Items where Author is "Thomson, NR"

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Number of items: 100.

2018

Baker, KS; Dallman, TJ; Field, N; Childs, T; Mitchell, H; Day, M; Weill, FX; Lefèvre, S; Tourdjman, M; Hughes, G; +2 more... Jenkins, C; Thomson, N; (2018) Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species. Nature communications, 9 (1). p. 1462. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-03949-8
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Baker, KS; Dallman, TJ; Field, N; Childs, T; Mitchell, H; Day, M; Weill, FX; Lefèvre, S; Tourdjman, M; Hughes, G; +2 more... Jenkins, C; Thomson, N; (2018) Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance. Scientific reports, 8 (1). p. 7389. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-25764-3
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Baker, S; Thomson, N; Weill, FX; Holt, KE; (2018) Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens. Science (New York, NY), 360 (6390). pp. 733-738. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.aar3777 Full text not available from this repository.

Behar, Adi; Baker, Kate Susan; Bassal, Ravit; Ezernitchi, Analia; Valinsky, Lea; Thomson, Nicholas R; Cohen, Daniel; (2018) Microevolution and Patterns of Transmission of Shigella sonnei within Cyclic Outbreaks of Shigellosis, Israel. EMERGING INFECTIOUS DISEASES, 24 (7). pp. 1335-1339. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2407.171313
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Cain, AK; Boinett, CJ; Barquist, L; Dordel, J; Fookes, M; Mayho, M; Ellington, MJ; Goulding, D; Pickard, D; Wick, RR; +3 more... Holt, KE; Parkhill, J; Thomson, NR; (2018) Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin. Scientific reports, 8 (1). p. 9868. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-28199-y
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Domman, D; Chowdhury, F; Khan, AI; Dorman, MJ; Mutreja, A; Uddin, MI; Paul, A; Begum, YA; Charles, RC; Calderwood, SB; +6 more... Bhuiyan, TR; Harris, JB; LaRocque, RC; Ryan, ET; Qadri, F; Thomson, NR; (2018) Defining endemic cholera at three levels of spatiotemporal resolution within Bangladesh. Nature genetics. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-018-0150-8 Full text not available from this repository.

Horesh, G; Harms, A; Fino, C; Parts, L; Gerdes, K; Heinz, E; Thomson, NR; (2018) SLING: a tool to search for linked genes in bacterial datasets. Nucleic acids research. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gky738
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Longbottom, David; Sait, Michelle; Livingstone, Morag; Laroucau, Karine; Sachse, Konrad; Harris, Simon R; Thomson, Nicholas R; Seth-Smith, Helena MB; (2018) Genomic evidence that the live Chlamydia abortus vaccine strain 1B is not attenuated and has the potential to cause disease. VACCINE, 36 (25). pp. 3593-3598. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.05.042
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Loraine, J; Heinz, E; De Sousa Almeida, J; Milevskyy, O; Voravuthikunchai, SP; Srimanote, P; Kiratisin, P; Thomson, NR; Taylor, PW; (2018) Complement Susceptibility in Relation to Genome Sequence of Recent Klebsiella pneumoniae Isolates from Thai Hospitals. mSphere, 3 (6). ISSN 2379-5042 DOI: https://doi.org/10.1128/mSphere.00537-18
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Marks, M; Fookes, M; Wagner, J; Ghinai, R; Sokana, O; Sarkodie, YA; Solomon, AW; Mabey, DCW; Thomson, NR; (2018) Direct Whole-Genome Sequencing of Cutaneous Strains of Haemophilus ducreyi. Emerging infectious diseases, 24 (4). pp. 786-789. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2404.171726
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Mather, Alison E; Tu, Le Thi Phuong; Gao, Yunfeng; Clare, Simon; Mukhopadhyay, Subhankar; Goulding, David A; Nhu, Tran Do Hoang; Ha, Thanh Tuyen; Nguyen, Phu Huong Lan; Thompson, Corinne N; +22 more... Nguyen, Hoang Thu Trang; Carrique-Mas, Juan; Ngo, Tri Tue; Campbell, James I; Rabaa, Maia A; Duy, Pham Thanh; Harcourt, Katherine; Ngo, Thi Hoa; Nguyen, Vinh Trung; Schultsz, Constance; Perron, Gabriel G; Coia, John E; Brown, Derek J; Okoro, Chinyere; Parkhill, Julian; Thomson, Nicholas R; Nguyen, Van Vinh Chau; Thwaites, Guy E; Maskell, Duncan J; Dougan, Gordon; Kenney, Linda J; Baker, Stephen; (2018) New Variant of Multidrug-Resistant Salmonella enterica Serovar Typhimurium Associated with Invasive Disease in Immunocompromised Patients in Vietnam. MBIO, 9 (5). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.01056-18 Item availability may be restricted.
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Moore, S; Dongdem, AZ; Opare, D; Cottavoz, P; Fookes, M; Sadji, AY; Dzotsi, E; Dogbe, M; Jeddi, F; Bidjada, B; +12 more... Piarroux, M; Valentin, OT; Glèlè, CK; Rebaudet, S; Sow, AG; Constantin de Magny, G; Koivogui, L; Dunoyer, J; Bellet, F; Garnotel, E; Thomson, N; Piarroux, R; (2018) Dynamics of cholera epidemics from Benin to Mauritania. PLoS neglected tropical diseases, 12 (4). e0006379. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006379
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Page, Andrew J; Wailan, Alexander; Shao, Yan; Judge, Kim; Dougan, Gordon; Klemm, Elizabeth J; Thomson, Nicholas R; Keane, Jacqueline A; (2018) PlasmidTron: assembling the cause of phenotypes and genotypes from NGS data. MICROBIAL GENOMICS, 4 (3). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000164
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Rew, Vanessa; Mook, Piers; Trienekens, Suzan; Baker, Kate S; Dallman, Timothy J; Jenkins, Claire; Crook, Paul D; Thomson, Nicholas R; (2018) Whole-genome sequencing revealed concurrent outbreaks of shigellosis in the English Orthodox Jewish Community caused by multiple importations of Shigella sonnei from Israel. MICROBIAL GENOMICS, 4 (3). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000170 Item availability may be restricted.
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Skilton, RJ; Wang, Y; O'Neill, C; Filardo, S; Marsh, P; Bénard, A; Thomson, NR; Ramsey, KH; Clarke, IN; (2018) The Chlamydia muridarum plasmid revisited : new insights into growth kinetics. Wellcome open research, 3. p. 25. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.13905.1
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Zhou, Zhemin; Lundstrom, Inge; Tran-Dien, Alicia; Duchene, Sebastian; Alikhan, Nabil-Fareed; Sergeant, Martin J; Langridge, Gemma; Fotakis, Anna K; Nair, Satheesh; Stenoien, Hans K; +9 more... Hamre, Stian S; Casjens, Sherwood; Christophersen, Axel; Quince, Christopher; Thomson, Nicholas R; Weill, Francois-Xavier; Ho, Simon YW; Gilbert, M Thomas P; Achtman, Mark; (2018) Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia. CURRENT BIOLOGY, 28 (15). 2420-+. ISSN 0960-9822 DOI: https://doi.org/10.1016/j.cub.2018.05.058
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2017

