Items where Author is "Thomson, NR"

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Number of items: 51.

2017

Baker, KS; Campos, J; Pichel, M; Della Gaspera, A; Duarte-Martínez, F; Campos-Chacón, E; Bolaños-Acuña, HM; Guzmán-Verri, C; Mather, AE; Diaz Velasco, S; +19 more... (2017) Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses. Clinical microbiology and infection . ISSN 1198-743X DOI: 10.1016/j.cmi.2017.03.021 Full text not available from this repository.

Esson, D; Gupta, S; Bailey, D; Wigley, P; Wedley, A; Mather, AE; Méric, G; Mastroeni, P; Sheppard, SK; Thomson, NR; +4 more... (2017) Identification and initial characterisation of a protein involved in Campylobacter jejuni cell shape. Microbial pathogenesis. ISSN 0882-4010 DOI: 10.1016/j.micpath.2017.01.042
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Hadfield, J; Harris, SR; Seth-Smith, HMB; Parmar, S; Andersson, P; Giffard, PM; Schachter, J; Moncada, J; Ellison, L; Vaulet, MLG; +28 more... (2017) Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome research. ISSN 1088-9051 DOI: 10.1101/gr.212647.116 Full text not available from this repository.

Musicha, P; Feasey, NA; Cain, AK; Kallonen, T; Chaguza, C; Peno, C; Khonga, M; Thompson, S; Gray, KJ; Mather, AE; +4 more... (2017) Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting. The Journal of antimicrobial chemotherapy. ISSN 0305-7453 DOI: 10.1093/jac/dkx058 Full text not available from this repository.

Ramírez-Vargas, G; Quesada-Gómez, C; Acuña-Amador, L; López-Ureña, D; Murillo, T; Del Mar Gamboa-Coronado, M; Chaves-Olarte, E; Thomson, N; Rodríguez-Cavallini, E; Rodríguez, C; (2017) A Clostridium difficile lineage endemic to Costa Rican hospitals is multidrug-resistant by acquisition of chromosomal mutations and novel mobile genetic elements. Antimicrobial agents and chemotherapy, 61 (4). ISSN 0066-4804 DOI: 10.1128/AAC.02054-16 Full text not available from this repository.

Seth-Smith, HM; Galán, JC; Goldenberger, D; Lewis, DA; Peuchant, O; Bébéar, C; de Barbeyrac, B; Bénard, A; Carter, I; Kok, J; +6 more... (2017) Concern regarding the alleged spread of hypervirulent lymphogranuloma venereum Chlamydia trachomatis strain in Europe. Euro surveillance , 22 (15). ISSN 1025-496X DOI: 10.2807/1560-7917.ES.2017.22.15.30511 Full text not available from this repository.

2016

Andersson, P; Harris, SR; Smith, HM; Hadfield, J; O'Neill, C; Cutcliffe, LT; Douglas, FP; Asche, LV; Mathews, JD; Hutton, SI; +5 more... (2016) Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages. Nat Commun, 7. p. 10688. ISSN 2041-1723 DOI: 10.1038/ncomms10688
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Chung The, H; Rabaa, MA; Pham Thanh, D; De Lappe, N; Cormican, M; Valcanis, M; Howden, BP; Wangchuk, S; Bodhidatta, L; Mason, CJ; +12 more... (2016) South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study. PLoS medicine, 13 (8). e1002055. ISSN 1549-1277 DOI: 10.1371/journal.pmed.1002055
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Connor, TR; Owen, SV; Langridge, G; Connell, S; Nair, S; Reuter, S; Dallman, TJ; Corander, J; Tabing, KC; Le Hello, S; +15 more... (2016) What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B. MBio, 7 (4). ISSN 2150-7511 DOI: 10.1128/mBio.00527-16 Full text not available from this repository.

Esson, D; Mather, AE; Scanlan, E; Gupta, S; de Vries, SP; Bailey, D; Harris, SR; McKinley, TJ; Méric, G; Berry, SK; +7 more... (2016) Genomic variations leading to alterations in cell morphology of Campylobacter spp. Sci Rep, 6. p. 38303. ISSN 2045-2322 DOI: 10.1038/srep38303 Full text not available from this repository.

