Guest, Claire; Dewhirst, Sarah Y; Lindsay, Steve W; Allen, David J; Aziz, Sophie; Baerenbold, Oliver; Bradley, John; Chabildas, Unnati; Chen-Hussey, Vanessa; Clifford, Samuel; +20 more... Cottis, Luke; Dennehy, Jessica; Foley, Erin; Gezan, Salvador A; Gibson, Tim; Greaves, Courtenay K; Kleinschmidt, Immo; Lambert, Sébastien; Last, Anna; Morant, Steve; Parker, Josephine EA; Pickett, John; Quilty, Billy J; Rooney, Ann; Shah, Manil; Somerville, Mark; Squires, Chelci; Walker, Martin; Logan, James G; COVID Dogs Research Team; (2022) Using trained dogs and organic semi-conducting sensors to identify asymptomatic and mild SARS-CoV-2 infections: an observational study. Journal of travel medicine, 29 (3). taac043. ISSN 1195-1982 DOI: https://doi.org/10.1093/jtm/taac043

Qian, George; Toizumi, Michiko; Clifford, Sam; Le, Lien Thuy; Papastylianou, Tasos; Satzke, Catherine; Quilty, Billy; Iwasaki, Chihiro; Kitamura, Noriko; Takegata, Mizuki; +6 more... Bui, Minh Xuan; Nguyen, Hien Anh Thi; Dang, Duc Anh; van Hoek, Albert Jan; Yoshida, Lay Myint; Flasche, Stefan; (2022) Association of pneumococcal carriage in infants with the risk of carriage among their contacts in Nha Trang, Vietnam: A nested cross-sectional survey. PLoS medicine, 19 (5). e1004016-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1004016

Clifford, Samuel; Quilty, Billy J; Russell, Timothy W; Liu, Yang; Chan, Yung-Wai D; Pearson, Carl AB; Eggo, Rosalind M; Endo, Akira; CMMID COVID-19 Working Group; Flasche, Stefan; +2 more... Edmunds, W John; Centre for Mathematical Modelling of Infectious Diseases (CMMID); CMMID COVID-19 Working Group, Centre for Mathematical Modelling of Infectious Diseases (CMMID); (2021) Strategies to reduce the risk of SARS-CoV-2 importation from international travellers: modelling estimations for the United Kingdom, July 2020. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 26 (39). ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2021.26.39.2001440

Gonçalves, Bronner P; Procter, Simon R; Clifford, Sam; Koukounari, Artemis; Paul, Proma; Lewin, Alexandra; Jit, Mark; Lawn, Joy; (2021) Estimation of country-level incidence of early-onset invasive Group B Streptococcus disease in infants using Bayesian methods. PLoS computational biology, 17 (6). e1009001-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1009001

Pearson, Carl AB; Clifford, Sam; Pulliam, Juliet RC; Eggo, Rosalind M; (2021) Pre-vaccination testing could expand coverage of two-dose COVID vaccines. Wellcome Open Research, 6. p. 105. DOI: https://doi.org/10.12688/wellcomeopenres.16835.1

Quilty, Billy J; Clifford, Samuel; Hellewell, Joel; Russell, Timothy W; Kucharski, Adam J; Flasche, Stefan; Edmunds, W John; Centre for the Mathematical Modelling of Infectious Diseases COV; (2021) Quarantine and testing strategies in contact tracing for SARS-CoV-2: a modelling study. The Lancet Public Health, 6 (3). e175-e183. ISSN 2468-2667 DOI: https://doi.org/10.1016/S2468-2667(20)30308-X

Russell, Timothy W; Wu, Joseph T; Clifford, Sam; Edmunds, W John; Kucharski, Adam J; Jit, Mark; Centre for the Mathematical Modelling of Infectious Diseases COV; Centre for the Mathematical Modelling of Infectious Diseases COV; (2021) Effect of internationally imported cases on internal spread of COVID-19: a mathematical modelling study. LANCET PUBLIC HEALTH, 6 (1). e12-e20. ISSN 2468-2667 DOI: https://doi.org/10.1016/S2468-2667(20)30263-2

