Items where Author is "Funk, S"
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Number of items: 41.
2018
Checchi, F;
Funk, S;
Chandramohan, D;
Chappuis, F;
Haydon, DT;
(2018)
The impact of passive case detection on the transmission dynamics of gambiense Human African Trypanosomiasis.
PLoS neglected tropical diseases, 12 (4).
e0006276.
ISSN 1935-2727
DOI: https://doi.org/10.1371/journal.pntd.0006276
Faria, NR;
Kraemer, MUG;
Hill, SC;
Goes de Jesus, J;
Aguiar, RS;
Iani, FCM;
Xavier, J;
Quick, J;
du Plessis, L;
Dellicour, S;
+71 more...
Thézé, J;
Carvalho, RDO;
Baele, G;
Wu, CH;
Silveira, PP;
Arruda, MB;
Pereira, MA;
Pereira, GC;
Lourenço, J;
Obolski, U;
Abade, L;
Vasylyeva, TI;
Giovanetti, M;
Yi, D;
Weiss, DJ;
Wint, GRW;
Shearer, FM;
Funk, S;
Nikolay, B;
Fonseca, V;
Adelino, TER;
Oliveira, MAA;
Silva, MVF;
Sacchetto, L;
Figueiredo, PO;
Rezende, IM;
Mello, EM;
Said, RFC;
Santos, DA;
Ferraz, ML;
Brito, MG;
Santana, LF;
Menezes, MT;
Brindeiro, RM;
Tanuri, A;
Dos Santos, FCP;
Cunha, MS;
Nogueira, JS;
Rocco, IM;
da Costa, AC;
Komninakis, SCV;
Azevedo, V;
Chieppe, AO;
Araujo, ESM;
Mendonça, MCL;
Dos Santos, CC;
Dos Santos, CD;
Mares-Guia, AM;
Nogueira, RMR;
Sequeira, PC;
Abreu, RG;
Garcia, MHO;
Abreu, AL;
Okumoto, O;
Kroon, EG;
de Albuquerque, CFC;
Lewandowski, K;
Pullan, ST;
Carroll, M;
de Oliveira, T;
Sabino, EC;
Souza, RP;
Suchard, MA;
Lemey, P;
Trindade, GS;
Drumond, BP;
Filippis, AMB;
Loman, NJ;
Cauchemez, S;
Alcantara, LCJ;
Pybus, OG;
(2018)
Genomic and epidemiological monitoring of yellow fever virus transmission potential.
Science (New York, NY).
ISSN 0036-8075
DOI: https://doi.org/10.1126/science.aat7115
Full text not available from this repository.
Finger, F;
Kucharski, A;
Funk, S;
Siddiqui, R;
White, K;
Edmunds, J;
(2018)
Real-time analysis of the diphtheria outbreak amongst forcibly displaced Myanmar nationals in Bangladesh.
F1000Research, F1000Research.
DOI: https://doi.org/10.7490/f1000research.1115484.1
Gastañaduy, PA;
Funk, S;
Paul, P;
Tatham, L;
Fisher, N;
Budd, J;
Fowler, B;
de Fijter, S;
DiOrio, M;
Wallace, GS;
+1 more...
Grenfell, B;
(2018)
Impact of public health responses during a measles outbreak in an Amish community in Ohio: modelling the dynamics of transmission.
American journal of epidemiology.
ISSN 0002-9262
DOI: https://doi.org/10.1093/aje/kwy082
Item availability may be restricted.
Gilligan, PH;
Downey, DG;
Elborn, JS;
Flume, PA;
Funk, S;
Gilpin, D;
Kidd, TJ;
McCaughan, J;
Millar, BC;
Murphy, PG;
+3 more...
Rendall, JC;
Tunney, MM;
Moore, JE;
(2018)
"Pathogen eradication" and "Emerging pathogens": Difficult definitions in cystic fibrosis.
Journal of clinical microbiology.
ISSN 0095-1137
DOI: https://doi.org/10.1128/JCM.00193-18
Item availability may be restricted.
Kucharski, AJ;
Kama, M;
Watson, CH;
Aubry, M;
Funk, S;
Henderson, AD;
Brady, OJ;
Vanhomwegen, J;
Manuguerra, JC;
Lau, CL;
+6 more...
Edmunds, WJ;
Aaskov, J;
Nilles, EJ;
Cao-Lormeau, VM;
Hué, S;
Hibberd, ML;
(2018)
Using paired serology and surveillance data to quantify dengue transmission and control during a large outbreak in Fiji.
eLife, 7.