Baker, KS; Campos, J; Pichel, M; Della Gaspera, A; Duarte-Martínez, F; Campos-Chacón, E; Bolaños-Acuña, HM; Guzmán-Verri, C; Mather, AE; Diaz Velasco, S; +19 more... Zamudio Rojas, ML; Forbester, JL; Connor, TR; Keddy, KH; Smith, AM; López de Delgado, EA; Angiolillo, G; Cuaical, N; Fernández, J; Aguayo, C; Morales Aguilar, M; Valenzuela, C; Morales Medrano, AJ; Sirok, A; Weiler Gustafson, N; Diaz Guevara, PL; Montaño, LA; Perez, E; Thomson, NR; (2017) Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses. Clinical microbiology and infection. ISSN 1198-743X DOI: https://doi.org/10.1016/j.cmi.2017.03.021
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Domman, D; Quilici, ML; Dorman, MJ; Njamkepo, E; Mutreja, A; Mather, AE; Delgado, G; Morales-Espinosa, R; Grimont, PAD; Lizárraga-Partida, ML; +10 more... Bouchier, C; Aanensen, DM; Kuri-Morales, P; Tarr, CL; Dougan, G; Parkhill, J; Campos, J; Cravioto, A; Weill, FX; Thomson, NR; (2017) Integrated view of Vibrio cholerae in the Americas. Science (New York, NY), 358 (6364). pp. 789-793. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.aao2136 Full text not available from this repository.

Esson, D; Gupta, S; Bailey, D; Wigley, P; Wedley, A; Mather, AE; Méric, G; Mastroeni, P; Sheppard, SK; Thomson, NR; +4 more... Parkhill, J; Maskell, DJ; Christie, G; Grant, AJ; (2017) Identification and initial characterisation of a protein involved in Campylobacter jejuni cell shape. Microbial pathogenesis. ISSN 0882-4010 DOI: https://doi.org/10.1016/j.micpath.2017.01.042
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Fookes, MC; Hadfield, J; Harris, S; Parmar, S; Unemo, M; Jensen, JS; Thomson, NR; (2017) Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure. BMC genomics, 18 (1). p. 993. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4399-6
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Garrine, Marcelino; Mandomando, Inacio; Vubil, Delfino; Nhampossa, Tacilta; Acacio, Sozinho; Li, Shan; Paulson, Joseph N; Almeida, Mathieu; Domman, Daryl; Thomson, Nicholas R; +2 more... Alonso, Pedro; Stine, Oscar Colin; (2017) Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing. PLOS NEGLECTED TROPICAL DISEASES, 11 (6). ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0005671
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Gorrie, Claire; Mirceta, Mirjana; Wick, Ryan; Judd, Louise; Wyres, Kelly; Thomson, Nicholas; Strugnell, Richard; Pratt, Nigel; Garlick, Jill; Watson, Kerrie; +5 more... Hunter, Peter; McGloughlin, Steve; Spelman, Denis; Jenney, Adam; Holt, Kathryn; (2017) Antimicrobial resistant Klebsiella pneumoniae carriage and infection in specialized geriatric care wards linked to acquisition in the referring hospital. BiorXiv. DOI: https://doi.org/10.1101/218461
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Hadfield, J; Bénard, A; Domman, D; Thomson, N; (2017) The Hidden Genomics of Chlamydia trachomatis. Current topics in microbiology and immunology. ISSN 0070-217X DOI: https://doi.org/10.1007/82_2017_39 Full text not available from this repository.

