Bhaskaran, Krishnan; Rentsch, Christopher T; Hickman, George; Hulme, William J; Schultze, Anna; Curtis, Helen J; Wing, Kevin; Warren-Gash, Charlotte; Tomlinson, Laurie; Bates, Chris J; +22 more... Mathur, Rohini; MacKenna, Brian; Mahalingasivam, Viyaasan; Wong, Angel; Walker, Alex J; Morton, Caroline E; Grint, Daniel; Mehrkar, Amir; Eggo, Rosalind M; Inglesby, Peter; Douglas, Ian J; McDonald, Helen I; Cockburn, Jonathan; Williamson, Elizabeth J; Evans, David; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Bacon, Sebastian; Smeeth, Liam; Goldacre, Ben; (2022) Overall and cause-specific hospitalisation and death after COVID-19 hospitalisation in England: A cohort study using linked primary care, secondary care, and death registration data in the OpenSAFELY platform. PLoS medicine, 19 (1). e1003871-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1003871

Curtis, Helen J; Inglesby, Peter; MacKenna, Brian; Croker, Richard; Hulme, William J; Rentsch, Christopher T; Bhaskaran, Krishnan; Mathur, Rohini; Morton, Caroline E; Bacon, Sebastian Cj; +27 more... Smith, Rebecca M; Evans, David; Mehrkar, Amir; Tomlinson, Laurie; Walker, Alex J; Bates, Christopher; Hickman, George; Ward, Tom; Morley, Jessica; Cockburn, Jonathan; Davy, Simon; Williamson, Elizabeth J; Eggo, Rosalind M; Parry, John; Hester, Frank; Harper, Sam; O'Hanlon, Shaun; Eavis, Alex; Jarvis, Richard; Avramov, Dima; Griffiths, Paul; Fowles, Aaron; Parkes, Nasreen; Evans, Stephen Jw; Douglas, Ian J; Smeeth, Liam; Goldacre, Ben; (2022) Recording of 'COVID-19 vaccine declined': a cohort study on 57.9 million National Health Service patients' records in situ using OpenSAFELY, England, 8 December 2020 to 25 May 2021. Eurosurveillance, 27 (33). ISSN 1560-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2022.27.33.2100885

Hulme, William J; Williamson, Elizabeth J; Green, Amelia CA; Bhaskaran, Krishnan; McDonald, Helen I; Rentsch, Christopher T; Schultze, Anna; Tazare, John; Curtis, Helen J; Walker, Alex J; +32 more... Tomlinson, Laurie A; Palmer, Tom; Horne, Elsie MF; MacKenna, Brian; Morton, Caroline E; Mehrkar, Amir; Morley, Jessica; Fisher, Louis; Bacon, Sebastian CJ; Evans, David; Inglesby, Peter; Hickman, George; Davy, Simon; Ward, Tom; Croker, Richard; Eggo, Rosalind M; Wong, Angel YS; Mathur, Rohini; Wing, Kevin; Forbes, Harriet; Grint, Daniel J; Douglas, Ian J; Evans, Stephen JW; Smeeth, Liam; Bates, Chris; Cockburn, Jonathan; Parry, John; Hester, Frank; Harper, Sam; Sterne, Jonathan AC; Hernán, Miguel A; Goldacre, Ben; (2022) Comparative effectiveness of ChAdOx1 versus BNT162b2 covid-19 vaccines in health and social care workers in England: cohort study using OpenSAFELY. BMJ, 378. e068946-. DOI: https://doi.org/10.1136/bmj-2021-068946

Kasstan, Ben; Letley, Louise; Mounier-Jack, Sandra; Klynman, Nicole; Gaskell, Katherine M; Eggo, Rosalind M; Marks, Michael; Chantler, Tracey; (2022) Tailoring immunisation programmes in a time of SARS-CoV-2: What can be learnt by comparing the findings of childhood and COVID-19 vaccine evaluation studies in an underserved population? Public health in practice, 4. 100287-. DOI: https://doi.org/10.1016/j.puhip.2022.100287

Kasstan, Ben; Mounier-Jack, Sandra; Gaskell, Katherine M; Eggo, Rosalind M; Marks, Michael; Chantler, Tracey; (2022) "We've all got the virus inside us now": Disaggregating public health relations and responsibilities for health protection in pandemic London. Social Science and Medicine, 309. 115237-. ISSN 0277-9536 DOI: https://doi.org/10.1016/j.socscimed.2022.115237

Kasstan, Ben; Mounier-Jack, Sandra; Letley, Louise; Gaskell, Katherine M; Roberts, Chrissy H; Stone, Neil RH; Lal, Sham; Eggo, Rosalind M; Marks, Michael; Chantler, Tracey; (2022) Localising vaccination services: Qualitative insights on public health and minority group collaborations to co-deliver coronavirus vaccines. Vaccine, 40 (14). pp. 2226-2232. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2022.02.056

Krieger, Ekaterina; Kudryavtsev, Alexander; Sharashova, Ekaterina; Postoev, Vitaly; Belova, Natalia; Shagrov, Leonid; Zvedina, Julia; Drapkina, Oxana; Kontsevaya, Anna; Shalnova, Svetlana; +4 more... Brenn, Tormod; Shkolnikov, Vladimir M; Eggo, Rosalind M; Leon, David A; (2022) Seroprevalence of SARS-Cov-2 Antibodies in Adults, Arkhangelsk, Russia. EMERGING INFECTIOUS DISEASES, 28 (2). pp. 463-465. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2802.211640

MacKenna, Brian; Kennedy, Nicholas A; Mehrkar, Amir; Rowan, Anna; Galloway, James; Matthewman, Julian; Mansfield, Kathryn E; Bechman, Katie; Yates, Mark; Brown, Jeremy; +38 more... Schultze, Anna; Norton, Sam; Walker, Alex J; Morton, Caroline E; Harrison, David; Bhaskaran, Krishnan; Rentsch, Christopher T; Williamson, Elizabeth; Croker, Richard; Bacon, Seb; Hickman, George; Ward, Tom; Davy, Simon; Green, Amelia; Fisher, Louis; Hulme, William; Bates, Chris; Curtis, Helen J; Tazare, John; Eggo, Rosalind M; Evans, David; Inglesby, Peter; Cockburn, Jonathan; McDonald, Helen I; Tomlinson, Laurie A; Mathur, Rohini; Wong, Angel YS; Forbes, Harriet; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Smeeth, Liam; Lees, Charlie W; Evans, Stephen JW; Goldacre, Ben; Smith, Catherine H; Langan, Sinéad M; (2022) Risk of severe COVID-19 outcomes associated with immune-mediated inflammatory diseases and immune-modifying therapies: a nationwide cohort study in the OpenSAFELY platform. The Lancet Rheumatology, 4 (7). e490-e506. ISSN 2665-9913 DOI: https://doi.org/10.1016/S2665-9913(22)00098-4

OpenSAFELY Collaborative; Green, Amelia; Curtis, Helen; Hulme, William; Williamson, Elizabeth; McDonald, Helen; Bhaskaran, Krishnan; Rentsch, Christopher; Schultze, Anna; MacKenna, Brian; +32 more... Mahalingasivam, Viyaasan; Tomlinson, Laurie; Walker, Alex; Fisher, Louis; Massey, Jon; Andrews, Colm; Hopcroft, Lisa; Morton, Caroline; Croker, Richard; Morley, Jessica; Mehrkar, Amir; Bacon, Seb; Evans, David; Inglesby, Peter; Hickman, George; Ward, Tom; Davy, Simon; Mathur, Rohini; Tazare, John; Eggo, Rosalind; Wing, Kevin; Wong, Angel; Forbes, Harriet; Bates, Chris; Cockburn, Jonathan; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian; Evans, Stephen; Smeeth, Liam; Goldacre, Ben; (2022) Describing the population experiencing COVID-19 vaccine breakthrough following second vaccination in England: a cohort study from OpenSAFELY. BMC medicine, 20 (1). 243-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-022-02422-0

OpenSAFELY Collaborative; Williamson, Elizabeth J; Tazare, John; Bhaskaran, Krishnan; McDonald, Helen I; Walker, Alex J; Tomlinson, Laurie; Wing, Kevin; Bacon, Sebastian; Bates, Chris; +35 more... Curtis, Helen J; Forbes, Harriet J; Minassian, Caroline; Morton, Caroline E; Nightingale, Emily; Mehrkar, Amir; Evans, David; Nicholson, Brian D; Leon, David A; Inglesby, Peter; MacKenna, Brian; Davies, Nicholas G; DeVito, Nicholas J; Drysdale, Henry; Cockburn, Jonathan; Hulme, William J; Morley, Jessica; Douglas, Ian; Rentsch, Christopher T; Mathur, Rohini; Wong, Angel; Schultze, Anna; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Grieve, Richard; Harrison, David A; Steyerberg, Ewout W; Eggo, Rosalind M; Diaz-Ordaz, Karla; Keogh, Ruth; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; (2022) Comparison of methods for predicting COVID-19-related death in the general population using the OpenSAFELY platform. Diagnostic and prognostic research, 6 (1). 6-. ISSN 2397-7523 DOI: https://doi.org/10.1186/s41512-022-00120-2

Patel, Riyaz S; Denaxas, Spiros; Howe, Laurence J; Eggo, Rosalind M; Shah, Anoop D; Allen, Naomi E; Danesh, John; Hingorani, Aroon; Sudlow, Cathie; Hemingway, Harry; (2022) Reproducible disease phenotyping at scale: Example of coronary artery disease in UK Biobank. PloS one, 17 (4). ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0264828

Sandmann, Frank G; Tessier, Elise; Lacy, Joanne; Kall, Meaghan; Van Leeuwen, Edwin; Charlett, Andre; Eggo, Rosalind M; Dabrera, Gavin; Edmunds, W John; Ramsay, Mary; +3 more... Campbell, Helen; Amirthalingam, Gayatri; Jit, Mark; (2022) Long-Term Health-Related Quality of Life in Non-Hospitalized Coronavirus Disease 2019 (COVID-19) Cases With Confirmed Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection in England: Longitudinal Analysis and Cross-Sectional Comparison With Controls. Clinical infectious diseases, 75 (1). e962-e973. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciac151

Schultze, Anna; Nightingale, Emily; Evans, David; Hulme, William; Rosello, Alicia; Bates, Chris; Cockburn, Jonathan; MacKenna, Brian; Curtis, Helen J; Morton, Caroline E; +32 more... Croker, Richard; Bacon, Seb; McDonald, Helen I; Rentsch, Christopher T; Bhaskaran, Krishnan; Mathur, Rohini; Tomlinson, Laurie A; Williamson, Elizabeth J; Forbes, Harriet; Tazare, John; Grint, Daniel; Walker, Alex J; Inglesby, Peter; DeVito, Nicholas J; Mehrkar, Amir; Hickman, George; Davy, Simon; Ward, Tom; Fisher, Louis; Green, Amelia Ca; Wing, Kevin; Wong, Angel Ys; McManus, Robert; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Douglas, Ian J; Smeeth, Liam; Eggo, Rosalind M; Goldacre, Ben; Leon, David A; (2022) Mortality among Care Home Residents in England during the first and second waves of the COVID-19 pandemic: an observational study of 4.3 million adults over the age of 65. The Lancet regional health. Europe, 14. 100295-. ISSN 2666-7762 DOI: https://doi.org/10.1016/j.lanepe.2021.100295

