Arashiro, T; (2024) Factors associated with SARS-CoV-2 infection and effectiveness of COVID-19 vaccines in Japan and the Philippines. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04673659

Jafari, Yalda; Brady, Oliver J; Biggs, Joseph R; Lien, Le Thuy; Mai, Huynh Kim; Nguyen, Hien Anh Thi; Van Loock, Marnix; Herrera-Taracena, Guillermo; Menten, Joris; Iwasaki, Chihiro; +13 more... Takegata, Mizuki; Kitamura, Noriko; Do Thai, Hung; Minh, Bui Xuan; Morita, Kouichi; Anh, Dang Duc; Clifford, Sam; Prem, Kiesha; Hafalla, Julius; Edmunds, W John; Yoshida, Lay Myint; Hibberd, Martin L; Hué, Stéphane; (2024) Could prophylactic antivirals reduce dengue incidence in a high-prevalence endemic area? PLoS neglected tropical diseases, 18 (7). e0012334-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0012334

Wang, Linfeng; Lim, Dodge R; Phelan, Jody E; Reyes, Lorenzo T; Palparan, Alma G; Sanchez, Maria Guileane C; Asuncion, Louella Abigail A; Tujan, Ma Angelica A; Medado, Inez Andrea P; Daga, Chona Mae A; +14 more... Llames, Jo-Hannah S; Mitarai, Satoshi; Murase, Yoshiro; Morishige, Yuta; Ang, Concepcion F; Malabad, John Carlo M; Montoya, Jaime C; Hafalla, Julius C; Campino, Susana; Hibberd, Martin L; Ama, Cecilia G; Basilio, Ramon P; La Paz, Eva Maria Cutiongoco-De; Clark, Taane G; (2024) Whole genome sequencing analysis of Mycobacterium tuberculosis reveals circulating strain types and drug-resistance mutations in the Philippines. Scientific reports, 14 (1). 19602-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-024-70471-x

Arashiro, Takeshi; Arima, Yuzo; Kuramochi, Jin; Muraoka, Hirokazu; Sato, Akihiro; Chubachi, Kumi; Oba, Kunihiro; Yanai, Atsushi; Arioka, Hiroko; Uehara, Yuki; +18 more... Ihara, Genei; Kato, Yasuyuki; Yanagisawa, Naoki; Nagura, Yoshito; Yanai, Hideki; Ueda, Akihiro; Numata, Akira; Kato, Hideaki; Oka, Hideaki; Nishida, Yusuke; Ooki, Takao; Nidaira, Yuki; Stucky, Ashley; Suzuki, Tadaki; Smith, Chris; Hibberd, Martin; Ariyoshi, Koya; Suzuki, Motoi; (2023) Letter to the editor: Importance of considering high-risk behaviours in COVID-19 vaccine effectiveness estimates with observational studies. Eurosurveillance, 28 (4). pp. 1-2. ISSN 1560-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2023.28.4.2300034

Arashiro, Takeshi; Miwa, Maki; Nakagawa, Hidenori; Takamatsu, Junpei; Oba, Kunihiro; Fujimi, Satoshi; Kikuchi, Hitoshi; Iwasawa, Takamasa; Kanbe, Fumiko; Oyama, Keisuke; +51 more... Kanai, Masayuki; Ogata, Yoshitaka; Asakura, Takanori; Asami, Takahiro; Mizuno, Keiko; Sugita, Manabu; Jinta, Torahiko; Nishida, Yusuke; Kato, Hideaki; Atagi, Kazuaki; Higaki, Taiki; Nakano, Yoshio; Tsutsumi, Takeya; Doi, Kent; Okugawa, Shu; Ueda, Akihiro; Nakamura, Akira; Yoshida, Toru; Shimada-Sammori, Kaoru; Shimizu, Keiki; Fujita, Yasuo; Okochi, Yasumi; Tochitani, Kentaro; Nakanishi, Asuka; Rinka, Hiroshi; Taniyama, Daisuke; Yamaguchi, Asase; Uchikura, Toshio; Matsunaga, Maiko; Aono, Hiromi; Hamaguchi, Masanari; Motoda, Kentaro; Nakayama, Sohei; Yamamoto, Kei; Oka, Hideaki; Tanaka, Katsushi; Inoue, Takeshi; Kobayashi, Mieko; Fujitani, Shigeki; Tsukahara, Maki; Takeda, Saki; Stucky, Ashley; Suzuki, Tadaki; Smith, Chris; Hibberd, Martin; Ariyoshi, Koya; Fujino, Yuji; Arima, Yuzo; Takeda, Shinhiro; Hashimoto, Satoru; Suzuki, Motoi; (2023) COVID-19 vaccine effectiveness against severe COVID-19 requiring oxygen therapy, invasive mechanical ventilation, and death in Japan: A multicenter case-control study (MOTIVATE study). Vaccine, 42 (3). pp. 677-688. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2023.12.033

Ashall, James; Shah, Sonal; Biggs, Joseph R; Chang, Jui-Ning R; Jafari, Yalda; Brady, Oliver J; Mai, Huynh Kim; Lien, Le Thuy; Do Thai, Hung; Nguyen, Hien Anh Thi; +11 more... Anh, Dang Duc; Iwasaki, Chihiro; Kitamura, Noriko; Van Loock, Marnix; Herrera-Taracena, Guillermo; Rasschaert, Freya; Van Wesenbeeck, Liesbeth; Yoshida, Lay-Myint; Hafalla, Julius Clemence R; Hue, Stephane; Hibberd, Martin L; (2023) A phylogenetic study of dengue virus in urban Vietnam shows long-term persistence of endemic strains. Virus evolution, 9 (1). vead012-. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vead012

Gómez-González, Paula Josefina; Grabowska, Anna D; Tientcheu, Leopold D; Tsolaki, Anthony G; Hibberd, Martin L; Campino, Susana; Phelan, Jody E; Clark, Taane G; (2023) Functional genetic variation in pe/ppe genes contributes to diversity in Mycobacterium tuberculosis lineages and potential interactions with the human host. Frontiers in microbiology, 14. 1244319-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2023.1244319

Hackman, Jada; Sheppard, Carmen; Phelan, Jody; Jones-Warner, William; Sobkowiak, Ben; Shah, Sonal; Litt, David; Fry, Norman K; Toizumi, Michiko; Yoshida, Lay-Myint; +4 more... Hibberd, Martin; Miller, Elizabeth; Flasche, Stefan; Hué, Stéphane; (2023) Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study. Wellcome open research, 8. 427-. DOI: https://doi.org/10.12688/wellcomeopenres.19219.1

Napier, G; (2023) Using whole genome sequencing data to identify strain-types, transmission enhancers and novel drug resistance mutations of Mycobacterium tuberculosis. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04670881

Phelan, Jody; Gomez-Gonzalez, Paula Josefina; Andreu, Nuria; Omae, Yosuke; Toyo-Oka, Licht; Yanai, Hideki; Miyahara, Reiko; Nedsuwan, Supalert; de Sessions, Paola Florez; Campino, Susana; +10 more... Sallah, Neneh; Parkhill, Julian; Smittipat, Nat; Palittapongarnpim, Prasit; Mushiroda, Taisei; Kubo, Michiaki; Tokunaga, Katsushi; Mahasirimongkol, Surakameth; Hibberd, Martin L; Clark, Taane G; (2023) Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications, 14 (1). 549-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-023-36282-w

Sy, Ava Kristy; Koo, Carmen; Privaldos, Kristine JR; Quinones, Mary Ann T; Igoy, Mary AU; Villanueva, Sharon YAM; Hibberd, Martin L; Ng, Lee Ching; Hapuarachchi, Hapuarachchige C; (2023) Genetic Diversity and Dispersal of DENGUE Virus among Three Main Island Groups of the Philippines during 2015-2017. Viruses, 15 (5). p. 1079. ISSN 1999-4915 DOI: https://doi.org/10.3390/v15051079

Arashiro, Takeshi; Arima, Yuzo; Muraoka, Hirokazu; Sato, Akihiro; Oba, Kunihiro; Uehara, Yuki; Arioka, Hiroko; Yanai, Hideki; Kuramochi, Jin; Ihara, Genei; +16 more... Chubachi, Kumi; Yanagisawa, Naoki; Nagura, Yoshito; Kato, Yasuyuki; Ueda, Akihiro; Numata, Akira; Kato, Hideaki; Ishii, Koji; Ooki, Takao; Oka, Hideaki; Nishida, Yusuke; Stucky, Ashley; Smith, Chris; Hibberd, Martin; Ariyoshi, Koya; Suzuki, Motoi; (2022) Coronavirus Disease 19 (COVID-19) Vaccine Effectiveness Against Symptomatic Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection During Delta-Dominant and Omicron-Dominant Periods in Japan: A Multicenter Prospective Case-control Study (Factors Associated with SARS-CoV-2 Infection and the Effectiveness of COVID-19 Vaccines Study). Clinical Infectious Diseases, 76 (3). e108-e115. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciac635

Arashiro, Takeshi; Arima, Yuzo; Muraoka, Hirokazu; Sato, Akihiro; Oba, Kunihiro; Uehara, Yuki; Arioka, Hiroko; Yanai, Hideki; Yanagisawa, Naoki; Nagura, Yoshito; +13 more... Kato, Yasuyuki; Kato, Hideaki; Ueda, Akihiro; Ishii, Koji; Ooki, Takao; Oka, Hideaki; Nishida, Yusuke; Stucky, Ashley; Miyahara, Reiko; Smith, Chris; Hibberd, Martin; Ariyoshi, Koya; Suzuki, Motoi; (2022) Behavioral factors associated with SARS-CoV-2 infection in Japan. Influenza Other Respir Viruses, 16 (5). pp. 952-961. DOI: https://doi.org/10.1111/irv.12992

Arashiro, Takeshi; Arima, Yuzo; Stucky, Ashley; Smith, Chris; Hibberd, Martin; Ariyoshi, Koya; Suzuki, Motoi; (2022) Social and Behavioral Factors Associated with Lack of Intent to Receive COVID-19 Vaccine, Japan. Emerging Infectious Diseases, 28 (9). pp. 1909-1910. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2809.220300

Ashall, J; (2022) A genomic and immunological investigation of dengue virus transmission. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04670674

Biggs, JR; (2022) Immuno-epidemiological analysis of dengue to enhance surveillance. PhD (research paper style) thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04665245

Biggs, Joseph R; Sy, Ava Kristy; Ashall, James; Santoso, Marsha S; Brady, Oliver J; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Tandoc, Amadou O; Sucaldito, Nemia L; +23 more... Mai, Huynh Kim; Lien, Le Thuy; Thai, Hung Do; Nguyen, Hien Anh Thi; Anh, Dang Duc; Iwasaki, Chihiro; Kitamura, Noriko; Van Loock, Marnix; Herrera-Taracena, Guillermo; Menten, Joris; Rasschaert, Freya; Van Wesenbeeck, Liesbeth; Masyeni, Sri; Haryanto, Sotianingsih; Yohan, Benediktus; Cutiongco-de la Paz, Eva; Yoshida, Lay-Myint; Hue, Stephane; Rosario Z Capeding, Maria; Padilla, Carmencita D; Sasmono, R Tedjo; Hafalla, Julius Clemence R; Hibberd, Martin L; (2022) Combining rapid diagnostic tests to estimate primary and post-primary dengue immune status at the point of care. PLoS Neglected Tropical Diseases, 16 (5). e0010365-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0010365

Kumar, Vikrant; Pouw, Richard B; Autio, Matias I; Sagmeister, Manfred G; Phua, Zai Yang; Borghini, Lisa; Wright, Victoria J; Hoggart, Clive; Pan, Bangfen; Tan, Antson Kiat Yee; +28 more... Binder, Alexander; Brouwer, Mieke C; Pinnock, Ellie; De Groot, Ronald; Hazelzet, Jan; Emonts, Marieke; Van Der Flier, Michiel; Reiter, Karl; Nöthen, Markus M; Hoffmann, Per; EUCLIDS consortium; Schlapbach, Luregn J; Bellos, Evangelos; Anderson, Suzanne; Secka, Fatou; Martinón-Torres, Federico; Salas, Antonio; Fink, Colin; Carrol, Enitan D; Pollard, Andrew J; Coin, Lachlan J; Zenz, Werner; Wouters, Diana; Ang, Lay Teng; Hibberd, Martin L; Levin, Michael; Kuijpers, Taco W; Davila, Sonia; (2022) Variation in CFHR3 determines susceptibility to meningococcal disease by controlling factor H concentrations. American Journal of Human Genetics, 109 (9). pp. 1680-1691. ISSN 0002-9297 DOI: https://doi.org/10.1016/j.ajhg.2022.08.001

Montoya, Jaime C; Malabad, John Carlo M; Ang, Concepcion F; Reyes, Lorenzo T; Basilio, Ramon P; Lim, Dodge R; Amarillo, Maria Lourdes E; Ama, Ma Cecilia G; Phelan, Jody E; Hibberd, Martin L; +1 more... Clark, Taane G; (2022) Molecular characterization of drug-resistant Mycobacterium tuberculosis among Filipino patients derived from the national tuberculosis prevalence survey Philippines 2016. Tuberculosis, 135. 102211-. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2022.102211

Phelan, Jody; Deelder, Wouter; Ward, Daniel; Campino, Susana; Hibberd, Martin L; Clark, Taane G; (2022) COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data. BMC Bioinformatics, 23 (1). 137-. ISSN 1471-2105 DOI: https://doi.org/10.1186/s12859-022-04632-y

Santoso, Marsha Sinditia; Haryanto, Sotianingsih; Rulian, Fadil; Hayati, Rahma F; Kristiani, Amanda; Kartika, Rini; Yohan, Benediktus; Hibberd, Martin L; Sasmono, R Tedjo; (2022) Continuous Circulation of Chikungunya Virus during COVID-19 Pandemic in Jambi, Sumatra, Indonesia. Tropical Medicine and Infectious Disease, 7 (6). p. 91. DOI: https://doi.org/10.3390/tropicalmed7060091

Shah, Javeed A; Warr, Alex J; Graustein, Andrew D; Saha, Aparajita; Dunstan, Sarah J; Thuong, Nguyen TT; Thwaites, Guy E; Caws, Maxine; Thai, Phan VK; Bang, Nguyen D; +16 more... Chau, Tran TH; Khor, Chiea Chuen; Li, Zheng; Hibberd, Martin; Chang, Xuling; Nguyen, Felicia K; Hernandez, Carlo A; Jones, Madison A; Sassetti, Christopher M; Fitzgerald, Katherine A; Musvosvi, Munyaradzi; Gela, Anele; Hanekom, Willem A; Hatherill, Mark; Scriba, Thomas J; Hawn, Thomas R; (2022) REL and BHLHE40 Variants Are Associated with IL-12 and IL-10 Responses and Tuberculosis Risk. The Journal of Immunology, 208 (6). pp. 1352-1361. ISSN 0022-1767 DOI: https://doi.org/10.4049/jimmunol.2100671 Full text not available from this repository.

van Beek, Anna E; Pouw, Richard B; Wright, Victoria J; Sallah, Neneh; Inwald, David; Hoggart, Clive; Brouwer, Mieke C; Galassini, Rachel; Thomas, John; Calvo-Bado, Leo; +6 more... Fink, Colin G; Jongerius, Ilse; Hibberd, Martin; Wouters, Diana; Levin, Michael; Kuijpers, Taco W; (2022) Low Levels of Factor H Family Proteins During Meningococcal Disease Indicate Systemic Processes Rather Than Specific Depletion by Neisseria meningitidis. Frontiers in Immunology, 13. 876776-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2022.876776

Biggs, Joseph R; Sy, Ava Kristy; Brady, Oliver J; Kucharski, Adam J; Funk, Sebastian; Tu, Yun-Hung; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Ashall, James; +8 more... Avelino, Ferchito L; Sucaldito, Nemia L; Tandoc, Amado O; Cutiongco-de la Paz, Eva; Capeding, Maria Rosario Z; Padilla, Carmencita D; Hibberd, Martin L; Hafalla, Julius Clemence R; (2021) Serological Evidence of Widespread Zika Transmission across the Philippines. Viruses, 13 (8). p. 1441. DOI: https://doi.org/10.3390/v13081441

Biggs, Joseph R; Sy, Ava Kristy; Sherratt, Katharine; Brady, Oliver J; Kucharski, Adam J; Funk, Sebastian; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Avelino, Ferchito L; +7 more... Sucaldito, Nemia L; Tandoc, Amado O; la Paz, Eva Cutiongco-de; Capeding, Maria Rosario Z; Padilla, Carmencita D; Hafalla, Julius Clemence R; Hibberd, Martin L; (2021) Estimating the annual dengue force of infection from the age of reporting primary infections across urban centres in endemic countries. BMC medicine, 19 (1). 217-. DOI: https://doi.org/10.1186/s12916-021-02101-6