Hadfield, J; Harris, SR; Seth-Smith, HMB; Parmar, S; Andersson, P; Giffard, PM; Schachter, J; Moncada, J; Ellison, L; Vaulet, MLG; +28 more... Fermepin, MR; Radebe, F; Mendoza, S; Ouburg, S; Morré, SA; Sachse, K; Puolakkainen, M; Korhonen, SJ; Sonnex, C; Wiggins, R; Jalal, H; Brunelli, T; Casprini, P; Pitt, R; Ison, C; Savicheva, A; Shipitsyna, E; Hadad, R; Kari, L; Burton, MJ; Mabey, D; Solomon, AW; Lewis, D; Marsh, P; Unemo, M; Clarke, IN; Parkhill, J; Thomson, NR; (2017) Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome research. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.212647.116
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Henson, SP; Boinett, CJ; Ellington, MJ; Kagia, N; Mwarumba, S; Nyongesa, S; Mturi, N; Kariuki, S; Scott, JAG; Thomson, NR; +1 more... Morpeth, SC; (2017) Molecular epidemiology of Klebsiella pneumoniae invasive infections over a decade at Kilifi County Hospital in Kenya. International journal of medical microbiology, 307 (7). pp. 422-429. ISSN 1438-4221 DOI: https://doi.org/10.1016/j.ijmm.2017.07.006
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Iguchi, Atsushi; von Mentzer, Astrid; Kikuchi, Taisei; Thomson, Nicholas R; (2017) An untypeable enterotoxigenic Escherichia coli represents one of the dominant types causing human disease. MICROBIAL GENOMICS, 3 (9). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000121
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Last, Anna; Pickering, Harry; Roberts, Chrissy; Coll, Francesc; Phelan, Jody; Burr, Sarah; Cassama, Eunice; Nabicassa, Meno; Seth-Smith, Helena; Hadfield, James; +7 more... Cutliffe, Leslie; Clarke, Ian; Mabey, David; Bailey, Robin; Clark, Taane; Thomson, Nick; Holland, Martin; (2017) Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity. BioRxiv. DOI: https://doi.org/10.1101/205336
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Musicha, P; Feasey, NA; Cain, AK; Kallonen, T; Chaguza, C; Peno, C; Khonga, M; Thompson, S; Gray, KJ; Mather, AE; +4 more... Heyderman, RS; Everett, DB; Thomson, NR; Msefula, CL; (2017) Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting. The Journal of antimicrobial chemotherapy. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkx058
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Oshota, O; Conway, M; Fookes, M; Schreiber, F; Chaudhuri, RR; Yu, L; Morgan, FJE; Clare, S; Choudhary, J; Thomson, NR; +4 more... Lio, P; Maskell, DJ; Mastroeni, P; Grant, AJ; (2017) Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice. PloS one, 12 (8). e0181365. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0181365
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Page, Andrew; Wailan, Alexander; Shao, Yan; Judge, Kim; Dougan, Gordon; Klemm, Elizabeth; Thomson, Nicholas; Keane, Jacqueline; (2017) PlasmidTron: assembling the cause of phenotypes from NGS data. BiorXiv. DOI: https://doi.org/10.1101/188920
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Ramírez-Vargas, G; Quesada-Gómez, C; Acuña-Amador, L; López-Ureña, D; Murillo, T; Del Mar Gamboa-Coronado, M; Chaves-Olarte, E; Thomson, N; Rodríguez-Cavallini, E; Rodríguez, C; (2017) A Clostridium difficile lineage endemic to Costa Rican hospitals is multidrug-resistant by acquisition of chromosomal mutations and novel mobile genetic elements. Antimicrobial agents and chemotherapy, 61 (4). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.02054-16
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Seth-Smith, HM; Galán, JC; Goldenberger, D; Lewis, DA; Peuchant, O; Bébéar, C; de Barbeyrac, B; Bénard, A; Carter, I; Kok, J; +6 more... Bruisten, SM; Versteeg, B; Morré, SA; Thomson, NR; Egli, A; de Vries, HJ; (2017) Concern regarding the alleged spread of hypervirulent lymphogranuloma venereum Chlamydia trachomatis strain in Europe. Euro surveillance, 22 (15). ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2017.22.15.30511
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Seth-Smith, HMB; Buso, Leonor Sanchez; Livingstone, M; Sait, M; Harris, SR; Aitchison, KD; Vretou, Evangelia; Siarkou, VI; Laroucau, K; Sachse, K; +2 more... Longbottom, D; Thomson, NR; (2017) European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures. BMC GENOMICS, 18 (1). ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-3657-y
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Suarez-Esquivel, Marcela; Baker, Kate S; Ruiz-Villalobos, Nazareth; Hernandez-Mora, Gabriela; Barquero-Calvo, Elias; Gonzalez-Barrientos, Rocio; Castillo-Zeledon, Amanda; Jimenez-Rojas, Cesar; Chacon-Diaz, Carlos; Cloeckaert, Axel; +4 more... Chaves-Olarte, Esteban; Thomson, Nicholas R; Moreno, Edgardo; Guzman-Verri, Caterina; (2017) Brucella Genetic Variability in Wildlife Marine Mammals Populations Relates to Host Preference and Ocean Distribution. GENOME BIOLOGY AND EVOLUTION, 9 (7). pp. 1901-1912. ISSN 1759-6653 DOI: https://doi.org/10.1093/gbe/evx137
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Suarez-Esquivel, Marcela; Ruiz-Villalobos, Nazareth; Jimenez-Rojas, Cesar; Barquero-Calvo, Elias; Chacon-Diaz, Carlos; Viquez-Ruiz, Eunice; Rojas-Campos, Norman; Baker, Kate S; Oviedo-Sanchez, Gerardo; Amuy, Ernesto; +4 more... Chaves-Olarte, Esteban; Thomson, Nicholas R; Moreno, Edgardo; Guzman-Verri, Caterina; (2017) Brucella neotomae Infection in Humans, Costa Rica. EMERGING INFECTIOUS DISEASES, 23 (6). pp. 997-1000. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2306.162018
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The, HC; Florez de Sessions, P; Jie, S; Pham Thanh, D; Thompson, CN; Nguyen Ngoc Minh, C; Chu, CW; Tran, TA; Thomson, NR; Thwaites, GE; +3 more... Rabaa, MA; Hibberd, M; Baker, S; (2017) Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children. Gut microbes. ISSN 1949-0976 DOI: https://doi.org/10.1080/19490976.2017.1361093
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Thomas, Christopher M; Thomson, Nicholas R; Cerdeno-Tarraga, Ana M; Brown, Celeste J; Top, Eva M; Frost, Laura S; (2017) Annotation of plasmid genes. PLASMID, 91. pp. 61-67. ISSN 0147-619X DOI: https://doi.org/10.1016/j.plasmid.2017.03.006
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Torok, Estee; Brodrick, Hayley; Khokhar, Fahad; Blane, Beth; Polgarova, Petra; Brown, Joanne; Enoch, David; Brown, Nicholas; Summers, Charlotte; Preller, Jacobus; +4 more... Thomson, Nick; Dougan, Gordon; Parkhill, Julian; Peacock, Sharon; (2017) Prospective Surveillance and Rapid Whole-Genome Sequencing Detects Two Unsuspected Outbreaks of Carbapenemase-Producing Klebsiella pneumoniae in a UK Teaching Hospital. Open Forum Infectious Diseases, 4 (Suppl). S43-S44. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofx162.104
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Weill, FX; Domman, D; Njamkepo, E; Tarr, C; Rauzier, J; Fawal, N; Keddy, KH; Salje, H; Moore, S; Mukhopadhyay, AK; +31 more... Bercion, R; Luquero, FJ; Ngandjio, A; Dosso, M; Monakhova, E; Garin, B; Bouchier, C; Pazzani, C; Mutreja, A; Grunow, R; Sidikou, F; Bonte, L; Breurec, S; Damian, M; Njanpop-Lafourcade, BM; Sapriel, G; Page, AL; Hamze, M; Henkens, M; Chowdhury, G; Mengel, M; Koeck, JL; Fournier, JM; Dougan, G; Grimont, PAD; Parkhill, J; Holt, KE; Piarroux, R; Ramamurthy, T; Quilici, ML; Thomson, NR; (2017) Genomic history of the seventh pandemic of cholera in Africa. Science (New York, NY), 358 (6364). pp. 785-789. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.aad5901 Full text not available from this repository.

Yeung, Amy TY; Hale, Christine; Lee, Amy H; Gill, Erin E; Bushell, Wendy; Parry-Smith, David; Goulding, David; Pickard, Derek; Roumeliotis, Theodoros; Choudhary, Jyoti; +4 more... Thomson, Nick; Skarnes, William C; Dougan, Gordon; Hancock, Robert EW; (2017) Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis. NATURE COMMUNICATIONS, 8. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms15013
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Yeung, Amy TY; Hale, Christine; Lee, Amy H; Gill, Erin E; Bushell, Wendy; Parry-Smith, David; Goulding, David; Pickard, Derek; Roumeliotis, Theodoros; Choudhary, Jyoti; +4 more... Thomson, Nick; Skarnes, William C; Dougan, Gordon; Hancock, Robert EW; (2017) Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis. NATURE COMMUNICATIONS, 8. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms15013
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2016