Waites, W; Cavaliere, M; Danos, V; Datta, R; Eggo, RM; Hallett, TB; Manheim, D; Panovska-Griffiths, J; Russell, TW; Zarnitsyna, VI; (2022) Compositional modelling of immune response and virus transmission dynamics. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 380 (2233). 20210307-. ISSN 1364-503X DOI: https://doi.org/10.1098/rsta.2021.0307

Walker, Jemma L; Schultze, Anna; Tazare, John; Tamborska, Arina; Singh, Bhagteshwar; Donegan, Katherine; Stowe, Julia; Morton, Caroline E; Hulme, William J; Curtis, Helen J; +27 more... Williamson, Elizabeth J; Mehrkar, Amir; Eggo, Rosalind M; Rentsch, Christopher T; Mathur, Rohini; Bacon, Sebastian; Walker, Alex J; Davy, Simon; Evans, David; Inglesby, Peter; Hickman, George; MacKenna, Brian; Tomlinson, Laurie; Ca Green, Amelia; Fisher, Louis; Cockburn, Jonathan; Parry, John; Hester, Frank; Harper, Sam; Bates, Christopher; Evans, Stephen Jw; Solomon, Tom; Andrews, Nick J; Douglas, Ian J; Goldacre, Ben; Smeeth, Liam; McDonald, Helen I; (2022) Safety of COVID-19 vaccination and acute neurological events: A self-controlled case series in England using the OpenSAFELY platform. Vaccine, 40 (32). pp. 4479-4487. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2022.06.010

Waterlow, NR; (2022) Mathematical Modelling of Cross-protection Between Respiratory Viruses. PhD (research paper style) thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04664930

Waterlow, Naomi R; Toizumi, Michiko; van Leeuwen, Edwin; Thi Nguyen, Hien-Anh; Myint-Yoshida, Lay; Eggo, Rosalind M; Flasche, Stefan; (2022) Evidence for influenza and RSV interaction from 10 years of enhanced surveillance in Nha Trang, Vietnam, a modelling study. PLoS Computational Biology, 18 (6). e1010234-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1010234

Wing, Kevin; Grint, Daniel J; Mathur, Rohini; Gibbs, Hamish P; Hickman, George; Nightingale, Emily; Schultze, Anna; Forbes, Harriet; Nafilyan, Vahé; Bhaskaran, Krishnan; +16 more... Williamson, Elizabeth; House, Thomas; Pellis, Lorenzo; Herrett, Emily; Gautam, Nileesa; Curtis, Helen J; Rentsch, Christopher T; Wong, Angel YS; MacKenna, Brian; Mehrkar, Amir; Bacon, Seb; Douglas, Ian J; Evans, Stephen JW; Tomlinson, Laurie; Goldacre, Ben; Eggo, Rosalind M; (2022) Association between household composition and severe COVID-19 outcomes in older people by ethnicity: an observational cohort study using the OpenSAFELY platform. International Journal of Epidemiology. dyac158-. ISSN 0300-5771 DOI: https://doi.org/10.1093/ije/dyac158

Wong, Angel Ys; Tomlinson, Laurie; Brown, Jeremy P; Elson, William; Walker, Alex J; Schultze, Anna; Morton, Caroline E; Evans, David; Inglesby, Peter; MacKenna, Brian; +21 more... Bhaskaran, Krishnan; Rentsch, Christopher T; Powell, Emma; Williamson, Elizabeth; Croker, Richard; Bacon, Seb; Hulme, William; Bates, Chris; Curtis, Helen J; Mehrkar, Amir; Cockburn, Jonathan; McDonald, Helen I; Mathur, Rohini; Wing, Kevin; Forbes, Harriet; Eggo, Rosalind M; Evans, Stephen Jw; Smeeth, Liam; Goldacre, Ben; Douglas, Ian J; (The OpenSAFELY Collaborative); (2022) Association between oral anticoagulants and COVID-19-related outcomes: a population-based cohort study. The British journal of general practice : the journal of the Royal College of General Practitioners, 72 (720). e456-e463. ISSN 0960-1643 DOI: https://doi.org/10.3399/BJGP.2021.0689

Zheng, Bang; Green, Amelia CA; Tazare, John; Curtis, Helen J; Fisher, Louis; Nab, Linda; Schultze, Anna; Mahalingasivam, Viyaasan; Parker, Edward PK; Hulme, William J; +23 more... Bacon, Sebastian CJ; DeVito, Nicholas J; Bates, Christopher; Evans, David; Inglesby, Peter; Drysdale, Henry; Davy, Simon; Cockburn, Jonathan; Morton, Caroline E; Hickman, George; Ward, Tom; Smith, Rebecca M; Parry, John; Hester, Frank; Harper, Sam; Mehrkar, Amir; Eggo, Rosalind M; Walker, Alex J; Evans, Stephen JW; Douglas, Ian J; MacKenna, Brian; Goldacre, Ben; Tomlinson, Laurie A; (2022) Comparative effectiveness of sotrovimab and molnupiravir for prevention of severe covid-19 outcomes in patients in the community: observational cohort study with the OpenSAFELY platform. BMJ (Clinical research ed.), 379. e071932-. ISSN 0959-8138 DOI: https://doi.org/10.1136/bmj-2022-071932

van Zandvoort, Kevin; Bobe, Mohamed Omer; Hassan, Abdirahman Ibrahim; Abdi, Mohamed Ismail; Ahmed, Mohammed Saed; Soleman, Saeed Mohamood; Warsame, Mohamed Yusuf; Wais, Muna Awil; Diggle, Emma; McGowan, Catherine R; +8 more... Satzke, Catherine; Mulholland, Kim; Egeh, Mohamed Mohamoud; Hassan, Mukhtar Muhumed; Hergeeye, Mohamed Abdi; Eggo, Rosalind M; Checchi, Francesco; Flasche, Stefan; (2022) Social contacts and other risk factors for respiratory infections among internally displaced people in Somaliland. Epidemics, 41. p. 100625. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2022.100625

Bhaskaran, Krishnan; Bacon, Sebastian; Evans, Stephen Jw; Bates, Chris J; Rentsch, Christopher T; MacKenna, Brian; Tomlinson, Laurie; Walker, Alex J; Schultze, Anna; Morton, Caroline E; +17 more... Grint, Daniel; Mehrkar, Amir; Eggo, Rosalind M; Inglesby, Peter; Douglas, Ian J; McDonald, Helen I; Cockburn, Jonathan; Williamson, Elizabeth J; Evans, David; Curtis, Helen J; Hulme, William J; Parry, John; Hester, Frank; Harper, Sam; Spiegelhalter, David; Smeeth, Liam; Goldacre, Ben; (2021) Factors associated with deaths due to COVID-19 versus other causes: population-based cohort analysis of UK primary care data and linked national death registrations within the OpenSAFELY platform. The Lancet regional health. Europe, 6. 100109-. ISSN 2666-7762 DOI: https://doi.org/10.1016/j.lanepe.2021.100109

Bhaskaran, Krishnan; Rentsch, Christopher T; MacKenna, Brian; Schultze, Anna; Mehrkar, Amir; Bates, Chris J; Eggo, Rosalind M; Morton, Caroline E; Bacon, Sebastian CJ; Inglesby, Peter; +15 more... Doughlas, Ian J; Walker, Alex J; McDonald, Helen; Cockburn, Jonathan; Williamson, Elizabeth J; Evans, David; Forbes, Harriet J; Curtis, Helen J; Hulme, William J; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; (2021) HIV infection and COVID-19 death: a population-based cohort analysis of UK primary care data and linked national death registrations within the OpenSAFELY platform. LANCET HIV, 8 (1). e24-e32. ISSN 2352-3018 DOI: https://doi.org/10.1016/S2352-3018(20)30305-2

Clifford, Samuel; Quilty, Billy J; Russell, Timothy W; Liu, Yang; Chan, Yung-Wai D; Pearson, Carl AB; Eggo, Rosalind M; Endo, Akira; CMMID COVID-19 Working Group; Flasche, Stefan; +2 more... Edmunds, W John; Centre for Mathematical Modelling of Infectious Diseases (CMMID); CMMID COVID-19 Working Group, Centre for Mathematical Modelling of Infectious Diseases (CMMID); (2021) Strategies to reduce the risk of SARS-CoV-2 importation from international travellers: modelling estimations for the United Kingdom, July 2020. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 26 (39). ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2021.26.39.2001440

Curtis, Helen J; Inglesby, Peter; Morton, Caroline E; MacKenna, Brian; Green, Amelia; Hulme, William; Walker, Alex J; Morley, Jessica; Mehrkar, Amir; Bacon, Seb; +36 more... Hickman, George; Bates, Chris; Croker, Richard; Evans, David; Ward, Tom; Cockburn, Jonathan; Davy, Simon; Bhaskaran, Krishnan; Schultze, Anna; Rentsch, Christopher T; Williamson, Elizabeth J; Rowan, Anna; Fisher, Louis; McDonald, Helen I; Tomlinson, Laurie; Mathur, Rohini; Drysdale, Henry; Eggo, Rosalind M; Wing, Kevin; Wong, Angel Ys; Forbes, Harriet; Parry, John; Hester, Frank; Harper, Sam; O'Hanlon, Shaun; Eavis, Alex; Jarvis, Richard; Avramov, Dima; Griffiths, Paul; Fowles, Aaron; Parkes, Nasreen; Douglas, Ian J; Evans, Stephen Jw; Smeeth, Liam; Goldacre, Ben; (The OpenSAFELY Collaborative); (The OpenSAFELY Collaborative); (2021) Trends and clinical characteristics of COVID-19 vaccine recipients: a federated analysis of 57.9 million patients’ primary care records in situ using OpenSAFELY. Br J Gen Pract, 72 (714). e51-e62. ISSN 0960-1643 DOI: https://doi.org/10.3399/BJGP.2021.0376

Curtis, Helen J; MacKenna, Brian; Croker, Richard; Inglesby, Peter; Walker, Alex J; Morley, Jessica; Mehrkar, Amir; Morton, Caroline E; Bacon, Seb; Hickman, George; +26 more... Bates, Chris; Evans, David; Ward, Tom; Cockburn, Jonathan; Davy, Simon; Bhaskaran, Krishnan; Schultze, Anna; Rentsch, Christopher T; Williamson, Elizabeth J; Hulme, William J; McDonald, Helen I; Tomlinson, Laurie; Mathur, Rohini; Drysdale, Henry; Eggo, Rosalind M; Wing, Kevin; Wong, Angel Ys; Forbes, Harriet; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Douglas, Ian J; Smeeth, Liam; Goldacre, Ben; (The OpenSAFELY Collaborative); The OpenSAFELY Collaborative; (2021) OpenSAFELY NHS Service Restoration Observatory 1: primary care clinical activity in England during the first wave of COVID-19. The British journal of general practice : the journal of the Royal College of General Practitioners, 72 (714). e63-e74. ISSN 0960-1643 DOI: https://doi.org/10.3399/BJGP.2021.0380

Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; +15 more... Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; CMMID COVID-19 Working Group; COVID-19 Genomics UK (COG-UK) Consortium; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John; (2021) Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. Science (New York, N.Y.), 372 (6538). 149-+. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.abg3055

Eggo, Rosalind M; Dawa, Jeanette; Kucharski, Adam J; Cucunuba, Zulma M; (2021) The importance of local context in COVID-19 models. Nature Computational Science, 1 (1). pp. 6-8. ISSN 2662-8457 DOI: https://doi.org/10.1038/s43588-020-00014-7

Enria, Luisa; Waterlow, Naomi; Rogers, Nina Trivedy; Brindle, Hannah; Lal, Sham; Eggo, Rosalind M; Lees, Shelley; Roberts, Chrissy H; (2021) Trust and transparency in times of crisis: Results from an online survey during the first wave (April 2020) of the COVID-19 epidemic in the UK. PLoS One, 16 (2). e0239247-. DOI: https://doi.org/10.1371/journal.pone.0239247

Forbes, Harriet; Morton, Caroline E; Bacon, Seb; McDonald, Helen I; Minassian, Caroline; Brown, Jeremy P; Rentsch, Christopher T; Mathur, Rohini; Schultze, Anna; DeVito, Nicholas J; +25 more... MacKenna, Brian; Hulme, William J; Croker, Richard; Walker, Alex J; Williamson, Elizabeth J; Bates, Chris; Mehrkar, Amir; Curtis, Helen J; Evans, David; Wing, Kevin; Inglesby, Peter; Drysdale, Henry; Wong, Angel YS; Cockburn, Jonathan; McManus, Robert; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Smeeth, Liam; Evans, Stephen JW; Bhaskaran, Krishnan; Eggo, Rosalind M; Goldacre, Ben; Tomlinson, Laurie A; (2021) Association between living with children and outcomes from covid-19: OpenSAFELY cohort study of 12 million adults in England. BMJ: British Medical Journal, 372. n628-. ISSN 1759-2151 DOI: https://doi.org/10.1136/bmj.n628

Gaskell, Katherine M; Johnson, Marina; Gould, Victoria; Hunt, Adam; Stone, Neil RH; Waites, William; Kasstan, Ben; Chantler, Tracey; Lal, Sham; Roberts, Chrissy H; +3 more... Goldblatt, David; Eggo, Rosalind M; Marks, Michael; (2021) Extremely high SARS-CoV-2 seroprevalence in a strictly-Orthodox Jewish community in the UK. medRxiv preprint. ISSN 1468-5833 DOI: https://doi.org/10.1101/2021.02.01.21250839

Gaskell, Katherine M; Johnson, Marina; Gould, Victoria; Hunt, Adam; Stone, Neil Rh; Waites, William; Kasstan, Ben; Chantler, Tracey; Lal, Sham; Roberts, Chrissy H; +3 more... Goldblatt, David; Eggo, Rosalind M; Marks, Michael; (2021) SARS-CoV-2 seroprevalence in a strictly-Orthodox Jewish community in the UK: A retrospective cohort study. The Lancet Regional Health - Europe, 6. 100127-. ISSN 2666-7762 DOI: https://doi.org/10.1016/j.lanepe.2021.100127

Gibbs, Hamish; Nightingale, Emily; Liu, Yang; Cheshire, James; Danon, Leon; Smeeth, Liam; Pearson, Carl AB; Grundy, Chris; LSHTM CMMID COVID-19 working group; Kucharski, Adam J; +1 more... Eggo, Rosalind M; LSHTM CMMID COVID-19 working group; (2021) Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19. PLoS computational biology, 17 (7). e1009162-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1009162

Grint, Daniel J; Wing, Kevin; Houlihan, Catherine; Gibbs, Hamish P; Evans, Stephen JW; Williamson, Elizabeth; McDonald, Helen I; Bhaskaran, Krishnan; Evans, David; Walker, Alex J; +27 more... Hickman, George; Nightingale, Emily; Schultze, Anna; Rentsch, Christopher T; Bates, Chris; Cockburn, Jonathan; Curtis, Helen J; Morton, Caroline E; Bacon, Sebastian; Davy, Simon; Wong, Angel YS; Mehrkar, Amir; Tomlinson, Laurie; Douglas, Ian J; Mathur, Rohini; MacKenna, Brian; Ingelsby, Peter; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; DeVito, Nicholas J; Hulme, Will; Tazare, John; Smeeth, Liam; Goldacre, Ben; Eggo, Rosalind M; (2021) Severity of Severe Acute Respiratory System Coronavirus 2 (SARS-CoV-2) Alpha Variant (B.1.1.7) in England. Clinical infectious diseases, 75 (1). e1120-e1127. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciab754

Grint, Daniel J; Wing, Kevin; Williamson, Elizabeth; McDonald, Helen I; Bhaskaran, Krishnan; Evans, David; Evans, Stephen Jw; Walker, Alex J; Hickman, George; Nightingale, Emily; +26 more... Schultze, Anna; Rentsch, Christopher T; Bates, Chris; Cockburn, Jonathan; Curtis, Helen J; Morton, Caroline E; Bacon, Sebastian; Davy, Simon; Wong, Angel Ys; Mehrkar, Amir; Tomlinson, Laurie; Douglas, Ian J; Mathur, Rohini; Blomquist, Paula; MacKenna, Brian; Ingelsby, Peter; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; DeVito, Nicholas J; Hulme, Will; Tazare, John; Goldacre, Ben; Smeeth, Liam; Eggo, Rosalind M; (2021) Case fatality risk of the SARS-CoV-2 variant of concern B.1.1.7 in England, 16 November to 5 February. Eurosurveillance, 26 (11). pp. 10-15. ISSN 1025-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2021.26.11.2100256

Jombart, Thibaut; Ghozzi, Stéphane; Schumacher, Dirk; Taylor, Timothy J; Leclerc, Quentin J; Jit, Mark; Flasche, Stefan; Greaves, Felix; Ward, Tom; Eggo, Rosalind M; +7 more... Nightingale, Emily; Meakin, Sophie; Brady, Oliver J; Centre for Mathematical Modelling of Infectious Diseases COVID-1; Medley, Graham F; Höhle, Michael; Edmunds, W John; Centre for Mathematical Modelling; (2021) Real-time monitoring of COVID-19 dynamics using automated trend fitting and anomaly detection. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 376 (1829). 20200266-. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2020.0266

Kasstan, Ben; Mounier-Jack, Sandra; Letley, Louise; Gaskell, Katherine M; Roberts, Chrissy H; Stone, Neil RH; Lal, Sham; Eggo, Rosalind M; Marks, Michael; Chantler, Tracey; (2021) Localising Vaccination Services: Qualitative Insights on an Orthodox Jewish Collaboration with Public health during the UK coronavirus Vaccine Programme. DOI: https://doi.org/10.1101/2021.09.10.21263372 (Submitted)

Kovacevic, Aleksandra; Eggo, Rosalind M; Baguelin, Marc; Domenech de Cellès, Matthieu; Opatowski, Lulla; (2021) The Impact of Cocirculating Pathogens on Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)/Coronavirus Disease 2019 Surveillance: How Concurrent Epidemics May Introduce Bias and Decrease the Observed SARS-CoV-2 Percentage Positivity. The Journal of Infectious Diseases, 225 (2). pp. 199-207. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiab459

Mathur, Rohini; Rentsch, Christopher T; Morton, Caroline E; Hulme, William J; Schultze, Anna; MacKenna, Brian; Eggo, Rosalind M; Bhaskaran, Krishnan; Wong, Angel YS; Williamson, Elizabeth J; +27 more... Forbes, Harriet; Wing, Kevin; McDonald, Helen I; Bates, Chris; Bacon, Seb; Walker, Alex J; Evans, David; Inglesby, Peter; Mehrkar, Amir; Curtis, Helen J; DeVito, Nicholas J; Croker, Richard; Drysdale, Henry; Cockburn, Jonathan; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Tomlinson, Laurie; Evans, Stephen JW; Grieve, Richard; Harrison, David; Rowan, Kathy; Khunti, Kamlesh; Chaturvedi, Nishi; Smeeth, Liam; Goldacre, Ben; (2021) Ethnic differences in SARS-CoV-2 infection and COVID-19-related hospitalisation, intensive care unit admission, and death in 17 million adults in England: an observational cohort study using the OpenSAFELY platform. Lancet (London, England), 397 (10286). pp. 1711-1724. ISSN 0140-6736 DOI: https://doi.org/10.1016/s0140-6736(21)00634-6

OpenSAFELY Collaborative; Curtis, Helen J; MacKenna, Brian; Walker, Alex J; Croker, Richard; Mehrkar, Amir; Morton, Caroline; Bacon, Seb; Hickman, George; Inglesby, Peter; +22 more... Bates, Chris; Evans, David; Ward, Tom; Cockburn, Jonathan; Davy, Simon; Bhaskaran, Krishnan; Schultze, Anna; Rentsch, Christopher T; Williamson, Elizabeth; Hulme, William; Tomlinson, Laurie; Mathur, Rohini; Drysdale, Henry; Eggo, Rosalind M; Wong, Angel Yun; Forbes, Harriet; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian; Smeeth, Liam; Goldacre, Ben; The OpenSAFELY Collaborative; (2021) OpenSAFELY: impact of national guidance on switching anticoagulant therapy during COVID-19 pandemic. Open heart, 8 (2). e001784-e001784. ISSN 2053-3624 DOI: https://doi.org/10.1136/openhrt-2021-001784

OpenSAFELY Collaborative; Wong, Angel YS; Tomlinson, Laurie A; Brown, Jeremy P; Elson, William; Walker, Alex J; Schultze, Anna; Morton, Caroline E; Evans, David; Inglesby, Peter; +21 more... MacKenna, Brian; Bhaskaran, Krishnan; Rentsch, Christopher T; Powell, Emma; Williamson, Elizabeth; Croker, Richard; Bacon, Seb; Hulme, William; Bates, Chris; Curtis, Helen J; Mehrkar, Amir; Cockburn, Jonathan; McDonald, Helen I; Mathur, Rohini; Wing, Kevin; Forbes, Harriet; Eggo, Rosalind M; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; Douglas, Ian J; OpenSAFELY Collaborative; (2021) Association between warfarin and COVID-19-related outcomes compared with direct oral anticoagulants: population-based cohort study. Journal of hematology & oncology, 14 (1). 172-. ISSN 1756-8722 DOI: https://doi.org/10.1186/s13045-021-01185-0