Brady, Oliver J; Kucharski, Adam J; Funk, Sebastian; Jafari, Yalda; Loock, Marnix Van; Herrera-Taracena, Guillermo; Menten, Joris; Edmunds, W John; Sim, Shuzhen; Ng, Lee-Ching; +2 more... Hué, Stéphane; Hibberd, Martin L; (2021) Case-area targeted interventions (CATI) for reactive dengue control: Modelling effectiveness of vector control and prophylactic drugs in Singapore. PLoS neglected tropical diseases, 15 (8). e0009562-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0009562

Gliddon, Harriet D; Kaforou, Myrsini; Alikian, Mary; Habgood-Coote, Dominic; Zhou, Chenxi; Oni, Tolu; Anderson, Suzanne T; Brent, Andrew J; Crampin, Amelia C; Eley, Brian; +11 more... Heyderman, Robert; Kern, Florian; Langford, Paul R; Ottenhoff, Tom HM; Hibberd, Martin L; French, Neil; Wright, Victoria J; Dockrell, Hazel M; Coin, Lachlan J; Wilkinson, Robert J; Levin, Michael; (2021) Identification of Reduced Host Transcriptomic Signatures for Tuberculosis Disease and Digital PCR-Based Validation and Quantification. Frontiers in immunology, 12. 637164-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2021.637164

Gómez-González, Paula J; Perdigao, Joao; Gomes, Pedro; Puyen, Zully M; Santos-Lazaro, David; Napier, Gary; Hibberd, Martin L; Viveiros, Miguel; Portugal, Isabel; Campino, Susana; +2 more... Phelan, Jody E; Clark, Taane G; (2021) Genetic diversity of candidate loci linked to Mycobacterium tuberculosis resistance to bedaquiline, delamanid and pretomanid. Scientific reports, 11 (1). 19431-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-021-98862-4

Henderson, Alasdair D; Kama, Mike; Aubry, Maite; Hue, Stephane; Teissier, Anita; Naivalu, Taina; Bechu, Vinaisi D; Kailawadoko, Jimaima; Rabukawaqa, Isireli; Sahukhan, Aalisha; +9 more... Hibberd, Martin L; Nilles, Eric J; Funk, Sebastian; Whitworth, Jimmy; Watson, Conall H; Lau, Colleen L; Edmunds, W John; Cao-Lormeau, Van-Mai; Kucharski, Adam J; (2021) Interactions between timing and transmissibility explain diverse flavivirus dynamics in Fiji. Nature communications, 12 (1). 1671-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-21788-y

Hoggart, Clive; Shimizu, Chisato; Galassini, Rachel; Wright, Victoria J; Shailes, Hannah; Bellos, Evan; Herberg, Jethro A; Pollard, Andrew J; O'Connor, Daniel; Choi, Shing Wan; +17 more... Seaby, Eleanor G; Menikou, Stephanie; Hibberd, Martin; Sallah, Neneh; Burgner, David; Brogan, Paul; Patel, Harsita; Kim, Jihoon; Tremoulet, Adriana H; Salo, Eeva; van Stijn, Diana; Kuijpers, Taco; Burns, Jane C; Levin, Michael; International Kawasaki Disease Genetics Consortium; UK Kawasaki Disease Genetics Consortium; EUCLIDS Consortium; International Kawasaki Disease Genetics Consortium, UK Kawasaki Disease Genetics Consortium, EUCLIDS Consortium; (2021) Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease. European journal of human genetics : EJHG, 29 (12). pp. 1734-1744. ISSN 1018-4813 DOI: https://doi.org/10.1038/s41431-021-00838-5

Kwan, Philip Kam Weng; Cross, Gail B; Naftalin, Claire M; Ahidjo, Bintou A; Mok, Chee Keng; Fanusi, Felic; Permata Sari, Intan; Chia, Siok Ching; Kumar, Shoban Krishna; Alagha, Rawan; +5 more... Tham, Sai Meng; Archuleta, Sophia; Sessions, October M; Hibberd, Martin L; Paton, Nicholas I; (2021) A blood RNA transcriptome signature for COVID-19. BMC medical genomics, 14 (1). 155-. ISSN 1755-8794 DOI: https://doi.org/10.1186/s12920-021-01006-w

Lay, Christophe; Chu, Collins Wenhan; Purbojati, Rikky Wenang; Acerbi, Enzo; Drautz-Moses, Daniela I; de Sessions, Paola Florez; Jie, Song; Ho, Eliza; Kok, Yee Jiun; Bi, Xuezhi; +16 more... Chen, Shuwen; Mak, Shi Ya; Chua, Mei Chien; Goh, Anne EN; Chiang, Wen Chin; Rao, Rajeshwar; Chaithongwongwatthana, Surasith; Khemapech, Nipon; Chongsrisawat, Voranush; Martin, Rocio; JULIUS Study Group; Roeselers, Guus; Ho, Ying Swan; Hibberd, Martin L; Schuster, Stephan C; Knol, Jan; JULIUS Study Group; (2021) A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants. BMC microbiology, 21 (1). 191-. ISSN 1471-2180 DOI: https://doi.org/10.1186/s12866-021-02230-1

Santoso, Marsha S; Masyeni, Sri; Haryanto, Sotianingsih; Yohan, Benediktus; Hibberd, Martin L; Sasmono, R Tedjo; (2021) Assessment of dengue and COVID-19 antibody rapid diagnostic tests cross-reactivity in Indonesia. Virology journal, 18 (1). 54-. ISSN 1743-422X DOI: https://doi.org/10.1186/s12985-021-01522-2

Spadar, Anton; Perdigão, João; Phelan, Jody; Charleston, James; Modesto, Ana; Elias, Rita; de Sessions, Paola Florez; Hibberd, Martin L; Campino, Susana; Duarte, Aida; +1 more... Clark, Taane G; (2021) Methylation analysis of Klebsiella pneumoniae from Portuguese hospitals. Scientific reports, 11 (1). 6491-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-021-85724-2

Ward, Daniel; Higgins, Matthew; Phelan, Jody E; Hibberd, Martin L; Campino, Susana; Clark, Taane G; (2021) An integrated in silico immuno-genetic analytical platform provides insights into COVID-19 serological and vaccine targets. GENOME MEDICINE, 13 (1). 4-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-020-00822-6

Ward, Daniel; Higgins, Matthew; Phelan, Jody E; Hibberd, Martin L; Campino, Susana; Clark, Taane G; (2021) An integrated<i>in silico</i>immuno-genetic analytical platform provides insights into COVID-19 serological and vaccine targets. Genome medicine. ISSN 1756-994X DOI: https://doi.org/10.1101/2020.05.11.089409

Biggs, Joseph R; Sy, Ava Kristy; Brady, Oliver J; Kucharski, Adam J; Funk, Sebastian; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Tu, Yun-Hung; Avelino, Ferchito L; +15 more... Sucaldito, Nemia L; Mai, Huynh Kim; Lien, Le Thuy; Do Thai, Hung; Nguyen, Hien Anh Thi; Anh, Dang Duc; Iwasaki, Chihiro; Kitamura, Noriko; Yoshida, Lay-Myint; Tandoc, Amado O; la Paz, Eva Cutiongco-de; Capeding, Maria Rosario Z; Padilla, Carmencita D; Hafalla, Julius Clemence R; Hibberd, Martin L; (2020) A serological framework to investigate acute primary and post-primary dengue cases reporting across the Philippines. BMC medicine, 18 (1). 364-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01833-1

Farrukee, Rubaiyea; Tai, Celeste Ming-Kay; Oh, Ding Yuan; Anderson, Danielle E; Gunalan, Vithiagaran; Hibberd, Martin; Lau, Gary Yuk-Fai; Barr, Ian G; Messling, Veronika von; Maurer-Stroh, Sebastian; +1 more... Hurt, Aeron C; (2020) Utilising animal models to evaluate oseltamivir efficacy against influenza A and B viruses with reduced in vitro susceptibility. PLOS PATHOGENS, 16 (6). e1008592-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1008592 Item availability may be restricted.

Kwan, Philip Kam Weng; Lin, Wenwei; Naim, Ahmad Nazri Mohamed; Periaswamy, Balamurugan; De Sessions, Paola Florez; Hibberd, Martin L; Paton, Nicholas I; (2020) Gene expression responses to anti-tuberculous drugs in a whole blood model. BMC MICROBIOLOGY, 20 (1). 81-. ISSN 1471-2180 DOI: https://doi.org/10.1186/s12866-020-01766-y

Kwan, Philip Kam Weng; Periaswamy, Balamurugan; De Sessions, Paola Florez; Lin, Wenwei; Molton, James S; Naftalin, Claire M; Naim, Ahmad Nazri Mohamed; Hibberd, Martin L; Paton, Nicholas I; (2020) A blood RNA transcript signature for TB exposure in household contacts. BMC INFECTIOUS DISEASES, 20 (1). 403-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-020-05116-1

Napier, Gary; Campino, Susana; Merid, Yared; Abebe, Markos; Woldeamanuel, Yimtubezinash; Aseffa, Abraham; Hibberd, Martin L; Phelan, Jody; Clark, Taane G; (2020) Robust barcoding and identification of Mycobacterium tuberculosis lineages for epidemiological and clinical studies. GENOME MEDICINE, 12 (1). 114-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-020-00817-3

Oppong, YEA; (2020) Investigating the genomic basis of antimicrobial resistance in Mycobacterium tuberculosis (Mtb) using genome-wide methodologies. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04657715

Perdigão, João; Modesto, Ana; Pereira, AL; Neto, O; Matos, V; Godinho, A; Phelan, Jody; Charleston, James; Spadar, Anton; de Sessions, Paola Florez; +9 more... Hibberd, Martin; Campino, Susana; Costa, A; Fernandes, F; Ferreira, F; Correia, AB; Gonçalves, Luisa; Clark, Taane G; Duarte, Aida; (2020) Whole-genome sequencing resolves a polyclonal outbreak by extended-spectrum beta-lactam and carbapenem-resistant Klebsiella pneumoniae in a Portuguese tertiary-care hospital. Microbial genomics, 7 (6). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000349

Perdigão, João; Silva, Carla; Maltez, Fernando; Machado, Diana; Miranda, Anabela; Couto, Isabel; Rabna, Paulo; Florez de Sessions, Paola; Phelan, Jody; Pain, Arnab; +6 more... McNerney, Ruth; Hibberd, Martin L; Mokrousov, Igor; Clark, Taane G; Viveiros, Miguel; Portugal, Isabel; (2020) Emergence of multidrug-resistant Mycobacterium tuberculosis of the Beijing lineage in Portugal and Guinea-Bissau: a snapshot of moving clones by whole-genome sequencing. EMERGING MICROBES & INFECTIONS, 9 (1). pp. 1342-1353. ISSN 2222-1751 DOI: https://doi.org/10.1080/22221751.2020.1774425

Sallah, Neneh; Miley, Wendell; Labo, Nazzarena; Carstensen, Tommy; Fatumo, Segun; Gurdasani, Deepti; Pollard, Martin O; Dilthey, Alexander T; Mentzer, Alexander J; Marshall, Vickie; +10 more... Cornejo Castro, Elena M; Pomilla, Cristina; Young, Elizabeth H; Asiki, Gershim; Hibberd, Martin L; Sandhu, Manjinder; Kellam, Paul; Newton, Robert; Whitby, Denise; Barroso, Inês; (2020) Distinct genetic architectures and environmental factors associate with host response to the γ2-herpesvirus infections. NATURE COMMUNICATIONS, 11 (1). 3849-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-020-17696-2

Santoso, Marsha S; Yohan, Benediktus; Denis, Dionisius; Hayati, Rahma F; Haryanto, Sotianingsih; Trianty, Leily; Noviyanti, Rintis; Hibberd, Martin L; Sasmono, R Tedjo; (2020) Diagnostic accuracy of 5 different brands of dengue virus non-structural protein 1 (NS1) antigen rapid diagnostic tests (RDT) in Indonesia. Diagnostic Microbiology and Infectious Disease, 98 (2). 115116-. ISSN 0732-8893 DOI: https://doi.org/10.1016/j.diagmicrobio.2020.115116

Ajawatanawong, Pravech; Yanai, Hideki; Smittipat, Nat; Disratthakit, Areeya; Yamada, Norio; Miyahara, Reiko; Nedsuwan, Supalert; Imasanguan, Worarat; Kantipong, Pacharee; Chaiyasirinroje, Boonchai; +16 more... Wongyai, Jiraporn; Plitphonganphim, Supada; Tantivitayakul, Pornpen; Phelan, Jody; Parkhill, Julian; Clark, Taane G; Hibberd, Martin L; Ruangchai, Wuthiwat; Palittapongarnpim, Panawun; Juthayothin, Tada; Thawornwattana, Yuttapong; Viratyosin, Wasna; Tongsima, Sissades; Mahasirimongkol, Surakameth; Tokunaga, Katsushi; Palittapongarnpim, Prasit; (2019) A novel Ancestral Beijing sublineage of Mycobacterium tuberculosis suggests the transition site to Modern Beijing sublineages. Scientific reports, 9 (1). 13718-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-019-50078-3

Aubry, Maite; Kama, Mike; Vanhomwegen, Jessica; Teissier, Anita; Mariteragi-Helle, Teheipuaura; Hue, Stephane; Hibberd, Martin L; Manuguerra, Jean-Claude; Christi, Ketan; Watson, Conall H; +6 more... Nilles, Eric J; Lau, Colleen L; Aaskov, John; Musso, Didier; Kucharski, Adam J; Cao-Lormeau, Van-Mai; (2019) Ross River Virus Antibody Prevalence, Fiji Islands, 2013-2015. EMERGING INFECTIOUS DISEASES, 25 (4). pp. 827-830. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2504.180694

Benavente, Ernest Diez; Gomes, Ana Rita; De Silva, Jeremy Ryan; Grigg, Matthew; Walker, Harriet; Barber, Bridget E; William, Timothy; Yeo, Tsin Wen; de Sessions, Paola Florez; Ramaprasad, Abhinay; +10 more... Ibrahim, Amy; Charleston, James; Hibberd, Martin L; Pain, Arnab; Moon, Robert W; Auburn, Sarah; Ling, Lau Yee; Anstey, Nicholas M; Clark, Taane G; Campino, Susana; (2019) Whole genome sequencing of amplified Plasmodium knowlesi DNA from unprocessed blood reveals genetic exchange events between Malaysian Peninsular and Borneo subpopulations. Scientific reports, 9 (1). 9873-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-019-46398-z

Bidet, Katell; Ho, Victor; Chu, Collins Wenhan; Naim, Ahmad Nazri Hohamed; Thazin, Khaing; Chan, Kuan Rong; Low, Jenny GH; Choy, Milly M; Wong, Lan Hiong; Florez de Sessions, Paola; +5 more... Lee, Yie Hou; Hibberd, Martin L; Ooi, Eng Eong; Fink, Katja; Chen, Jianzhu; (2019) Mimicking immune signatures of flavivirus infection with targeted adjuvants improves dengue subunit vaccine immunogenicity. NPJ VACCINES, 4 (1). 27-. ISSN 2059-0105 DOI: https://doi.org/10.1038/s41541-019-0119-3

Borghini, Lisa; Png, Eileen; Binder, Alexander; Wright, Victoria J; Pinnock, Ellie; de Groot, Ronald; Hazelzet, Jan; Emonts, Marieke; Van der Flier, Michiel; Schlapbach, Luregn J; +14 more... Anderson, Suzanne; Secka, Fatou; Salas, Antonio; Fink, Colin; Carrol, Enitan D; Pollard, Andrew J; Coin, Lachlan J; Kuijpers, Taco W; Martinon-Torres, Federico; Zenz, Werner; Levin, Michael; Hibberd, Martin L; Davila, Sonia; EUCLIDS consortium; (2019) Identification of regulatory variants associated with genetic susceptibility to meningococcal disease. Scientific reports, 9 (1). 6966-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-019-43292-6

Gomez-Gonzalez, Paula J; Andreu, Nuria; Phelan, Jody E; de Sessions, Paola Florez; Glynn, Judith R; Crampin, Amelia C; Campino, Susana; Butcher, Philip D; Hibberd, Martin L; Clark, Taane G; (2019) An integrated whole genome analysis of Mycobacterium tuberculosis reveals insights into relationship between its genome, transcriptome and methylome. SCIENTIFIC REPORTS, 9 (1). 5204-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-019-41692-2

Huber, Roland G; Lim, Xin Ni; Ng, Wy Ching; Sim, Adelene YL; Poh, Hui Xian; Shen, Yang; Lim, Su Ying; Sundstrom, Karin B; Sun, Xuyang; Aw, Jong Ghut; +15 more... Too, Horng Khit; Boey, Peng Hee; Wilm, Andreas; Chawla, Tanu; Choy, Milly M; Jiang, Lu; de Sessions, Paola Florez; Loh, Xian Jun; Alonso, Sylvie; Hibberd, Martin; Nagarajan, Niranjan; Ooi, Eng Eong; Bond, Peter J; Sessions, October M; Wan, Yue; (2019) Structure mapping of dengue and Zika viruses reveals functional long-range interactions. NATURE COMMUNICATIONS, 10 (1). 1408-. DOI: https://doi.org/10.1038/s41467-019-09391-8