Feasey, NA; Hadfield, J; Keddy, KH; Dallman, TJ; Jacobs, J; Deng, X; Wigley, P; Barquist Barquist, L; Langridge, GC; Feltwell, T; +37 more... (2016) Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings. Nature genetics. ISSN 1061-4036 DOI: 10.1038/ng.3644 Full text not available from this repository.

Follador, R; Heinz, E; Wyres, KL; Ellington, MJ; Kowarik, M; Holt, KE; Thomson, NR; (2016) The diversity of Klebsiella pneumoniae surface polysaccharides. Microb Genom, 2 (8). e000073. ISSN 2057-5858 DOI: 10.1099/mgen.0.000073 Full text not available from this repository.

Karlsson, SL; Thomson, N; Mutreja, A; Connor, T; Sur, D; Ali, M; Clemens, J; Dougan, G; Holmgren, J; Lebens, M; (2016) Retrospective Analysis of Serotype Switching of Vibrio cholerae O1 in a Cholera Endemic Region Shows It Is a Non-random Process. PLoS neglected tropical diseases, 10 (10). e0005044. ISSN 1935-2727 DOI: 10.1371/journal.pntd.0005044
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Njamkepo, E; Fawal, N; Tran-Dien, A; Hawkey, J; Strockbine, N; Jenkins, C; Talukder, KA; Bercion, R; Kuleshov, K; Kolínská, R; +62 more... (2016) Global phylogeography and evolutionary history of Shigella dysenteriae type 1. Nat Microbiol, 1. p. 16027. ISSN 2058-5276 DOI: 10.1038/nmicrobiol.2016.27 Full text not available from this repository.

Pollard, DJ; Young, JC; Covarelli, V; Herrera-León, S; Connor, TR; Fookes, M; Walker, D; Echeita, A; Thomson, NR; Berger, CN; +1 more... (2016) The type III secretion system effector SeoC of Salmonella enterica subspecies salamae and arizonae ADP-ribosylates Src and inhibits opsono-phagocytosis. Infection and immunity. ISSN 0019-9567 DOI: 10.1128/IAI.00704-16
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Suarez-Esquivel, M; Ruiz-Villalobos, N; Castillo-Zeledon, A; Jimenez-Rojas, C; Roop, RM; Comerci, DJ; Barquero-Calvo, E; Chacon-Diaz, C; Caswell, CC; Baker, KS; +6 more... (2016) Brucella abortus Strain 2308 Wisconsin Genome: Importance of the Definition of Reference Strains. Frontiers in Microbiology, 7. p. 1557. ISSN 1664-302X DOI: 10.3389/fmicb.2016.01557 Full text not available from this repository.

The, HC; Thanh, DP; Holt, KE; Thomson, NR; Baker, S; (2016) The genomic signatures of Shigella evolution, adaptation and geographical spread. Nature reviews Microbiology, 14 (4). pp. 235-50. ISSN 1740-1526 DOI: 10.1038/nrmicro.2016.10 Full text not available from this repository.

Wyres, KL; Wick, RR; Gorrie, C; Jenney, A; Follador, R; Thomson, NR; Holt, KE; (2016) Identification of Klebsiella capsule synthesis loci from whole genome data. Microb Genom, 2 (12). e000102. ISSN 2057-5858 DOI: 10.1099/mgen.0.000102 Full text not available from this repository.

2015

Baker, KS; Burnett, E; McGregor, H; Deheer-Graham, A; Boinett, C; Langridge, GC; Wailan, AM; Cain, AK; Thomson, NR; Russell, JE; +1 more... (2015) The Murray collection of pre-antibiotic era Enterobacteriacae: a unique research resource. Genome Med, 7 (1). p. 97. ISSN 1756-994X DOI: 10.1186/s13073-015-0222-7
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Baker, KS; Dallman, TJ; Ashton, PM; Day, M; Hughes, G; Crook, PD; Gilbart, VL; Zittermann, S; Allen, VG; Howden, BP; +19 more... (2015) Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study. The Lancet infectious diseases, 15 (8). pp. 913-21. ISSN 1473-3099 DOI: 10.1016/S1473-3099(15)00002-X Full text not available from this repository.