Pearson, Carl AB; Bozzani, Fiammetta; Procter, Simon R; Davies, Nicholas G; Huda, Maryam; Jensen, Henning Tarp; Keogh-Brown, Marcus; Khalid, Muhammad; Sweeney, Sedona; Torres-Rueda, Sergio; +5 more... CHiL COVID-19 Working Group; CMMID COVID-19 Working Group; Eggo, Rosalind M; Vassall, Anna; Jit, Mark; CHiL COVID-19 Working Group, CMMID COVID-19 Working Group; (2021) COVID-19 vaccination in Sindh Province, Pakistan: A modelling study of health impact and cost-effectiveness. PLoS medicine, 18 (10). e1003815-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1003815

Pearson, Carl AB; Clifford, Sam; Pulliam, Juliet RC; Eggo, Rosalind M; (2021) Pre-vaccination testing could expand coverage of two-dose COVID vaccines. Wellcome Open Research, 6. p. 105. DOI: https://doi.org/10.12688/wellcomeopenres.16835.1

Pearson, Carl AB; Edmunds, W John; Hladish, Thomas J; Eggo, Rosalind M; (2021) Potential test-negative design study bias in outbreak settings: application to Ebola vaccination in Democratic Republic of Congo. International journal of epidemiology, 51 (1). pp. 265-278. ISSN 0300-5771 DOI: https://doi.org/10.1093/ije/dyab172

Prem, Kiesha; Zandvoort, Kevin van; Klepac, Petra; Eggo, Rosalind M; Davies, Nicholas G; Centre for the Mathematical Modelling of Infectious Diseases COV; Cook, Alex R; Jit, Mark; Centre for Mathematical Modelling of Infectious Diseases COV; (2021) Projecting contact matrices in 177 geographical regions: An update and comparison with empirical data for the COVID-19 era. PLoS computational biology, 17 (7). e1009098-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1009098

Roberts, Chrissy H; Brindle, Hannah; Rogers, Nina T; Eggo, Rosalind M; Enria, Luisa; Lees, Shelley; (2021) Vaccine Confidence and Hesitancy at the Start of COVID-19 Vaccine Deployment in the UK: An Embedded Mixed-Methods Study. Frontiers in public health, 9. 745630-. ISSN 2296-2565 DOI: https://doi.org/10.3389/fpubh.2021.745630

Saadi, Nuru; Chi, Y-Ling; Ghosh, Srobana; Eggo, Rosalind M; McCarthy, Ciara V; Quaife, Matthew; Dawa, Jeanette; Jit, Mark; Vassall, Anna; (2021) Models of COVID-19 vaccine prioritisation: a systematic literature search and narrative review. BMC medicine, 19 (1). 318-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-021-02190-3

Saadi, Nuru; Chi, Y-Ling; Ghosh, Srobana; Eggo, Rosalind M; McCarthy, Ciara; Quaife, Matthew; Dawa, Jeanette; Jit, Mark; Vassall, Anna; (2021) Models of COVID-19 vaccine prioritisation: a systematic literature search and narrative review. medRxiv. DOI: https://doi.org/10.1101/2021.06.21.21259104

Schultze, Anna; Bates, Chris; Cockburn, Jonathan; MacKenna, Brian; Nightingale, Emily; Curtis, Helen J; Hulme, William J; Morton, Caroline E; Croker, Richard; Bacon, Seb; +29 more... McDonald, Helen I; Rentsch, Christopher T; Bhaskaran, Krishnan; Mathur, Rohini; Tomlinson, Laurie A; Williamson, Elizabeth J; Forbes, Harriet; Tazare, John; Grint, Daniel J; Walker, Alex J; Inglesby, Peter; DeVito, Nicholas J; Mehrkar, Amir; Hickman, George; Davy, Simon; Ward, Tom; Fisher, Louis; Evans, David; Wing, Kevin; Wong, Angel Ys; McManus, Robert; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Douglas, Ian J; Smeeth, Liam; Eggo, Rosalind M; Goldacre, Ben; (2021) Identifying Care Home Residents in Electronic Health Records - An OpenSAFELY Short Data Report. Wellcome open research, 6. 90-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.16737.1

Sweeney, Sedona; Capeding, Theo Prudencio Juhani; Eggo, Rosalind; Huda, Maryam; Jit, Mark; Mudzengi, Don; Naylor, Nichola R; Procter, Simon; Quaife, Matthew; Serebryakova, Lela; +4 more... Torres-Rueda, Sergio; Vargas, Veronica; CHiL COVID Working Group; Vassall, Anna; CHiL COVID Working Group; (2021) Exploring equity in health and poverty impacts of control measures for SARS-CoV-2 in six countries. BMJ global health, 6 (5). e005521-e005521. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2021-005521

Tazare, John; Walker, Alex J; Tomlinson, Laurie; Hickman, George; Rentsch, Christopher T; Williamson, Elizabeth J; Bhaskaran, Krishnan; Evans, David; Wing, Kevin; Mathur, Rohini; +30 more... Wong, Angel YS; Schultze, Anna; Bacon, Seb; Bates, Chris; Morton, Caroline E; Curtis, Helen J; Nightingale, Emily; McDonald, Helen I; Mehrkar, Amir; Inglesby, Peter; Davy, Simon; MacKenna, Brian; Cockburn, Jonathan; Hulme, William J; Warren-Gash, Charlotte; Bhate, Ketaki; Nitsch, Dorothea; Powell, Emma; Mulick, Amy; Forbes, Harriet; Minassian, Caroline; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Eggo, Rosalind M; Evans, Stephen JW; Smeeth, Liam; Douglas, Ian J; Goldacre, Ben; (2021) Rates of serious clinical outcomes in survivors of hospitalisation with COVID-19: a descriptive cohort study within the OpenSAFELY platform. MedRxiv. DOI: https://doi.org/10.1101/2021.01.22.21250304

Torres-Rueda, Sergio; Sweeney, Sedona; Bozzani, Fiammetta; Naylor, Nichola R; Baker, Tim; Pearson, Carl; Eggo, Rosalind; Procter, Simon R; Davies, Nicholas; Quaife, Matthew; +11 more... Kitson, Nichola; Keogh-Brown, Marcus R; Jensen, Henning Tarp; Saadi, Nuru; Khan, Mishal; Huda, Maryam; Kairu, Angela; Zaidi, Raza; Barasa, Edwine; Jit, Mark; Vassall, Anna; (2021) Stark choices: exploring health sector costs of policy responses to COVID-19 in low-income and middle-income countries. BMJ Global Health, 6 (12). e005759-e005759. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2021-005759

Walker, Alex J; MacKenna, Brian; Inglesby, Peter; Tomlinson, Laurie; Rentsch, Christopher T; Curtis, Helen J; Morton, Caroline E; Morley, Jessica; Mehrkar, Amir; Bacon, Seb; +31 more... Hickman, George; Bates, Chris; Croker, Richard; Evans, David; Ward, Tom; Cockburn, Jonathan; Davy, Simon; Bhaskaran, Krishnan; Schultze, Anna; Williamson, Elizabeth J; Hulme, William J; McDonald, Helen I; Mathur, Rohini; Eggo, Rosalind M; Wing, Kevin; Wong, Angel Ys; Forbes, Harriet; Tazare, John; Parry, John; Hester, Frank; Harper, Sam; O'Hanlon, Shaun; Eavis, Alex; Jarvis, Richard; Avramov, Dima; Griffiths, Paul; Fowles, Aaron; Parkes, Nasreen; Douglas, Ian J; Evans, Stephen Jw; (The OpenSAFELY Collaborative); (2021) Clinical coding of long COVID in English primary care: a federated analysis of 58 million patient records in situ using OpenSAFELY. British Journal of General Practice, 71 (712). e806-e814. ISSN 0960-1643 DOI: https://doi.org/10.3399/BJGP.2021.0301

Walker, Alex J; Tazare, John; Hickman, George; Rentsch, Christopher T; Williamson, Elizabeth J; Bhaskaran, Krishnan; Evans, David; Wing, Kevin; Mathur, Rohini; Wong, Angel YS; +24 more... Schultze, Anna; Bacon, Sebastian CJ; Bates, Chris; Morton, Caroline E; Curtis, Helen J; Nightingale, Emily; McDonald, Helen I; Mehrkar, Amir; Inglesby, Peter; MacKenna, Brian; Cockburn, Jonathan; Hulme, William J; Forbes, Harriet; Minassian, Caroline; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Eggo, Rosalind M; Evans, Stephen JW; Smeeth, Liam; Douglas, Ian J; Tomlinson, Laurie; Goldacre, Ben; (2021) Changes in the rate of cardiometabolic and pulmonary events during the COVID-19 pandemic. medRxiv preprint. DOI: https://doi.org/10.1101/2021.02.17.21251812

Walker, Jemma L; Grint, Daniel J; Strongman, Helen; Eggo, Rosalind M; Peppa, Maria; Minassian, Caroline; Mansfield, Kathryn E; Rentsch, Christopher T; Douglas, Ian J; Mathur, Rohini; +8 more... Wong, Angel YS; Quint, Jennifer K; Andrews, Nick; Bernal, Jamie Lopez; Scott, J Anthony; Ramsay, Mary; Smeeth, Liam; McDonald, Helen I; (2021) UK prevalence of underlying conditions which increase the risk of severe COVID-19 disease: a point prevalence study using electronic health records. BMC public health, 21 (1). 484-. ISSN 1471-2458 DOI: https://doi.org/10.1186/s12889-021-10427-2

Waterlow, Naomi R; Flasche, Stefan; Minter, Amanda; Eggo, Rosalind M; (2021) Competition between RSV and influenza: Limits of modelling inference from surveillance data. Epidemics, 35. 100460-. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2021.100460

Waterlow, Naomi R; van Leeuwen, Edwin; Davies, Nicholas G; CMMID COVID-19 Working Group; Flasche, Stefan; Eggo, Rosalind M; CMMID COVID-19 Working Group; (2021) How immunity from and interaction with seasonal coronaviruses can shape SARS-CoV-2 epidemiology. Proceedings of the National Academy of Sciences of the United States of America, 118 (49). e2108395118-. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.2108395118

Williamson, Elizabeth J; McDonald, Helen I; Bhaskaran, Krishnan; Walker, Alex J; Bacon, Sebastian; Davy, Simon; Schultze, Anna; Tomlinson, Laurie; Bates, Chris; Ramsay, Mary; +26 more... Curtis, Helen J; Forbes, Harriet; Wing, Kevin; Minassian, Caroline; Tazare, John; Morton, Caroline E; Nightingale, Emily; Mehrkar, Amir; Evans, Dave; Inglesby, Peter; MacKenna, Brian; Cockburn, Jonathan; Rentsch, Christopher T; Mathur, Rohini; Wong, Angel YS; Eggo, Rosalind M; Hulme, William; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; Kuper, Hannah; (2021) Risks of covid-19 hospital admission and death for people with learning disability: population based cohort study using the OpenSAFELY platform. BMJ (Clinical research ed.), 374. n1592-. ISSN 0959-8138 DOI: https://doi.org/10.1136/bmj.n1592

