Bhaskaran, Krishnan; Rentsch, Christopher T; MacKenna, Brian; Schultze, Anna; Mehrkar, Amir; Bates, Chris J; Eggo, Rosalind M; Morton, Caroline E; Bacon, Sebastian CJ; Inglesby, Peter; +15 more... Doughlas, Ian J; Walker, Alex J; McDonald, Helen; Cockburn, Jonathan; Williamson, Elizabeth J; Evans, David; Forbes, Harriet J; Curtis, Helen J; Hulme, William J; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; (2021) HIV infection and COVID-19 death: a population-based cohort analysis of UK primary care data and linked national death registrations within the OpenSAFELY platform. LANCET HIV, 8 (1). e24-e32. ISSN 2352-3018 DOI: https://doi.org/10.1016/S2352-3018(20)30305-2

Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; +15 more... Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; CMMID COVID-19 Working Group; COVID-19 Genomics UK (COG-UK) Consortium; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John; (2021) Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. Science (New York, N.Y.). eabg3055-eabg3055. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.abg3055

Enria, Luisa; Waterlow, Naomi; Rogers, Nina Trivedy; Brindle, Hannah; Lal, Sham; Eggo, Rosalind M; Lees, Shelley; Roberts, Chrissy H; (2021) Trust and transparency in times of crisis: Results from an online survey during the first wave (April 2020) of the COVID-19 epidemic in the UK. PLoS One, 16 (2). e0239247-. DOI: https://doi.org/10.1371/journal.pone.0239247

Forbes, Harriet; Morton, Caroline E; Bacon, Seb; McDonald, Helen I; Minassian, Caroline; Brown, Jeremy P; Rentsch, Christopher T; Mathur, Rohini; Schultze, Anna; DeVito, Nicholas J; +25 more... MacKenna, Brian; Hulme, William J; Croker, Richard; Walker, Alex J; Williamson, Elizabeth J; Bates, Chris; Mehrkar, Amir; Curtis, Helen J; Evans, David; Wing, Kevin; Inglesby, Peter; Drysdale, Henry; Wong, Angel YS; Cockburn, Jonathan; McManus, Robert; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Smeeth, Liam; Evans, Stephen JW; Bhaskaran, Krishnan; Eggo, Rosalind M; Goldacre, Ben; Tomlinson, Laurie A; (2021) Association between living with children and outcomes from covid-19: OpenSAFELY cohort study of 12 million adults in England. BMJ: British Medical Journal, 372. n628-. ISSN 1759-2151 DOI: https://doi.org/10.1136/bmj.n628

Pearson, Carl AB; Bozzani, Fiammetta; Procter, Simon R; Davies, Nicholas G; Huda, Maryam; Jensen, Henning Tarp; Keogh-Brown, Marcus; Khalid, Muhammad; Sweeney, Sedona; Torres-Rueda, Sergio; +3 more... Eggo, Rosalind M; Vassall, Anna; Jit, Mark; (2021) Health impact and cost-effectiveness of COVID-19 vaccination in Sindh Province, Pakistan. medRxiv. 2021.02.24.21252338. DOI: https://doi.org/10.1101/2021.02.24.21252338

Tazare, John; Walker, Alex J; Tomlinson, Laurie; Hickman, George; Rentsch, Christopher T; Williamson, Elizabeth J; Bhaskaran, Krishnan; Evans, David; Wing, Kevin; Mathur, Rohini; +29 more... Wong, Angel YS; Schultze, Anna; Bacon, Sebastian CJ; Bates, Christopher; Morton, Caroline E; Curtis, Helen J; Nightingale, Emily; McDonald, Helen I; Mehrkar, Amir; Inglesby, Peter; Davy, Simon; MacKenna, Brian; Cockburn, Jonathan; Hulme, William J; Warren-Gash, Charlotte; Bhate, Ketaki; Powell, Emma; Mulick, Any; Forbes, Harriet; Minassian, Caroline; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Eggo, Rosalind M; Evans, Stephen JW; Smeeth, Liam; Douglas, Ian J; Goldacre, Ben; (2021) Rates of serious clinical outcomes in survivors of hospitalisation with COVID-19: a descriptive cohort study within the OpenSAFELY platform. MedRxiv. DOI: https://doi.org/10.1101/2021.01.22.21250304

Walker, Jemma L; Grint, Daniel J; Strongman, Helen; Eggo, Rosalind M; Peppa, Maria; Minassian, Caroline; Mansfield, Kathryn E; Rentsch, Christopher T; Douglas, Ian J; Mathur, Rohini; +8 more... Wong, Angel YS; Quint, Jennifer K; Andrews, Nick; Bernal, Jamie Lopez; Scott, J Anthony; Ramsay, Mary; Smeeth, Liam; McDonald, Helen I; (2021) UK prevalence of underlying conditions which increase the risk of severe COVID-19 disease: a point prevalence study using electronic health records. BMC public health, 21 (1). 484-. ISSN 1471-2458 DOI: https://doi.org/10.1186/s12889-021-10427-2