Chowdhury, F; Mather, AE; Begum, YA; Asaduzzaman, M; Baby, N; Sharmin, S; Biswas, R; Ikhtear Uddin, M; LaRocque, RC; Harris, JB; +5 more... (2015) Vibrio cholerae Serogroup O139: Isolation from Cholera Patients and Asymptomatic Household Family Members in Bangladesh between 2013 and 2014. PLoS neglected tropical diseases, 9 (11). e0004183. ISSN 1935-2727 DOI: 10.1371/journal.pntd.0004183
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Chung The, H; Karkey, A; Pham Thanh, D; Boinett, CJ; Cain, AK; Ellington, M; Baker, KS; Dongol, S; Thompson, C; Harris, SR; +11 more... (2015) A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae. EMBO molecular medicine, 7 (3). pp. 227-39. ISSN 1757-4676 DOI: 10.15252/emmm.201404767
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Chung The, H; Rabaa, MA; Thanh, DP; Ruekit, S; Wangchuk, S; Dorji, T; Tshering, KP; Nguyen, TN; Vinh, PV; Thanh, TH; +9 more... (2015) Introduction and establishment of fluoroquinolone-resistant Shigella sonnei into Bhutan. Microb Genom, 1 (6). e000042. ISSN 2057-5858 DOI: 10.1099/mgen.0.000042 Full text not available from this repository.

Connor, TR; Barker, CR; Baker, KS; Weill, F.-, X; Talukder, KA; Smith, AM; Stephen, B; Gouali, M; Duy Pham, T; Azmi, IJ; +10 more... (2015) Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri. Elife, 4. e07335. ISSN 2050-084X DOI: 10.7554/eLife.07335
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Holt, KE; Wertheim, H; Zadoks, RN; Baker, S; Whitehouse, CA; Dance, D; Jenney, A; Connor, TR; Hsu, LY; Severin, J; +18 more... (2015) Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health. Proceedings of the National Academy of Sciences of the United States of America, 112 (27). E3574-81. ISSN 0027-8424 DOI: 10.1073/pnas.1501049112 Full text not available from this repository.

Le, V; Nhu, NT; Cerdeno-Tarraga, A; Campbell, JI; Tuyen, HT; Nhu, TdoH; Tam, PT; Schultsz, C; Thwaites, G; Thomson, NR; +1 more... (2015) Genetic characterization of three qnrS1-harbouring multidrug-resistance plasmids and qnrS1-containing transposons circulating in Ho Chi Minh City, Vietnam. Journal of medical microbiology, 64 (8). pp. 869-78. ISSN 0022-2615 DOI: 10.1099/jmm.0.000100
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Miwanda, B; Moore, S; Muyembe, J.-, J; Nguefack-Tsague, G; Kabangwa, IK; Ndjakani, DY; Mutreja, A; Thomson, N; Thefenne, H; Garnotel, E; +4 more... (2015) Antimicrobial Drug Resistance of Vibrio cholerae, Democratic Republic of the Congo. Emerging infectious diseases, 21 (5). pp. 847-851. ISSN 1080-6040 DOI: 10.3201/eid2105.141233
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Moore, S; Miwanda, B; Sadji, AY; Thefenne, H; Jeddi, F; Rebaudet, S; de Boeck, H; Bidjada, B; Depina, JJ; Bompangue, D; +9 more... (2015) Relationship between Distinct African Cholera Epidemics Revealed via MLVA Haplotyping of 337 Vibrio cholerae Isolates. PLoS neglected tropical diseases, 9 (6). e0003817. ISSN 1935-2727 DOI: 10.1371/journal.pntd.0003817
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Reuter, S; Corander, J; de Been, M; Harris, S; Cheng, L; Hall, M; Thomson, NR; McNally, A; (2015) Directional gene flow and ecological separation in Yersinia enterocolitica. Microb Genom, 1 (3). e000030. ISSN 2057-5858 DOI: 10.1099/mgen.0.000030 Full text not available from this repository.