Williamson, Elizabeth J; McDonald, Helen I; Bhaskaran, Krishnan; Walker, Alex J; Bacon, Sebastian; Davy, Simon; Schultze, Anna; Tomlinson, Laurie; Bates, Chris; Ramsay, Mary; +26 more... Curtis, Helen J; Forbes, Harriet; Wing, Kevin; Minassian, Caroline; Tazare, John; Morton, Caroline E; Nightingale, Emily; Mehrkar, Amir; Evans, Dave; Inglesby, Peter; MacKenna, Brian; Cockburn, Jonathan; Rentsch, Christopher T; Mathur, Rohini; Wong, Angel YS; Eggo, Rosalind M; Hulme, Will; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; Kuper, Hannah; (2021) OpenSAFELY: Risks of COVID-19 hospital admission and death for people with learning disabilities - a cohort study. medRxiv preprint. DOI: https://doi.org/10.1101/2021.03.08.21253112

Williamson, Elizabeth J; Tazare, John; Bhaskaran, Krishnan; McDonald, Helen I; Walker, Alex J; Tomlinson, Laurie; Wing, Kevin; Bacon, Sebastian; Bates, Chris; Curtis, Helen J; +34 more... Forbes, Harriet; Minassian, Caroline; Morton, Caroline E; Nightingale, Emily; Mehrkar, Amir; Evans, Dave; Nicholson, Brian D; Leon, Dave; Inglesby, Peter; MacKenna, Brian; Davies, Nicholas G; DeVito, Nicholas J; Drysdale, Henry; Cockburn, Jonathan; Hulme, Will; Morley, Jess; Douglas, Ian; Rentsch, Christopher T; Mathur, Rohini; Wong, Angel; Schultze, Anna; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Grieve, Richard; Harrison, David A; Steyerberg, Ewout W; Eggo, Rosalind M; Diaz-Ordaz, Karla; Keogh, Ruth; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; (2021) Predicting COVID-19 related death using the OpenSAFELY platform. medRxiv preprint. DOI: https://doi.org/10.1101/2021.02.25.21252433

Wong, Angel Ys; MacKenna, Brian; Morton, Caroline E; Schultze, Anna; Walker, Alex J; Bhaskaran, Krishnan; Brown, Jeremy P; Rentsch, Christopher T; Williamson, Elizabeth; Drysdale, Henry; +23 more... Croker, Richard; Bacon, Seb; Hulme, William; Bates, Chris; Curtis, Helen J; Mehrkar, Amir; Evans, David; Inglesby, Peter; Cockburn, Jonathan; McDonald, Helen I; Tomlinson, Laurie; Mathur, Rohini; Wing, Kevin; Forbes, Harriet; Eggo, Rosalind M; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Smeeth, Liam; Douglas, Ian J; Goldacre, Ben; OpenSAFELY Collaborative; (2021) Use of non-steroidal anti-inflammatory drugs and risk of death from COVID-19: an OpenSAFELY cohort analysis based on two cohorts. Annals of the rheumatic diseases, 80 (7). pp. 943-951. ISSN 0003-4967 DOI: https://doi.org/10.1136/annrheumdis-2020-219517

Abbott, Sam; Hellewell, Joel; Thompson, Robin N; Sherratt, Katharine; Gibbs, Hamish P; Bosse, Nikos I; Munday, James D; Meakin, Sophie; Doughty, Emma L; Chun, June Young; +11 more... Chan, Yung-Wai Desmond; Finger, Flavio; Campbell, Paul; Endo, Akira; Pearson, Carl AB; Gimma, Amy; Russell, Tim; Flasche, Stefan; Kucharski, Adam J; Eggo, Rosalind M; Funk, Sebastian; (2020) Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts. Wellcome Open Research, 5. p. 112. DOI: https://doi.org/10.12688/wellcomeopenres.16006.1

Abbott, Sam; Hellewell, Joel; Thompson, Robin N; Sherratt, Katharine; Gibbs, Hamish P; Bosse, Nikos I; Munday, James D; Meakin, Sophie; Doughty, Emma L; Chun, June Young; +11 more... Chan, Yung-Wai Desmond; Finger, Flavio; Campbell, Paul; Endo, Akira; Pearson, Carl AB; Gimma, Amy; Russell, Tim; Flasche, Stefan; Kucharski, Adam J; Eggo, Rosalind M; Funk, Sebastian; (2020) Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts. Wellcome Open Research, 5. p. 112. DOI: https://doi.org/10.12688/wellcomeopenres.16006.2

Caudill, Victoria R; Qin, Sarina; Winstead, Ryan; Kaur, Jasmeen; Tisthammer, Kaho; Pineda, E Geo; Solis, Caroline; Cobey, Sarah; Bedford, Trevor; Carja, Oana; +46 more... Eggo, Rosalind M; Koelle, Katia; Lythgoe, Katrina; Regoes, Roland; Roy, Scott; Allen, Nicole; Aviles, Milo; Baker, Brittany A; Bauer, William; Bermudez, Shannel; Carlson, Corey; Castellanos, Edgar; Catalan, Francisca L; Chemel, Angeline Katia; Elliot, Jacob; Evans, Dwayne; Fiutek, Natalie; Fryer, Emily; Goodfellow, Samuel Melvin; Hecht, Mordecai; Hopp, Kellen; Hopson, E Deshawn; Jaberi, Amirhossein; Kinney, Christen; Lao, Derek; Le, Adrienne; Lo, Jacky; Lopez, Alejandro G; López, Andrea; Lorenzo, Fernando G; Luu, Gordon T; Mahoney, Andrew R; Melton, Rebecca L; Nascimento, Gabriela Do; Pradhananga, Anjani; Rodrigues, Nicole S; Shieh, Annie; Sims, Jasmine; Singh, Rima; Sulaeman, Hasan; Thu, Ricky; Tran, Krystal; Tran, Livia; Winters, Elizabeth J; Wong, Albert; Pennings, Pleuni S; (2020) CpG-creating mutations are costly in many human viruses. EVOLUTIONARY ECOLOGY, 34 (3). pp. 339-359. ISSN 0269-7653 DOI: https://doi.org/10.1007/s10682-020-10039-z

Clark, Andrew; Jit, Mark; Warren-Gash, Charlotte; Guthrie, Bruce; Wang, Harry HX; Mercer, Stewart W; Sanderson, Colin; McKee, Martin; Troeger, Christopher; Ong, Kanyin I; +6 more... Checchi, Francesco; Perel, Pablo; Joseph, Sarah; Gibbs, Hamish P; Banerjee, Amitava; Eggo, Rosalind M; (2020) How many are at increased risk of severe COVID-19 disease? Rapid global, regional and national estimates for 2020. medRxiv. 2020.04.18.20064774-. DOI: https://doi.org/10.1101/2020.04.18.20064774

Clark, Andrew; Jit, Mark; Warren-Gash, Charlotte; Guthrie, Bruce; Wang, Harry HX; Mercer, Stewart W; Sanderson, Colin; McKee, Martin; Troeger, Christopher; Ong, Kanyin L; +7 more... Checchi, Francesco; Perel, Pablo; Joseph, Sarah; Gibbs, Hamish P; Banerjee, Amitava; Eggo, Rosalind M; Centre for the Mathematical Modelling of Infectious Diseases COV; (2020) Global, regional, and national estimates of the population at increased risk of severe COVID-19 due to underlying health conditions in 2020: a modelling study. The Lancet. Global Health, 8 (8). e1003-e1017. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(20)30264-3

Clifford, Samuel; Pearson, Carl AB; Klepac, Petra; Van Zandvoort, Kevin; Quilty, Billy J; CMMID COVID-19 working group; Eggo, Rosalind M; Flasche, Stefan; (2020) Effectiveness of interventions targeting air travellers for delaying local outbreaks of SARS-CoV-2. JOURNAL OF TRAVEL MEDICINE, 27 (5). taaa068-. ISSN 1195-1982 DOI: https://doi.org/10.1093/jtm/taaa068

Curtis, Helen J; MacKenna, Brian; Walker, Alex J; Croker, Richard; Mehrkar, Amir; Morton, Caroline E; Bacon, Seb; Hickman, George; Inglesby, Peter; Bates, Chris; +24 more... Evans, David; Ward, Tom; Cockburn, Jonathan; Davy, Simon; Bhaskaran, Krishnan; Schultze, Anna; Rentsch, Christopher T; Williamson, Elizabeth; Hulme, William; McDonald, Helen I; Tomlinson, Laurie; Mathur, Rohini; Drysdale, Henry; Eggo, Rosalind M; Wing, Kevin; Wong, Angel YS; Forbes, Harriet; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen JW; Douglas, Ian J; Smeeth, Liam; Goldacre, Ben; (2020) OpenSAFELY: impact of national guidance on switching from warfarin to direct oral anticoagulants (DOACs) in early phase of COVID-19 pandemic in England. MedRxiv. DOI: https://doi.org/10.1101/2020.12.03.20243535

Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; +13 more... Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John; (2020) Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. MedRxiv. DOI: https://doi.org/10.1101/2020.12.24.20248822 Item availability may be restricted.

Davies, Nicholas G; Kucharski, Adam J; Eggo, Rosalind M; Gimma, Amy; Edmunds, W John; (2020) The effect of non-pharmaceutical interventions on COVID-19 cases, deaths and demand for hospital services in the UK: a modelling study. MedRxiv. DOI: https://doi.org/10.1101/2020.04.01.20049908 Item availability may be restricted.