Wong, Angel Ys; MacKenna, Brian; Morton, Caroline E; Schultze, Anna; Walker, Alex J; Bhaskaran, Krishnan; Brown, Jeremy P; Rentsch, Christopher T; Williamson, Elizabeth; Drysdale, Henry; +23 more... Croker, Richard; Bacon, Seb; Hulme, William; Bates, Chris; Curtis, Helen J; Mehrkar, Amir; Evans, David; Inglesby, Peter; Cockburn, Jonathan; McDonald, Helen I; Tomlinson, Laurie; Mathur, Rohini; Wing, Kevin; Forbes, Harriet; Eggo, Rosalind M; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Smeeth, Liam; Douglas, Ian J; Goldacre, Ben; OpenSAFELY Collaborative; (2021) Use of non-steroidal anti-inflammatory drugs and risk of death from COVID-19: an OpenSAFELY cohort analysis based on two cohorts. Annals of the rheumatic diseases. ISSN 0003-4967 DOI: https://doi.org/10.1136/annrheumdis-2020-219517

Abbott, Sam; Hellewell, Joel; Thompson, Robin N; Sherratt, Katharine; Gibbs, Hamish P; Bosse, Nikos I; Munday, James D; Meakin, Sophie; Doughty, Emma L; Chun, June Young; +11 more... Chan, Yung-Wai Desmond; Finger, Flavio; Campbell, Paul; Endo, Akira; Pearson, Carl AB; Gimma, Amy; Russell, Tim; Flasche, Stefan; Kucharski, Adam J; Eggo, Rosalind M; Funk, Sebastian; (2020) Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts. Wellcome Open Research, 5. p. 112. DOI: https://doi.org/10.12688/wellcomeopenres.16006.2

Caudill, Victoria R; Qin, Sarina; Winstead, Ryan; Kaur, Jasmeen; Tisthammer, Kaho; Pineda, E Geo; Solis, Caroline; Cobey, Sarah; Bedford, Trevor; Carja, Oana; +46 more... Eggo, Rosalind M; Koelle, Katia; Lythgoe, Katrina; Regoes, Roland; Roy, Scott; Allen, Nicole; Aviles, Milo; Baker, Brittany A; Bauer, William; Bermudez, Shannel; Carlson, Corey; Castellanos, Edgar; Catalan, Francisca L; Chemel, Angeline Katia; Elliot, Jacob; Evans, Dwayne; Fiutek, Natalie; Fryer, Emily; Goodfellow, Samuel Melvin; Hecht, Mordecai; Hopp, Kellen; Hopson, E Deshawn; Jaberi, Amirhossein; Kinney, Christen; Lao, Derek; Le, Adrienne; Lo, Jacky; Lopez, Alejandro G; López, Andrea; Lorenzo, Fernando G; Luu, Gordon T; Mahoney, Andrew R; Melton, Rebecca L; Nascimento, Gabriela Do; Pradhananga, Anjani; Rodrigues, Nicole S; Shieh, Annie; Sims, Jasmine; Singh, Rima; Sulaeman, Hasan; Thu, Ricky; Tran, Krystal; Tran, Livia; Winters, Elizabeth J; Wong, Albert; Pennings, Pleuni S; (2020) CpG-creating mutations are costly in many human viruses. EVOLUTIONARY ECOLOGY, 34 (3). pp. 339-359. ISSN 0269-7653 DOI: https://doi.org/10.1007/s10682-020-10039-z

Clark, Andrew; Jit, Mark; Warren-Gash, Charlotte; Guthrie, Bruce; Wang, Harry HX; Mercer, Stewart W; Sanderson, Colin; McKee, Martin; Troeger, Christopher; Ong, Kanyin I; +6 more... Checchi, Francesco; Perel, Pablo; Joseph, Sarah; Gibbs, Hamish P; Banerjee, Amitava; Eggo, Rosalind M; (2020) How many are at increased risk of severe COVID-19 disease? Rapid global, regional and national estimates for 2020. medRxiv. 2020.04.18.20064774-. DOI: https://doi.org/10.1101/2020.04.18.20064774

Clark, Andrew; Jit, Mark; Warren-Gash, Charlotte; Guthrie, Bruce; Wang, Harry HX; Mercer, Stewart W; Sanderson, Colin; McKee, Martin; Troeger, Christopher; Ong, Kanyin L; +7 more... Checchi, Francesco; Perel, Pablo; Joseph, Sarah; Gibbs, Hamish P; Banerjee, Amitava; Eggo, Rosalind M; Centre for the Mathematical Modelling of Infectious Diseases COV; (2020) Global, regional, and national estimates of the population at increased risk of severe COVID-19 due to underlying health conditions in 2020: a modelling study. The Lancet. Global Health, 8 (8). e1003-e1017. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(20)30264-3

Clifford, Samuel; Pearson, Carl AB; Klepac, Petra; Van Zandvoort, Kevin; Quilty, Billy J; CMMID COVID-19 working group; Eggo, Rosalind M; Flasche, Stefan; (2020) Effectiveness of interventions targeting air travellers for delaying local outbreaks of SARS-CoV-2. JOURNAL OF TRAVEL MEDICINE, 27 (5). taaa068-. ISSN 1195-1982 DOI: https://doi.org/10.1093/jtm/taaa068

Curtis, Helen J; MacKenna, Brian; Walker, Alex J; Croker, Richard; Mehrkar, Amir; Morton, Caroline E; Bacon, Seb; Hickman, George; Inglesby, Peter; Bates, Chris; +24 more... Evans, David; Ward, Tom; Cockburn, Jonathan; Davy, Simon; Bhaskaran, Krishnan; Schultze, Anna; Rentsch, Christopher T; Williamson, Elizabeth; Hulme, William; McDonald, Helen I; Tomlinson, Laurie; Mathur, Rohini; Drysdale, Henry; Eggo, Rosalind M; Wing, Kevin; Wong, Angel YS; Forbes, Harriet; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen JW; Douglas, Ian J; Smeeth, Liam; Goldacre, Ben; (2020) OpenSAFELY: impact of national guidance on switching from warfarin to direct oral anticoagulants (DOACs) in early phase of COVID-19 pandemic in England. MedRxiv. DOI: https://doi.org/10.1101/2020.12.03.20243535

Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; +13 more... Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John; (2020) Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. MedRxiv. DOI: https://doi.org/10.1101/2020.12.24.20248822 Item availability may be restricted.