Andersson, P; Harris, SR; Smith, HM; Hadfield, J; O'Neill, C; Cutcliffe, LT; Douglas, FP; Asche, LV; Mathews, JD; Hutton, SI; +5 more... Sarovich, DS; Tong, SY; Clarke, IN; Thomson, NR; Giffard, PM; (2016) Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages. Nature communications, 7. p. 10688. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms10688
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Baker, Kate S; Dallman, Timothy J; Behar, Adi; Weill, Francois-Xavier; Gouali, Malika; Sobel, Jeremy; Fookes, Maria; Valinsky, Lea; Gal-Mor, Ohad; Connor, Thomas R; +6 more... Nissan, Israel; Bertrand, Sophie; Parkhill, Julian; Jenkins, Claire; Cohen, Dani; Thomson, Nicholas R; (2016) Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities. EMERGING INFECTIOUS DISEASES, 22 (9). pp. 1545-1553. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2209.151953
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Chinen, Isabel; Galas, Marcelo; Tuduri, Ezequiel; Vinas, Maria Rosa; Carbonari, Carolina; Della Gaspera, Anabella; Napoli, Daniela; Aanensen, David; Argimon, Silvia; Thomson, Nicholas; +25 more... Hughes, Darren; Baker, Stephen; Guzman;Verri, Caterina; Holden, Matthew TG; Abdala, Alejandra; Alvarez, Lucia; Alvez, Beatriz; Barros, Rosana; Budall, Shirley; Campano, Constanza; Chamosa, Luciana; Cheddie, Paul; Cisterna, Daniel; De Belder, Denise; Dropa, Milena; Durand, David; Elena, Alan; Fontecha, Gustavo; Huber, Claudia; Lemos, Ana Paula; Melli, Luciano; Paul, Roxana Elizabeth; Suarez, Lesly; Torres Flores, Julian; Campos, Josefina; (2016) Whole genome sequencing identifies independent outbreaks of Shigellosis in 2010 and 2011 in La Pampa Province, Argentina. BiorXiv. DOI: https://doi.org/10.1101/049940
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Chung The, H; Rabaa, MA; Pham Thanh, D; De Lappe, N; Cormican, M; Valcanis, M; Howden, BP; Wangchuk, S; Bodhidatta, L; Mason, CJ; +12 more... Nguyen Thi Nguyen, T; Vu Thuy, D; Thompson, CN; Phu Huong Lan, N; Voong Vinh, P; Ha Thanh, T; Turner, P; Sar, P; Thwaites, G; Thomson, NR; Holt, KE; Baker, S; (2016) South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study. PLoS medicine, 13 (8). e1002055. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1002055
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Connor, TR; Owen, SV; Langridge, G; Connell, S; Nair, S; Reuter, S; Dallman, TJ; Corander, J; Tabing, KC; Le Hello, S; +15 more... Fookes, M; Doublet, B; Zhou, Z; Feltwell, T; Ellington, MJ; Herrera, S; Gilmour, M; Cloeckaert, A; Achtman, M; Parkhill, J; Wain, J; De Pinna, E; Weill, FX; Peters, T; Thomson, N; (2016) What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B. mBio, 7 (4). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.00527-16
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Di Pilato, Vincenzo; Chiarelli, Adriana; Boinett, Christine J; Riccobono, Eleonora; Harris, Simon R; D'Andrea, Marco Maria; Thomson, Nicholas R; Rossolini, Gian Maria; Giani, Tommaso; (2016) Complete Genome Sequence of the First KPC-Type Carbapenemase-Positive Proteus mirabilis Strain from a Bloodstream Infection. Genome announcements, 4 (3). ISSN 2169-8287 DOI: https://doi.org/10.1128/genomeA.00607-16
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Esson, D; Mather, AE; Scanlan, E; Gupta, S; de Vries, SP; Bailey, D; Harris, SR; McKinley, TJ; Méric, G; Berry, SK; +7 more... Mastroeni, P; Sheppard, SK; Christie, G; Thomson, NR; Parkhill, J; Maskell, DJ; Grant, AJ; (2016) Genomic variations leading to alterations in cell morphology of Campylobacter spp. Scientific reports, 6. p. 38303. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep38303
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Feasey, NA; Hadfield, J; Keddy, KH; Dallman, TJ; Jacobs, J; Deng, X; Wigley, P; Barquist Barquist, L; Langridge, GC; Feltwell, T; +37 more... Harris, SR; Mather, AE; Fookes, M; Aslett, M; Msefula, C; Kariuki, S; Maclennan, CA; Onsare, RS; Weill, FX; Le Hello, S; Smith, AM; McClelland, M; Desai, P; Parry, CM; Cheesbrough, J; French, N; Campos, J; Chabalgoity, JA; Betancor, L; Hopkins, KL; Nair, S; Humphrey, TJ; Lunguya, O; Cogan, TA; Tapia, MD; Sow, SO; Tennant, SM; Bornstein, K; Levine, MM; Lacharme-Lora, L; Everett, DB; Kingsley, RA; Parkhill, J; Heyderman, RS; Dougan, G; Gordon, MA; Thomson, NR; (2016) Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings. Nature genetics. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3644
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Follador, R; Heinz, E; Wyres, KL; Ellington, MJ; Kowarik, M; Holt, KE; Thomson, NR; (2016) The diversity of Klebsiella pneumoniae surface polysaccharides. Microbial genomics, 2 (8). e000073. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000073
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Jones-Dias, Daniela; Clemente, Lurdes; Egas, Conceicao; Froufe, Hugo; Sampaio, Daniel A; Vieira, Luis; Fookes, Maria; Thomson, Nicholas R; Manageiro, Vera; Canica, Manuela; (2016) Salmonella Enteritidis Isolate Harboring Multiple Efflux Pumps and Pathogenicity Factors, Shows Absence of O Antigen Polymerase Gene. FRONTIERS IN MICROBIOLOGY, 7. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2016.01130
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Karlsson, SL; Thomson, N; Mutreja, A; Connor, T; Sur, D; Ali, M; Clemens, J; Dougan, G; Holmgren, J; Lebens, M; (2016) Retrospective Analysis of Serotype Switching of Vibrio cholerae O1 in a Cholera Endemic Region Shows It Is a Non-random Process. PLoS neglected tropical diseases, 10 (10). e0005044. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005044
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Labbate, Maurizio; Orata, Fabini D; Petty, Nicola K; Jayatilleke, Nathasha D; King, William L; Kirchberger, Paul C; Allen, Chris; Mann, Gulay; Mutreja, Ankur; Thomson, Nicholas R; +2 more... Boucher, Yan; Charles, Ian G; (2016) A genomic island in Vibrio cholerae with VPI-1 site-specific recombination characteristics contains CRISPR-Cas and type VI secretion modules. SCIENTIFIC REPORTS, 6 (1). ISSN 2045-2322 DOI: https://doi.org/10.1038/srep36891
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Mather, Alison E; Lawson, Becki; de Pinna, Elizabeth; Wigley, Paul; Parkhill, Julian; Thomson, Nicholas R; Page, Andrew J; Holmes, Mark A; Paterson, Gavin K; (2016) Genomic Analysis of Salmonella enterica Serovar Typhimurium from Wild Passerines in England and Wales. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82 (22). pp. 6728-6735. ISSN 0099-2240 DOI: https://doi.org/10.1128/AEM.01660-16
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Njamkepo, E; Fawal, N; Tran-Dien, A; Hawkey, J; Strockbine, N; Jenkins, C; Talukder, KA; Bercion, R; Kuleshov, K; Kolínská, R; +62 more... Russell, JE; Kaftyreva, L; Accou-Demartin, M; Karas, A; Vandenberg, O; Mather, AE; Mason, CJ; Page, AJ; Ramamurthy, T; Bizet, C; Gamian, A; Carle, I; Sow, AG; Bouchier, C; Wester, AL; Lejay-Collin, M; Fonkoua, MC; Hello, SL; Blaser, MJ; Jernberg, C; Ruckly, C; Mérens, A; Page, AL; Aslett, M; Roggentin, P; Fruth, A; Denamur, E; Venkatesan, M; Bercovier, H; Bodhidatta, L; Chiou, CS; Clermont, D; Colonna, B; Egorova, S; Pazhani, GP; Ezernitchi, AV; Guigon, G; Harris, SR; Izumiya, H; Korzeniowska-Kowal, A; Lutyńska, A; Gouali, M; Grimont, F; Langendorf, C; Marejková, M; Peterson, LA; Perez-Perez, G; Ngandjio, A; Podkolzin, A; Souche, E; Makarova, M; Shipulin, GA; Ye, C; Žemličková, H; Herpay, M; Grimont, PA; Parkhill, J; Sansonetti, P; Holt, KE; Brisse, S; Thomson, NR; Weill, FX; (2016) Global phylogeography and evolutionary history of Shigella dysenteriae type 1. Nature microbiology, 1. p. 16027. ISSN 2058-5276 DOI: https://doi.org/10.1038/nmicrobiol.2016.27 Full text not available from this repository.