Davies, Nicholas G; Kucharski, Adam J; Eggo, Rosalind M; Gimma, Amy; Edmunds, W John; Centre for the Mathematical Modelling of Infectious Diseases COV; (2020) Effects of non-pharmaceutical interventions on COVID-19 cases, deaths, and demand for hospital services in the UK: a modelling study. The Lancet. Public health, 5 (7). e375-e385. ISSN 2468-2667 DOI: https://doi.org/10.1016/S2468-2667(20)30133-X

Davies, Nicholas; Sweeney, Sedona; Torres-Rueda, Sergio; Bozzani, Fiammetta; Kitson, Nichola; Barasa, Edwine; Procter, Simon R; Quaife, Matthew; Eggo, Rosalind M; Vassall, Anna; +1 more... Jit, Mark; (2020) The impact of Coronavirus disease 2019 (COVID-19) on health systems and household resources in Africa and South Asia. MedRxiv. DOI: https://doi.org/10.1101/2020.05.06.20092734

Dawa, Jeanette; Emukule, Gideon O; Barasa, Edwine; Widdowson, Marc Alain; Anzala, Omu; van Leeuwen, Edwin; Baguelin, Marc; Chaves, Sandra S; Eggo, Rosalind M; (2020) Seasonal influenza vaccination in Kenya: an economic evaluation using dynamic transmission modelling. BMC MEDICINE, 18 (1). 223-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01687-7

Eggo, Rosalind M; Hellewell, Joel; Funk, Sebastian; (2020) Feasibility of controlling COVID-19 - Authors' reply. The Lancet. Global health, 8 (6). e775-. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(20)30128-5

Emery, Jon C; Russell, Timothy W; Liu, Yang; Hellewell, Joel; Pearson, Carl Ab; CMMID COVID-19 Working Group; Knight, Gwenan M; Eggo, Rosalind M; Kucharski, Adam J; Funk, Sebastian; +2 more... Flasche, Stefan; Houben, Rein Mgj; (2020) The contribution of asymptomatic SARS-CoV-2 infections to transmission on the Diamond Princess cruise ship. eLife, 9. e58699-. DOI: https://doi.org/10.7554/eLife.58699

Enria, Luisa; Waterlow, Naomi; Rogers, Nina T; Brindle, Hannah; Lal, Sham; Eggo, Rosalind M; Lees, Shelley; Roberts, Chrissy H; (2020) Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK. medRxiv preprint. ISSN 1468-5833 DOI: https://doi.org/10.1101/2020.09.01.20183822

Forbes, Harriet; Morton, Caroline E; Bacon, Seb; McDonald, Helen I; Minassian, Caroline; Brown, Jeremy P; Rentsch, Christopher T; Mathur, Rohini; Schultze, Anna; DeVito, Nicholas J; +25 more... MacKenna, Brian; Hulme, William J; Croker, Richard; Walker, Alex J; Williamson, Elizabeth J; Bates, Chris; Mehrkar, Amir; Curtis, Helen J; Evans, David; Wing, Kevin; Inglesby, Peter; Drysdale, Henry; Wong, Angel YS; Cockburn, Jonathan; McManus, Robert; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Smeeth, Liam; Evans, Stephen JW; Bhaskaran, Krishnan; Eggo, Rosalind M; Goldacre, Ben; Tomlinson, Laurie A; (2020) Association between living with children and outcomes from COVID-19: an OpenSAFELY cohort study of 12 million adults in England. medRxiv preprint. DOI: https://doi.org/10.1101/2020.11.01.20222315

Funk, S; Abbott, S; Atkins, BD; Baguelin, M; Baillie, JK; Birrell, P; Blake, J; Bosse, NI; Burton, J; Carruthers, J; +37 more... Davies, NG; De Angelis, D; Dyson, L; Edmunds, WJ; Eggo, RM; Ferguson, NM; Gaythorpe, K; Gorsich, E; Guyver-Fletcher, G; Hellewell, J; Hill, EM; Holmes, A; House, TA; Jewell, C; Jit, M; Jombart, T; Joshi, I; Keeling, MJ; Kendall, E; Knock, ES; Kucharski, AJ; Lythgoe, KA; Meakin, SR; Munday, JD; Openshaw, PJM; Overton, CE; Pagani, F; Pearson, J; Perez-Guzman, PN; Pellis, L; Scarabel, F; Semple, MG; Sherratt, K; Tang, M; Tildesley, MJ; Van Leeuwen, E; Whittles, LK; (2020) Short-term forecasts to inform the response to the Covid-19 epidemic in the UK. medRxiv preprint - BMJ Yale. ISSN 1468-5833 DOI: https://doi.org/10.1101/2020.11.11.20220962

Gibbs, Hamish; Liu, Yang; Pearson, Carl AB; Jarvis, Christopher I; Grundy, Chris; Quilty, Billy J; Diamond, Charlie; LSHTM CMMID COVID-19 working group; Eggo, Rosalind M; (2020) Changing travel patterns in China during the early stages of the COVID-19 pandemic. NATURE COMMUNICATIONS, 11 (1). 5012-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-020-18783-0

Gibbs, Hamish; Nightingale, Emily; Liu, Yang; Cheshire, James; Danon, Leon; Smeeth, Liam; Pearson, Carl AB; Grundy, Chris; Kucharski, Adam J; Eggo, Rosalind M; (2020) Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19. MedRxiv. DOI: https://doi.org/10.1101/2020.10.26.20219550

Hellewell, Joel; Abbott, Sam; Gimma, Amy; Bosse, Nikos I; Jarvis, Christopher I; Russell, Timothy W; Munday, James D; Kucharski, Adam J; Edmunds, W John; Centre for the Mathematical Modelling of Infectious Diseases COV; +2 more... Funk, Sebastian; Eggo, Rosalind M; (2020) Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. The Lancet. Global health, 8 (4). e488-e496. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(20)30074-7

Hellewell, Joel; Abbott, Sam; Gimma, Amy; Bosse, Nikos I; Jarvis, Christopher I; Russell, Timothy W; Munday, James D; Kucharski, Adam J; Edmunds, W John; Funk, Sebastian; +1 more... Eggo, Rosalind M; (2020) Feasibility of controlling 2019-nCoV outbreaks by isolation of cases and contacts. DOI: https://doi.org/10.1101/2020.02.08.20021162

Hellewell, Joel; Funk, Sebastian; Eggo, Rosalind M; (2020) On the fallibility of simulation models in informing pandemic responses - Authors' reply. LANCET GLOBAL HEALTH, 8 (6). e778-e779. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(20)30217-5

Jombart, Thibaut; van Zandvoort, Kevin; Russell, Timothy W; Jarvis, Christopher I; Gimma, Amy; Abbott, Sam; Clifford, Sam; Funk, Sebastian; Gibbs, Hamish; Liu, Yang; +6 more... Pearson, Carl AB; Bosse, Nikos I; Centre for the Mathematical Modelling of Infectious Diseases COV; Eggo, Rosalind M; Kucharski, Adam J; Edmunds, W John; Centre for the Mathematical Modelling of Infectious Diseases COV; (2020) Inferring the number of COVID-19 cases from recently reported deaths. Wellcome Open Res, 5. 78-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.15786.1

Jombart, Thibaut; van Zandvoort, Kevin; Russell, Timothy W; Jarvis, Christopher I; Gimma, Amy; Abbott, Sam; Clifford, Sam; Funk, Sebastian; Gibbs, Hamish; Liu, Yang; +6 more... Pearson, Carl AB; Bosse, Nikos I; Centre for the Mathematical Modelling of Infectious Diseases COV; Eggo, Rosalind M; Kucharski, Adam J; Edmunds, W John; (2020) Inferring the number of COVID-19 cases from recently reported deaths. medRxiv. DOI: https://doi.org/10.1101/2020.03.10.20033761

Jombart, Thibaut; van Zandvoort, Kevin; Russell, Timothy W; Jarvis, Christopher I; Gimma, Amy; Abbott, Sam; Clifford, Sam; Funk, Sebastian; Gibbs, Hamish; Liu, Yang; +6 more... Pearson, Carl AB; Bosse, Nikos I; Centre for the Mathematical Modelling of Infectious Diseases COV; Eggo, Rosalind M; Kucharski, Adam J; Edmunds, W John; (2020) Inferring the number of COVID-19 cases from recently reported deaths. Wellcome open research, 5. 78-. DOI: https://doi.org/10.12688/wellcomeopenres.15786.1

Kucharski, Adam J; Eggo, Rosalind M; (2020) Invisible spread of SARS-CoV-2 - Authors' reply. The Lancet. Infectious diseases, 20 (9). 1012-. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(20)30275-9 Full text not available from this repository.

Kucharski, Adam J; Funk, Sebastian; Eggo, Rosalind M; (2020) The COVID-19 response illustrates that traditional academic reward structures and metrics do not reflect crucial contributions to modern science. PLOS BIOLOGY, 18 (10). e3000913-. ISSN 1544-9173 DOI: https://doi.org/10.1371/journal.pbio.3000913

Kucharski, Adam J; Russell, Timothy W; Diamond, Charlie; Liu, Yang; Edmunds, John; Funk, Sebastian; Eggo, Rosalind M; (2020) Early dynamics of transmission and control of COVID-19: a mathematical modelling study. DOI: https://doi.org/10.1101/2020.01.31.20019901

Kucharski, Adam J; Russell, Timothy W; Diamond, Charlie; Liu, Yang; Edmunds, John; Funk, Sebastian; Eggo, Rosalind M; Centre for Mathematical Modelling of Infectious Diseases COVID-1; (2020) Early dynamics of transmission and control of COVID-19: a mathematical modelling study. The Lancet. Infectious diseases, 20 (5). pp. 553-558. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(20)30144-4

Liu, Yang; Eggo, Rosalind M; Kucharski, Adam J; (2020) Secondary attack rate and superspreading events for SARS-CoV-2. LANCET, 395 (10227). e47-. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(20)30462-1 Full text not available from this repository.

Mathur, Rohini; Bear, Laura; Khunti, Kamlesh; Eggo, Rosalind M; (2020) Urgent actions and policies needed to address COVID-19 among UK ethnic minorities. LANCET, 396 (10266). pp. 1866-1868. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(20)32465-X

Mathur, Rohini; Rentsch, Christopher T; Morton, Caroline E; Hulme, William J; Schultze, Anna; MacKenna, Brian; Eggo, Rosalind M; Bhaskaran, Krishnan; Wong, Angel YS; Williamson, Elizabeth J; +28 more... Forbes, Harriet; Wing, Kevin; McDonald, Helen I; Bates, Chris; Bacon, Seb; Walker, Alex J; Evans, David; Inglesby, Peter; Mehrkar, Amir; Curtis, Helen J; DeVito, Nicholas J; Croker, Richard; Drysdale, Henry; Cockburn, Jonathan; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Tomlinson, Laurie; Evans, Stephen JW; Grieve, Richard; Harrison, David; Rowan, Kathy; Khunti, Kamlesh; Chaturvedi, Nishi; Smeeth, Liam; Goldacre, Ben; OpenSAFELY Collaborative; (2020) Ethnic differences in SARS-CoV-2 infection and COVID-19-related hospitalisation, intensive care unit admission, and death in 17 million adults in England: an observational cohort study using the OpenSAFELY platform. MedRxiv, 397 (10286). pp. 1711-1724. DOI: https://doi.org/10.1016/S0140-6736(21)00634-6

Prem, Kiesha; Liu, Yang; Russell, Timothy W; Kucharski, Adam J; Eggo, Rosalind M; Davies, Nicholas; Centre for the Mathematical Modelling of Infectious Diseases COV; Jit, Mark; Klepac, Petra; (2020) The effect of control strategies to reduce social mixing on outcomes of the COVID-19 epidemic in Wuhan, China: a modelling study. The Lancet. Public health, 5 (5). e261-e270. DOI: https://doi.org/10.1016/S2468-2667(20)30073-6

Quilty, Billy J; Clifford, Sam; CMMID nCoV working group2; Flasche, Stefan; Eggo, Rosalind M; (2020) Effectiveness of airport screening at detecting travellers infected with novel coronavirus (2019-nCoV). Eurosurveillance, 25 (5). pp. 4-9. ISSN 1560-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.5.2000080