Davies, Nicholas G; Kucharski, Adam J; Eggo, Rosalind M; Gimma, Amy; Edmunds, W John; (2020) The effect of non-pharmaceutical interventions on COVID-19 cases, deaths and demand for hospital services in the UK: a modelling study. MedRxiv. DOI: https://doi.org/10.1101/2020.04.01.20049908 Item availability may be restricted.

Davies, Nicholas G; Kucharski, Adam J; Eggo, Rosalind M; Gimma, Amy; Edmunds, W John; Centre for the Mathematical Modelling of Infectious Diseases COV; (2020) Effects of non-pharmaceutical interventions on COVID-19 cases, deaths, and demand for hospital services in the UK: a modelling study. The Lancet. Public health, 5 (7). e375-e385. ISSN 2468-2667 DOI: https://doi.org/10.1016/S2468-2667(20)30133-X

Davies, Nicholas; Sweeney, Sedona; Torres-Rueda, Sergio; Bozzani, Fiammetta; Kitson, Nichola; Barasa, Edwine; Procter, Simon R; Quaife, Matthew; Eggo, Rosalind M; Vassall, Anna; +1 more... Jit, Mark; (2020) The impact of Coronavirus disease 2019 (COVID-19) on health systems and household resources in Africa and South Asia. MedRxiv. DOI: https://doi.org/10.1101/2020.05.06.20092734

Dawa, Jeanette; Emukule, Gideon O; Barasa, Edwine; Widdowson, Marc Alain; Anzala, Omu; van Leeuwen, Edwin; Baguelin, Marc; Chaves, Sandra S; Eggo, Rosalind M; (2020) Seasonal influenza vaccination in Kenya: an economic evaluation using dynamic transmission modelling. BMC MEDICINE, 18 (1). p. 223. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01687-7

Eggo, Rosalind M; Hellewell, Joel; Funk, Sebastian; (2020) Feasibility of controlling COVID-19 - Authors' reply. The Lancet. Global health, 8 (6). e775-. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(20)30128-5

Emery, Jon C; Russell, Timothy W; Liu, Yang; Hellewell, Joel; Pearson, Carl Ab; CMMID COVID-19 Working Group; Knight, Gwenan M; Eggo, Rosalind M; Kucharski, Adam J; Funk, Sebastian; +2 more... Flasche, Stefan; Houben, Rein Mgj; (2020) The contribution of asymptomatic SARS-CoV-2 infections to transmission on the Diamond Princess cruise ship. eLife, 9. e58699-. DOI: https://doi.org/10.7554/eLife.58699

Funk, S; Abbott, S; Atkins, BD; Baguelin, M; Baillie, JK; Birrell, P; Blake, J; Bosse, NI; Burton, J; Carruthers, J; +37 more... Davies, NG; De Angelis, D; Dyson, L; Edmunds, WJ; Eggo, RM; Ferguson, NM; Gaythorpe, K; Gorsich, E; Guyver-Fletcher, G; Hellewell, J; Hill, EM; Holmes, A; House, TA; Jewell, C; Jit, M; Jombart, T; Joshi, I; Keeling, MJ; Kendall, E; Knock, ES; Kucharski, AJ; Lythgoe, KA; Meakin, SR; Munday, JD; Openshaw, PJM; Overton, CE; Pagani, F; Pearson, J; Perez-Guzman, PN; Pellis, L; Scarabel, F; Semple, MG; Sherratt, K; Tang, M; Tildesley, MJ; Van Leeuwen, E; Whittles, LK; (2020) Short-term forecasts to inform the response to the Covid-19 epidemic in the UK. medRxiv preprint - BMJ Yale. ISSN 1468-5833 DOI: https://doi.org/10.1101/2020.11.11.20220962

Gibbs, Hamish; Liu, Yang; Pearson, Carl AB; Jarvis, Christopher I; Grundy, Chris; Quilty, Billy J; Diamond, Charlie; LSHTM CMMID COVID-19 working group; Eggo, Rosalind M; (2020) Changing travel patterns in China during the early stages of the COVID-19 pandemic. NATURE COMMUNICATIONS, 11 (1). p. 5012. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-020-18783-0

Gibbs, Hamish; Nightingale, Emily; Liu, Yang; Cheshire, James; Danon, Leon; Smeeth, Liam; Pearson, Carl AB; Grundy, Chris; Kucharski, Adam J; Eggo, Rosalind M; (2020) Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19. MedRxiv. DOI: https://doi.org/10.1101/2020.10.26.20219550

Hellewell, Joel; Abbott, Sam; Gimma, Amy; Bosse, Nikos I; Jarvis, Christopher I; Russell, Timothy W; Munday, James D; Kucharski, Adam J; Edmunds, W John; Centre for the Mathematical Modelling of Infectious Diseases COV; +2 more... Funk, Sebastian; Eggo, Rosalind M; (2020) Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. The Lancet. Global health, 8 (4). e488-e496. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(20)30074-7