Kama, Mike; Aubry, Maite; Naivalu, Taina; Vanhomwegen, Jessica; Mariteragi-Helle, Teheipuaura; Teissier, Anita; Paoaafaite, Tuterarii; Hué, Stéphane; Hibberd, Martin L; Manuguerra, Jean-Claude; +8 more... Christi, Ketan; Watson, Conall H; Nilles, Eric J; Aaskov, John; Lau, Colleen L; Musso, Didier; Kucharski, Adam J; Cao-Lormeau, Van-Mai; (2019) Sustained Low-Level Transmission of Zika and Chikungunya Viruses after Emergence in the Fiji Islands. EMERGING INFECTIOUS DISEASES, 25 (8). pp. 1535-1538. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2508.180524

Martinez-Vega, Rosario; Jauneikaite, Elita; Thoon, Koh Cheng; Chua, Hui Ying; Huishi Chua, Amanda; Khong, Wei Xin; Tan, Ban Hock; Low Guek Hong, Jenny; Venkatachalam, Indumathi; Anantharajah Tambyah, Paul; +3 more... Hibberd, Martin L; Clarke, Stuart C; Ng, Oon Tek; (2019) Risk factor profiles and clinical outcomes for children and adults with pneumococcal infections in Singapore: A need to expand vaccination policy? PLOS ONE, 14 (10). e0220951-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0220951

Nagelkerke, Sietse Q; Tacke, Carline E; Breunis, Willemijn B; Tanck, Michael WT; Geissler, Judy; Png, Eileen; Hoang, Long T; van der Heijden, Joris; Naim, Ahmad NM; Yeung, Rae SM; +16 more... Levin, Michael L; Wright, Victoria J; Burgner, David P; Ponsonby, Anne-Louise; Ellis, Justine A; Cimaz, Rolando; Shimizu, Chisato; Burns, Jane C; Fijnvandraat, Karin; van der Schoot, C Ellen; van den Berg, Timo K; de Boer, Martin; Davila, Sonia; Hibberd, Martin L; Kuijpers, Taco W; International Kawasaki Disease Genetics Consortium; (2019) Extensive Ethnic Variation and Linkage Disequilibrium at the FCGR2/3 Locus: Different Genetic Associations Revealed in Kawasaki Disease. FRONTIERS IN IMMUNOLOGY, 10 (MAR). 185-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2019.00185

O'Connor, Daniel; Png, Eileen; Khor, Chiea Chuen; Snape, Matthew D; Hill, Adrian VS; van der Klis, Fiona; Hoggart, Clive; Levin, Michael; Hibberd, Martin L; Pollard, Andrew J; (2019) Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization. Cell Reports, 27 (11). 3241-3253.e4. ISSN 2211-1247 DOI: https://doi.org/10.1016/j.celrep.2019.05.053

Oppong, Yaa EA; Phelan, Jody; Perdigão, João; Machado, Diana; Miranda, Anabela; Portugal, Isabel; Viveiros, Miguel; Clark, Taane G; Hibberd, Martin L; (2019) Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance. BMC genomics, 20 (1). 252-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-019-5615-3

Phelan, Jody E; Lim, Dodge R; Mitarai, Satoshi; de Sessions, Paola Florez; Tujan, Ma Angelica A; Reyes, Lorenzo T; Medado, Inez Andrea P; Palparan, Alma G; Naim, Ahmad Nazri Mohamed; Jie, Song; +10 more... Segubre-Mercado, Edelwisa; Simoes, Beatriz; Campino, Susana; Hafalla, Julius C; Murase, Yoshiro; Morishige, Yuta; Hibberd, Martin L; Kato, Seiya; Ama, Ma Cecilia G; Clark, Taane G; (2019) Mycobacterium tuberculosis whole genome sequencing provides insights into the Manila strain and drug-resistance mutations in the Philippines. Scientific reports, 9 (1). 9305-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-019-45566-5

Phelan, Jody E; O'Sullivan, Denise M; Machado, Diana; Ramos, Jorge; Oppong, Yaa EA; Campino, Susana; O'Grady, Justin; McNerney, Ruth; Hibberd, Martin L; Viveiros, Miguel; +2 more... Huggett, Jim F; Clark, Taane G; (2019) Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. Genome medicine, 11 (1). 41-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-019-0650-x

Stamou, Maria; Ng, Shi-Yan; Brand, Harrison; Wang, Harold; Plummer, Lacey; Best, Lyle; Havlicek, Steven; Hibberd, Martin; Khor, Chiea Chuen; Gusella, James; +4 more... Balasubramanian, Ravikumar; Talkowski, Michael; Stanton, Lawrence W; Crowley, William F; (2019) A Balanced Translocation in Kallmann Syndrome Implicates a Long Noncoding RNA, RMST, as a GnRH Neuronal Regulator. The Journal of Clinical Endocrinology & Metabolism, 105 (3). e231-e244. ISSN 0021-972X DOI: https://doi.org/10.1210/clinem/dgz011

Benavente, Ernest Diez; Oresegun, Damilola R; de Sessions, Paola Florez; Walker, Eloise M; Roper, Cally; Dombrowski, Jamille G; de Souza, Rodrigo M; Marinho, Claudio RF; Sutherland, Colin J; Hibberd, Martin L; +4 more... Mohareb, Fady; Baker, David A; Clark, Taane G; Campino, Susana; (2018) Global genetic diversity of var2csa in Plasmodium falciparum with implications for malaria in pregnancy and vaccine development. Scientific reports, 8 (1). 15429-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-33767-3

Borghini, Lisa; Hibberd, Martin; Davila, Sonia; (2018) Changes in H3K27ac following lipopolysaccharide stimulation of nasopharyngeal epithelial cells. BMC genomics, 19 (1). 969-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-018-5295-4

Campos, Monica C; Dombrowski, Jamille G; Phelan, Jody; Marinho, Claudio RF; Hibberd, Martin; Clark, Taane G; Campino, Susana; (2018) Zika might not be acting alone: Using an ecological study approach to investigate potential co-acting risk factors for an unusual pattern of microcephaly in Brazil. PloS one, 13 (8). e0201452-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0201452

Coll, Francesc; Phelan, Jody; Hill-Cawthorne, Grant A; Nair, Mridul B; Mallard, Kim; Ali, Shahjahan; Abdallah, Abdallah M; Alghamdi, Saad; Alsomali, Mona; Ahmed, Abdallah O; +41 more... Portelli, Stephanie; Oppong, Yaa; Alves, Adriana; Bessa, Theolis Barbosa; Campino, Susana; Caws, Maxine; Chatterjee, Anirvan; Crampin, Amelia C; Dheda, Keertan; Furnham, Nicholas; Glynn, Judith R; Grandjean, Louis; Ha, Dang Minh; Hasan, Rumina; Hasan, Zahra; Hibberd, Martin L; Joloba, Moses; Jones-López, Edward C; Matsumoto, Tomoshige; Miranda, Anabela; Moore, David J; Mocillo, Nora; Panaiotov, Stefan; Parkhill, Julian; Penha, Carlos; Perdigão, João; Portugal, Isabel; Rchiad, Zineb; Robledo, Jaime; Sheen, Patricia; Shesha, Nashwa Talaat; Sirgel, Frik A; Sola, Christophe; Sousa, Erivelton Oliveira; Streicher, Elizabeth M; Van Helden, Paul; Viveiros, Miguel; Warren, Robert M; McNerney, Ruth; Pain, Arnab; Clark, Taane G; (2018) Author Correction: Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics, 50 (5). 764-. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-018-0074-3 Full text not available from this repository.

Coll, Francesc; Phelan, Jody; Hill-Cawthorne, Grant A; Nair, Mridul B; Mallard, Kim; Ali, Shahjahan; Abdallah, Abdallah M; Alghamdi, Saad; Alsomali, Mona; Ahmed, Abdallah O; +41 more... Portelli, Stephanie; Oppong, Yaa; Alves, Adriana; Bessa, Theolis Barbosa; Campino, Susana; Caws, Maxine; Chatterjee, Anirvan; Crampin, Amelia C; Dheda, Keertan; Furnham, Nicholas; Glynn, Judith R; Grandjean, Louis; Minh Ha, Dang; Hasan, Rumina; Hasan, Zahra; Hibberd, Martin L; Joloba, Moses; Jones-López, Edward C; Matsumoto, Tomoshige; Miranda, Anabela; Moore, David J; Mocillo, Nora; Panaiotov, Stefan; Parkhill, Julian; Penha, Carlos; Perdigão, João; Portugal, Isabel; Rchiad, Zineb; Robledo, Jaime; Sheen, Patricia; Shesha, Nashwa Talaat; Sirgel, Frik A; Sola, Christophe; Oliveira Sousa, Erivelton; Streicher, Elizabeth M; Helden, Paul Van; Viveiros, Miguel; Warren, Robert M; McNerney, Ruth; Pain, Arnab; Clark, Taane G; (2018) Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics, 50 (2). pp. 307-316. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-017-0029-0

Ho, Eliza Xin Pei; Cheung, Chui Ming Gemmy; Sim, Shuzhen; Chu, Collins Wenhan; Wilm, Andreas; Lin, Clarabelle Bitong; Mathur, Ranjana; Wong, Doric; Chan, Choi Mun; Bhagarva, Mayuri; +6 more... Laude, Augustinus; Lim, Tock Han; Wong, Tien Yin; Cheng, Ching Yu; Davila, Sonia; Hibberd, Martin; (2018) Human pharyngeal microbiota in age-related macular degeneration. PloS one, 13 (8). e0201768-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0201768

Kucharski, Adam J; Kama, Mike; Watson, Conall H; Aubry, Maite; Funk, Sebastian; Henderson, Alasdair D; Brady, Oliver J; Vanhomwegen, Jessica; Manuguerra, Jean-Claude; Lau, Colleen L; +6 more... Edmunds, W John; Aaskov, John; Nilles, Eric James; Cao-Lormeau, Van-Mai; Hué, Stéphane; Hibberd, Martin L; (2018) Using paired serology and surveillance data to quantify dengue transmission and control during a large outbreak in Fiji. eLife, 7. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.34848

Molton, James S; Low, Isaac; Choy, Milly Ming Ju; Aw, Pauline Poh Kim; Hibberd, Martin L; Tambyah, Paul A; Wilder-Smith, Annelies; (2018) Dengue virus not detected in human semen. Journal of travel medicine, 25 (1). ISSN 1195-1982 DOI: https://doi.org/10.1093/jtm/tay023 Full text not available from this repository.

Palittapongarnpim, Prasit; Ajawatanawong, Pravech; Viratyosin, Wasna; Smittipat, Nat; Disratthakit, Areeya; Mahasirimongkol, Surakameth; Yanai, Hideki; Yamada, Norio; Nedsuwan, Supalert; Imasanguan, Worarat; +13 more... Kantipong, Pacharee; Chaiyasirinroje, Boonchai; Wongyai, Jiraporn; Toyo-Oka, Licht; Phelan, Jody; Parkhill, Julian; Clark, Taane G; Hibberd, Martin L; Ruengchai, Wuthiwat; Palittapongarnpim, Panawun; Juthayothin, Tada; Tongsima, Sissades; Tokunaga, Katsushi; (2018) Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. Scientific reports, 8 (1). 11597-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-29986-3

Phelan, J; (2018) A bioinformatic analysis of Mycobacterium tuberculosis and host genomic data. PhD (research paper style) thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04646310

Phelan, Jody; de Sessions, Paola Florez; Tientcheu, Leopold; Perdigao, Joao; Machado, Diana; Hasan, Rumina; Hasan, Zahra; Bergval, Indra L; Anthony, Richard; McNerney, Ruth; +6 more... Antonio, Martin; Portugal, Isabel; Viveiros, Miguel; Campino, Susana; Hibberd, Martin L; Clark, Taane G; (2018) Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally. Scientific reports, 8 (1). 160-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-18188-y

Skibinski, David AG; Jones, Leigh Ann; Zhu, Yuan O; Xue, Lin Wu; Au, Bijin; Lee, Bernett; Naim, Ahmad Nazri Mohamed; Lee, Audrey; Kaliaperumal, Nivashini; Low, Jenny GH; +11 more... Lee, Lawrence S; Poidinger, Michael; Saudan, Philippe; Bachmann, Martin; Ooi, Eng Eong; Hanson, Brendon J; Novotny-Diermayr, Veronica; Matter, Alex; Fairhurst, Anna-Marie; Hibberd, Martin L; Connolly, John E; (2018) Induction of Human T-cell and Cytokine Responses Following Vaccination with a Novel Influenza Vaccine. Scientific Reports, 8 (1). 18007-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-36703-7

Ta, Le Duc Huy; Yap, Gaik Chin; Tay, Carina Jing Xuan; Lim, Alicia Shi Min; Huang, Chiung-Hui; Chu, Collins Wenhan; De Sessions, Paola Florez; Shek, Lynette P; Goh, Anne; Van Bever, Hugo PS; +14 more... Teoh, Oon Hoe; Soh, Jian Yi; Thomas, Biju; Ramamurthy, Mahesh Babu; Goh, Daniel YT; Lay, Christophe; Soh, Shu-E; Chan, Yiong Huak; Saw, Seang-Mei; Kwek, Kenneth; Chong, Yap-Seng; Godfrey, Keith M; Hibberd, Martin Lloyd; Lee, Bee Wah; (2018) Establishment of the nasal microbiota in the first 18 months of life: Correlation with early-onset rhinitis and wheezing. The Journal of allergy and clinical immunology, 142 (1). pp. 86-95. ISSN 0091-6749 DOI: https://doi.org/10.1016/j.jaci.2018.01.032

Wright, Victoria J; Herberg, Jethro A; Kaforou, Myrsini; Shimizu, Chisato; Eleftherohorinou, Hariklia; Shailes, Hannah; Barendregt, Anouk M; Menikou, Stephanie; Gormley, Stuart; Berk, Maurice; +11 more... Hoang, Long Truong; Tremoulet, Adriana H; Kanegaye, John T; Coin, Lachlan JM; Glodé, Mary P; Hibberd, Martin; Kuijpers, Taco W; Hoggart, Clive J; Burns, Jane C; Levin, Michael; Immunopathology of Respiratory, Inflammatory and Infectious Dise; (2018) Diagnosis of Kawasaki Disease Using a Minimal Whole-Blood Gene Expression Signature. JAMA Pediatrics, 172 (10). e182293-. ISSN 2168-6203 DOI: https://doi.org/10.1001/jamapediatrics.2018.2293

Zhu, Yuan O; Aw, Pauline; Aung, Myo Myint; Lee, Hong Kai; Hibberd, Martin; Lee, Guan Huei; (2018) Patterns of mutation within an emerging endemic lineage of HEV-3a. Journal of viral hepatitis, 26 (1). pp. 191-198. ISSN 1352-0504 DOI: https://doi.org/10.1111/jvh.13015 Full text not available from this repository.