Quilty, Billy J; Diamond, Charlie; Liu, Yang; Gibbs, Hamish; Russell, Timothy W; Jarvis, Christopher I; Prem, Kiesha; Pearson, Carl AB; Clifford, Samuel; Flasche, Stefan; +4 more... CMMID COVID-19 working group; Klepac, Petra; Eggo, Rosalind M; Jit, Mark; (2020) The effect of travel restrictions on the geographical spread of COVID-19 between large cities in China: a modelling study. BMC medicine, 18 (1). 259-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01712-9

Rogers, Nina Trivedy; Waterlow, Naomi R; Brindle, Hannah; Enria, Luisa; Eggo, Rosalind M; Lees, Shelley; Roberts, Chrissy H; (2020) Behavioral Change Towards Reduced Intensity Physical Activity Is Disproportionately Prevalent Among Adults With Serious Health Issues or Self-Perception of High Risk During the UK COVID-19 Lockdown. Frontiers in Public Health, 8. 575091-. DOI: https://doi.org/10.3389/fpubh.2020.575091

Rogers, Nina Trivedy; Waterlow, Naomi; Brindle, Hannah; Enria, Luisa; Eggo, Rosalind M; Lees, Shelley; Roberts, Chrissy H; (2020) Behavioural change towards reduced intensity physical activity is disproportionately prevalent among adults with serious health issues or self-perception of high risk during the UK COVID-19 lockdown. Frontiers in public health. ISSN 2296-2565 DOI: https://doi.org/10.1101/2020.05.12.20098921

Russell, Timothy W; Golding, Nick; Hellewell, Joel; Abbott, Sam; Wright, Lawrence; Pearson, Carl AB; Zandvoort, Kevin van; Jarvis, Christopher I; Gibbs, Hamish; Liu, Yang; +3 more... Eggo, Rosalind M; Edmunds, W John; Kucharski, Adam J; (2020) Reconstructing the early global dynamics of under-ascertained COVID-19 cases and infections. DOI: https://doi.org/10.1101/2020.07.07.20148460

Russell, Timothy W; Golding, Nick; Hellewell, Joel; Abbott, Sam; Wright, Lawrence; Pearson, Carl AB; van Zandvoort, Kevin; Jarvis, Christopher I; Gibbs, Hamish; Liu, Yang; +4 more... Eggo, Rosalind M; Edmunds, W John; Kucharski, Adam J; CMMID COVID-19 working group; (2020) Reconstructing the early global dynamics of under-ascertained COVID-19 cases and infections. BMC medicine, 18 (1). 332-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01790-9

Russell, Timothy W; Hellewell, Joel; Jarvis, Christopher I; Van Zandvoort, Kevin; Abbott, Sam; Ratnayake, Ruwan; Flasche, Stefan; Eggo, Rosalind M; Edmunds, W John; Kucharski, Adam J; (2020) Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. BMJ global health. ISSN 2059-7908 DOI: https://doi.org/10.1101/2020.03.05.20031773

Russell, Timothy W; Hellewell, Joel; Jarvis, Christopher I; van Zandvoort, Kevin; Abbott, Sam; Ratnayake, Ruwan; CMMID COVID-19 working group; Flasche, Stefan; Eggo, Rosalind M; Edmunds, W John; +1 more... Kucharski, Adam J; (2020) Estimating the infection and case fatality ratio for coronavirus disease (COVID-19) using age-adjusted data from the outbreak on the Diamond Princess cruise ship, February 2020. Euro Surveill, 25 (12). ISSN 1560-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.12.2000256

Thompson, Robin N; Hollingsworth, T Déirdre; Isham, Valerie; Arribas-Bel, Daniel; Ashby, Ben; Britton, Tom; Challenor, Peter; Chappell, Lauren HK; Clapham, Hannah; Cunniffe, Nik J; +33 more... Dawid, A Philip; Donnelly, Christl A; Eggo, Rosalind M; Funk, Sebastian; Gilbert, Nigel; Glendinning, Paul; Gog, Julia R; Hart, William S; Heesterbeek, Hans; House, Thomas; Keeling, Matt; Kiss, István Z; Kretzschmar, Mirjam E; Lloyd, Alun L; McBryde, Emma S; McCaw, James M; McKinley, Trevelyan J; Miller, Joel C; Morris, Martina; O'Neill, Philip D; Parag, Kris V; Pearson, Carl AB; Pellis, Lorenzo; Pulliam, Juliet RC; Ross, Joshua V; Tomba, Gianpaolo Scalia; Silverman, Bernard W; Struchiner, Claudio J; Tildesley, Michael J; Trapman, Pieter; Webb, Cerian R; Mollison, Denis; Restif, Olivier; (2020) Key questions for modelling COVID-19 exit strategies. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 287 (1932). 20201405-. ISSN 0962-8452 DOI: https://doi.org/10.1098/rspb.2020.1405

Viner, Russell M; Mytton, Oliver T; Bonell, Chris; Melendez-Torres, GJ; Ward, Joseph; Hudson, Lee; Waddington, Claire; Thomas, James; Russell, Simon; van der Klis, Fiona; +6 more... Koirala, Archana; Ladhani, Shamez; Panovska-Griffiths, Jasmina; Davies, Nicholas G; Booy, Robert; Eggo, Rosalind M; (2020) Susceptibility to SARS-CoV-2 Infection Among Children and Adolescents Compared With Adults: A Systematic Review and Meta-analysis. JAMA PEDIATRICS, 175 (2). pp. 143-156. ISSN 2168-6203 DOI: https://doi.org/10.1001/jamapediatrics.2020.4573

Walker, Jemma L; Grint, Daniel J; Strongman, Helen; Eggo, Rosalind M; Peppa, Maria; Minassian, Caroline; Mansfield, Kathryn E; Rentsch, Christopher T; Douglas, Ian J; Mathur, Rohini; +8 more... Wong, Angel YS; Quint, Jennifer K; Andrews, Nick; Bernal, Jamie Lopez; Scott, J Anthony; Ramsay, Mary; Smeeth, Liam; McDonald, Helen; (2020) UK prevalence of underlying conditions which increase the risk of severe COVID-19 disease: a point prevalence study using electronic health records. MedRxiv. DOI: https://doi.org/10.1101/2020.08.24.20179192

Williamson, Elizabeth J; Tazare, John; Bhaskaran, Krishnan; Walker, Alex J; McDonald, Helen I; Tomlinson, Laurie; Bacon, Sebastian; Bates, Chris; Curtis, Helen J; Forbes, Harriet; +32 more... Minassian, Caroline; Morton, Caroline E; Nightingale, Emily; Mehrkar, Amir; Evans, Dave; Nicholson, Brian D; Leon, David; Inglesby, Peter; MacKenna, Brian; Cockburn, Jonathan; Davies, Nicholas G; Hulme, William; Morley, Jessica; Douglas, Ian J; Rentsch, Christopher T; Mathur, Rohini; Wong, Angel; Schultze, Anna; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Perera, Rafael; Grieve, Richard; Harrison, David; Steyerberg, Ewout; Eggo, Rosalind M; Diaz-Ordaz, Karla; Keogh, Ruth; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben; (2020) Study protocol: Comparison of different risk prediction modelling approaches for COVID-19 related death using the OpenSAFELY platform. Wellcome Open Research, 5. p. 243. DOI: https://doi.org/10.12688/wellcomeopenres.16353.1

van Leeuwen, Edwin; Sandmann, Frank G; Eggo, Rosalind M; White, Peter J; (2020) Time use and social mixing during and around festive periods: Potential changes in the age distribution of COVID-19 cases from increased intergenerational interactions. medRxiv preprint - BMJ Yale. ISSN 1468-5833 DOI: https://doi.org/10.1101/2020.12.21.20248607

van Zandvoort, Kevin; Jarvis, Christopher I; Pearson, Carl AB; Davies, Nicholas G; CMMID COVID-19 working group; Ratnayake, Ruwan; Russell, Timothy W; Kucharski, Adam J; Jit, Mark; Flasche, Stefan; +2 more... Eggo, Rosalind M; Checchi, Francesco; (2020) Response strategies for COVID-19 epidemics in African settings: a mathematical modelling study. BMC Medicine, 18 (1). 324-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01789-2

Bellan, Steven E; Eggo, Rosalind M; Gsell, Pierre-Stéphane; Kucharski, Adam J; Dean, Natalie E; Donohue, Richard; Zook, Matt; Edmunds, W John; Odhiambo, Frank; Longini, Ira M; +3 more... Brisson, Marc; Mahon, Barbara E; Henao-Restrepo, Ana Maria; (2019) An online decision tree for vaccine efficacy trial design during infectious disease epidemics: The InterVax-Tool. Vaccine, 37 (31). pp. 4376-4381. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2019.06.019

Funk, Sebastian; Camacho, Anton; Kucharski, Adam J; Lowe, Rachel; Eggo, Rosalind M; Edmunds, W John; (2019) Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15. PLoS computational biology, 15 (2). e1006785-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1006785

Jendrossek, Mario; Edmunds, W John; Rohan, Hana; Clifford, Samuel; Mooney, Thomas A; Eggo, Rosalind M; (2019) Health care worker vaccination against Ebola: Vaccine acceptance and employment duration in Sierra Leone. Vaccine, 37 (8). pp. 1101-1108. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.12.060

Polonsky, Jonathan A; Baidjoe, Amrish; Kamvar, Zhian N; Cori, Anne; Durski, Kara; Edmunds, W John; Eggo, Rosalind M; Funk, Sebastian; Kaiser, Laurent; Keating, Patrick; +9 more... de Waroux, Olivier le Polain; Marks, Michael; Moraga, Paula; Morgan, Oliver; Nouvellet, Pierre; Ratnayake, Ruwan; Roberts, Chrissy H; Whitworth, Jimmy; Jombart, Thibaut; (2019) Outbreak analytics: a developing data science for informing the response to emerging pathogens. Philosophical Transactions of the Royal Society B: Biological Sciences, 374 (1776). 20180276-. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2018.0276

Robert, A; Edmunds, J; Eggo, R; Henao-Restrepo, A-M; Gsell, P-S; Watson, CH; Longini, IM; Rambaut, A; Camacho, A; Hué, S; (2019) A39 Reconstruction of Ebola chains of transmission using sequence and epidemiological data. Virus evolution, 5 (Suppl ). ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vez002.038

Robert, Alexis; Camacho, Anton; Edmunds, W John; Baguelin, Marc; Muyembe Tamfum, Jean-Jacques; Rosello, Alicia; Kéïta, Sakoba; Eggo, Rosalind M; (2019) Control of Ebola virus disease outbreaks: Comparison of health care worker-targeted and community vaccination strategies. Epidemics, 27. pp. 106-114. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2019.03.001