Hellewell, Joel; Funk, Sebastian; Eggo, Rosalind M; (2020) On the fallibility of simulation models in informing pandemic responses - Authors' reply. LANCET GLOBAL HEALTH, 8 (6). e778-e779. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(20)30217-5

Jombart, Thibaut; van Zandvoort, Kevin; Russell, Timothy W; Jarvis, Christopher I; Gimma, Amy; Abbott, Sam; Clifford, Sam; Funk, Sebastian; Gibbs, Hamish; Liu, Yang; +6 more... Pearson, Carl AB; Bosse, Nikos I; Centre for the Mathematical Modelling of Infectious Diseases COV; Eggo, Rosalind M; Kucharski, Adam J; Edmunds, W John; (2020) Inferring the number of COVID-19 cases from recently reported deaths. Wellcome open research, 5. 78-. DOI: https://doi.org/10.12688/wellcomeopenres.15786.1

Jombart, Thibaut; van Zandvoort, Kevin; Russell, Timothy W; Jarvis, Christopher I; Gimma, Amy; Abbott, Sam; Clifford, Sam; Funk, Sebastian; Gibbs, Hamish; Liu, Yang; +6 more... Pearson, Carl AB; Bosse, Nikos I; Centre for the Mathematical Modelling of Infectious Diseases COV; Eggo, Rosalind M; Kucharski, Adam J; Edmunds, W John; (2020) Inferring the number of COVID-19 cases from recently reported deaths. medRxiv. DOI: https://doi.org/10.1101/2020.03.10.20033761

Kucharski, Adam J; Eggo, Rosalind M; (2020) Invisible spread of SARS-CoV-2 - Authors' reply. The Lancet. Infectious diseases, 20 (9). 1012-. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(20)30275-9 Full text not available from this repository.

Kucharski, Adam J; Funk, Sebastian; Eggo, Rosalind M; (2020) The COVID-19 response illustrates that traditional academic reward structures and metrics do not reflect crucial contributions to modern science. PLOS BIOLOGY, 18 (10). e3000913. ISSN 1544-9173 DOI: https://doi.org/10.1371/journal.pbio.3000913

Kucharski, Adam J; Russell, Timothy W; Diamond, Charlie; Liu, Yang; Edmunds, John; Funk, Sebastian; Eggo, Rosalind M; (2020) Early dynamics of transmission and control of COVID-19: a mathematical modelling study. DOI: https://doi.org/10.1101/2020.01.31.20019901

Kucharski, Adam J; Russell, Timothy W; Diamond, Charlie; Liu, Yang; Edmunds, John; Funk, Sebastian; Eggo, Rosalind M; Centre for Mathematical Modelling of Infectious Diseases COVID-1; (2020) Early dynamics of transmission and control of COVID-19: a mathematical modelling study. The Lancet. Infectious diseases, 20 (5). pp. 553-558. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(20)30144-4

Liu, Yang; Eggo, Rosalind M; Kucharski, Adam J; (2020) Secondary attack rate and superspreading events for SARS-CoV-2. LANCET, 395 (10227). e47-. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(20)30462-1 Full text not available from this repository.

Mathur, Rohini; Bear, Laura; Khunti, Kamlesh; Eggo, Rosalind M; (2020) Urgent actions and policies needed to address COVID-19 among UK ethnic minorities. LANCET, 396 (10266). pp. 1866-1868. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(20)32465-X

Mathur, Rohini; Rentsch, Christopher T; Morton, Caroline E; Hulme, William J; Schultze, Anna; MacKenna, Brian; Eggo, Rosalind; Bhaskaran, Krishnan; Wong, Angel YS; Williamson, Elizabeth J; +27 more... Forbes, Harriet; Wing, Kevin; McDonald, Helen I; Bates, Chris; Bacon, Seb; Walker, Alex J; Evans, David; Inglesby, Peter; Mehrkar, Amir; Curtis, Helen J; DeVito, Nicholas J; Croker, Richard; Drysdale, Henry; Cockburn, Jonathan; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Tomlinson, Laurie; Evans, Stephen JW; Grieve, Richard; Harrison, David; Rowan, Kathy; Khunti, Kamlesh; Chaturvedi, Nishi; Smeeth, Liam; Goldacre, Ben; (2020) Ethnic differences in COVID-19 infection, hospitalisation, and mortality: an OpenSAFELY analysis of 17 million adults in England. MedRxiv. DOI: https://doi.org/10.1101/2020.09.22.20198754 Item availability may be restricted.