Pollard, DJ; Young, JC; Covarelli, V; Herrera-León, S; Connor, TR; Fookes, M; Walker, D; Echeita, A; Thomson, NR; Berger, CN; +1 more... Frankel, G; (2016) The type III secretion system effector SeoC of Salmonella enterica subspecies salamae and arizonae ADP-ribosylates Src and inhibits opsono-phagocytosis. Infection and immunity. ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.00704-16
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Suarez-Esquivel, M; Ruiz-Villalobos, N; Castillo-Zeledon, A; Jimenez-Rojas, C; Roop, RM; Comerci, DJ; Barquero-Calvo, E; Chacon-Diaz, C; Caswell, CC; Baker, KS; +6 more... Chaves-Olarte, E; Thomson, NR; Moreno, E; Letesson, JJ; de Bolle, X; Guzman-Verri, C; (2016) Brucella abortus Strain 2308 Wisconsin Genome: Importance of the Definition of Reference Strains. Frontiers in microbiology, 7. p. 1557. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2016.01557
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The, HC; Thanh, DP; Holt, KE; Thomson, NR; Baker, S; (2016) The genomic signatures of Shigella evolution, adaptation and geographical spread. Nature reviews Microbiology, 14 (4). pp. 235-50. ISSN 1740-1526 DOI: https://doi.org/10.1038/nrmicro.2016.10 Full text not available from this repository.

Wyres, KL; Wick, RR; Gorrie, C; Jenney, A; Follador, R; Thomson, NR; Holt, KE; (2016) Identification of Klebsiella capsule synthesis loci from whole genome data. Microbial genomics, 2 (12). e000102. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000102
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Wyres, Kelly; Wick, Ryan; Gorrie, Claire; Jenney, Adam; Follador, Rainer; Thomson, Nicholas; Holt, Kathryn; (2016) Identification of Klebsiella capsule synthesis loci from whole genome data. BioRxiv. DOI: https://doi.org/10.1101/071415
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2015

Baker, KS; Burnett, E; McGregor, H; Deheer-Graham, A; Boinett, C; Langridge, GC; Wailan, AM; Cain, AK; Thomson, NR; Russell, JE; +1 more... Parkhill, J; (2015) The Murray collection of pre-antibiotic era Enterobacteriacae: a unique research resource. Genome medicine, 7 (1). p. 97. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-015-0222-7
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Baker, KS; Dallman, TJ; Ashton, PM; Day, M; Hughes, G; Crook, PD; Gilbart, VL; Zittermann, S; Allen, VG; Howden, BP; +19 more... Tomita, T; Valcanis, M; Harris, SR; Connor, TR; Sintchenko, V; Howard, P; Brown, JD; Petty, NK; Gouali, M; Thanh, DP; Keddy, KH; Smith, AM; Talukder, KA; Faruque, SM; Parkhill, J; Baker, S; Weill, FX; Jenkins, C; Thomson, NR; (2015) Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study. The Lancet infectious diseases, 15 (8). pp. 913-21. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(15)00002-X Full text not available from this repository.

Chowdhury, F; Mather, AE; Begum, YA; Asaduzzaman, M; Baby, N; Sharmin, S; Biswas, R; Ikhtear Uddin, M; LaRocque, RC; Harris, JB; +5 more... Calderwood, SB; Ryan, ET; Clemens, JD; Thomson, NR; Qadri, F; (2015) Vibrio cholerae Serogroup O139: Isolation from Cholera Patients and Asymptomatic Household Family Members in Bangladesh between 2013 and 2014. PLoS neglected tropical diseases, 9 (11). e0004183. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004183
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Chung The, H; Karkey, A; Pham Thanh, D; Boinett, CJ; Cain, AK; Ellington, M; Baker, KS; Dongol, S; Thompson, C; Harris, SR; +11 more... Jombart, T; Le Thi Phuong, T; Tran Do Hoang, N; Ha Thanh, T; Shretha, S; Joshi, S; Basnyat, B; Thwaites, G; Thomson, NR; Rabaa, MA; Baker, S; (2015) A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae. EMBO molecular medicine, 7 (3). pp. 227-39. ISSN 1757-4676 DOI: https://doi.org/10.15252/emmm.201404767
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Chung The, H; Rabaa, MA; Thanh, DP; Ruekit, S; Wangchuk, S; Dorji, T; Tshering, KP; Nguyen, TN; Vinh, PV; Thanh, TH; +9 more... Minh, CN; Turner, P; Sar, P; Thwaites, G; Holt, KE; Thomson, NR; Bodhidatta, L; Jeffries Mason, C; Baker, S; (2015) Introduction and establishment of fluoroquinolone-resistant Shigella sonnei into Bhutan. Microbial genomics, 1 (6). e000042. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000042 Full text not available from this repository.

Connor, TR; Barker, CR; Baker, KS; Weill, F.-, X; Talukder, KA; Smith, AM; Stephen, B; Gouali, M; Duy Pham, T; Azmi, IJ; +10 more... da Silveira, WD; Semmler, T; Wieler, LH; Jenkins, C; Cravioto, A; Faruque, SM; Parkhill, J; Kim, DW; Keddy, KH; Thomson, NR; (2015) Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri. eLife, 4. e07335. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.07335
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Hjerde, Erik; Karlsen, Christian; Sorum, Henning; Parkhill, Julian; Willassen, Nils Peder; Thomson, Nicholas R; (2015) Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis. BMC GENOMICS, 16 (1). ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-015-1669-z
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Holt, KE; Wertheim, H; Zadoks, RN; Baker, S; Whitehouse, CA; Dance, D; Jenney, A; Connor, TR; Hsu, LY; Severin, J; +18 more... Brisse, S; Cao, H; Wilksch, J; Gorrie, C; Schultz, MB; Edwards, DJ; Nguyen, KV; Nguyen, TV; Dao, TT; Mensink, M; Minh, VL; Nhu, NT; Schultsz, C; Kuntaman, K; Newton, PN; Moore, CE; Strugnell, RA; Thomson, NR; (2015) Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health. Proceedings of the National Academy of Sciences of the United States of America, 112 (27). E3574-81. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1501049112 Full text not available from this repository.

Le, V; Nhu, NT; Cerdeno-Tarraga, A; Campbell, JI; Tuyen, HT; Nhu, TdoH; Tam, PT; Schultsz, C; Thwaites, G; Thomson, NR; +1 more... Baker, S; (2015) Genetic characterization of three qnrS1-harbouring multidrug-resistance plasmids and qnrS1-containing transposons circulating in Ho Chi Minh City, Vietnam. Journal of medical microbiology, 64 (8). pp. 869-78. ISSN 0022-2615 DOI: https://doi.org/10.1099/jmm.0.000100
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Miwanda, B; Moore, S; Muyembe, J.-, J; Nguefack-Tsague, G; Kabangwa, IK; Ndjakani, DY; Mutreja, A; Thomson, N; Thefenne, H; Garnotel, E; +4 more... Tshapenda, G; Kakongo, DK; Kalambayi, G; Piarroux, R; (2015) Antimicrobial Drug Resistance of Vibrio cholerae, Democratic Republic of the Congo. Emerging infectious diseases, 21 (5). pp. 847-851. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2105.141233
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Moore, S; Miwanda, B; Sadji, AY; Thefenne, H; Jeddi, F; Rebaudet, S; de Boeck, H; Bidjada, B; Depina, JJ; Bompangue, D; +9 more... Abedi, AA; Koivogui, L; Keita, S; Garnotel, E; Plisnier, PD; Ruimy, R; Thomson, N; Muyembe, JJ; Piarroux, R; (2015) Relationship between Distinct African Cholera Epidemics Revealed via MLVA Haplotyping of 337 Vibrio cholerae Isolates. PLoS neglected tropical diseases, 9 (6). e0003817. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0003817
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Olasz, Ferenc; Nagy, Tibor; Szabó, Móni; Kiss, János; Szmolka, Ama; Barta, Endre; van Tonder, Andries; Thomson, Nicholas; Barrow, Paul; Nagy, Béla; (2015) Genome Sequences of Three Salmonella enterica subsp. enterica Serovar Infantis Strains from Healthy Broiler Chicks in Hungary and in the United Kingdom. Genome announcements, 3 (1). ISSN 2169-8287 DOI: https://doi.org/10.1128/genomeA.01468-14
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Reuter, S; Corander, J; de Been, M; Harris, S; Cheng, L; Hall, M; Thomson, NR; McNally, A; (2015) Directional gene flow and ecological separation in Yersinia enterocolitica. Microbial genomics, 1 (3). e000030. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000030 Full text not available from this repository.