Vehkala, M; Shubin, M; Connor, TR; Thomson, NR; Corander, J; (2015) Novel R pipeline for analyzing biolog phenotypic microarray data. PLoS One, 10 (3). e0118392. ISSN 1932-6203 DOI: 10.1371/journal.pone.0118392
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Wong, VK; Baker, S; Pickard, DJ; Parkhill, J; Page, AJ; Feasey, NA; Kingsley, RA; Thomson, NR; Keane, JA; Weill, FX; +64 more... (2015) Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. Nature genetics, 47 (6). pp. 632-9. ISSN 1061-4036 DOI: 10.1038/ng.3281 Full text not available from this repository.

2014

Baker, KS; Mather, AE; McGregor, H; Coupland, P; Langridge, GC; Day, M; Deheer-Graham, A; Parkhill, J; Russell, JE; Thomson, NR; (2014) The extant World War 1 dysentery bacillus NCTC1: a genomic analysis. Lancet, 384 (9955). pp. 1691-7. ISSN 0140-6736 DOI: 10.1016/S0140-6736(14)61789-X
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Iguchi, A; Iyoda, S; Kikuchi, T; Ogura, Y; Katsura, K; Ohnishi, M; Hayashi, T; Thomson, NR; (2014) A complete view of the genetic diversity of the Escherichia coli O-antigen biosynthesis gene cluster. DNA research . ISSN 1340-2838 DOI: 10.1093/dnares/dsu043
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Iguchi, A; Nagaya, Y; Pradel, E; Ooka, T; Ogura, Y; Katsura, K; Kurokawa, K; Oshima, K; Hattori, M; Parkhill, J; +6 more... (2014) Genome evolution and plasticity of Serratia marcescens, an important multidrug resistant nosocomial pathogen. Genome Biol Evol. ISSN 1759-6653 DOI: 10.1093/gbe/evu160
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Mather, AE; Baker, KS; McGregor, H; Coupland, P; Mather, PL; Deheer-Graham, A; Parkhill, J; Bracegirdle, P; Russell, JE; Thomson, NR; (2014) Bacillary dysentery from World War 1 and NCTC1, the first bacterial isolate in the National Collection. Lancet, 384 (9955). p. 1720. ISSN 0140-6736 DOI: 10.1016/S0140-6736(14)61790-6 Full text not available from this repository.

Reuter, S; Connor, TR; Barquist, L; Walker, D; Feltwell, T; Harris, SR; Fookes, M; Hall, ME; Petty, NK; Fuchs, TM; +23 more... (2014) Parallel independent evolution of pathogenicity within the genus Yersinia. Proceedings of the National Academy of Sciences of the United States of America, 111 (18). pp. 6768-73. ISSN 0027-8424 DOI: 10.1073/pnas.1317161111 Full text not available from this repository.

2013

Davies, MR; Broadbent, SE; Harris, SR; Thomson, NR; van der Woude, MW; (2013) Horizontally acquired glycosyltransferase operons drive salmonellae lipopolysaccharide diversity. PLoS genetics, 9 (6). e1003568. ISSN 1553-7390 DOI: 10.1371/journal.pgen.1003568
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Holt, KathrynE; Tran Vu Thieu, Nga; Duy Pham, Thanh; Ha, Vinh; Kim, DongWook; My Phan Vu, Tra; Campbell, JamesI; Nguyen van Minh, Hoang; Nguyen Thanh, Vinh; Pham Van, Minh; +20 more... (2013) Tracking the establishment of local endemic populations of an emergent enteric pathogen. Proceedings of the National Academy of Sciences of the United States of America, 110 (43). pp. 17522-17527. ISSN 0027-8424 DOI: 10.1073/pnas.1308632110 Full text not available from this repository.

Hopkinson, N; Wallis, C; Higgins, B; Gaduzo, S; Sherrington, R; Keilty, S; Stern, M; Britton, J; Bush, A; Moxham, J; +438 more... (2013) Children must be protected from the tobacco industry's marketing tactics. BMJ (Clinical research ed), 347. f7358. ISSN 0959-8138 DOI: 10.1136/bmj.f7358
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Mather, AE; Reid, SW; Maskell, DJ; Parkhill, J; Fookes, MC; Harris, SR; Brown, DJ; Coia, JE; Mulvey, MR; Gilmour, MW; +11 more... (2013) Distinguishable Epidemics of Multidrug-Resistant Salmonella Typhimurium DT104 in Different Hosts. Science (New York, NY), 341 (6153). pp. 1514-7. ISSN 0036-8075 DOI: 10.1126/science.1240578 Full text not available from this repository.