Prem, Kiesha; Liu, Yang; Russell, Timothy W; Kucharski, Adam J; Eggo, Rosalind M; Davies, Nicholas; Centre for the Mathematical Modelling of Infectious Diseases COV; Jit, Mark; Klepac, Petra; (2020) The effect of control strategies to reduce social mixing on outcomes of the COVID-19 epidemic in Wuhan, China: a modelling study. The Lancet. Public health, 5 (5). e261-e270. DOI: https://doi.org/10.1016/S2468-2667(20)30073-6

Quilty, Billy J; Clifford, Sam; Flasche, Stefan; Eggo, Rosalind M; CMMID nCoV working group; (2020) Effectiveness of airport screening at detecting travellers infected with novel coronavirus (2019-nCoV). Eurosurveillance, 25 (5). pp. 4-9. ISSN 1560-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.5.2000080

Quilty, Billy J; Diamond, Charlie; Liu, Yang; Gibbs, Hamish; Russell, Timothy W; Jarvis, Christopher I; Prem, Kiesha; Pearson, Carl AB; Clifford, Samuel; Flasche, Stefan; +4 more... CMMID COVID-19 working group; Klepac, Petra; Eggo, Rosalind M; Jit, Mark; (2020) The effect of travel restrictions on the geographical spread of COVID-19 between large cities in China: a modelling study. BMC medicine, 18 (1). 259-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01712-9

Rogers, Nina Trivedy; Waterlow, Naomi R; Brindle, Hannah; Enria, Luisa; Eggo, Rosalind M; Lees, Shelley; Roberts, Chrissy H; (2020) Behavioral Change Towards Reduced Intensity Physical Activity Is Disproportionately Prevalent Among Adults With Serious Health Issues or Self-Perception of High Risk During the UK COVID-19 Lockdown. Frontiers in Public Health, 8. 575091-. DOI: https://doi.org/10.3389/fpubh.2020.575091

Rogers, Nina Trivedy; Waterlow, Naomi; Brindle, Hannah; Enria, Luisa; Eggo, Rosalind M; Lees, Shelley; Roberts, Chrissy H; (2020) Behavioural change towards reduced intensity physical activity is disproportionately prevalent among adults with serious health issues or self-perception of high risk during the UK COVID-19 lockdown. Frontiers in public health. ISSN 2296-2565 DOI: https://doi.org/10.1101/2020.05.12.20098921

Russell, Timothy W; Golding, Nick; Hellewell, Joel; Abbott, Sam; Wright, Lawrence; Pearson, Carl AB; Zandvoort, Kevin van; Jarvis, Christopher I; Gibbs, Hamish; Liu, Yang; +3 more... Eggo, Rosalind M; Edmunds, W John; Kucharski, Adam J; (2020) Reconstructing the early global dynamics of under-ascertained COVID-19 cases and infections. DOI: https://doi.org/10.1101/2020.07.07.20148460

Russell, Timothy W; Golding, Nick; Hellewell, Joel; Abbott, Sam; Wright, Lawrence; Pearson, Carl AB; van Zandvoort, Kevin; Jarvis, Christopher I; Gibbs, Hamish; Liu, Yang; +4 more... Eggo, Rosalind M; Edmunds, W John; Kucharski, Adam J; CMMID COVID-19 working group; (2020) Reconstructing the early global dynamics of under-ascertained COVID-19 cases and infections. BMC medicine, 18 (1). 332-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01790-9

Russell, Timothy W; Hellewell, Joel; Jarvis, Christopher I; Van Zandvoort, Kevin; Abbott, Sam; Ratnayake, Ruwan; Flasche, Stefan; Eggo, Rosalind M; Edmunds, W John; Kucharski, Adam J; (2020) Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. BMJ global health. ISSN 2059-7908 DOI: https://doi.org/10.1101/2020.03.05.20031773

Russell, Timothy W; Hellewell, Joel; Jarvis, Christopher I; van Zandvoort, Kevin; Abbott, Sam; Ratnayake, Ruwan; Cmmid Covid-Working Group; Flasche, Stefan; Eggo, Rosalind M; Edmunds, W John; +1 more... Kucharski, Adam J; (2020) Estimating the infection and case fatality ratio for coronavirus disease (COVID-19) using age-adjusted data from the outbreak on the Diamond Princess cruise ship, February 2020. Euro Surveill, 25 (12). ISSN 1560-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.12.2000256

Thompson, Robin N; Hollingsworth, T Déirdre; Isham, Valerie; Arribas-Bel, Daniel; Ashby, Ben; Britton, Tom; Challenor, Peter; Chappell, Lauren HK; Clapham, Hannah; Cunniffe, Nik J; +33 more... Dawid, A Philip; Donnelly, Christl A; Eggo, Rosalind M; Funk, Sebastian; Gilbert, Nigel; Glendinning, Paul; Gog, Julia R; Hart, William S; Heesterbeek, Hans; House, Thomas; Keeling, Matt; Kiss, István Z; Kretzschmar, Mirjam E; Lloyd, Alun L; McBryde, Emma S; McCaw, James M; McKinley, Trevelyan J; Miller, Joel C; Morris, Martina; O'Neill, Philip D; Parag, Kris V; Pearson, Carl AB; Pellis, Lorenzo; Pulliam, Juliet RC; Ross, Joshua V; Tomba, Gianpaolo Scalia; Silverman, Bernard W; Struchiner, Claudio J; Tildesley, Michael J; Trapman, Pieter; Webb, Cerian R; Mollison, Denis; Restif, Olivier; (2020) Key questions for modelling COVID-19 exit strategies. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 287 (1932). p. 20201405. ISSN 0962-8452 DOI: https://doi.org/10.1098/rspb.2020.1405

Viner, Russell M; Mytton, Oliver T; Bonell, Chris; Melendez-Torres, GJ; Ward, Joseph; Hudson, Lee; Waddington, Claire; Thomas, James; Russell, Simon; van der Klis, Fiona; +6 more... Koirala, Archana; Ladhani, Shamez; Panovska-Griffiths, Jasmina; Davies, Nicholas G; Booy, Robert; Eggo, Rosalind M; (2020) Susceptibility to SARS-CoV-2 Infection Among Children and Adolescents Compared With Adults: A Systematic Review and Meta-analysis. JAMA PEDIATRICS, 175 (2). pp. 143-156. ISSN 2168-6203 DOI: https://doi.org/10.1001/jamapediatrics.2020.4573 Item availability may be restricted.