Andreu, Nuria; Phelan, Jody; de Sessions, Paola F; Cliff, Jacqueline M; Clark, Taane G; Hibberd, Martin L; (2017) Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. Scientific reports, 7 (1). 42225-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep42225

Ang, Michelle LT; Zainul Rahim, Siti Z; de Sessions, Paola Florez; Lin, Wenwei; Koh, Vanessa; Pethe, Kevin; Hibberd, Martin L; Alonso, Sylvie; (2017) EthA/R-Independent Killing of Mycobacterium tuberculosis by Ethionamide. FRONTIERS IN MICROBIOLOGY, 8 (APR). 710-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2017.00710

Aung, Tin; Ozaki, Mineo; Lee, Mei Chin; Schlötzer-Schrehardt, Ursula; Thorleifsson, Gudmar; Mizoguchi, Takanori; Igo, Robert P; Haripriya, Aravind; Williams, Susan E; Astakhov, Yury S; +279 more... Orr, Andrew C; Burdon, Kathryn P; Nakano, Satoko; Mori, Kazuhiko; Abu-Amero, Khaled; Hauser, Michael; Li, Zheng; Prakadeeswari, Gopalakrishnan; Bailey, Jessica N Cooke; Cherecheanu, Alina Popa; Kang, Jae H; Nelson, Sarah; Hayashi, Ken; Manabe, Shin-Ichi; Kazama, Shigeyasu; Zarnowski, Tomasz; Inoue, Kenji; Irkec, Murat; Coca-Prados, Miguel; Sugiyama, Kazuhisa; Järvelä, Irma; Schlottmann, Patricio; Lerner, S Fabian; Lamari, Hasnaa; Nilgün, Yildirim; Bikbov, Mukharram; Park, Ki Ho; Cha, Soon Cheol; Yamashiro, Kenji; Zenteno, Juan C; Jonas, Jost B; Kumar, Rajesh S; Perera, Shamira A; Chan, Anita SY; Kobakhidze, Nino; George, Ronnie; Vijaya, Lingam; Do, Tan; Edward, Deepak P; de Juan Marcos, Lourdes; Pakravan, Mohammad; Moghimi, Sasan; Ideta, Ryuichi; Bach-Holm, Daniella; Kappelgaard, Per; Wirostko, Barbara; Thomas, Samuel; Gaston, Daniel; Bedard, Karen; Greer, Wenda L; Yang, Zhenglin; Chen, Xueyi; Huang, Lulin; Sang, Jinghong; Jia, Hongyan; Jia, Liyun; Qiao, Chunyan; Zhang, Hui; Liu, Xuyang; Zhao, Bowen; Wang, Ya-Xing; Xu, Liang; Leruez, Stéphanie; Reynier, Pascal; Chichua, George; Tabagari, Sergo; Uebe, Steffen; Zenkel, Matthias; Berner, Daniel; Mossböck, Georg; Weisschuh, Nicole; Hoja, Ursula; Welge-Luessen, Ulrich-Christoph; Mardin, Christian; Founti, Panayiota; Chatzikyriakidou, Anthi; Pappas, Theofanis; Anastasopoulos, Eleftherios; Lambropoulos, Alexandros; Ghosh, Arkasubhra; Shetty, Rohit; Porporato, Natalia; Saravanan, Vijayan; Venkatesh, Rengaraj; Shivkumar, Chandrashekaran; Kalpana, Narendran; Sarangapani, Sripriya; Kanavi, Mozhgan R; Beni, Afsaneh Naderi; Yazdani, Shahin; Lashay, Alireza; Naderifar, Homa; Khatibi, Nassim; Fea, Antonio; Lavia, Carlo; Dallorto, Laura; Rolle, Teresa; Frezzotti, Paolo; Paoli, Daniela; Salvi, Erika; Manunta, Paolo; Mori, Yosai; Miyata, Kazunori; Higashide, Tomomi; Chihara, Etsuo; Ishiko, Satoshi; Yoshida, Akitoshi; Yanagi, Masahide; Kiuchi, Yoshiaki; Ohashi, Tsutomu; Sakurai, Toshiya; Sugimoto, Takako; Chuman, Hideki; Aihara, Makoto; 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Telomeres Mendelian Randomization Collaboration; Haycock, Philip C; Burgess, Stephen; Nounu, Aayah; Zheng, Jie; Okoli, George N; Bowden, Jack; Wade, Kaitlin Hazel; Timpson, Nicholas J; Evans, David M; +189 more... Willeit, Peter; Aviv, Abraham; Gaunt, Tom R; Hemani, Gibran; Mangino, Massimo; Ellis, Hayley Patricia; Kurian, Kathreena M; Pooley, Karen A; Eeles, Rosalind A; Lee, Jeffrey E; Fang, Shenying; Chen, Wei V; Law, Matthew H; Bowdler, Lisa M; Iles, Mark M; Yang, Qiong; Worrall, Bradford B; Markus, Hugh Stephen; Hung, Rayjean J; Amos, Chris I; Spurdle, Amanda B; Thompson, Deborah J; O'Mara, Tracy A; Wolpin, Brian; Amundadottir, Laufey; Stolzenberg-Solomon, Rachael; Trichopoulou, Antonia; Onland-Moret, N Charlotte; Lund, Eiliv; Duell, Eric J; Canzian, Federico; Severi, Gianluca; Overvad, Kim; Gunter, Marc J; Tumino, Rosario; Svenson, Ulrika; van Rij, Andre; Baas, Annette F; Bown, Matthew J; Samani, Nilesh J; van t'Hof, Femke NG; Tromp, Gerard; Jones, Gregory T; Kuivaniemi, Helena; Elmore, James R; Johansson, Mattias; Mckay, James; Scelo, Ghislaine; Carreras-Torres, Robert; Gaborieau, Valerie; Brennan, Paul; Bracci, Paige M; Neale, Rachel E; Olson, Sara H; Gallinger, Steven; Li, Donghui; Petersen, Gloria M; Risch, Harvey A; Klein, Alison P; Han, Jiali; Abnet, Christian C; Freedman, Neal D; Taylor, Philip R; Maris, John M; Aben, Katja K; Kiemeney, Lambertus A; Vermeulen, Sita H; Wiencke, John K; Walsh, Kyle M; Wrensch, Margaret; Rice, Terri; Turnbull, Clare; Litchfield, Kevin; Paternoster, Lavinia; Standl, Marie; Abecasis, Gonçalo R; SanGiovanni, John Paul; Li, Yong; Mijatovic, Vladan; Sapkota, Yadav; Low, Siew-Kee; Zondervan, Krina T; Montgomery, Grant W; Nyholt, Dale R; van Heel, David A; Hunt, Karen; Arking, Dan E; Ashar, Foram N; Sotoodehnia, Nona; Woo, Daniel; Rosand, Jonathan; Comeau, Mary E; Brown, W Mark; Silverman, Edwin K; Hokanson, John E; Cho, Michael H; Hui, Jennie; Ferreira, Manuel A; Thompson, Philip J; Morrison, Alanna C; Felix, Janine F; Smith, Nicholas L; Christiano, Angela M; Petukhova, Lynn; Betz, Regina C; Fan, Xing; Zhang, Xuejun; Zhu, Caihong; Langefeld, Carl D; Thompson, Susan D; Wang, Feijie; Lin, Xu; Schwartz, David A; Fingerlin, Tasha; Rotter, Jerome I; Cotch, Mary Frances; Jensen, Richard A; Munz, Matthias; Dommisch, Henrik; Schaefer, Arne S; Han, Fang; Ollila, Hanna M; Hillary, Ryan P; Albagha, Omar; Ralston, Stuart H; Zeng, Chenjie; Zheng, Wei; Shu, Xiao-Ou; Reis, Andre; Uebe, Steffen; Hüffmeier, Ulrike; Kawamura, Yoshiya; Otowa, Takeshi; Sasaki, Tsukasa; Hibberd, Martin Lloyd; Davila, Sonia; Xie, Gang; Siminovitch, Katherine; Bei, Jin-Xin; Zeng, Yi-Xin; Försti, Asta; Chen, Bowang; Landi, Stefano; Franke, Andre; Fischer, Annegret; Ellinghaus, David; Flores, Carlos; Noth, Imre; Ma, Shwu-Fan; Foo, Jia Nee; Liu, Jianjun; Kim, Jong-Won; Cox, David G; Delattre, Olivier; Mirabeau, Olivier; Skibola, Christine F; Tang, Clara S; Garcia-Barcelo, Merce; Chang, Kai-Ping; Su, Wen-Hui; Chang, Yu-Sun; Martin, Nicholas G; Gordon, Scott; Wade, Tracey D; Lee, Chaeyoung; Kubo, Michiaki; Cha, Pei-Chieng; Nakamura, Yusuke; Levy, Daniel; Kimura, Masayuki; Hwang, Shih-Jen; Hunt, Steven; Spector, Tim; Soranzo, Nicole; Manichaikul, Ani W; Barr, R Graham; Kahali, Bratati; Speliotes, Elizabeth; Yerges-Armstrong, Laura M; Cheng, Ching-Yu; Jonas, Jost B; Wong, Tien Yin; Fogh, Isabella; Lin, Kuang; Powell, John F; Rice, Kenneth; Relton, Caroline L; Martin, Richard M; Davey Smith, George; (2017) Association Between Telomere Length and Risk of Cancer and Non-Neoplastic Diseases: A Mendelian Randomization Study. JAMA ONCOLOGY, 3 (5). pp. 636-651. ISSN 2374-2437 DOI: https://doi.org/10.1001/jamaoncol.2016.5945

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Whitehorn, James; Kien, Duong Thi Hue; Quyen, Nguyen Than Ha; Wills, Bridget; Van Vinh Chau, Nguyen; Tam, Dong Thi Hoai; Tuan, Nguyen Minh; Jaenisch, Thomas; Hibberd, Martin; Khor, Chiea Chuen; +1 more... Simmons, Cameron P; (2017) Genetic variants of MICB and PLCE1 and associations with the laboratory features of dengue. BMC infectious diseases, 17 (1). 412-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2514-6

Zhang, Rong; Knapp, Michael; Suzuki, Kentaro; Kajioka, Daiki; Schmidt, Johanna M; Winkler, Jonas; Yilmaz, Öznur; Pleschka, Michael; Cao, Jia; Kockum, Christina Clementson; +32 more... Barker, Gillian; Holmdahl, Gundela; Beaman, Glenda; Keene, David; Woolf, Adrian S; Cervellione, Raimondo M; Cheng, Wei; Wilkins, Simon; Gearhart, John P; Sirchia, Fabio; Di Grazia, Massimo; Ebert, Anne-Karolin; Rösch, Wolfgang; Ellinger, Jörg; Jenetzky, Ekkehart; Zwink, Nadine; Feitz, Wout F; Marcelis, Carlo; Schumacher, Johannes; Martinón-Torres, Federico; Hibberd, Martin Lloyd; Khor, Chiea Chuen; Heilmann-Heimbach, Stefanie; Barth, Sandra; Boyadjiev, Simeon A; Brusco, Alfredo; Ludwig, Michael; Newman, William; Nordenskjöld, Agneta; Yamada, Gen; Odermatt, Benjamin; Reutter, Heiko; (2017) ISL1 is a major susceptibility gene for classic bladder exstrophy and a regulator of urinary tract development. Scientific reports, 7 (1). 42170-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep42170

Zhu, Yuan O; Aw, Pauline PK; de Sessions, Paola Florez; Hong, Shuzhen; See, Lee Xian; Hong, Lewis Z; Wilm, Andreas; Li, Chen Hao; Hue, Stephane; Lim, Seng Gee; +3 more... Nagarajan, Niranjan; Burkholder, William F; Hibberd, Martin; (2017) Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history. BMC genomics, 18 (1). 829-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4217-1

Chang, David C; Hoang, Long T; Mohamed Naim, Ahmad Nazri; Dong, Hongping; Schreiber, Mark J; Hibberd, Martin L; Tan, Min Jie Alvin; Shi, Pei-Yong; (2016) Evasion of early innate immune response by 2'-O-methylation of dengue genomic RNA. Virology, 499. pp. 259-266. ISSN 0042-6822 DOI: https://doi.org/10.1016/j.virol.2016.09.022 Full text not available from this repository.

Chen, Feng; Wang, Shuang; Jiang, Xiaoqian; Ding, Sijie; Lu, Yao; Kim, Jihoon; Sahinalp, S Cenk; Shimizu, Chisato; Burns, Jane C; Wright, Victoria J; +9 more... Png, Eileen; Hibberd, Martin L; Lloyd, David D; Yang, Hai; Telenti, Amalio; Bloss, Cinnamon S; Fox, Dov; Lauter, Kristin; Ohno-Machado, Lucila; (2016) PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. Bioinformatics (Oxford, England), 33 (6). pp. 871-878. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/btw758 Full text not available from this repository.

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Lin, Wenwei; de Sessions, Paola Florez; Teoh, Garrett Hor Keong; Mohamed, Ahmad Naim Nazri; Zhu, Yuan O; Koh, Vanessa Hui Qi; Ang, Michelle Lay Teng; Dedon, Peter C; Hibberd, Martin Lloyd; Alonso, Sylvie; (2016) Transcriptional Profiling of Mycobacterium tuberculosis Exposed to In Vitro Lysosomal Stress. Infection and immunity, 84 (9). pp. 2505-2523. ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.00072-16 Full text not available from this repository.

Martinón-Torres, Federico; Png, Eileen; Khor, Chiea Chuen; Davila, Sonia; Wright, Victoria J; Sim, Kar Seng; Vega, Ana; Fachal, Laura; Inwald, David; Nadel, Simon; +18 more... Carrol, Enitan D; Martinón-Torres, Nazareth; Alonso, Sonia Marcos; Carracedo, Angel; Morteruel, Elvira; López-Bayón, Julio; Torre, Andrés Concha; Monge, Cristina Calvo; de Aguilar, Pilar Azcón González; Torné, Elisabeth Esteban; Martínez-Padilla, María Del Carmen; Martinón-Sánchez, José María; Levin, Michael; Hibberd, Martin L; Salas, Antonio; ESIGEM network; ESPID meningococcal consortium – UK; EUCLIDS consortium members - Imperial College London (www.euclid; (2016) Natural resistance to Meningococcal Disease related to CFH loci: Meta-analysis of genome-wide association studies. Scientific reports, 6 (1). 35842-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep35842

Pang, Junxiong; Lindblom, Anna; Tolfvenstam, Thomas; Thein, Tun-Linn; Naim, Ahmad Nazri Mohamed; Ling, Ling; Chow, Angelia; Chen, Mark I-Cheng; Ooi, Eng Eong; Leo, Yee Sin; +1 more... Hibberd, Martin L; (2016) Discovery and Validation of Prognostic Biomarker Models to Guide Triage among Adult Dengue Patients at Early Infection. PloS one, 11 (6). e0155993-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0155993

Phelan, Jody E; Coll, Francesc; Bergval, Indra; Anthony, Richard M; Warren, Rob; Sampson, Samantha L; Gey van Pittius, Nicolaas C; Glynn, Judith R; Crampin, Amelia C; Alves, Adriana; +20 more... Bessa, Theolis Barbosa; Campino, Susana; Dheda, Keertan; Grandjean, Louis; Hasan, Rumina; Hasan, Zahra; Miranda, Anabela; Moore, David; Panaiotov, Stefan; Perdigao, Joao; Portugal, Isabel; Sheen, Patricia; de Oliveira Sousa, Erivelton; Streicher, Elizabeth M; van Helden, Paul D; Viveiros, Miguel; Hibberd, Martin L; Pain, Arnab; McNerney, Ruth; Clark, Taane G; (2016) Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages. BMC genomics, 17 (1). 151-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-016-2467-y

Phelan, Jody; Coll, Francesc; McNerney, Ruth; Ascher, David B; Pires, Douglas EV; Furnham, Nick; Coeck, Nele; Hill-Cawthorne, Grant A; Nair, Mridul B; Mallard, Kim; +6 more... Ramsay, Andrew; Campino, Susana; Hibberd, Martin L; Pain, Arnab; Rigouts, Leen; Clark, Taane G; (2016) Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance. BMC medicine, 14 (1). 31-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-016-0575-9

Shimizu, Chisato; Eleftherohorinou, Hariklia; Wright, Victoria J; Kim, Jihoon; Alphonse, Martin P; Perry, James C; Cimaz, Rolando; Burgner, David; Dahdah, Nagib; Hoang, Long T; +17 more... Khor, Chiea Chuen; Salgado, Andrea; Tremoulet, Adriana H; Davila, Sonia; Kuijpers, Taco W; Hibberd, Martin L; Johnson, Todd A; Takahashi, Atsushi; Tsunoda, Tatsuhiko; Kubo, Michiaki; Tanaka, Toshihiro; Onouchi, Yoshihiro; Yeung, Rae SM; Coin, Lachlan JM; Levin, Michael; Burns, Jane C; International Kawasaki Disease Genetics Consortium; (2016) Genetic Variation in the SLC8A1 Calcium Signaling Pathway Is Associated With Susceptibility to Kawasaki Disease and Coronary Artery Abnormalities. Circulation Cardiovascular genetics, 9 (6). pp. 559-568. ISSN 1942-325X DOI: https://doi.org/10.1161/CIRCGENETICS.116.001533

Sim, Shuzhen; Hibberd, Martin L; (2016) Caenorhabditis elegans susceptibility to gut Enterococcus faecalis infection is associated with fat metabolism and epithelial junction integrity. BMC microbiology, 16 (1). 6-. ISSN 1471-2180 DOI: https://doi.org/10.1186/s12866-016-0624-8

Sim, Shuzhen; Hibberd, Martin L; (2016) Genomic approaches for understanding dengue: insights from the virus, vector, and host. Genome Biol, 17 (1). 38-. ISSN 1474-760X DOI: https://doi.org/10.1186/s13059-016-0907-2

Sung, Cynthia; Wei, Yuan; Watanabe, Satoru; Lee, How Sung; Khoo, Yok Moi; Fan, Lu; Rathore, Abhay PS; Chan, Kitti Wing-Ki; Choy, Milly M; Kamaraj, Uma S; +11 more... Sessions, October M; Aw, Pauline; de Sessions, Paola F; Lee, Bernett; Connolly, John E; Hibberd, Martin L; Vijaykrishna, Dhanasekaran; Wijaya, Limin; Ooi, Eng Eong; Low, Jenny Guek-Hong; Vasudevan, Subhash G; (2016) Extended Evaluation of Virological, Immunological and Pharmacokinetic Endpoints of CELADEN: A Randomized, Placebo-Controlled Trial of Celgosivir in Dengue Fever Patients. PLoS neglected tropical diseases, 10 (8). e0004851-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004851