Seth-Smith, HM; Harris, SR; Skilton, RJ; Radebe, FM; Golparian, D; Shipitsyna, E; Duy, PT; Scott, P; Cutcliffe, LT; O'Neill, C; +11 more... (2013) Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture. Genome research, 23 (5). pp. 855-66. ISSN 1088-9051 DOI: 10.1101/gr.150037.112 Full text not available from this repository.

2012

Holt, KE; Baker, S; Weill, FX; Holmes, EC; Kitchen, A; Yu, J; Sangal, V; Brown, DJ; Coia, JE; Kim, DW; +8 more... (2012) Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. Nature genetics, 44 (9). pp. 1056-9. ISSN 1061-4036 DOI: 10.1038/ng.2369
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Kröger, C; Dillon, SC; Cameron, AD; Papenfort, K; Sivasankaran, SK; Hokamp, K; Chao, Y; Sittka, A; Hébrard, M; Händler, K; +11 more... (2012) The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proceedings of the National Academy of Sciences of the United States of America, 109 (20). E1277-86. ISSN 0027-8424 DOI: 10.1073/pnas.1201061109 Full text not available from this repository.

2011

Fookes, M; Schroeder, GN; Langridge, GC; Blondel, CJ; Mammina, C; Connor, TR; Seth-Smith, H; Vernikos, GS; Robinson, KS; Sanders, M; +15 more... (2011) Salmonella bongori provides insights into the evolution of the Salmonellae. PLoS pathogens, 7 (8). e1002191. ISSN 1553-7366 DOI: 10.1371/journal.ppat.1002191
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Mutreja, A; Kim, DW; Thomson, NR; Connor, TR; Lee, JH; Kariuki, S; Croucher, NJ; Choi, SY; Harris, SR; Lebens, M; +11 more... (2011) Evidence for several waves of global transmission in the seventh cholera pandemic. Nature, 477 (7365). pp. 462-5. ISSN 0028-0836 DOI: 10.1038/nature10392 Full text not available from this repository.

Petty, NK; Feltwell, T; Pickard, D; Clare, S; Toribio, AL; Fookes, M; Roberts, K; Monson, R; Nair, S; Kingsley, RA; +18 more... (2011) Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux. PLoS pathogens, 7 (4). e1002018. ISSN 1553-7366 DOI: 10.1371/journal.ppat.1002018
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2010

Morelli, G; Song, Y; Mazzoni, CJ; Eppinger, M; Roumagnac, P; Wagner, DM; Feldkamp, M; Kusecek, B; Vogler, AJ; Li, Y; +14 more... (2010) Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nature genetics, 42 (12). pp. 1140-3. ISSN 1061-4036 DOI: 10.1038/ng.705
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2009

Silby, MW; Cerdeño-Tárraga, AM; Vernikos, GS; Giddens, SR; Jackson, RW; Preston, GM; Zhang, XX; Moon, CD; Gehrig, SM; Godfrey, SA; +24 more... (2009) Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome biology, 10 (5). R51. ISSN 1465-6906 DOI: 10.1186/gb-2009-10-5-r51
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2008

Klasson, L; Walker, T; Sebaihia, M; Sanders, MJ; Quail, MA; Lord, A; Sanders, S; Earl, J; O'Neill, SL; Thomson, N; +2 more... (2008) Genome evolution of Wolbachia strain wPip from the Culex pipiens group. Molecular biology and evolution, 25 (9). pp. 1877-87. ISSN 0737-4038 DOI: 10.1093/molbev/msn133
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2007

Walker, T; Klasson, L; Sebaihia, M; Sanders, MJ; Thomson, NR; Parkhill, J; Sinkins, SP; (2007) Ankyrin repeat domain-encoding genes in the wPip strain of Wolbachia from the Culex pipiens group. BMC Biol, 5. p. 39. ISSN 1741-7007 DOI: 10.1186/1741-7007-5-39
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This list was generated on Thu Jun 29 12:15:45 2017 BST.