Clifford, Samuel; Pearson, Carl AB; Klepac, Petra; Van Zandvoort, Kevin; Quilty, Billy J; CMMID COVID-19 working group; Eggo, Rosalind M; Flasche, Stefan; (2020) Effectiveness of interventions targeting air travellers for delaying local outbreaks of SARS-CoV-2. JOURNAL OF TRAVEL MEDICINE, 27 (5). taaa068-. ISSN 1195-1982 DOI: https://doi.org/10.1093/jtm/taaa068

Jombart, Thibaut; van Zandvoort, Kevin; Russell, Timothy W; Jarvis, Christopher I; Gimma, Amy; Abbott, Sam; Clifford, Sam; Funk, Sebastian; Gibbs, Hamish; Liu, Yang; +6 more... Pearson, Carl AB; Bosse, Nikos I; Centre for the Mathematical Modelling of Infectious Diseases COV; Eggo, Rosalind M; Kucharski, Adam J; Edmunds, W John; Centre for the Mathematical Modelling of Infectious Diseases COV; (2020) Inferring the number of COVID-19 cases from recently reported deaths. Wellcome Open Res, 5. 78-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.15786.1

Jombart, Thibaut; van Zandvoort, Kevin; Russell, Timothy W; Jarvis, Christopher I; Gimma, Amy; Abbott, Sam; Clifford, Sam; Funk, Sebastian; Gibbs, Hamish; Liu, Yang; +6 more... Pearson, Carl AB; Bosse, Nikos I; Centre for the Mathematical Modelling of Infectious Diseases COV; Eggo, Rosalind M; Kucharski, Adam J; Edmunds, W John; (2020) Inferring the number of COVID-19 cases from recently reported deaths. medRxiv. DOI: https://doi.org/10.1101/2020.03.10.20033761

Jombart, Thibaut; van Zandvoort, Kevin; Russell, Timothy W; Jarvis, Christopher I; Gimma, Amy; Abbott, Sam; Clifford, Sam; Funk, Sebastian; Gibbs, Hamish; Liu, Yang; +6 more... Pearson, Carl AB; Bosse, Nikos I; Centre for the Mathematical Modelling of Infectious Diseases COV; Eggo, Rosalind M; Kucharski, Adam J; Edmunds, W John; (2020) Inferring the number of COVID-19 cases from recently reported deaths. Wellcome open research, 5. 78-. DOI: https://doi.org/10.12688/wellcomeopenres.15786.1

Liu, Yang; Gong, Wenfeng; Clifford, Samuel; Sundaram, Maria E; Jit, Mark; Flasche, Stefan; Klepac, Petra; (2020) Designing a multi-layered surveillance approach to detecting SARS-CoV-2: A modelling study. Wellcome Open Research, 5. p. 218. DOI: https://doi.org/10.12688/wellcomeopenres.16256.1

Quilty, Billy J; Clifford, Sam; CMMID nCoV working group2; Flasche, Stefan; Eggo, Rosalind M; (2020) Effectiveness of airport screening at detecting travellers infected with novel coronavirus (2019-nCoV). Eurosurveillance, 25 (5). pp. 4-9. ISSN 1560-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.5.2000080

Quilty, Billy J; Diamond, Charlie; Liu, Yang; Gibbs, Hamish; Russell, Timothy W; Jarvis, Christopher I; Prem, Kiesha; Pearson, Carl AB; Clifford, Samuel; Flasche, Stefan; +4 more... CMMID COVID-19 working group; Klepac, Petra; Eggo, Rosalind M; Jit, Mark; (2020) The effect of travel restrictions on the geographical spread of COVID-19 between large cities in China: a modelling study. BMC medicine, 18 (1). 259-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01712-9

Rees, Eleanor M; Nightingale, Emily S; Jafari, Yalda; Waterlow, Naomi R; Clifford, Samuel; B Pearson, Carl A; Group, Cmmid Working; Jombart, Thibaut; Procter, Simon R; Knight, Gwenan M; (2020) COVID-19 length of hospital stay: a systematic review and data synthesis. BMC MEDICINE, 18 (1). 270-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01726-3