Cheng, Ching-Yu; Yamashiro, Kenji; Chen, Li Jia; Ahn, Jeeyun; Huang, Lulin; Huang, Lvzhen; Cheung, Chui Ming G; Miyake, Masahiro; Cackett, Peter D; Yeo, Ian Y; +94 more... Laude, Augustinus; Mathur, Ranjana; Pang, Junxiong; Sim, Kar Seng; Koh, Adrian H; Chen, Peng; Lee, Shu Yen; Wong, Doric; Chan, Choi Mun; Loh, Boon Kwang; Sun, Yaoyao; Davila, Sonia; Nakata, Isao; Nakanishi, Hideo; Akagi-Kurashige, Yumiko; Gotoh, Norimoto; Tsujikawa, Akitaka; Matsuda, Fumihiko; Mori, Keisuke; Yoneya, Shin; Sakurada, Yoichi; Iijima, Hiroyuki; Iida, Tomohiro; Honda, Shigeru; Lai, Timothy Yuk Yau; Tam, Pancy Oi Sin; Chen, Haoyu; Tang, Shibo; Ding, Xiaoyan; Wen, Feng; Lu, Fang; Zhang, Xiongze; Shi, Yi; Zhao, Peiquan; Zhao, Bowen; Sang, Jinghong; Gong, Bo; Dorajoo, Rajkumar; Yuan, Jian-Min; Koh, Woon-Puay; van Dam, Rob M; Friedlander, Yechiel; Lin, Ying; Hibberd, Martin L; Foo, Jia Nee; Wang, Ningli; Wong, Chang Hua; Tan, Gavin S; Park, Sang Jun; Bhargava, Mayuri; Gopal, Lingam; Naing, Thet; Liao, Jiemin; Ong, Peng Guan; Mitchell, Paul; Zhou, Peng; Xie, Xuefeng; Liang, Jinlong; Mei, Junpu; Jin, Xin; Saw, Seang-Mei; Ozaki, Mineo; Mizoguchi, Takanori; Kurimoto, Yasuo; Woo, Se Joon; Chung, Hum; Yu, Hyeong-Gon; Shin, Joo Young; Park, Dong Ho; Kim, In Taek; Chang, Woohyok; Sagong, Min; Lee, Sang-Joon; Kim, Hyun Woong; Lee, Ji Eun; Li, Yi; Liu, Jianjun; Teo, Yik Ying; Heng, Chew Kiat; Lim, Tock Han; Yang, Suk-Kyun; Song, Kyuyoung; Vithana, Eranga N; Aung, Tin; Bei, Jin Xin; Zeng, Yi Xin; Tai, E Shyong; Li, Xiao Xin; Yang, Zhenglin; Park, Kyu-Hyung; Pang, Chi Pui; Yoshimura, Nagahisa; Wong, Tien Yin; Khor, Chiea Chuen; (2015) New loci and coding variants confer risk for age-related macular degeneration in East Asians. Nature communications, 6 (1). 6063-. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms7063

Do, Lien Anh Ha; Wilm, Andreas; van Doorn, H Rogier; Lam, Ha Minh; Sim, Shuzhen; Sukumaran, Rashmi; Tran, Anh Tuan; Nguyen, Bach Hue; Tran, Thi Thu Loan; Tran, Quynh Huong; +20 more... Vo, Quoc Bao; Dac, Nguyen Anh Tran; Trinh, Hong Nhien; Nguyen, Thi Thanh Hai; Binh, Bao Tinh Le; Le, Khanh; Nguyen, Minh Tien; Thai, Quang Tung; Vo, Thanh Vu; Ngo, Ngoc Quang Minh; Dang, Thi Kim Huyen; Cao, Ngoc Huong; Tran, Thu Van; Ho, Lu Viet; Farrar, Jeremy; de Jong, Menno; Chen, Swaine; Nagarajan, Niranjan; Bryant, Juliet E; Hibberd, Martin L; (2015) Direct whole-genome deep-sequencing of human respiratory syncytial virus A and B from Vietnamese children identifies distinct patterns of inter- and intra-host evolution. The Journal of general virology, 96 (12). pp. 3470-3483. ISSN 0022-1317 DOI: https://doi.org/10.1099/jgv.0.000298 Full text not available from this repository.

Jauneikaite, Elita; Tocheva, Anna S; Jefferies, Johanna MC; Gladstone, Rebecca A; Faust, Saul N; Christodoulides, Myron; Hibberd, Martin L; Clarke, Stuart C; (2015) Current methods for capsular typing of Streptococcus pneumoniae. Journal of microbiological methods, 113. pp. 41-49. ISSN 0167-7012 DOI: https://doi.org/10.1016/j.mimet.2015.03.006 Full text not available from this repository.

Lee, Guan-Huei; Tan, Boon-Huan; Teo, Esmeralda Chi-Yuan; Lim, Seng-Gee; Dan, Yock-Young; Wee, Aileen; Aw, Pauline Poh Kim; Zhu, Yuan; Hibberd, Martin Lloyd; Tan, Chee-Kiat; +2 more... Purdy, Michael A; Teo, Chong-Gee; (2015) Chronic Infection With Camelid Hepatitis E Virus in a Liver Transplant Recipient Who Regularly Consumes Camel Meat and Milk. Gastroenterology, 150 (2). 355-7.e3. ISSN 0016-5085 DOI: https://doi.org/10.1053/j.gastro.2015.10.048 Full text not available from this repository.

Maurer-Stroh, Sebastian; Lee, Charlie WH; Patel, Champa; Lucero, Marilla; Nohynek, Hanna; Sung, Wing-Kin; Murad, Chrysanti; Ma, Jianmin; Hibberd, Martin L; Wong, Christopher W; +1 more... Simões, Eric AF; (2015) Comparison of microarray-predicted closest genomes to sequencing for poliovirus vaccine strain similarity and influenza A phylogeny. Diagnostic microbiology and infectious disease, 84 (3). pp. 203-206. ISSN 0732-8893 DOI: https://doi.org/10.1016/j.diagmicrobio.2015.11.003

Sim, Shuzhen; Aw, Pauline PK; Wilm, Andreas; Teoh, Garrett; Hue, Kien Duong Thi; Nguyen, Nguyet Minh; Nagarajan, Niranjan; Simmons, Cameron P; Hibberd, Martin L; (2015) Tracking Dengue Virus Intra-host Genetic Diversity during Human-to-Mosquito Transmission. PLoS neglected tropical diseases, 9 (9). e0004052-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004052

del Rosario, Ricardo Cruz-Herrera; Poschmann, Jeremie; Rouam, Sigrid Laure; Png, Eileen; Khor, Chiea Chuen; Hibberd, Martin Lloyd; Prabhakar, Shyam; (2015) Sensitive detection of chromatin-altering polymorphisms reveals autoimmune disease mechanisms. Nature methods, 12 (5). pp. 458-464. ISSN 1548-7091 DOI: https://doi.org/10.1038/nmeth.3326 Full text not available from this repository.

Anderson, Suzanne T; Kaforou, Myrsini; Brent, Andrew J; Wright, Victoria J; Banwell, Claire M; Chagaluka, George; Crampin, Amelia C; Dockrell, Hazel M; French, Neil; Hamilton, Melissa S; +15 more... Hibberd, Martin L; Kern, Florian; Langford, Paul R; Ling, Ling; Mlotha, Rachel; Ottenhoff, Tom HM; Pienaar, Sandy; Pillay, Vashini; Scott, J Anthony G; Twahir, Hemed; Wilkinson, Robert J; Coin, Lachlan J; Heyderman, Robert S; Levin, Michael; Eley, Brian; (2014) Diagnosis of childhood tuberculosis and host RNA expression in Africa. The New England journal of medicine, 370 (18). pp. 1712-1723. ISSN 0028-4793 DOI: https://doi.org/10.1056/NEJMoa1303657

Aw, Pauline Poh Kim; de Sessions, Paola Florez; Wilm, Andreas; Hoang, Long Truong; Nagarajan, Niranjan; Sessions, October M; Hibberd, Martin Lloyd; (2014) Next-generation whole genome sequencing of dengue virus. Methods in molecular biology (Clifton, NJ), 1138. pp. 175-195. ISSN 1064-3745 DOI: https://doi.org/10.1007/978-1-4939-0348-1_12 Full text not available from this repository.

Bellos, Evangelos; Kumar, Vikrant; Lin, Clarabelle; Maggi, Jordi; Phua, Zai Yang; Cheng, Ching-Yu; Cheung, Chui Ming Gemmy; Hibberd, Martin L; Wong, Tien Yin; Coin, Lachlan JM; +1 more... Davila, Sonia; (2014) cnvCapSeq: detecting copy number variation in long-range targeted resequencing data. Nucleic acids research, 42 (20). e158-. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gku849

Chan, Kuan Rong; Ong, Eugenia Z; Tan, Hwee Cheng; Zhang, Summer Li-Xin; Zhang, Qian; Tang, Kin Fai; Kaliaperumal, Nivashini; Lim, Angeline Pei Chiew; Hibberd, Martin L; Chan, Soh Ha; +6 more... Connolly, John E; Krishnan, Manoj N; Lok, Shee Mei; Hanson, Brendon J; Lin, Chao-Nan; Ooi, Eng Eong; (2014) Leukocyte immunoglobulin-like receptor B1 is critical for antibody-dependent dengue. Proceedings of the National Academy of Sciences of the United States of America, 111 (7). pp. 2722-2727. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1317454111 Full text not available from this repository.

Dunstan, Sarah J; Hue, Nguyen Thi; Han, Buhm; Li, Zheng; Tram, Trinh Thi Bich; Sim, Kar Seng; Parry, Christopher M; Chinh, Nguyen Tran; Vinh, Ha; Lan, Nguyen Phu Huong; +26 more... Thieu, Nga Tran Vu; Vinh, Phat Voong; Koirala, Samir; Dongol, Sabina; Arjyal, Amit; Karkey, Abhilasha; Shilpakar, Olita; Dolecek, Christiane; Foo, Jia Nee; Phuong, Le Thi; Lanh, Mai Ngoc; Do, Tan; Aung, Tin; Hon, Do Nu; Teo, Yik Ying; Hibberd, Martin L; Anders, Katherine L; Okada, Yukinori; Raychaudhuri, Soumya; Simmons, Cameron P; Baker, Stephen; de Bakker, Paul IW; Basnyat, Buddha; Hien, Tran Tinh; Farrar, Jeremy J; Khor, Chiea Chuen; (2014) Variation at HLA-DRB1 is associated with resistance to enteric fever. Nature genetics, 46 (12). pp. 1333-1336. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3143 Full text not available from this repository.

Hoang, Long Truong; Shimizu, Chisato; Ling, Ling; Naim, Ahmad Nazri Mohamed; Khor, Chiea Chuen; Tremoulet, Adriana H; Wright, Victoria; Levin, Michael; Hibberd, Martin L; Burns, Jane C; (2014) Global gene expression profiling identifies new therapeutic targets in acute Kawasaki disease. Genome medicine, 6 (11). 541-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-014-0102-6

Hoang, Long Truong; Tolfvenstam, Thomas; Ooi, Eng Eong; Khor, Chiea Chuen; Naim, Ahmand Nazri Mohamed; Ho, Eliza Xin Pei; Ong, Swee Hoe; Wertheim, Heiman F; Fox, Annette; Van Vinh Nguyen, Chau; +17 more... Nghiem, Ngoc My; Ha, Tuan Manh; Thi Ngoc Tran, Anh; Tambayah, Paul; Lin, Raymond; Sangsajja, Chariya; Manosuthi, Weerawat; Chuchottaworn, Chareon; Sansayunh, Piamlarp; Chotpitayasunondh, Tawee; Suntarattiwong, Piyarat; Chokephaibulkit, Kulkanya; Puthavathana, Pilaipan; de Jong, Menno D; Farrar, Jeremy; van Doorn, H Rogier; Hibberd, Martin Lloyd; (2014) Patient-based transcriptome-wide analysis identify interferon and ubiquination pathways as potential predictors of influenza A disease severity. PloS one, 9 (11). e111640-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0111640

Hong, Lewis Z; Hong, Shuzhen; Wong, Han Teng; Aw, Pauline PK; Cheng, Yan; Wilm, Andreas; de Sessions, Paola F; Lim, Seng Gee; Nagarajan, Niranjan; Hibberd, Martin L; +2 more... Quake, Stephen R; Burkholder, William F; (2014) BAsE-Seq: a method for obtaining long viral haplotypes from short sequence reads. Genome Biol, 15 (11). 517-. ISSN 1474-760X DOI: https://doi.org/10.1186/PREACCEPT-6768001251451949

Low, Jenny G; Sung, Cynthia; Wijaya, Limin; Wei, Yuan; Rathore, Abhay PS; Watanabe, Satoru; Tan, Boon Hian; Toh, Liying; Chua, Lian Tee; Hou, Yan'an; +15 more... Chow, Angelia; Howe, Shiqin; Chan, Wing Ki; Tan, Kah Hin; Chung, Jasmine S; Cherng, Benjamin P; Lye, David C; Tambayah, Paul A; Ng, Lee Ching; Connolly, John; Hibberd, Martin L; Leo, Yee Sin; Cheung, Yin Bun; Ooi, Eng Eong; Vasudevan, Subhash G; (2014) Efficacy and safety of celgosivir in patients with dengue fever (CELADEN): a phase 1b, randomised, double-blind, placebo-controlled, proof-of-concept trial. The Lancet infectious diseases, 14 (8). pp. 706-715. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(14)70730-3 Full text not available from this repository.

Wang, Shugui; Hibberd, Martin Lloyd; Pettersson, Sven; Lee, Yuan Kun; (2014) Enterococcus faecalis from healthy infants modulates inflammation through MAPK signaling pathways. PloS one, 9 (5). e97523-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0097523

Chang, Chia-Jung; Kuo, Ho-Chang; Chang, Jeng-Sheng; Lee, Jong-Keuk; Tsai, Fuu-Jen; Khor, Chiea Chuen; Chang, Li-Ching; Chen, Shih-Ping; Ko, Tai-Ming; Liu, Yi-Min; +16 more... Chen, Ying-Ju; Hong, Young Mi; Jang, Gi Young; Hibberd, Martin L; Kuijpers, Taco; Burgner, David; Levin, Michael; Burns, Jane C; Davila, Sonia; International Kawasaki Disease Genetics Consortium; Korean Kawasaki Disease Genetics Consortium; Taiwan Kawasaki Disease Genetics Consortium; Chen, Yuan-Tsong; Chen, Chien-Hsiun; Wu, Jer-Yuarn; Lee, Yi-Ching; (2013) Replication and meta-analysis of GWAS identified susceptibility loci in Kawasaki disease confirm the importance of B lymphoid tyrosine kinase (BLK) in disease susceptibility. PloS one, 8 (8). e72037-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0072037

Gehre, Florian; Otu, Jacob; DeRiemer, Kathryn; de Sessions, Paola Florez; Hibberd, Martin L; Mulders, Wim; Corrah, Tumani; de Jong, Bouke C; Antonio, Martin; (2013) Deciphering the growth behaviour of Mycobacterium africanum. PLoS neglected tropical diseases, 7 (5). e2220-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0002220

Hibberd, Martin L; (2013) Microbial genomics: an increasingly revealing interface in human health and disease. Genome medicine, 5 (4). 31-. ISSN 1756-994X DOI: https://doi.org/10.1186/gm435

Kaforou, Myrsini; Wright, Victoria J; Oni, Tolu; French, Neil; Anderson, Suzanne T; Bangani, Nonzwakazi; Banwell, Claire M; Brent, Andrew J; Crampin, Amelia C; Dockrell, Hazel M; +12 more... Eley, Brian; Heyderman, Robert S; Hibberd, Martin L; Kern, Florian; Langford, Paul R; Ling, Ling; Mendelson, Marc; Ottenhoff, Tom H; Zgambo, Femia; Wilkinson, Robert J; Coin, Lachlan J; Levin, Michael; (2013) Detection of tuberculosis in HIV-infected and -uninfected African adults using whole blood RNA expression signatures: a case-control study. PLoS medicine, 10 (10). e1001538-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1001538

Murima, Paul; de Sessions, Paola Florez; Lim, Vivian; Naim, Ahmad Nazri Mohamed; Bifani, Pablo; Boshoff, Helena IM; Sambandamurthy, Vasan K; Dick, Thomas; Hibberd, Martin L; Schreiber, Mark; +1 more... Rao, Srinivasa PS; (2013) Exploring the mode of action of bioactive compounds by microfluidic transcriptional profiling in mycobacteria. PloS one, 8 (7). e69191-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0069191

Nguyen, Thi Hanh Tien; Nguyen, Than Ha Quyen; Vu, Tuan Trung; Farrar, Jeremy; Hoang, Truong Long; Dong, Thi Hoai Tam; Ngoc Tran, Van; Phung, Khanh Lam; Wolbers, Marcel; Whitehead, Stephen S; +3 more... Hibberd, Martin L; Wills, Bridget; Simmons, Cameron P; (2013) Corticosteroids for dengue - why don't they work? PLoS neglected tropical diseases, 7 (12). e2592-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0002592

Nookaew, Intawat; Thorell, Kaisa; Worah, Kuntal; Wang, Shugui; Hibberd, Martin Lloyd; Sjövall, Henrik; Pettersson, Sven; Nielsen, Jens; Lundin, Samuel B; (2013) Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker. BMC medical genomics, 6 (1). 41-. ISSN 1755-8794 DOI: https://doi.org/10.1186/1755-8794-6-41

Ogata, Shohei; Shimizu, Chisato; Franco, Alessandra; Touma, Ranim; Kanegaye, John T; Choudhury, Biswa P; Naidu, Natasha N; Kanda, Yutaka; Hoang, Long T; Hibberd, Martin L; +3 more... Tremoulet, Adriana H; Varki, Ajit; Burns, Jane C; (2013) Treatment response in Kawasaki disease is associated with sialylation levels of endogenous but not therapeutic intravenous immunoglobulin G. PloS one, 8 (12). e81448-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0081448

Ong, Swee Hoe; Kukkillaya, Vinutha Uppoor; Wilm, Andreas; Lay, Christophe; Ho, Eliza Xin Pei; Low, Louie; Hibberd, Martin Lloyd; Nagarajan, Niranjan; (2013) Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences. PloS one, 8 (4). e60811-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0060811

Simões, Eric AF; Patel, Champa; Sung, Wing-Kin; Lee, Charlie WH; Loh, Kuan Hon; Lucero, Marilla; Nohynek, Hanna; Nai, Geraldine; Thien, Pei Ling; Koh, Chee Wee; +7 more... Chan, Yang Sun; Ma, Jianmin; Maurer-Stroh, Sebastian; Carosone-Link, Phyllis; Hibberd, Martin L; Wong, Christopher W; ARIVAC Consortium; (2013) Pathogen chip for respiratory tract infections. Journal of clinical microbiology, 51 (3). pp. 945-953. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.02317-12 Full text not available from this repository.