Vehkala, M; Shubin, M; Connor, TR; Thomson, NR; Corander, J; (2015) Novel R pipeline for analyzing biolog phenotypic microarray data. PloS one, 10 (3). e0118392. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0118392
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Wong, VK; Baker, S; Pickard, DJ; Parkhill, J; Page, AJ; Feasey, NA; Kingsley, RA; Thomson, NR; Keane, JA; Weill, FX; +64 more... Edwards, DJ; Hawkey, J; Harris, SR; Mather, AE; Cain, AK; Hadfield, J; Hart, PJ; Thieu, NT; Klemm, EJ; Glinos, DA; Breiman, RF; Watson, CH; Kariuki, S; Gordon, MA; Heyderman, RS; Okoro, C; Jacobs, J; Lunguya, O; Edmunds, WJ; Msefula, C; Chabalgoity, JA; Kama, M; Jenkins, K; Dutta, S; Marks, F; Campos, J; Thompson, C; Obaro, S; MacLennan, CA; Dolecek, C; Keddy, KH; Smith, AM; Parry, CM; Karkey, A; Mulholland, EK; Campbell, JI; Dongol, S; Basnyat, B; Dufour, M; Bandaranayake, D; Naseri, TT; Singh, SP; Hatta, M; Newton, P; Onsare, RS; Isaia, L; Dance, D; Davong, V; Thwaites, G; Wijedoru, L; Crump, JA; De Pinna, E; Nair, S; Nilles, EJ; Thanh, DP; Turner, P; Soeng, S; Valcanis, M; Powling, J; Dimovski, K; Hogg, G; Farrar, J; Holt, KE; Dougan, G; (2015) Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. Nature genetics, 47 (6). pp. 632-9. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3281 Full text not available from this repository.

2014

Baker, KS; Mather, AE; McGregor, H; Coupland, P; Langridge, GC; Day, M; Deheer-Graham, A; Parkhill, J; Russell, JE; Thomson, NR; (2014) The extant World War 1 dysentery bacillus NCTC1: a genomic analysis. Lancet, 384 (9955). pp. 1691-7. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(14)61789-X
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Iguchi, A; Iyoda, S; Kikuchi, T; Ogura, Y; Katsura, K; Ohnishi, M; Hayashi, T; Thomson, NR; (2014) A complete view of the genetic diversity of the Escherichia coli O-antigen biosynthesis gene cluster. DNA research. ISSN 1340-2838 DOI: https://doi.org/10.1093/dnares/dsu043
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Iguchi, A; Nagaya, Y; Pradel, E; Ooka, T; Ogura, Y; Katsura, K; Kurokawa, K; Oshima, K; Hattori, M; Parkhill, J; +6 more... Sebaihia, M; Coulthurst, S; Gotoh, N; Thomson, NR; Ewbank, JJ; Hayashi, T; (2014) Genome evolution and plasticity of Serratia marcescens, an important multidrug resistant nosocomial pathogen. Genome biology and evolution. ISSN 1759-6653 DOI: https://doi.org/10.1093/gbe/evu160
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Mather, AE; Baker, KS; McGregor, H; Coupland, P; Mather, PL; Deheer-Graham, A; Parkhill, J; Bracegirdle, P; Russell, JE; Thomson, NR; (2014) Bacillary dysentery from World War 1 and NCTC1, the first bacterial isolate in the National Collection. Lancet, 384 (9955). p. 1720. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(14)61790-6 Full text not available from this repository.

Reuter, S; Connor, TR; Barquist, L; Walker, D; Feltwell, T; Harris, SR; Fookes, M; Hall, ME; Petty, NK; Fuchs, TM; +23 more... Corander, J; Dufour, M; Ringwood, T; Savin, C; Bouchier, C; Martin, L; Miettinen, M; Shubin, M; Riehm, JM; Laukkanen-Ninios, R; Sihvonen, LM; Siitonen, A; Skurnik, M; Falcão, JP; Fukushima, H; Scholz, HC; Prentice, MB; Wren, BW; Parkhill, J; Carniel, E; Achtman, M; McNally, A; Thomson, NR; (2014) Parallel independent evolution of pathogenicity within the genus Yersinia. Proceedings of the National Academy of Sciences of the United States of America, 111 (18). pp. 6768-73. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1317161111 Full text not available from this repository.

2013

Davies, MR; Broadbent, SE; Harris, SR; Thomson, NR; van der Woude, MW; (2013) Horizontally acquired glycosyltransferase operons drive salmonellae lipopolysaccharide diversity. PLoS genetics, 9 (6). e1003568. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1003568
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Holt, KathrynE; Tran Vu Thieu, Nga; Duy Pham, Thanh; Ha, Vinh; Kim, DongWook; My Phan Vu, Tra; Campbell, JamesI; Nguyen van Minh, Hoang; Nguyen Thanh, Vinh; Pham Van, Minh; +20 more... Cao Thu, Thuy; Tran Thi Thu, Nga; Thompson, Corinne; Tran Thi Ngoc, Dung; Nguyen Thi Khanh, Nhu; Phat Voong, Vinh; Pham Thi Ngoc, Tuyet; Hoang le, Phuc; Nguyen Thi Nam, Lien; Bui Duc, Phu; Nguyen Thi Thuy, Ai; Nguyen Manh, Tien; Nguyen, Dong; Parry, ChristopherM; Tran Tinh, Hien; Farrar, JeremyJ; Parkhill, Julian; Dougan, Gordon; Thomson, NicholasR; Baker, Stephen; (2013) Tracking the establishment of local endemic populations of an emergent enteric pathogen. Proceedings of the National Academy of Sciences of the United States of America, 110 (43). pp. 17522-17527. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1308632110 Full text not available from this repository.