Rees, Eleanor M; Nightingale, Emily S; Jafari, Yalda; Waterlow, Naomi; Clifford, Samuel; Pearson, Carl AB; Jombert, Thibaut; Procter, Simon R; Knight, Gwenan M; (2020) COVID-19 length of hospital stay: a systematic review and data synthesis. BMC medicine, 18 (270). ISSN 1741-7015 DOI: https://doi.org/10.1101/2020.04.30.20084780

Clifford, Sam; Low‐Choy, Samantha; Mazaheri, Mandana; Salimi, Farhad; Morawska, Lidia; Mengersen, Kerrie; (2019) A Bayesian spatiotemporal model of panel design data: Airborne particle number concentration in Brisbane, Australia. Environmetrics, 30 (7). ISSN 1180-4009 DOI: https://doi.org/10.1002/env.2597

Jendrossek, Mario; Edmunds, W John; Rohan, Hana; Clifford, Samuel; Mooney, Thomas A; Eggo, Rosalind M; (2019) Health care worker vaccination against Ebola: Vaccine acceptance and employment duration in Sierra Leone. Vaccine, 37 (8). pp. 1101-1108. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.12.060

Leigh, Catherine; Heron, Grace; Wilson, Ella; Gregory, Taylor; Clifford, Samuel; Holloway, Jacinta; McBain, Miles; Gonzalez, Felipé; McGree, James; Brown, Ross; +2 more... Mengersen, Kerrie; Peterson, Erin E; (2019) Using virtual reality and thermal imagery to improve statistical modelling of vulnerable and protected species. PloS one, 14 (12). e0217809-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0217809

Mapder, Tarunendu; Clifford, Sam; Aaskov, John; Burrage, Kevin; (2019) A population of bang-bang switches of defective interfering particles makes within-host dynamics of dengue virus controllable. PLoS computational biology, 15 (11). e1006668-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1006668

Mazaheri, Mandana; Lin, Weiwei; Clifford, Samuel; Yue, Dingli; Zhai, Yuhong; Xu, Muwu; Rizza, Valeria; Morawska, Lidia; (2019) Characteristics of school children's personal exposure to ultrafine particles in Heshan, Pearl River Delta, China - A pilot study. Environment international, 132. 105134-. ISSN 0160-4120 DOI: https://doi.org/10.1016/j.envint.2019.105134

Pearson, Carl AB; Abbas, Kaja M; Clifford, Samuel; Flasche, Stefan; Hladish, Thomas J; (2019) Serostatus testing and dengue vaccine cost-benefit thresholds. Journal of The Royal Society Interface, 16 (157). 20190234-. ISSN 1742-5689 DOI: https://doi.org/10.1098/rsif.2019.0234

Tierney, Nicholas J; Mira, Antonietta; Reinhold, H Jost; Arbia, Giuseppe; Clifford, Samuel; Auricchio, Angelo; Moccetti, Tiziano; Peluso, Stefano; Mengersen, Kerrie L; (2019) Evaluating health facility access using Bayesian spatial models and location analysis methods. PloS one, 14 (8). e0218310-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0218310

Colin, Brigitte; Schmidt, Michael; Clifford, Samuel; Woodley, Alan; Mengersen, Kerrie; (2018) Influence of Spatial Aggregation on Prediction Accuracy of Green Vegetation Using Boosted Regression Trees. Remote Sensing, 10 (8). p. 1260. DOI: https://doi.org/10.3390/rs10081260

Vercelloni, Julie; Clifford, Sam; Caley, M Julian; Pearse, Alan R; Brown, Ross; James, Allan; Christensen, Bryce; Bednarz, Tomasz; Anthony, Ken; González-Rivero, Manuel; +2 more... Mengersen, Kerrie; Peterson, Erin E; (2018) Using virtual reality to estimate aesthetic values of coral reefs. Royal Society Open Science, 5 (4). p. 172226. ISSN 2054-5703 DOI: https://doi.org/10.1098/rsos.172226

Colin, Brigitte; Clifford, Samuel; Wu, Paul; Rathmanner, Samuel; Mengersen, Kerrie; (2017) Using Boosted Regression Trees and Remotely Sensed Data to Drive Decision-Making. Open Journal of Statistics, 07 (05). pp. 859-875. ISSN 2161-718X DOI: https://doi.org/10.4236/ojs.2017.75061