Sridharan, Aishwarya; Chen, Qingfeng; Tang, Kin Fai; Ooi, Eng Eong; Hibberd, Martin L; Chen, Jianzhu; (2013) Inhibition of megakaryocyte development in the bone marrow underlies dengue virus-induced thrombocytopenia in humanized mice. Journal of virology, 87 (21). pp. 11648-11658. ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.01156-13 Full text not available from this repository.

Tan, Anthony T; Hoang, Long Truong; Chin, Daniel; Rasmussen, Erik; Lopatin, Uri; Hart, Stefan; Bitter, Hans; Chu, Tom; Gruenbaum, Lore; Ravindran, Palani; +8 more... Zhong, Hua; Gane, Ed; Lim, Seng Gee; Chow, Wan Cheng; Chen, Pei-Jer; Petric, Rosemary; Bertoletti, Antonio; Hibberd, Martin Lloyd; (2013) Reduction of HBV replication prolongs the early immunological response to IFNα therapy. Journal of hepatology, 60 (1). pp. 54-61. ISSN 0168-8278 DOI: https://doi.org/10.1016/j.jhep.2013.08.020 Full text not available from this repository.

Whitehorn, James; Chau, Tran Nguyen Bich; Nguyet, Nguyen Minh; Kien, Duong Thi Hue; Quyen, Nguyen Than Ha; Trung, Dinh The; Pang, Junxiong; Wills, Bridget; Van Vinh Chau, Nguyen; Farrar, Jeremy; +3 more... Hibberd, Martin L; Khor, Chiea Chuen; Simmons, Cameron P; (2013) Genetic variants of MICB and PLCE1 and associations with non-severe dengue. PloS one, 8 (3). e59067-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0059067

Wiszniewski, Wojciech; Hunter, Jill V; Hanchard, Neil A; Willer, Jason R; Shaw, Chad; Tian, Qi; Illner, Anna; Wang, Xueqing; Cheung, Sau W; Patel, Ankita; +56 more... Campbell, Ian M; Gelowani, Violet; Hixson, Patricia; Ester, Audrey R; Azamian, Mahshid S; Potocki, Lorraine; Zapata, Gladys; Hernandez, Patricia P; Ramocki, Melissa B; Santos-Cortez, Regie LP; Wang, Gao; York, Michele K; Justice, Monica J; Chu, Zili D; Bader, Patricia I; Omo-Griffith, Lisa; Madduri, Nirupama S; Scharer, Gunter; Crawford, Heather P; Yanatatsaneejit, Pattamawadee; Eifert, Anna; Kerr, Jeffery; Bacino, Carlos A; Franklin, Adiaha IA; Goin-Kochel, Robin P; Simpson, Gayle; Immken, Ladonna; Haque, Muhammad E; Stosic, Marija; Williams, Misti D; Morgan, Thomas M; Pruthi, Sumit; Omary, Reed; Boyadjiev, Simeon A; Win, Kay K; Thida, Aye; Hurles, Matthew; Hibberd, Martin Lloyd; Khor, Chiea Chuen; Van Vinh Chau, Nguyen; Gallagher, Thomas E; Mutirangura, Apiwat; Stankiewicz, Pawel; Beaudet, Arthur L; Maletic-Savatic, Mirjana; Rosenfeld, Jill A; Shaffer, Lisa G; Davis, Erica E; Belmont, John W; Dunstan, Sarah; Simmons, Cameron P; Bonnen, Penelope E; Leal, Suzanne M; Katsanis, Nicholas; Lupski, James R; Lalani, Seema R; (2013) TM4SF20 ancestral deletion and susceptibility to a pediatric disorder of early language delay and cerebral white matter hyperintensities. American journal of human genetics, 93 (2). pp. 197-210. ISSN 0002-9297 DOI: https://doi.org/10.1016/j.ajhg.2013.05.027 Full text not available from this repository.

Breunis, Willemijn B; Davila, Sonia; Shimizu, Chisato; Oharaseki, Toshiaki; Takahashi, Kei; van Houdt, Michel; Khor, Chiea Chuen; Wright, Victoria J; Levin, Michael; Burns, Jane C; +4 more... Burgner, David; Hibberd, Martin L; Kuijpers, Taco W; International Kawasaki Disease Genetics Consortium; (2012) Disruption of vascular homeostasis in patients with Kawasaki disease: involvement of vascular endothelial growth factor and angiopoietins. Arthritis and rheumatism, 64 (1). pp. 306-315. ISSN 0004-3591 DOI: https://doi.org/10.1002/art.33316 Full text not available from this repository.

Cornes, Belinda K; Khor, Chiea Chuen; Nongpiur, Monisha E; Xu, Liang; Tay, Wan-Ting; Zheng, Yingfeng; Lavanya, Raghavan; Li, Yang; Wu, Renyi; Sim, Xueling; +14 more... Wang, Ya-Xing; Chen, Peng; Teo, Yik Ying; Chia, Kee-Seng; Seielstad, Mark; Liu, Jianjun; Hibberd, Martin L; Cheng, Ching-Yu; Saw, Seang-Mei; Tai, E-Shyong; Jonas, Jost B; Vithana, Eranga N; Wong, Tien Y; Aung, Tin; (2012) Identification of four novel variants that influence central corneal thickness in multi-ethnic Asian populations. Human molecular genetics, 21 (2). pp. 437-445. ISSN 0964-6906 DOI: https://doi.org/10.1093/hmg/ddr463 Full text not available from this repository.

Jauneikaite, E; Jefferies, JM; Hibberd, ML; Clarke, SC; (2012) Prevalence of Streptococcus pneumoniae serotypes causing invasive and non-invasive disease in South East Asia: a review. Vaccine, 30 (24). pp. 3503-3514. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2012.03.066 Full text not available from this repository.

Khor, Chiea Chuen; Hibberd, Martin L; (2012) Host-pathogen interactions revealed by human genome-wide surveys. Trends in genetics, 28 (5). pp. 233-243. ISSN 0168-9525 DOI: https://doi.org/10.1016/j.tig.2012.02.001 Full text not available from this repository.

Nagarajan, Niranjan; Bertrand, Denis; Hillmer, Axel M; Zang, Zhi Jiang; Yao, Fei; Jacques, Pierre-Étienne; Teo, Audrey SM; Cutcutache, Ioana; Zhang, Zhenshui; Lee, Wah Heng; +28 more... Sia, Yee Yen; Gao, Song; Ariyaratne, Pramila N; Ho, Andrea; Woo, Xing Yi; Veeravali, Lavanya; Ong, Choon Kiat; Deng, Niantao; Desai, Kartiki V; Khor, Chiea Chuen; Hibberd, Martin L; Shahab, Atif; Rao, Jaideepraj; Wu, Mengchu; Teh, Ming; Zhu, Feng; Chin, Sze Yung; Pang, Brendan; So, Jimmy BY; Bourque, Guillaume; Soong, Richie; Sung, Wing-Kin; Tean Teh, Bin; Rozen, Steven; Ruan, Xiaoan; Yeoh, Khay Guan; Tan, Patrick BO; Ruan, Yijun; (2012) Whole-genome reconstruction and mutational signatures in gastric cancer. Genome biology, 13 (12). R115-. ISSN 1465-6906 DOI: https://doi.org/10.1186/gb-2012-13-12-r115

Nguyen, Nguyet Minh; Tran, Chau Nguyen Bich; Phung, Lam Khanh; Duong, Kien Thi Hue; Huynh, Huy le Anh; Farrar, Jeremy; Nguyen, Quyen Than Ha; Tran, Hien Tinh; Nguyen, Chau Van Vinh; Merson, Laura; +15 more... Hoang, Long Truong; Hibberd, Martin L; Aw, Pauline PK; Wilm, Andreas; Nagarajan, Niranjan; Nguyen, Dung Thi; Pham, Mai Phuong; Nguyen, Truong Thanh; Javanbakht, Hassan; Klumpp, Klaus; Hammond, Janet; Petric, Rosemary; Wolbers, Marcel; Nguyen, Chinh Tran; Simmons, Cameron P; (2012) A randomized, double-blind placebo controlled trial of balapiravir, a polymerase inhibitor, in adult dengue patients. The Journal of infectious diseases, 207 (9). pp. 1442-1450. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jis470

Ottenhoff, Tom HM; Dass, Ranjeeta Hari; Yang, Ninghan; Zhang, Mingzi M; Wong, Hazel EE; Sahiratmadja, Edhyana; Khor, Chiea Chuen; Alisjahbana, Bachti; van Crevel, Reinout; Marzuki, Sangkot; +3 more... Seielstad, Mark; van de Vosse, Esther; Hibberd, Martin L; (2012) Genome-wide expression profiling identifies type 1 interferon response pathways in active tuberculosis. PloS one, 7 (9). e45839-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0045839

Pang, Junxiong; Salim, Agus; Lee, Vernon J; Hibberd, Martin L; Chia, Kee Seng; Leo, Yee Sin; Lye, David C; (2012) Diabetes with hypertension as risk factors for adult dengue hemorrhagic fever in a predominantly dengue serotype 2 epidemic: a case control study. PLoS neglected tropical diseases, 6 (5). e1641-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0001641

Png, Eileen; Alisjahbana, Bachti; Sahiratmadja, Edhyana; Marzuki, Sangkot; Nelwan, Ron; Adnan, Iskandar; van de Vosse, Esther; Hibberd, Martin; van Crevel, Reinout; Ottenhoff, Tom HM; +1 more... Seielstad, Mark; (2012) Polymorphisms in SP110 are not associated with pulmonary tuberculosis in Indonesians. Infection, genetics and evolution, 12 (6). pp. 1319-1323. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2012.04.006 Full text not available from this repository.

Png, Eileen; Alisjahbana, Bachti; Sahiratmadja, Edhyana; Marzuki, Sangkot; Nelwan, Ron; Balabanova, Yanina; Nikolayevskyy, Vladyslav; Drobniewski, Francis; Nejentsev, Sergey; Adnan, Iskandar; +5 more... van de Vosse, Esther; Hibberd, Martin L; van Crevel, Reinout; Ottenhoff, Tom HM; Seielstad, Mark; (2012) A genome wide association study of pulmonary tuberculosis susceptibility in Indonesians. BMC medical genetics, 13 (1). 5-. ISSN 1471-2350 DOI: https://doi.org/10.1186/1471-2350-13-5

Vithana, Eranga N; Khor, Chiea-Chuen; Qiao, Chunyan; Nongpiur, Monisha E; George, Ronnie; Chen, Li-Jia; Do, Tan; Abu-Amero, Khaled; Huang, Chor Kai; Low, Sancy; +69 more... Tajudin, Liza-Sharmini A; Perera, Shamira A; Cheng, Ching-Yu; Xu, Liang; Jia, Hongyan; Ho, Ching-Lin; Sim, Kar Seng; Wu, Ren-Yi; Tham, Clement CY; Chew, Paul TK; Su, Daniel H; Oen, Francis T; Sarangapani, Sripriya; Soumittra, Nagaswamy; Osman, Essam A; Wong, Hon-Tym; Tang, Guangxian; Fan, Sujie; Meng, Hailin; Huong, Dao TL; Wang, Hua; Feng, Bo; Baskaran, Mani; Shantha, Balekudaru; Ramprasad, Vedam L; Kumaramanickavel, Govindasamy; Iyengar, Sudha K; How, Alicia C; Lee, Kelvin Y; Sivakumaran, Theru A; Yong, Victor HK; Ting, Serena ML; Li, Yang; Wang, Ya-Xing; Tay, Wan-Ting; Sim, Xueling; Lavanya, Raghavan; Cornes, Belinda K; Zheng, Ying-Feng; Wong, Tina T; Loon, Seng-Chee; Yong, Vernon KY; Waseem, Naushin; Yaakub, Azhany; Chia, Kee-Seng; Allingham, R Rand; Hauser, Michael A; Lam, Dennis SC; Hibberd, Martin L; Bhattacharya, Shomi S; Zhang, Mingzhi; Teo, Yik Ying; Tan, Donald T; Jonas, Jost B; Tai, E-Shyong; Saw, Seang-Mei; Hon, Do Nhu; Al-Obeidan, Saleh A; Liu, Jianjun; Chau, Tran Nguyen Bich; Simmons, Cameron P; Bei, Jin-Xin; Zeng, Yi-Xin; Foster, Paul J; Vijaya, Lingam; Wong, Tien-Yin; Pang, Chi-Pui; Wang, Ningli; Aung, Tin; (2012) Genome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma. Nature genetics, 44 (10). pp. 1142-1146. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.2390 Full text not available from this repository.

Wilm, Andreas; Aw, Pauline Poh Kim; Bertrand, Denis; Yeo, Grace Hui Ting; Ong, Swee Hoe; Wong, Chang Hua; Khor, Chiea Chuen; Petric, Rosemary; Hibberd, Martin Lloyd; Nagarajan, Niranjan; (2012) LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets. Nucleic acids research, 40 (22). pp. 11189-11201. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gks918

Wong, Michelle; Öhrmalm, Lars; Broliden, Kristina; Aust, Carl; Hibberd, Martin; Tolfvenstam, Thomas; (2012) Mannose-binding lectin 2 polymorphisms do not influence frequency or type of infection in adults with chemotherapy induced neutropaenia. PloS one, 7 (2). e30819-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0030819

Balakrishnan, Thavamalar; Bela-Ong, Dennis B; Toh, Ying Xiu; Flamand, Marie; Devi, Shamala; Koh, Mickey B; Hibberd, Martin L; Ooi, Eng Eong; Low, Jenny G; Leo, Yee Sin; +2 more... Gu, Feng; Fink, Katja; (2011) Dengue virus activates polyreactive, natural IgG B cells after primary and secondary infection. PloS one, 6 (12). e29430-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0029430

Diaz Heijtz, Rochellys; Wang, Shugui; Anuar, Farhana; Qian, Yu; Björkholm, Britta; Samuelsson, Annika; Hibberd, Martin L; Forssberg, Hans; Pettersson, Sven; (2011) Normal gut microbiota modulates brain development and behavior. Proceedings of the National Academy of Sciences of the United States of America, 108 (7). pp. 3047-3052. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1010529108 Full text not available from this repository.