Hopkinson, N; Wallis, C; Higgins, B; Gaduzo, S; Sherrington, R; Keilty, S; Stern, M; Britton, J; Bush, A; Moxham, J; +438 more... Sylvester, K; Griffiths, V; Sutherland, T; Crossingham, I; Raju, R; Spencer, C; Safavi, S; Deegan, P; Seymour, J; Hickman, K; Hughes, J; Wieboldt, J; Shaheen, F; Peedell, C; Mackenzie, N; Nicholl, D; Jolley, C; Crooks, G; Crooks, G; Dow, C; Deveson, P; Bintcliffe, O; Gray, B; Kumar, S; Haney, S; Docherty, M; Thomas, A; Chua, F; Dwarakanath, A; Summers, G; Prowse, K; Lytton, S; Ong, YE; Graves, J; Banerjee, T; English, P; Leonard, A; Brunet, M; Chaudhry, N; Ketchell, RI; Cummings, N; Lebus, J; Sharp, C; Meadows, C; Harle, A; Stewart, T; Parry, D; Templeton-Wright, S; Moore-Gillon, J; Stratford- Martin, J; Saini, S; Matusiewicz, S; Merritt, S; Dowson, L; Satkunam, K; Hodgson, L; Suh, ES; Durrington, H; Browne, E; Walters, N; Steier, J; Barry, S; Griffiths, M; Hart, N; Nikolic, M; Berry, M; Thomas, A; Miller, J; McNicholl, D; Marsden, P; Warwick, G; Barr, L; Adeboyeku, D; Mohd Noh, MS; Griffiths, P; Davies, L; Quint, J; Lyall, R; Shribman, J; Collins, A; Goldman, J; Bloch, S; Gill, A; Man, W; Christopher, A; Yasso, R; Rajhan, A; Shrikrishna, D; Moore, C; Absalom, G; Booton, R; Fowler, RW; Mackinlay, C; Sapey, E; Lock, S; Walker, P; Jha, A; Satia, I; Bradley, B; Mustfa, N; Haqqee, R; Thomas, M; Patel, A; Redington, A; Pillai, A; Keaney, N; Fowler, S; Lowe, L; Brennan, A; Morrison, D; Murray, C; Hankinson, J; Dutta, P; Maddocks, M; Pengo, M; Curtis, K; Rafferty, G; Hutchinson, J; Whitfield, R; Turner, S; Breen, R; Naveed, SU; Goode, C; Esterbrook, G; Ahmed, L; Walker, W; Ford, D; Connett, G; Davidson, P; Elston, W; Stanton, A; Morgan, D; Myerson, J; Maxwell, D; Harrris, A; Parmar, S; Houghton, C; Winter, R; Puthucheary, Z; Thomson, F; Sturney, S; Harvey, J; Haslam, PL; Patel, I; Jennings, D; Range, S; Mallia-Milanes, B; Collett, A; Tate, P; Russell, R; Feary, J; O'Driscoll, R; Eaden, J; Round, J; Sharkey, E; Montgomery, M; Vaughan, S; Scheele, K; Lithgow, A; Partridge, S; Chavasse, R; Restrick, L; Agrawal, S; Abdallah, S; Lacy-Colson, A; Adams, N; Mitchell, S; Haja Mydin, H; Ward, A; Denniston, S; Steel, M; Ghosh, D; Connellan, S; Rigge, L; Williams, R; Grove, A; Anwar, S; Dobson, L; Hosker, H; Stableforth, D; Greening, N; Howell, T; Casswell, G; Davies, S; Tunnicliffe, G; Mitchelmore, P; Phitidis, E; Robinson, L; Prowse, K; Bafadhel, M; Robinson, G; Boland, A; Lipman, M; Bourke, S; Kaul, S; Cowie, C; Forrest, I; Starren, E; Burke, H; Furness, J; Bhowmik, A; Everett, C; Seaton, D; Holmes, S; Doe, S; Parker, S; Graham, A; Paterson, I; Maqsood, U; Ohri, C; Iles, P; Kemp, S; Iftikhar, A; Carlin, C; Fletcher, T; Emerson, P; Beasley, V; Ramsay, M; Buttery, R; Mungall, S; Crooks, S; Ridyard, J; Ross, D; Guadagno, A; Holden, E; Coutts, I; Cullen, K; O'Connor, S; Barker, J; Sloper, K; Watson, J; Smith, P; Anderson, P; Brown, L; Nyman, C; Milburn, H; Clive, A; Serlin, M; Bolton, C; Fuld, J; Powell, H; Dayer, M; Woolhouse, I; Georgiadi, A; Leonard, H; Dodd, J; Campbell, I; Ruiz, G; Zurek, A; Paton, JY; Malin, A; Wood, F; Hynes, G; Connell, D; Spencer, D; Brown, S; Smith, D; Cooper, D; O'Kane, C; Hicks, A; Creagh-Brown, B; Lordan, J; Nickol, A; Primhak, R; Fleming, L; Powrie, D; Brown, J; Zoumot, Z; Elkin, S; Szram, J; Scaffardi, A; Marshall, R; Macdonald, I; Lightbody, D; Farmer, R; Wheatley, I; Radnan, P; Lane, I; Booth, A; Tilbrook, S; Capstick, T; Hewitt, L; McHugh, M; Nelson, C; Wilson, P; Padmanaban, V; White, J; Davison, J; O'Callaghan, U; Hodson, M; Edwards, J; Campbell, C; Ward, S; Wooler, E; Ringrose, E; Bridges, D; Matthew Hodson; John Edwards; Colin Campbell; Simon Ward; Edwina Wooler; Elizabeth Ringrose; Diana Bridges; Rosalind Backham; Kim Randall; Tracey Mathieson; Long, A; Parkes, M; Clarke, S; Allen, B; Connelly, C; Forster, G; Hoadley, J; Martin, K; Barnham, K; Khan, K; Munday, M; Edwards, C; O'Hara, D; Turner, S; Pieri-Davies, S; Ford, K; Daniels, T; Wright, J; Towns, R; Fern, K; Butcher, J; Burgin, K; Winter, B; Freeman, D; Olive, S; Gray, L; Pye, K; Roots, D; Cox, N; Davies, CA; Wicker, J; Hilton, K; Lloyd, J; MacBean, V; Wood, M; Kowal, J; Downs, J; Ryan, H; Guyatt, F; Nicoll, D; Lyons, E; Narasimhan, D; Rodman, A; Walmsley, S; Newey, A; Buxton, M; Dewar, M; Cooper, A; Reilly, J; Lloyd, J; Macmillan, AB; Roots, D; Olley, A; Voase, N; Martin, S; McCarvill, I; Christensen, A; Agate, R; Heslop, K; Timlett, A; Hailes, K; Davey, C; Pawulska, B; Lane, A; Ioakim, S; Hough, A; Treharne, J; Jones, H; Winter-Burke, A; Miller, L; Connolly, B; Bingham, L; Fraser, U; Bott, J; Johnston, C; Graham, A; Curry, D; Sumner, H; Costello, CA; Bartoszewicz, C; Badman, R; Williamson, K; Taylor, A; Purcell, H; Barnett, E; Molloy, A; Crawfurd, L; Collins, N; Monaghan, V; Mir, M; Lord, V; Stocks, J; Edwards, A; Greenhalgh, T; Lenney, W; McKee, M; McAuley, D; Majeed, A; Cookson, J; Baker, E; Janes, S; Wedzicha, W; Lomas Dean, D; Harrison, B; Davison, T; Calverley, P; Wilson, R; Stockley, R; Ayres, J; Gibson, J; Simpson, J; Burge, S; Warner, J; Lenney, W; Thomson, N; Davies, P; Woodcock, A; Woodhead, M; Spiro, S; Ormerod, L; Bothamley, G; Partridge, M; Shields, M; Montgomery, H; Simonds, A; Barnes, P; Durham, S; Malone, S; Arabnia, G; Olivier, S; Gardiner, K; Edwards, S; (2013) Children must be protected from the tobacco industry's marketing tactics. BMJ (Clinical research ed), 347. f7358. ISSN 0959-8138 DOI: https://doi.org/10.1136/bmj.f7358
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Mather, AE; Reid, SW; Maskell, DJ; Parkhill, J; Fookes, MC; Harris, SR; Brown, DJ; Coia, JE; Mulvey, MR; Gilmour, MW; +11 more... Petrovska, L; de Pinna, E; Kuroda, M; Akiba, M; Izumiya, H; Connor, TR; Suchard, MA; Lemey, P; Mellor, DJ; Haydon, DT; Thomson, NR; (2013) Distinguishable Epidemics of Multidrug-Resistant Salmonella Typhimurium DT104 in Different Hosts. Science (New York, NY), 341 (6153). pp. 1514-7. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.1240578 Full text not available from this repository.

