin I; Jeffries, David; Barer, Mike; Adegbola, Richard A; Antonio, Martin; (2011) Differential effects of frozen storage on the molecular detection of bacterial taxa that inhabit the nasopharynx. BMC clinical pathology, 11 (1). 2-. ISSN 1472-6890 DOI: https://doi.org/10.1186/1472-6890-11-2

Roca, Anna; Hill, Philip C; Townend, John; Egere, Uzo; Antonio, Martin; Bojang, Abdoulie; Akisanya, Abiodun; Litchfield, Teresa; Nsekpong, David E; Oluwalana, Claire; +3 more... Howie, Stephen RC; Greenwood, Brian; Adegbola, Richard A; (2011) Effects of community-wide vaccination with PCV-7 on pneumococcal nasopharyngeal carriage in the Gambia: a cluster-randomized trial. PLoS medicine, 8 (10). e1001107-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1001107

Secka, Ousman; Antonio, Martin; Berg, Douglas E; Tapgun, Mary; Bottomley, Christian; Thomas, Vivat; Walton, Robert; Corrah, Tumani; Thomas, Julian E; Adegbola, Richard A; (2011) Mixed infection with cagA positive and cagA negative strains of Helicobacter pylori lowers disease burden in The Gambia. PloS one, 6 (11). e27954-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0027954

Secka, Ousman; Antonio, Martin; Tapgun, Mary; Berg, Douglas E; Bottomley, Christian; Thomas, Vivat; Walton, Robert; Corrah, Tumani; Adegbola, Richard A; Thomas, Julian E; (2011) PCR-based genotyping of Helicobacter pylori of Gambian children and adults directly from biopsy specimens and bacterial cultures. GUT PATHOGENS, 3 (1). 5-. ISSN 1757-4749 DOI: https://doi.org/10.1186/1757-4749-3-5

Hill, Philip C; Townend, John; Antonio, Martin; Akisanya, Biodun; Ebruke, Chinelo; Lahai, George; Greenwood, Brian M; Adegbola, Richard A; (2010) Transmission of Streptococcus pneumoniae in rural Gambian villages: a longitudinal study. Clinical infectious diseases, 50 (11). pp. 1468-1476. ISSN 1058-4838 DOI: https://doi.org/10.1086/652443 Full text not available from this repository.

Antonio, Martin; Hakeem, Ishrat; Sankareh, Kawsu; Cheung, Yin Bun; Adegbola, Richard A; (2009) Evaluation of sequential multiplex PCR for direct detection of multiple serotypes of Streptococcus pneumoniae from nasopharyngeal secretions. Journal of medical microbiology, 58 (Pt 3). pp. 296-302. ISSN 0022-2615 DOI: https://doi.org/10.1099/jmm.0.006031-0 Full text not available from this repository.

Antonio, Martin; Dada-Adegbola, Hannah; Biney, Ekow; Awine, Tim; O'Callaghan, John; Pfluger, Valentin; Enwere, Godwin; Okoko, Brown; Oluwalana, Claire; Vaughan, Adeola; +5 more... Zaman, Syed Ma; Pluschke, Gerd; Greenwood, Brian M; Cutts, Felicity; Adegbola, Richard A; (2008) Molecular epidemiology of pneumococci obtained from Gambian children aged 2-29 months with invasive pneumococcal disease during a trial of a 9-valent pneumococcal conjugate vaccine. BMC infectious diseases, 8 (1). 81-. ISSN 1471-2334 DOI: https://doi.org/10.1186/1471-2334-8-81

Antonio, Martin; Hakeem, Ishrat; Awine, Timothy; Secka, Ousman; Sankareh, Kawsu; Nsekpong, David; Lahai, George; Akisanya, Abiodun; Egere, Uzochukwu; Enwere, Godwin; +6 more... Zaman, Syed MA; Hill, Philip C; Corrah, Tumani; Cutts, Felicity; Greenwood, Brian M; Adegbola, Richard A; (2008) Seasonality and outbreak of a predominant Streptococcus pneumoniae serotype 1 clone from The Gambia: expansion of ST217 hypervirulent clonal complex in West Africa. BMC microbiology, 8 (1). 198-. ISSN 1471-2180 DOI: https://doi.org/10.1186/1471-2180-8-198

de Jong, Bouke C; Hill, Philip C; Aiken, Alex; Awine, Timothy; Antonio, Martin; Adetifa, Ifedayo M; Jackson-Sillah, Dolly J; Fox, Annette; Deriemer, Kathryn; Gagneux, Sebastien; +5 more... Borgdorff, Martien W; McAdam, Keith PWJ; Corrah, Tumani; Small, Peter M; Adegbola, Richard A; (2008) Progression to active tuberculosis, but not transmission, varies by Mycobacterium tuberculosis lineage in The Gambia. The Journal of infectious diseases, 198 (7). pp. 1037-1043. ISSN 0022-1899 DOI: https://doi.org/10.1086/591504 Full text not available from this repository.

Ikumapayi, Usman N; Antonio, Martin; Sonne-Hansen, Jacob; Biney, Ekow; Enwere, Godwin; Okoko, Brown; Oluwalana, Claire; Vaughan, Adeola; Zaman, Syed MA; Greenwood, Brian M; +2 more... Cutts, Felicity T; Adegbola, Richard A; (2007) Molecular epidemiology of community-acquired invasive non-typhoidal Salmonella among children aged 2 29 months in rural Gambia and discovery of a new serovar, Salmonella enterica Dingiri. Journal of medical microbiology, 56 (Pt 11). pp. 1479-1484. ISSN 0022-2615 DOI: https://doi.org/10.1099/jmm.0.47416-0 Full text not available from this repository.