Khor, Chiea Chuen; Chau, Tran Nguyen Bich; Pang, Junxiong; Davila, Sonia; Long, Hoang Truong; Ong, Rick TH; Dunstan, Sarah J; Wills, Bridget; Farrar, Jeremy; Van Tram, Ta; +16 more... Gan, Tran Thi; Binh, Nguyen Thi Nguyet; Tri, Le Trung; Lien, Le Bich; Tuan, Nguyen Minh; Tham, Nguyen Thi Hong; Lanh, Mai Ngoc; Nguyet, Nguyen Minh; Hieu, Nguyen Trong; Van N Vinh Chau, Nguyen; Thuy, Tran Thi; Tan, Dennis EK; Sakuntabhai, Anavaj; Teo, Yik-Ying; Hibberd, Martin L; Simmons, Cameron P; (2011) Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1. Nature genetics, 43 (11). pp. 1139-1141. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.960

Khor, Chiea Chuen; Davila, Sonia; Breunis, Willemijn B; Lee, Yi-Ching; Shimizu, Chisato; Wright, Victoria J; Yeung, Rae SM; Tan, Dennis EK; Sim, Kar Seng; Wang, Jie Jin; +22 more... Wong, Tien Yin; Pang, Junxiong; Mitchell, Paul; Cimaz, Rolando; Dahdah, Nagib; Cheung, Yiu-Fai; Huang, Guo-Ying; Yang, Wanling; Park, In-Sook; Lee, Jong-Keuk; Wu, Jer-Yuarn; Levin, Michael; Burns, Jane C; Burgner, David; Kuijpers, Taco W; Hibberd, Martin L; Hong Kong–Shanghai Kawasaki Disease Genetics Consortium; Korean Kawasaki Disease Genetics Consortium; Taiwan Kawasaki Disease Genetics Consortium; International Kawasaki Disease Genetics Consortium; US Kawasaki Disease Genetics Consortium; Blue Mountains Eye Study; (2011) Genome-wide association study identifies FCGR2A as a susceptibility locus for Kawasaki disease. Nature genetics, 43 (12). pp. 1241-1246. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.981 Full text not available from this repository.

Khor, Chiea Chuen; Davila, Sonia; Shimizu, Chisato; Sheng, Stephanie; Matsubara, Tomoyo; Suzuki, Yasuo; Newburger, Jane W; Baker, Annette; Burgner, David; Breunis, Willemijn; +6 more... Kuijpers, Taco; Wright, Victoria J; Levin, Michael; Hibberd, Martin L; Burns, Jane C; US and International Kawasaki Disease Genetics Consortia; (2011) Genome-wide linkage and association mapping identify susceptibility alleles in ABCC4 for Kawasaki disease. Journal of medical genetics, 48 (7). pp. 467-472. ISSN 0022-2593 DOI: https://doi.org/10.1136/jmg.2010.086611 Full text not available from this repository.

Khor, Chiea Chuen; Ramdas, Wishal D; Vithana, Eranga N; Cornes, Belinda K; Sim, Xueling; Tay, Wan-Ting; Saw, Seang-Mei; Zheng, Yingfeng; Lavanya, Raghavan; Wu, Renyi; +15 more... Wang, Jie Jin; Mitchell, Paul; Uitterlinden, André G; Rivadeneira, Fernando; Teo, Yik-Ying; Chia, Kee-Seng; Seielstad, Mark; Hibberd, Martin; Vingerling, Johannes R; Klaver, Caroline CW; Jansonius, Nomdo M; Tai, E-Shyong; Wong, Tien-Yin; van Duijn, Cornelia M; Aung, Tin; (2011) Genome-wide association studies in Asians confirm the involvement of ATOH7 and TGFBR3, and further identify CARD10 as a novel locus influencing optic disc area. Human molecular genetics, 20 (9). pp. 1864-1872. ISSN 0964-6906 DOI: https://doi.org/10.1093/hmg/ddr060 Full text not available from this repository.

Khor, Chiea-Chuen; Hibberd, Martin L; (2011) Revealing the molecular signatures of host-pathogen interactions. Genome biology, 12 (10). 229-. ISSN 1465-6906 DOI: https://doi.org/10.1186/gb-2011-12-10-229

Kumaria, Rajni; Iyer, Laxmi Ravi; Hibberd, Martin L; Simões, Eric AF; Sugrue, Richard J; (2011) Whole genome characterization of non-tissue culture adapted HRSV strains in severely infected children. Virology journal, 8 (1). 372-. ISSN 1743-422X DOI: https://doi.org/10.1186/1743-422X-8-372

Low, Jenny GH; Ong, Adrian; Tan, Li Kiang; Chaterji, Shera; Chow, Angelia; Lim, Wen Yan; Lee, Koon Wui; Chua, Robert; Chua, Choon Rong; Tan, Sharon WS; +6 more... Cheung, Yin Bun; Hibberd, Martin L; Vasudevan, Subhash G; Ng, Lee-Ching; Leo, Yee Sin; Ooi, Eng Eong; (2011) The early clinical features of dengue in adults: challenges for early clinical diagnosis. PLoS neglected tropical diseases, 5 (5). e1191-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0001191

Rodriguez-Roche, Rosmari; Villegas, Elci; Cook, Shelley; Poh Kim, Pauline AW; Hinojosa, Yoandri; Rosario, Delfina; Villalobos, Iris; Bendezu, Herminia; Hibberd, Martin L; Guzman, Maria G; (2011) Population structure of the dengue viruses, Aragua, Venezuela, 2006-2007. Insights into dengue evolution under hyperendemic transmission. Infection, genetics and evolution, 12 (2). pp. 332-344. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2011.12.005

Simões, Eric AF; Mutyara, Kuswandewi; Soh, Shirlena; Agustian, Dwi; Hibberd, Martin L; Kartasasmita, Cissy B; (2011) The epidemiology of respiratory syncytial virus lower respiratory tract infections in children less than 5 years of age in Indonesia. The Pediatric infectious disease journal, 30 (9). pp. 778-784. ISSN 0891-3668 DOI: https://doi.org/10.1097/INF.0b013e318218ab9e Full text not available from this repository.

Thuong, NTT; Hawn, TR; Chau, TTH; Bang, ND; Yen, NTB; Thwaites, GE; Teo, YY; Seielstad, M; Hibberd, M; Lan, NTN; +3 more... Caws, M; Farrar, JJ; Dunstan, SJ; (2011) Epiregulin (EREG) variation is associated with susceptibility to tuberculosis. Genes and immunity, 13 (3). pp. 275-281. ISSN 1466-4879 DOI: https://doi.org/10.1038/gene.2011.83 Full text not available from this repository.

Tolfvenstam, Thomas; Lindblom, Anna; Schreiber, Mark J; Ling, Ling; Chow, Angelia; Ooi, Eng Eong; Hibberd, Martin L; (2011) Characterization of early host responses in adults with dengue disease. BMC infectious diseases, 11 (1). 209-. ISSN 1471-2334 DOI: https://doi.org/10.1186/1471-2334-11-209

Wong, Hazel En En; Li, Ming-Shi; Kroll, J Simon; Hibberd, Martin L; Langford, Paul R; (2011) Genome wide expression profiling reveals suppression of host defence responses during colonisation by Neisseria meningitides but not N. lactamica. PloS one, 6 (10). e26130-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0026130

Zhang, Furen; Liu, Hong; Chen, Shumin; Low, Huiqi; Sun, Liangdan; Cui, Yong; Chu, Tongsheng; Li, Yi; Fu, Xi'an; Yu, Yongxiang; +27 more... Yu, Gongqi; Shi, Benqing; Tian, Hongqing; Liu, Dianchang; Yu, Xiulu; Li, Jinghui; Lu, Nan; Bao, Fangfang; Yuan, Chunying; Liu, Jian; Liu, Huaxu; Zhang, Lin; Sun, Yonghu; Chen, Mingfei; Yang, Qing; Yang, Haitao; Yang, Rongde; Zhang, Lianhua; Wang, Qiang; Liu, Hong; Zuo, Fuguang; Zhang, Haizhen; Khor, Chiea Chuen; Hibberd, Martin L; Yang, Sen; Liu, Jianjun; Zhang, Xuejun; (2011) Identification of two new loci at IL23R and RAB32 that influence susceptibility to leprosy. Nature genetics, 43 (12). pp. 1247-1251. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.973 Full text not available from this repository.

Christenbury, Joseph G; Aw, Pauline PK; Ong, Swee Hoe; Schreiber, Mark J; Chow, Angelia; Gubler, Duane J; Vasudevan, Subhash G; Ooi, Eng Eong; Hibberd, Martin L; (2010) A method for full genome sequencing of all four serotypes of the dengue virus. Journal of virological methods, 169 (1). pp. 202-206. ISSN 0166-0934 DOI: https://doi.org/10.1016/j.jviromet.2010.06.013 Full text not available from this repository.

Davila, S; Froeling, FEM; Tan, A; Bonnard, C; Boland, GJ; Snippe, H; Hibberd, ML; Seielstad, M; (2010) New genetic associations detected in a host response study to hepatitis B vaccine. Genes and immunity, 11 (3). pp. 232-238. ISSN 1466-4879 DOI: https://doi.org/10.1038/gene.2010.1 Full text not available from this repository.

Davila, Sonia; Wright, Victoria J; Khor, Chiea Chuen; Sim, Kar Seng; Binder, Alexander; Breunis, Willemijn B; Inwald, David; Nadel, Simon; Betts, Helen; Carrol, Enitan D; +12 more... de Groot, Ronald; Hermans, Peter WM; Hazelzet, Jan; Emonts, Marieke; Lim, Chui Chin; Kuijpers, Taco W; Martinon-Torres, Federico; Salas, Antonio; Zenz, Werner; Levin, Michael; Hibberd, Martin L; International Meningococcal Genetics Consortium; (2010) Genome-wide association study identifies variants in the CFH region associated with host susceptibility to meningococcal disease. Nature genetics, 42 (9). pp. 772-776. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.640 Full text not available from this repository.

Hoang, Long Truong; Lynn, David J; Henn, Matt; Birren, Bruce W; Lennon, Niall J; Le, Phuong Thi; Duong, Kien Thi Hue; Nguyen, Tham Thi Hong; Mai, Lanh Ngoc; Farrar, Jeremy J; +2 more... Hibberd, Martin L; Simmons, Cameron P; (2010) The early whole-blood transcriptional signature of dengue virus and features associated with progression to dengue shock syndrome in Vietnamese children and young adults. Journal of virology, 84 (24). pp. 12982-12994. ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.01224-10 Full text not available from this repository.

Horby, P; Sudoyo, H; Viprakasit, V; Fox, A; Thai, PQ; Yu, H; Davila, S; Hibberd, M; Dunstan, SJ; Monteerarat, Y; +3 more... Farrar, JJ; Marzuki, S; Hien, NT; (2010) What is the evidence of a role for host genetics in susceptibility to influenza A/H5N1? Epidemiology and infection, 138 (11). pp. 1550-1558. ISSN 0950-2688 DOI: https://doi.org/10.1017/S0950268810000518

Khor, Chiea C; Hibberd, Martin L; (2010) Shared pathways to infectious disease susceptibility? Genome medicine, 2 (8). 52-. ISSN 1756-994X DOI: https://doi.org/10.1186/gm173

Ladhani, Shamez N; Davila, Sonia; Hibberd, Martin L; Heath, Paul T; Ramsay, Mary E; Slack, Mary PE; Pollard, Andrew J; Booy, Robert; (2010) Association between single-nucleotide polymorphisms in Mal/TIRAP and interleukin-10 genes and susceptibility to invasive haemophilus influenzae serotype b infection in immunized children. Clinical infectious diseases, 51 (7). pp. 761-767. ISSN 1058-4838 DOI: https://doi.org/10.1086/656236 Full text not available from this repository.

Ladhani, Shamez; Heath, Paul T; Aibara, Rashna J; Ramsay, Mary E; Slack, Mary PE; Hibberd, Martin L; Pollard, Andrew J; Moxon, E Richard; Booy, Robert; (2010) Long-term complications and risk of other serious infections following invasive Haemophilus influenzae serotype b disease in vaccinated children. Vaccine, 28 (10). pp. 2195-2200. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2009.12.057 Full text not available from this repository.

Lee, Charlie Wah Heng; Koh, Chee Wee; Chan, Yang Sun; Aw, Pauline Poh Kim; Loh, Kuan Hon; Han, Bing Ling; Thien, Pei Ling; Nai, Geraldine Yi Wen; Hibberd, Martin L; Wong, Christopher W; +1 more... Sung, Wing-Kin; (2010) Large-scale evolutionary surveillance of the 2009 H1N1 influenza A virus using resequencing arrays. Nucleic acids research, 38 (9). e111-. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkq089

Lee, Kim Sung; Lai, Yee Ling; Lo, Sharon; Barkham, Timothy; Aw, Pauline; Ooi, Peng Lim; Tai, Ji Choong; Hibberd, Martin; Johansson, Patrik; Khoo, Seow Poh; +1 more... Ng, Lee Ching; (2010) Dengue virus surveillance for early warning, Singapore. Emerging infectious diseases, 16 (5). pp. 847-849. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid1605.091006

Lee, Vernon J; Yap, Jonathan; Cook, Alex R; Chen, Mark I; Tay, Joshua K; Tan, Boon Huan; Loh, Jin Phang; Chew, Seok Wei; Koh, Wee Hong; Lin, Raymond; +8 more... Cui, Lin; Lee, Charlie WH; Sung, Wing-Kin; Wong, Christopher W; Hibberd, Martin L; Kang, Wee Lee; Seet, Benjamin; Tambyah, Paul A; (2010) Oseltamivir ring prophylaxis for containment of 2009 H1N1 influenza outbreaks. The New England journal of medicine, 362 (23). pp. 2166-2174. ISSN 0028-4793 DOI: https://doi.org/10.1056/NEJMoa0908482

Lee, Vernon J; Yap, Jonathan; Maurer-Stroh, Sebastian; Lee, Raphael TC; Eisenhaber, Frank; Tay, Joshua K; Ting, Pei Jun; Loh, Jin Phang; Wong, Christopher W; Tan, Boon Huan; +3 more... Koay, Evelyn SC; Kelly, Paul M; Hibberd, Martin L; (2010) Investigation of causes of oseltamivir chemoprophylaxis failures during influenza A (H1N1-2009) outbreaks. Journal of clinical virology, 50 (2). pp. 104-108. ISSN 1386-6532 DOI: https://doi.org/10.1016/j.jcv.2010.10.004 Full text not available from this repository.

McGovern, Dermot PB; Gardet, Agnès; Törkvist, Leif; Goyette, Philippe; Essers, Jonah; Taylor, Kent D; Neale, Benjamin M; Ong, Rick TH; Lagacé, Caroline; Li, Chun; +45 more... Green, Todd; Stevens, Christine R; Beauchamp, Claudine; Fleshner, Phillip R; Carlson, Marie; D'Amato, Mauro; Halfvarson, Jonas; Hibberd, Martin L; Lördal, Mikael; Padyukov, Leonid; Andriulli, Angelo; Colombo, Elisabetta; Latiano, Anna; Palmieri, Orazio; Bernard, Edmond-Jean; Deslandres, Colette; Hommes, Daan W; de Jong, Dirk J; Stokkers, Pieter C; Weersma, Rinse K; NIDDK IBD Genetics Consortium; Sharma, Yashoda; Silverberg, Mark S; Cho, Judy H; Wu, Jing; Roeder, Kathryn; Brant, Steven R; Schumm, L Phillip; Duerr, Richard H; Dubinsky, Marla C; Glazer, Nicole L; Haritunians, Talin; Ippoliti, Andy; Melmed, Gil Y; Siscovick, David S; Vasiliauskas, Eric A; Targan, Stephan R; Annese, Vito; Wijmenga, Cisca; Pettersson, Sven; Rotter, Jerome I; Xavier, Ramnik J; Daly, Mark J; Rioux, John D; Seielstad, Mark; (2010) Genome-wide association identifies multiple ulcerative colitis susceptibility loci. Nature genetics, 42 (4). pp. 332-337. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.549 Full text not available from this repository.

Ooi, Peng Lim; Lai, Florence Yuk Lin; Low, Chew Ling; Lin, Raymond; Wong, Christopher; Hibberd, Martin; Tambyah, Paul Ananth; (2010) Clinical and molecular evidence for transmission of novel influenza A(H1N1/2009) on a commercial airplane. Archives of internal medicine, 170 (10). pp. 913-915. ISSN 0003-9926 DOI: https://doi.org/10.1001/archinternmed.2010.127 Full text not available from this repository.

Shimizu, Chisato; Jain, Sonia; Davila, Sonia; Hibberd, Martin L; Lin, Kevin O; Molkara, Delaram; Frazer, Jeffrey R; Sun, Shelly; Baker, Annette L; Newburger, Jane W; +16 more... Rowley, Anne H; Shulman, Stanford T; Burgner, David; Breunis, Willemijn B; Kuijpers, Taco W; Wright, Victoria J; Levin, Michael; Eleftherohorinou, Hariklia; Coin, Lachlan; Popper, Stephen J; Relman, David A; Fury, Wen; Lin, Calvin; Mellis, Scott; Tremoulet, Adriana H; Burns, Jane C; (2010) Transforming growth factor-beta signaling pathway in patients with Kawasaki disease. Circulation Cardiovascular genetics, 4 (1). pp. 16-25. ISSN 1942-325X DOI: https://doi.org/10.1161/CIRCGENETICS.110.940858 Full text not available from this repository.