Robert, Alexis; Edmunds, W John; Watson, Conall H; Henao-Restrepo, Ana Maria; Gsell, Pierre-Stéphane; Williamson, Elizabeth; Longini, Ira M; Sakoba, Keïta; Kucharski, Adam J; Touré, Alhassane; +13 more... Nadlaou, Sévérine Danmadji; Diallo, Boubacar; Barry, Mamamdou Saidou; Fofana, Thierno Oumar; Camara, Louceny; Kaba, Ibrahima Lansana; Sylla, Lansana; Diaby, Mohamed Lamine; Soumah, Ousmane; Diallo, Abdourahime; Niare, Amadou; Diallo, Abdourahmane; Eggo, Rosalind M; (2019) Determinants of Transmission Risk During the Late Stage of the West African Ebola Epidemic. American Journal of Epidemiology, 188 (7). pp. 1319-1327. ISSN 0002-9262 DOI: https://doi.org/10.1093/aje/kwz090

van Zandvoort, Kevin; Checchi, Francesco; Diggle, Emma; Eggo, Rosalind M; Gadroen, Kartini; Mulholland, Kim; McGowan, Catherine R; le Polain de Waroux, Olivier; Rao, V Bhargavi; Satzke, Catherine; +1 more... Flasche, Stefan; (2019) Pneumococcal conjugate vaccine use during humanitarian crises. Vaccine, 37 (45). pp. 6787-6792. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2019.09.038

Camacho, Anton; Bouhenia, Malika; Alyusfi, Reema; Alkohlani, Abdulhakeem; Naji, Munna Abdulla Mohammed; de Radiguès, Xavier; Abubakar, Abdinasir M; Almoalmi, Abdulkareem; Seguin, Caroline; Sagrado, Maria Jose; +16 more... Poncin, Marc; McRae, Melissa; Musoke, Mohammed; Rakesh, Ankur; Porten, Klaudia; Haskew, Christopher; Atkins, Katherine E; Eggo, Rosalind M; Azman, Andrew S; Broekhuijsen, Marije; Saatcioglu, Mehmet Akif; Pezzoli, Lorenzo; Quilici, Marie-Laure; Al-Mesbahy, Abdul Rahman; Zagaria, Nevio; Luquero, Francisco J; (2018) Cholera epidemic in Yemen, 2016-18: an analysis of surveillance data. The Lancet Global health, 6 (6). e680-e690. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(18)30230-4

Eggo, Rosalind M; Kucharski, Adam J; (2018) Expected Duration of Adverse Pregnancy Outcomes after Zika Epidemic. Emerging infectious diseases, 24 (1). pp. 127-130. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2401.170482

O'Reilly, Kathleen M; Lowe, Rachel; Edmunds, W John; Mayaud, Philippe; Kucharski, Adam; Eggo, Rosalind M; Funk, Sebastian; Bhatia, Deepit; Khan, Kamran; Kraemer, Moritz UG; +8 more... Wilder-Smith, Annelies; Rodrigues, Laura C; Brasil, Patricia; Massad, Eduardo; Jaenisch, Thomas; Cauchemez, Simon; Brady, Oliver J; Yakob, Laith; (2018) Projecting the end of the Zika virus epidemic in Latin America: a modelling analysis. BMC medicine, 16 (1). 180-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-018-1158-8

Opatowski, Lulla; Baguelin, Marc; Eggo, Rosalind M; (2018) Influenza Interaction with Cocirculating Pathogens, and Its Impact on Surveillance, Pathogenesis and Epidemic Profile: A Key Role for Mathematical Modeling. PLoS Pathogens, 14 (2). ISSN 1553-7366 DOI: https://doi.org/10.1101/203265

Opatowski, Lulla; Baguelin, Marc; Eggo, Rosalind M; (2018) Influenza interaction with cocirculating pathogens and its impact on surveillance, pathogenesis, and epidemic profile: A key role for mathematical modelling. PLoS pathogens, 14 (2). e1006770-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1006770

Funk, Sebastian; Ciglenecki, Iza; Tiffany, Amanda; Gignoux, Etienne; Camacho, Anton; Eggo, Rosalind M; Kucharski, Adam J; Edmunds, W John; Bolongei, Josephus; Azuma, Phillip; +9 more... Clement, Peter; Alpha, Tamba S; Sterk, Esther; Telfer, Barbara; Engel, Gregory; Parker, Lucy Anne; Suzuki, Motoi; Heijenberg, Nico; Reeder, Bruce; (2017) The impact of control strategies and behavioural changes on the elimination of Ebola from Lofa County, Liberia. Philosophical transactions of the Royal Society of London Series B, Biological sciences, 372 (1721). p. 20160302. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2016.0302

Johnson, Helen C; Lafferty, Erin I; Eggo, Rosalind M; Louie, Karly; Soldan, Kate; Waller, Jo; Edmunds, W John; (2017) Effect of HPV vaccination and cervical cancer screening in England by ethnicity: a modelling study. The lancet Public health, 3 (1). e44-e51. ISSN 2468-2667 DOI: https://doi.org/10.1016/S2468-2667(17)30238-4

Camacho, A; Eggo, RM; Goeyvaerts, N; Vandebosch, A; Mogg, R; Funk, S; Kucharski, AJ; Watson, CH; Vangeneugden, T; Edmunds, WJ; (2016) Real-time dynamic modelling for the design of a cluster-randomized phase 3 Ebola vaccine trial in Sierra Leone. Vaccine, 35 (4). pp. 544-551. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.12.019

Eggo, Rosalind M; Scott, James G; Galvani, Alison P; Meyers, Lauren Ancel; (2016) Respiratory virus transmission dynamics determine timing of asthma exacerbation peaks: Evidence from a population-level model. Proceedings of the National Academy of Sciences of the United States of America, 113 (8). pp. 2194-2199. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1518677113

Funk, Sebastian; Camacho, Anton; Kucharski, Adam J; Eggo, Rosalind M; Edmunds, W John; (2016) Real-time forecasting of infectious disease dynamics with a stochastic semi-mechanistic model. Epidemics, 22. pp. 56-61. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2016.11.003

Funk, Sebastian; Kucharski, Adam J; Camacho, Anton; Eggo, Rosalind M; Yakob, Laith; Murray, Lawrence M; Edmunds, W John; (2016) Comparative Analysis of Dengue and Zika Outbreaks Reveals Differences by Setting and Virus. PLoS neglected tropical diseases, 10 (12). e0005173-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005173

Kucharski, Adam J; Eggo, Rosalind M; Watson, Conall H; Camacho, Anton; Funk, Sebastian; Edmunds, W John; (2016) Effectiveness of Ring Vaccination as Control Strategy for Ebola Virus Disease. Emerging infectious diseases, 22 (1). pp. 105-108. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2201.151410

Kucharski, Adam J; Funk, Sebastian; Eggo, Rosalind M; Mallet, Henri-Pierre; Edmunds, W John; Nilles, Eric J; (2016) Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013-14 French Polynesia Outbreak. PLoS neglected tropical diseases, 10 (5). e0004726-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004726

Reid, Margaret; Gunn, Julia; Shah, Snehal; Donovan, Michael; Eggo, Rosalind; Babin, Steven; Stajner, Ivanka; Rogers, Eric; Ensor, Katherine B; Raun, Loren; +8 more... Levy, Jonathan I; Painter, Ian; Phipatanakul, Wanda; Yip, Fuyuen; Nath, Anjali; Streichert, Laura C; Tong, Catherine; Burkom, Howard; (2016) Cross-Disciplinary Consultancy to Enhance Predictions of Asthma Exacerbation Risk in Boston. Online journal of public health informatics, 8 (3). e199-. ISSN 1947-2579 DOI: https://doi.org/10.5210/ojphi.v8i3.6902

Sissoko, Daouda; Duraffour, Sophie; Kerber, Romy; Kolie, Jacques Seraphin; Beavogui, Abdoul Habib; Camara, Alseny-Modet; Colin, Géraldine; Rieger, Toni; Oestereich, Lisa; Pályi, Bernadett; +31 more... Wurr, Stephanie; Guedj, Jeremie; Nguyen, Thi Huyen Tram; Eggo, Rosalind M; Watson, Conall H; Edmunds, W John; Bore, Joseph Akoi; Koundouno, Fara Raymond; Cabeza-Cabrerizo, Mar; Carter, Lisa L; Kafetzopoulou, Liana Eleni; Kuisma, Eeva; Michel, Janine; Patrono, Livia Victoria; Rickett, Natasha Y; Singethan, Katrin; Rudolf, Martin; Lander, Angelika; Pallasch, Elisa; Bockholt, Sabrina; Rodríguez, Estefanía; Di Caro, Antonino; Wölfel, Roman; Gabriel, Martin; Gurry, Céline; Formenty, Pierre; Keïta, Sakoba; Malvy, Denis; Carroll, Miles W; Anglaret, Xavier; Günther, Stephan; (2016) Persistence and clearance of Ebola virus RNA from seminal fluid of Ebola virus disease survivors: a longitudinal analysis and modelling study. The Lancet Global health, 5 (1). e80-e88. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(16)30243-1

Camacho, Anton; Eggo, Rosalind M; Funk, Sebastian; Watson, Conall H; Kucharski, Adam J; Edmunds, W John; (2015) Estimating the probability of demonstrating vaccine efficacy in the declining Ebola epidemic: a Bayesian modelling approach. BMJ open, 5 (12). e009346-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2015-009346

Eggo, Rosalind M; Watson, Conall H; Camacho, Anton; Kucharski, Adam J; Funk, Sebastian; Edmunds, W John; (2015) Duration of Ebola virus RNA persistence in semen of survivors: population-level estimates and projections. Euro surveillance, 20 (48). 30083-. ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2015.20.48.30083

Hoen, Anne G; Hladish, Thomas J; Eggo, Rosalind M; Lenczner, Michael; Brownstein, John S; Meyers, Lauren Ancel; (2015) Epidemic Wave Dynamics Attributable to Urban Community Structure: A Theoretical Characterization of Disease Transmission in a Large Network. Journal of medical Internet research, 17 (7). e169-. ISSN 1439-4456 DOI: https://doi.org/10.2196/jmir.3720

Eggo, Rosalind M; Cauchemez, Simon; Ferguson, Neil M; (2011) Spatial dynamics of the 1918 influenza pandemic in England, Wales and the United States. Journal of the Royal Society, Interface / the Royal Society, 8 (55). pp. 233-243. ISSN 1742-5689 DOI: https://doi.org/10.1098/rsif.2010.0216

Jombart, T; Eggo, RM; Dodd, PJ; Balloux, F; (2010) Reconstructing disease outbreaks from genetic data: a graph approach. Heredity, 106 (2). pp. 383-390. ISSN 0018-067X DOI: https://doi.org/10.1038/hdy.2010.78 Full text not available from this repository.

Jombart, Thibaut; Eggo, Rosalind M; Dodd, Pete; Balloux, Francois; (2009) Spatiotemporal dynamics in the early stages of the 2009 A/H1N1 influenza pandemic. PLoS currents, 1 (AUG). RRN1026-. ISSN 2157-3999 DOI: https://doi.org/10.1371/currents.rrn1026