Seth-Smith, HM; Harris, SR; Skilton, RJ; Radebe, FM; Golparian, D; Shipitsyna, E; Duy, PT; Scott, P; Cutcliffe, LT; O'Neill, C; +11 more... Parmar, S; Pitt, R; Baker, S; Ison, CA; Marsh, P; Jalal, H; Lewis, DA; Unemo, M; Clarke, IN; Parkhill, J; Thomson, NR; (2013) Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture. Genome research, 23 (5). pp. 855-66. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.150037.112 Full text not available from this repository.

2012

Harris, SR; Clarke, IN; Seth-Smith, HM; Solomon, AW; Cutcliffe, LT; Marsh, P; Skilton, RJ; Holland, MJ; Mabey, D; Peeling, RW; +14 more... Lewis, DA; Spratt, BG; Unemo, M; Persson, K; Bjartling, C; Brunham, R; de Vries, HJ; Morré, SA; Speksnijder, A; Bébéar, CM; Clerc, M; de Barbeyrac, B; Parkhill, J; Thomson, NR; (2012) Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing. Nature genetics, 44 (4). 413-9, S1. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.2214
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Holt, KE; Baker, S; Weill, FX; Holmes, EC; Kitchen, A; Yu, J; Sangal, V; Brown, DJ; Coia, JE; Kim, DW; +8 more... Choi, SY; Kim, SH; da Silveira, WD; Pickard, DJ; Farrar, JJ; Parkhill, J; Dougan, G; Thomson, NR; (2012) Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. Nature genetics, 44 (9). pp. 1056-9. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.2369
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Kröger, C; Dillon, SC; Cameron, AD; Papenfort, K; Sivasankaran, SK; Hokamp, K; Chao, Y; Sittka, A; Hébrard, M; Händler, K; +11 more... Colgan, A; Leekitcharoenphon, P; Langridge, GC; Lohan, AJ; Loftus, B; Lucchini, S; Ussery, DW; Dorman, CJ; Thomson, NR; Vogel, J; Hinton, JC; (2012) The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proceedings of the National Academy of Sciences of the United States of America, 109 (20). E1277-86. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1201061109 Full text not available from this repository.

2011

Fookes, M; Schroeder, GN; Langridge, GC; Blondel, CJ; Mammina, C; Connor, TR; Seth-Smith, H; Vernikos, GS; Robinson, KS; Sanders, M; +15 more... Petty, NK; Kingsley, RA; Bäumler, AJ; Nuccio, SP; Contreras, I; Santiviago, CA; Maskell, D; Barrow, P; Humphrey, T; Nastasi, A; Roberts, M; Frankel, G; Parkhill, J; Dougan, G; Thomson, NR; (2011) Salmonella bongori provides insights into the evolution of the Salmonellae. PLoS pathogens, 7 (8). e1002191. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1002191
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Mutreja, A; Kim, DW; Thomson, NR; Connor, TR; Lee, JH; Kariuki, S; Croucher, NJ; Choi, SY; Harris, SR; Lebens, M; +11 more... Niyogi, SK; Kim, EJ; Ramamurthy, T; Chun, J; Wood, JL; Clemens, JD; Czerkinsky, C; Nair, GB; Holmgren, J; Parkhill, J; Dougan, G; (2011) Evidence for several waves of global transmission in the seventh cholera pandemic. Nature, 477 (7365). pp. 462-5. ISSN 0028-0836 DOI: https://doi.org/10.1038/nature10392 Full text not available from this repository.

Petty, NK; Feltwell, T; Pickard, D; Clare, S; Toribio, AL; Fookes, M; Roberts, K; Monson, R; Nair, S; Kingsley, RA; +18 more... Bulgin, R; Wiles, S; Goulding, D; Keane, T; Corton, C; Lennard, N; Harris, D; Willey, D; Rance, R; Yu, L; Choudhary, JS; Churcher, C; Quail, MA; Parkhill, J; Frankel, G; Dougan, G; Salmond, GP; Thomson, NR; (2011) Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux. PLoS pathogens, 7 (4). e1002018. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1002018
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2010

Morelli, G; Song, Y; Mazzoni, CJ; Eppinger, M; Roumagnac, P; Wagner, DM; Feldkamp, M; Kusecek, B; Vogler, AJ; Li, Y; +14 more... Cui, Y; Thomson, NR; Jombart, T; Leblois, R; Lichtner, P; Rahalison, L; Petersen, JM; Balloux, F; Keim, P; Wirth, T; Ravel, J; Yang, R; Carniel, E; Achtman, M; (2010) Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nature genetics, 42 (12). pp. 1140-3. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.705
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2009

Silby, MW; Cerdeño-Tárraga, AM; Vernikos, GS; Giddens, SR; Jackson, RW; Preston, GM; Zhang, XX; Moon, CD; Gehrig, SM; Godfrey, SA; +24 more... Knight, CG; Malone, JG; Robinson, Z; Spiers, AJ; Harris, S; Challis, GL; Yaxley, AM; Harris, D; Seeger, K; Murphy, L; Rutter, S; Squares, R; Quail, MA; Saunders, E; Mavromatis, K; Brettin, TS; Bentley, SD; Hothersall, J; Stephens, E; Thomas, CM; Parkhill, J; Levy, SB; Rainey, PB; Thomson, NR; (2009) Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome biology, 10 (5). R51. ISSN 1465-6906 DOI: https://doi.org/10.1186/gb-2009-10-5-r51
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2008

Klasson, L; Walker, T; Sebaihia, M; Sanders, MJ; Quail, MA; Lord, A; Sanders, S; Earl, J; O'Neill, SL; Thomson, N; +2 more... Sinkins, SP; Parkhill, J; (2008) Genome evolution of Wolbachia strain wPip from the Culex pipiens group. Molecular biology and evolution, 25 (9). pp. 1877-87. ISSN 0737-4038 DOI: https://doi.org/10.1093/molbev/msn133
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2007

Walker, T; Klasson, L; Sebaihia, M; Sanders, MJ; Thomson, NR; Parkhill, J; Sinkins, SP; (2007) Ankyrin repeat domain-encoding genes in the wPip strain of Wolbachia from the Culex pipiens group. BMC biology, 5. p. 39. ISSN 1741-7007 DOI: https://doi.org/10.1186/1741-7007-5-39
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This list was generated on Wed Jan 16 07:20:35 2019 GMT.