Walker, Jemma L; Grint, Daniel J; Strongman, Helen; Eggo, Rosalind M; Peppa, Maria; Minassian, Caroline; Mansfield, Kathryn E; Rentsch, Christopher T; Douglas, Ian J; Mathur, Rohini; +8 more... Wong, Angel YS; Quint, Jennifer K; Andrews, Nick; Bernal, Jamie Lopez; Scott, J Anthony; Ramsay, Mary; Smeeth, Liam; McDonald, Helen; (2020) UK prevalence of underlying conditions which increase the risk of severe COVID-19 disease: a point prevalence study using electronic health records. MedRxiv. DOI: https://doi.org/10.1101/2020.08.24.20179192

Williamson, Elizabeth J; Tazare, John; Bhaskaran, Krishnan; Walker, Alex J; McDonald, Helen I; Tomlinson, Laurie; Bacon, Sebastian; Bates, Chris; Curtis, Helen J; Forbes, Harriet; +32 more... Minassian, Caroline; Morton, Caroline E; Nightingale, Emily; Mehrkar, Amir; Evans, Dave; Nicholson, Brian D; Leon, David; Inglesby, Peter; MacKenna, Brian; Cockburn, Jonathan; Davies, Nicholas G; Hulme, William; Morley, Jessica; Douglas, Ian J; Rentsch, Christopher T; Mathur, Rohini; Wong, Angel; Schultze, Anna; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Perera, Rafael; Grieve, Richard; Harrison, David; Steyerberg, Ewout; Eggo, Rosalind M; Diaz-Ordaz, Karla; Keogh, Ruth; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; (2020) Study protocol: Comparison of different risk prediction modelling approaches for COVID-19 related death using the OpenSAFELY platform. Wellcome Open Research, 5. p. 243. DOI: https://doi.org/10.12688/wellcomeopenres.16353.1

van Leeuwen, Edwin; Sandmann, Frank G; Eggo, Rosalind M; White, Peter J; (2020) Time use and social mixing during and around festive periods: Potential changes in the age distribution of COVID-19 cases from increased intergenerational interactions. medRxiv preprint - BMJ Yale. ISSN 1468-5833 DOI: https://doi.org/10.1101/2020.12.21.20248607

Bellan, Steven E; Eggo, Rosalind M; Gsell, Pierre-Stéphane; Kucharski, Adam J; Dean, Natalie E; Donohue, Richard; Zook, Matt; Edmunds, W John; Odhiambo, Frank; Longini, Ira M; +3 more... Brisson, Marc; Mahon, Barbara E; Henao-Restrepo, Ana Maria; (2019) An online decision tree for vaccine efficacy trial design during infectious disease epidemics: The InterVax-Tool. Vaccine, 37 (31). pp. 4376-4381. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2019.06.019

Funk, Sebastian; Camacho, Anton; Kucharski, Adam J; Lowe, Rachel; Eggo, Rosalind M; Edmunds, W John; (2019) Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15. PLoS computational biology, 15 (2). e1006785-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1006785

Jendrossek, Mario; Edmunds, W John; Rohan, Hana; Clifford, Samuel; Mooney, Thomas A; Eggo, Rosalind M; (2019) Health care worker vaccination against Ebola: Vaccine acceptance and employment duration in Sierra Leone. Vaccine, 37 (8). pp. 1101-1108. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.12.060

Polonsky, Jonathan A; Baidjoe, Amrish; Kamvar, Zhian N; Cori, Anne; Durski, Kara; Edmunds, W John; Eggo, Rosalind M; Funk, Sebastian; Kaiser, Laurent; Keating, Patrick; +9 more... de Waroux, Olivier le Polain; Marks, Michael; Moraga, Paula; Morgan, Oliver; Nouvellet, Pierre; Ratnayake, Ruwan; Roberts, Chrissy H; Whitworth, Jimmy; Jombart, Thibaut; (2019) Outbreak analytics: a developing data science for informing the response to emerging pathogens. Philosophical Transactions of the Royal Society B: Biological Sciences, 374 (1776). 20180276-. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2018.0276

Robert, Alexis; Camacho, Anton; Edmunds, W John; Baguelin, Marc; Muyembe Tamfum, Jean-Jacques; Rosello, Alicia; Kéïta, Sakoba; Eggo, Rosalind M; (2019) Control of Ebola virus disease outbreaks: Comparison of health care worker-targeted and community vaccination strategies. Epidemics, 27. pp. 106-114. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2019.03.001