Shimizu, Chisato; Matsubara, Tomoyo; Onouchi, Yoshihiro; Jain, Sonia; Sun, Shelly; Nievergelt, Caroline M; Shike, Hiroko; Brophy, Victoria H; Takegawa, Tsuyoshi; Furukawa, Susumu; +11 more... Akagi, Teiji; Newburger, Jane W; Baker, Annette L; Burgner, David; Hibberd, Martin L; Davila, Sonia; Levin, Michael; Mamtani, Manju; He, Weijing; Ahuja, Sunil K; Burns, Jane C; (2010) Matrix metalloproteinase haplotypes associated with coronary artery aneurysm formation in patients with Kawasaki disease. Journal of human genetics, 55 (12). pp. 779-784. ISSN 1434-5161 DOI: https://doi.org/10.1038/jhg.2010.109

Vithana, Eranga N; Aung, Tin; Khor, Chiea Chuen; Cornes, Belinda K; Tay, Wan-Ting; Sim, Xueling; Lavanya, Raghavan; Wu, Renyi; Zheng, Yingfeng; Hibberd, Martin L; +6 more... Chia, Kee Seng; Seielstad, Mark; Goh, Liang Kee; Saw, Seang-Mei; Tai, E Shyong; Wong, Tien Y; (2010) Collagen-related genes influence the glaucoma risk factor, central corneal thickness. Human molecular genetics, 20 (4). pp. 649-658. ISSN 0964-6906 DOI: https://doi.org/10.1093/hmg/ddq511 Full text not available from this repository.

Björkholm, Britta; Bok, Chek Mei; Lundin, Annelie; Rafter, Joseph; Hibberd, Martin Lloyd; Pettersson, Sven; (2009) Intestinal microbiota regulate xenobiotic metabolism in the liver. PloS one, 4 (9). e6958-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0006958

Burgner, David; Davila, Sonia; Breunis, Willemijn B; Ng, Sarah B; Li, Yi; Bonnard, Carine; Ling, Ling; Wright, Victoria J; Thalamuthu, Anbupalam; Odam, Miranda; +6 more... Shimizu, Chisato; Burns, Jane C; Levin, Michael; Kuijpers, Taco W; Hibberd, Martin L; International Kawasaki Disease Genetics Consortium; (2009) A genome-wide association study identifies novel and functionally related susceptibility Loci for Kawasaki disease. PLoS genetics, 5 (1). e1000319-. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1000319

Davila, Sonia; Hibberd, Martin L; (2009) Genome-wide association studies are coming for human infectious diseases. Genome medicine, 1 (2). 19-. ISSN 1756-994X DOI: https://doi.org/10.1186/gm19

Long, Hoang Truong; Hibberd, Martin L; Hien, Tran Tinh; Dung, Nguyen Minh; Van Ngoc, Tran; Farrar, Jeremy; Wills, Bridget; Simmons, Cameron P; (2009) Patterns of gene transcript abundance in the blood of children with severe or uncomplicated dengue highlight differences in disease evolution and host response to dengue virus infection. The Journal of infectious diseases, 199 (4). pp. 537-546. ISSN 0022-1899 DOI: https://doi.org/10.1086/596507 Full text not available from this repository.

Schreiber, Mark J; Holmes, Edward C; Ong, Swee Hoe; Soh, Harold SH; Liu, Wei; Tanner, Lukas; Aw, Pauline PK; Tan, Hwee Cheng; Ng, Lee Ching; Leo, Yee Sin; +5 more... Low, Jenny GH; Ong, Adrian; Ooi, Eng Eong; Vasudevan, Subhash G; Hibberd, Martin L; (2009) Genomic epidemiology of a dengue virus epidemic in urban Singapore. Journal of virology, 83 (9). pp. 4163-4173. ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.02445-08 Full text not available from this repository.

Wright, Victoria; Hibberd, Martin; Levin, Michael; (2009) Genetic polymorphisms in host response to meningococcal infection: the role of susceptibility and severity genes. Vaccine, 27 Sup. B90-102. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2009.05.002 Full text not available from this repository.

Yang, Ninghan; Hibberd, Martin L; (2009) Genetics and Genomics of Infectious Diseases: advancing our understanding of host/pathogens and their interactions. Genome medicine, 1 (5). 52-. ISSN 1756-994X DOI: https://doi.org/10.1186/gm52

Zhang, Fu-Ren; Huang, Wei; Chen, Shu-Min; Sun, Liang-Dan; Liu, Hong; Li, Yi; Cui, Yong; Yan, Xiao-Xiao; Yang, Hai-Tao; Yang, Rong-De; +57 more... Chu, Tong-Sheng; Zhang, Chi; Zhang, Lin; Han, Jian-Wen; Yu, Gong-Qi; Quan, Cheng; Yu, Yong-Xiang; Zhang, Zheng; Shi, Ben-Qing; Zhang, Lian-Hua; Cheng, Hui; Wang, Chang-Yuan; Lin, Yan; Zheng, Hou-Feng; Fu, Xi-An; Zuo, Xian-Bo; Wang, Qiang; Long, Heng; Sun, Yi-Ping; Cheng, Yi-Lin; Tian, Hong-Qing; Zhou, Fu-Sheng; Liu, Hua-Xu; Lu, Wen-Sheng; He, Su-Min; Du, Wen-Li; Shen, Min; Jin, Qi-Yi; Wang, Ying; Low, Hui-Qi; Erwin, Tantoso; Yang, Ning-Han; Li, Jin-Yong; Zhao, Xin; Jiao, Yue-Lin; Mao, Li-Guo; Yin, Gang; Jiang, Zhen-Xia; Wang, Xiao-Dong; Yu, Jing-Ping; Hu, Zong-Hou; Gong, Cui-Hua; Liu, Yu-Qiang; Liu, Rui-Yu; Wang, De-Min; Wei, Dong; Liu, Jin-Xian; Cao, Wei-Kun; Cao, Hong-Zhong; Li, Yong-Ping; Yan, Wei-Guo; Wei, Shi-Yu; Wang, Kui-Jun; Hibberd, Martin L; Yang, Sen; Zhang, Xue-Jun; Liu, Jian-Jun; (2009) Genomewide association study of leprosy. The New England journal of medicine, 361 (27). pp. 2609-2618. ISSN 0028-4793 DOI: https://doi.org/10.1056/NEJMoa0903753

Davila, Sonia; Hibberd, Martin L; Hari Dass, Ranjeeta; Wong, Hazel EE; Sahiratmadja, Edhyana; Bonnard, Carine; Alisjahbana, Bachti; Szeszko, Jeffrey S; Balabanova, Yanina; Drobniewski, Francis; +5 more... van Crevel, Reinout; van de Vosse, Esther; Nejentsev, Sergey; Ottenhoff, Tom HM; Seielstad, Mark; (2008) Genetic association and expression studies indicate a role of toll-like receptor 8 in pulmonary tuberculosis. PLoS genetics, 4 (10). e1000218-. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1000218

Hartman, Amy L; Ling, Ling; Nichol, Stuart T; Hibberd, Martin L; (2008) Whole-genome expression profiling reveals that inhibition of host innate immune response pathways by Ebola virus can be reversed by a single amino acid change in the VP35 protein. Journal of virology, 82 (11). pp. 5348-5358. ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.00215-08 Full text not available from this repository.

Nejentsev, Sergey; Thye, Thorsten; Szeszko, Jeffrey S; Stevens, Helen; Balabanova, Yanina; Chinbuah, Amanua M; Hibberd, Martin; van de Vosse, Esther; Alisjahbana, Bachti; van Crevel, Reinout; +6 more... Ottenhoff, Tom HM; Png, Eileen; Drobniewski, Francis; Todd, John A; Seielstad, Mark; Horstmann, Rolf D; (2008) Analysis of association of the TIRAP (MAL) S180L variant and tuberculosis in three populations. Nature genetics, 40 (3). pp. 261-262. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng0308-261 Full text not available from this repository.

Tanner, Lukas; Schreiber, Mark; Low, Jenny GH; Ong, Adrian; Tolfvenstam, Thomas; Lai, Yee Ling; Ng, Lee Ching; Leo, Yee Sin; Thi Puong, Le; Vasudevan, Subhash G; +3 more... Simmons, Cameron P; Hibberd, Martin L; Ooi, Eng Eong; (2008) Decision tree algorithms predict the diagnosis and outcome of dengue fever in the early phase of illness. PLoS neglected tropical diseases, 2 (3). e196-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0000196

Thuong, Nguyen Thuy Thuong; Dunstan, Sarah J; Chau, Tran Thi Hong; Thorsson, Vesteinn; Simmons, Cameron P; Quyen, Nguyen Than Ha; Thwaites, Guy E; Thi Ngoc Lan, Nguyen; Hibberd, Martin; Teo, Yik Y; +4 more... Seielstad, Mark; Aderem, Alan; Farrar, Jeremy J; Hawn, Thomas R; (2008) Identification of tuberculosis susceptibility genes with human macrophage gene expression profiles. PLoS pathogens, 4 (12). e1000229-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1000229

Umareddy, Indira; Tang, Kin Fai; Vasudevan, Subhash G; Devi, Shamala; Hibberd, Martin L; Gu, Feng; (2008) Dengue virus regulates type I interferon signalling in a strain-dependent manner in human cell lines. The Journal of general virology, 89 (Pt 12). pp. 3052-3062. ISSN 0022-1317 DOI: https://doi.org/10.1099/vir.0.2008/001594-0 Full text not available from this repository.

Fink, Joshua; Gu, Feng; Ling, Ling; Tolfvenstam, Thomas; Olfat, Farzad; Chin, Keh Chuang; Aw, Pauline; George, Joshy; Kuznetsov, Vladimir A; Schreiber, Mark; +2 more... Vasudevan, Subhash G; Hibberd, Martin L; (2007) Host gene expression profiling of dengue virus infection in cell lines and patients. PLoS neglected tropical diseases, 1 (2). e86-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0000086

Lim, Ching-Aeng; Yao, Fei; Wong, Joyce Jing-Yi; George, Joshy; Xu, Han; Chiu, Kuo Ping; Sung, Wing-Kin; Lipovich, Leonard; Vega, Vinsensius B; Chen, Joanne; +8 more... Shahab, Atif; Zhao, Xiao Dong; Hibberd, Martin; Wei, Chia-Lin; Lim, Bing; Ng, Huck-Hui; Ruan, Yijun; Chin, Keh-Chuang; (2007) Genome-wide mapping of RELA(p65) binding identifies E2F1 as a transcriptional activator recruited by NF-kappaB upon TLR4 activation. Molecular cell, 27 (4). pp. 622-635. ISSN 1097-2765 DOI: https://doi.org/10.1016/j.molcel.2007.06.038 Full text not available from this repository.

Lundin, Annelie; Bok, Chek Mei; Aronsson, Linda; Björkholm, Britta; Gustafsson, Jan-Ake; Pott, Sebastian; Arulampalam, Velmurugesan; Hibberd, Martin; Rafter, Joseph; Pettersson, Sven; (2007) Gut flora, Toll-like receptors and nuclear receptors: a tripartite communication that tunes innate immunity in large intestine. Cellular microbiology, 10 (5). pp. 1093-1103. ISSN 1462-5814 DOI: https://doi.org/10.1111/j.1462-5822.2007.01108.x Full text not available from this repository.

Wong, Christopher W; Heng, Charlie Lee Wah; Wan Yee, Leong; Soh, Shirlena WL; Kartasasmita, Cissy B; Simoes, Eric AF; Hibberd, Martin L; Sung, Wing-Kin; Miller, Lance D; (2007) Optimization and clinical validation of a pathogen detection microarray. Genome Biol, 8 (5). R93-. ISSN 1474-760X DOI: https://doi.org/10.1186/gb-2007-8-5-r93

Haralambous, Elene; Dolly, Saoirse O; Hibberd, Martin L; Litt, David J; Udalova, Irina A; O'dwyer, Cliona; Langford, Paul R; Simon Kroll, J; Levin, Michael; (2006) Factor H, a regulator of complement activity, is a major determinant of meningococcal disease susceptibility in UK Caucasian patients. Scandinavian journal of infectious diseases, 38 (9). pp. 764-771. ISSN 0036-5548 DOI: https://doi.org/10.1080/00365540600643203 Full text not available from this repository.

Hibberd, Martin L; Ling, Ling; Tolfvenstam, Thomas; Mitchell, Wayne; Wong, Chris; Kuznetsov, Vladimir A; George, Joshy; Ong, Swee-Hoe; Ruan, Yijun; Wei, Chia L; +6 more... Gu, Feng; Fink, Joshua; Yip, Andy; Liu, Wei; Schreiber, Mark; Vasudevan, Subhash G; (2006) A genomics approach to understanding host response during dengue infection. Novartis Foundation symposium, 277. pp. 206-214. ISSN 1528-2511 DOI: https://doi.org/10.1002/0470058005.ch15 Full text not available from this repository.

Low, Jenny GH; Ooi, Eng-Eong; Tolfvenstam, Thomas; Leo, Yee-Sin; Hibberd, Martin L; Ng, Lee-Ching; Lai, Yee-Ling; Yap, Grace SL; Li, Chenny SC; Vasudevan, Subhash G; +1 more... Ong, Adrian; (2006) Early Dengue infection and outcome study (EDEN) - study design and preliminary findings. Annals of the Academy of Medicine, Singapore, 35 (11). pp. 783-789. ISSN 0304-4602 DOI: https://doi.org/10.47102/annals-acadmedsg.v35n11p783 Full text not available from this repository.

Kampmann, Beate; Hemingway, Cheryl; Stephens, Alick; Davidson, Robert; Goodsall, Anna; Anderson, Suzanne; Nicol, Mark; Schölvinck, Elisabeth; Relman, David; Waddell, Simon; +8 more... Langford, Paul; Sheehan, Brian; Semple, Lynn; Wilkinson, Katalin A; Wilkinson, Robert J; Ress, Stanley; Hibberd, Martin; Levin, Michael; (2005) Acquired predisposition to mycobacterial disease due to autoantibodies to IFN-gamma. The Journal of clinical investigation, 115 (9). pp. 2480-2488. ISSN 0021-9738 DOI: https://doi.org/10.1172/JCI19316 Full text not available from this repository.

Liu, Jianjun; Lim, Siew Lan; Ruan, Yijun; Ling, Ai Ee; Ng, Lisa FP; Drosten, Christian; Liu, Edison T; Stanton, Lawrence W; Hibberd, Martin L; (2005) SARS transmission pattern in Singapore reassessed by viral sequence variation analysis. PLoS medicine, 2 (2). e43-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.0020043

Zhang, Tao; Breitbart, Mya; Lee, Wah Heng; Run, Jin-Quan; Wei, Chia Lin; Soh, Shirlena Wee Ling; Hibberd, Martin L; Liu, Edison T; Rohwer, Forest; Ruan, Yijun; (2005) RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS biology, 4 (1). e3-. ISSN 1544-9173 DOI: https://doi.org/10.1371/journal.pbio.0040003

Ng, Lisa FP; Hibberd, Martin L; Ooi, Eng-Eong; Tang, Kin-Fai; Neo, Soek-Ying; Tan, Jenny; Murthy, Karuturi R Krishna; Vega, Vinsensius B; Chia, Jer-Ming; Liu, Edison T; +1 more... Ren, Ee-Chee; (2004) A human in vitro model system for investigating genome-wide host responses to SARS coronavirus infection. BMC infectious diseases, 4 (1). 34-. ISSN 1471-2334 DOI: https://doi.org/10.1186/1471-2334-4-34

Ng, Lisa FP; Wong, Michelle; Koh, Susie; Ooi, Eng-Eong; Tang, King-Fai; Leong, Hoe-Nam; Ling, Ai-Ee; Agathe, Lora V; Tan, Jenny; Liu, Edison T; +3 more... Ren, Ee-Chee; Ng, Lee-Ching; Hibberd, Martin L; (2004) Detection of severe acute respiratory syndrome coronavirus in blood of infected patients. Journal of clinical microbiology, 42 (1). pp. 347-350. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.42.1.347-350.2004 Full text not available from this repository.

Haralambous, E; Weiss, HA; Radalowicz, A; Hibberd, ML; Booy, R; Levin, M; (2003) Sibling familial risk ratio of meningococcal disease in UK Caucasians. Epidemiology and infection, 130 (3). pp. 413-418. ISSN 0950-2688 DOI: https://doi.org/10.1017/s0950268803008513

Smirnova, Irina; Mann, Navjiwan; Dols, Annemiek; Derkx, HH; Hibberd, Martin L; Levin, Michael; Beutler, Bruce; (2003) Assay of locus-specific genetic load implicates rare Toll-like receptor 4 mutations in meningococcal susceptibility. Proceedings of the National Academy of Sciences of the United States of America, 100 (10). pp. 6075-6080. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1031605100 Full text not available from this repository.