Robert, Alexis; Edmunds, W John; Watson, Conall H; Henao-Restrepo, Ana Maria; Gsell, Pierre-Stéphane; Williamson, Elizabeth; Longini, Ira M; Sakoba, Keïta; Kucharski, Adam J; Touré, Alhassane; +13 more... Nadlaou, Sévérine Danmadji; Diallo, Boubacar; Barry, Mamamdou Saidou; Fofana, Thierno Oumar; Camara, Louceny; Kaba, Ibrahima Lansana; Sylla, Lansana; Diaby, Mohamed Lamine; Soumah, Ousmane; Diallo, Abdourahime; Niare, Amadou; Diallo, Abdourahmane; Eggo, Rosalind M; (2019) Determinants of Transmission Risk During the Late Stage of the West African Ebola Epidemic. American Journal of Epidemiology, 188 (7). pp. 1319-1327. ISSN 0002-9262 DOI: https://doi.org/10.1093/aje/kwz090

van Zandvoort, Kevin; Checchi, Francesco; Diggle, Emma; Eggo, Rosalind M; Gadroen, Kartini; Mulholland, Kim; McGowan, Catherine R; le Polain de Waroux, Olivier; Rao, V Bhargavi; Satzke, Catherine; +1 more... Flasche, Stefan; (2019) Pneumococcal conjugate vaccine use during humanitarian crises. Vaccine, 37 (45). pp. 6787-6792. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2019.09.038

Camacho, Anton; Bouhenia, Malika; Alyusfi, Reema; Alkohlani, Abdulhakeem; Naji, Munna Abdulla Mohammed; de Radiguès, Xavier; Abubakar, Abdinasir M; Almoalmi, Abdulkareem; Seguin, Caroline; Sagrado, Maria Jose; +16 more... Poncin, Marc; McRae, Melissa; Musoke, Mohammed; Rakesh, Ankur; Porten, Klaudia; Haskew, Christopher; Atkins, Katherine E; Eggo, Rosalind M; Azman, Andrew S; Broekhuijsen, Marije; Saatcioglu, Mehmet Akif; Pezzoli, Lorenzo; Quilici, Marie-Laure; Al-Mesbahy, Abdul Rahman; Zagaria, Nevio; Luquero, Francisco J; (2018) Cholera epidemic in Yemen, 2016-18: an analysis of surveillance data. The Lancet Global health, 6 (6). e680-e690. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(18)30230-4

Eggo, Rosalind M; Kucharski, Adam J; (2018) Expected Duration of Adverse Pregnancy Outcomes after Zika Epidemic. Emerging infectious diseases, 24 (1). pp. 127-130. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2401.170482

O'Reilly, Kathleen M; Lowe, Rachel; Edmunds, W John; Mayaud, Philippe; Kucharski, Adam; Eggo, Rosalind M; Funk, Sebastian; Bhatia, Deepit; Khan, Kamran; Kraemer, Moritz UG; +8 more... Wilder-Smith, Annelies; Rodrigues, Laura C; Brasil, Patricia; Massad, Eduardo; Jaenisch, Thomas; Cauchemez, Simon; Brady, Oliver J; Yakob, Laith; (2018) Projecting the end of the Zika virus epidemic in Latin America: a modelling analysis. BMC medicine, 16 (1). 180-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-018-1158-8

Opatowski, Lulla; Baguelin, Marc; Eggo, Rosalind M; (2018) Influenza Interaction with Cocirculating Pathogens, and Its Impact on Surveillance, Pathogenesis and Epidemic Profile: A Key Role for Mathematical Modeling. PLoS Pathogens, 14 (2). ISSN 1553-7366 DOI: https://doi.org/10.1101/203265

Opatowski, Lulla; Baguelin, Marc; Eggo, Rosalind M; (2018) Influenza interaction with cocirculating pathogens and its impact on surveillance, pathogenesis, and epidemic profile: A key role for mathematical modelling. PLoS pathogens, 14 (2). e1006770-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1006770

Funk, Sebastian; Ciglenecki, Iza; Tiffany, Amanda; Gignoux, Etienne; Camacho, Anton; Eggo, Rosalind M; Kucharski, Adam J; Edmunds, W John; Bolongei, Josephus; Azuma, Phillip; +9 more... Clement, Peter; Alpha, Tamba S; Sterk, Esther; Telfer, Barbara; Engel, Gregory; Parker, Lucy Anne; Suzuki, Motoi; Heijenberg, Nico; Reeder, Bruce; (2017) The impact of control strategies and behavioural changes on the elimination of Ebola from Lofa County, Liberia. Philosophical transactions of the Royal Society of London Series B, Biological sciences, 372 (1721). p. 20160302. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2016.0302

Johnson, Helen C; Lafferty, Erin I; Eggo, Rosalind M; Louie, Karly; Soldan, Kate; Waller, Jo; Edmunds, W John; (2017) Effect of HPV vaccination and cervical cancer screening in England by ethnicity: a modelling study. The lancet Public health, 3 (1). e44-e51. ISSN 2468-2667 DOI: https://doi.org/10.1016/S2468-2667(17)30238-4

Camacho, A; Eggo, RM; Goeyvaerts, N; Vandebosch, A; Mogg, R; Funk, S; Kucharski, AJ; Watson, CH; Vangeneugden, T; Edmunds, WJ; (2016) Real-time dynamic modelling for the design of a cluster-randomized phase 3 Ebola vaccine trial in Sierra Leone. Vaccine, 35 (4). pp. 544-551. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.12.019

Eggo, Rosalind M; Scott, James G; Galvani, Alison P; Meyers, Lauren Ancel; (2016) Respiratory virus transmission dynamics determine timing of asthma exacerbation peaks: Evidence from a population-level model. Proceedings of the National Academy of Sciences of the United States of America, 113 (8). pp. 2194-2199. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1518677113

Funk, Sebastian; Camacho, Anton; Kucharski, Adam J; Eggo, Rosalind M; Edmunds, W John; (2016) Real-time forecasting of infectious disease dynamics with a stochastic semi-mechanistic model. Epidemics, 22. pp. 56-61. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2016.11.003

Funk, Sebastian; Kucharski, Adam J; Camacho, Anton; Eggo, Rosalind M; Yakob, Laith; Murray, Lawrence M; Edmunds, W John; (2016) Comparative Analysis of Dengue and Zika Outbreaks Reveals Differences by Setting and Virus. PLoS neglected tropical diseases, 10 (12). e0005173-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005173

Kucharski, Adam J; Eggo, Rosalind M; Watson, Conall H; Camacho, Anton; Funk, Sebastian; Edmunds, W John; (2016) Effectiveness of Ring Vaccination as Control Strategy for Ebola Virus Disease. Emerging infectious diseases, 22 (1). pp. 105-108. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2201.151410

Kucharski, Adam J; Funk, Sebastian; Eggo, Rosalind M; Mallet, Henri-Pierre; Edmunds, W John; Nilles, Eric J; (2016) Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013-14 French Polynesia Outbreak. PLoS neglected tropical diseases, 10 (5). e0004726-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004726

Reid, Margaret; Gunn, Julia; Shah, Snehal; Donovan, Michael; Eggo, Rosalind; Babin, Steven; Stajner, Ivanka; Rogers, Eric; Ensor, Katherine B; Raun, Loren; +8 more... Levy, Jonathan I; Painter, Ian; Phipatanakul, Wanda; Yip, Fuyuen; Nath, Anjali; Streichert, Laura C; Tong, Catherine; Burkom, Howard; (2016) Cross-Disciplinary Consultancy to Enhance Predictions of Asthma Exacerbation Risk in Boston. Online journal of public health informatics, 8 (3). e199-. ISSN 1947-2579 DOI: https://doi.org/10.5210/ojphi.v8i3.6902

Sissoko, Daouda; Duraffour, Sophie; Kerber, Romy; Kolie, Jacques Seraphin; Beavogui, Abdoul Habib; Camara, Alseny-Modet; Colin, Géraldine; Rieger, Toni; Oestereich, Lisa; Pályi, Bernadett; +31 more... Wurr, Stephanie; Guedj, Jeremie; Nguyen, Thi Huyen Tram; Eggo, Rosalind M; Watson, Conall H; Edmunds, W John; Bore, Joseph Akoi; Koundouno, Fara Raymond; Cabeza-Cabrerizo, Mar; Carter, Lisa L; Kafetzopoulou, Liana Eleni; Kuisma, Eeva; Michel, Janine; Patrono, Livia Victoria; Rickett, Natasha Y; Singethan, Katrin; Rudolf, Martin; Lander, Angelika; Pallasch, Elisa; Bockholt, Sabrina; Rodríguez, Estefanía; Di Caro, Antonino; Wölfel, Roman; Gabriel, Martin; Gurry, Céline; Formenty, Pierre; Keïta, Sakoba; Malvy, Denis; Carroll, Miles W; Anglaret, Xavier; Günther, Stephan; (2016) Persistence and clearance of Ebola virus RNA from seminal fluid of Ebola virus disease survivors: a longitudinal analysis and modelling study. The Lancet Global health, 5 (1). e80-e88. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(16)30243-1

Camacho, Anton; Eggo, Rosalind M; Funk, Sebastian; Watson, Conall H; Kucharski, Adam J; Edmunds, W John; (2015) Estimating the probability of demonstrating vaccine efficacy in the declining Ebola epidemic: a Bayesian modelling approach. BMJ open, 5 (12). e009346-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2015-009346

Eggo, Rosalind M; Watson, Conall H; Camacho, Anton; Kucharski, Adam J; Funk, Sebastian; Edmunds, W John; (2015) Duration of Ebola virus RNA persistence in semen of survivors: population-level estimates and projections. Euro surveillance, 20 (48). 30083-. ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2015.20.48.30083

Hoen, Anne G; Hladish, Thomas J; Eggo, Rosalind M; Lenczner, Michael; Brownstein, John S; Meyers, Lauren Ancel; (2015) Epidemic Wave Dynamics Attributable to Urban Community Structure: A Theoretical Characterization of Disease Transmission in a Large Network. Journal of medical Internet research, 17 (7). e169-. ISSN 1439-4456 DOI: https://doi.org/10.2196/jmir.3720

Eggo, Rosalind M; Cauchemez, Simon; Ferguson, Neil M; (2011) Spatial dynamics of the 1918 influenza pandemic in England, Wales and the United States. Journal of the Royal Society, Interface / the Royal Society, 8 (55). pp. 233-243. ISSN 1742-5689 DOI: https://doi.org/10.1098/rsif.2010.0216

Jombart, T; Eggo, RM; Dodd, PJ; Balloux, F; (2010) Reconstructing disease outbreaks from genetic data: a graph approach. Heredity, 106 (2). pp. 383-390. ISSN 0018-067X DOI: https://doi.org/10.1038/hdy.2010.78 Full text not available from this repository.

Jombart, Thibaut; Eggo, Rosalind M; Dodd, Pete; Balloux, Francois; (2009) Spatiotemporal dynamics in the early stages of the 2009 A/H1N1 influenza pandemic. PLoS currents, 1 (AUG). RRN1026-. ISSN 2157-3999 DOI: https://doi.org/10.1371/currents.rrn1026