ISSN 2050-084X
DOI: https://doi.org/10.7554/eLife.34848
O'Reilly, KM;
Lowe, R;
Edmunds, WJ;
Mayaud, P;
Kucharski, A;
Eggo, RM;
Funk, S;
Bhatia, D;
Khan, K;
Kraemer, MUG;
+8 more...
Wilder-Smith, A;
Rodrigues, LC;
Brasil, P;
Massad, E;
Jaenisch, T;
Cauchemez, S;
Brady, OJ;
Yakob, L;
(2018)
Projecting the end of the Zika virus epidemic in Latin America: a modelling analysis.
BMC medicine, 16 (1).
p. 180.
ISSN 1741-7015
DOI: https://doi.org/10.1186/s12916-018-1158-8
2017
Funk, S;
Ciglenecki, I;
Tiffany, A;
Gignoux, E;
Camacho, A;
Eggo, RM;
Kucharski, AJ;
Edmunds, WJ;
Bolongei, J;
Azuma, P;
+9 more...
Clement, P;
Alpha, TS;
Sterk, E;
Telfer, B;
Engel, G;
Parker, LA;
Suzuki, M;
Heijenberg, N;
Reeder, B;
(2017)
The impact of control strategies and behavioural changes on the elimination of Ebola from Lofa County, Liberia.
Philosophical transactions of the Royal Society of London Series B, Biological sciences, 372 (1721).
ISSN 0962-8436
DOI: https://doi.org/10.1098/rstb.2016.0302
Lau, MS;
Dalziel, BD;
Funk, S;
McClelland, A;
Tiffany, A;
Riley, S;
Metcalf, CJ;
Grenfell, BT;
(2017)
Spatial and temporal dynamics of superspreading events in the 2014-2015 West Africa Ebola epidemic.
Proceedings of the National Academy of Sciences of the United States of America.
ISSN 0027-8424
DOI: https://doi.org/10.1073/pnas.1614595114
Lau, MSY;
Gibson, GJ;
Adrakey, H;
McClelland, A;
Riley, S;
Zelner, J;
Streftaris, G;
Funk, S;
Metcalf, J;
Dalziel, BD;
+1 more...
Grenfell, BT;
(2017)
A mechanistic spatio-temporal framework for modelling individual-to-individual transmission-With an application to the 2014-2015 West Africa Ebola outbreak.
PLoS computational biology, 13 (10).
e1005798.
ISSN 1553-734X
DOI: https://doi.org/10.1371/journal.pcbi.1005798
Marks, M;
Mitjà, O;
Fitzpatrick, C;
Asiedu, K;
Solomon, AW;
Mabey, DC;
Funk, S;
(2017)
Mathematical Modeling of Programmatic Requirements for Yaws Eradication.
Emerging infectious diseases, 23 (1).
pp. 22-28.
ISSN 1080-6040
DOI: https://doi.org/10.3201/eid2301.160487
Netto, EM;
Moreira-Soto, A;
Pedroso, C;
Höser, C;
Funk, S;
Kucharski, AJ;
Rockstroh, A;
Kümmerer, BM;
Sampaio, GS;
Luz, E;
+13 more...
Vaz, SN;
Dias, JP;
Bastos, FA;
Cabral, R;
Kistemann, T;
Ulbert, S;
de Lamballerie, X;
Jaenisch, T;
Brady, OJ;
Drosten, C;
Sarno, M;
Brites, C;
Drexler, JF;
(2017)
High Zika Virus Seroprevalence in Salvador, Northeastern Brazil Limits the Potential for Further Outbreaks.
mBio, 8 (6).
ISSN 2150-7511
DOI: https://doi.org/10.1128/mBio.01390-17
Peppa, M;
Edmunds, WJ;
Funk, S;
(2017)
Disease severity determines health-seeking behaviour amongst individuals with influenza-like illness in an internet-based cohort.
BMC infectious diseases, 17 (1).
p. 238.
ISSN 1471-2334
DOI: https://doi.org/10.1186/s12879-017-2337-5
Yakob, L;
Funk, S;
Camacho, A;
Brady, O;
Edmunds, WJ;
(2017)
Aedes aegypti Control Through Modernized, Integrated Vector Management.
PLoS currents, 9.
ISSN 2157-3999
DOI: https://doi.org/10.1371/currents.outbreaks.45deb8e03a438c4d088afb4fafae8747
2016
Camacho, A;
Eggo, RM;
Goeyvaerts, N;
Vandebosch, A;
Mogg, R;
Funk, S;
Kucharski, AJ;
Watson, CH;
Vangeneugden, T;
Edmunds, WJ;
(2016)
Real-time dynamic modelling for the design of a cluster-randomized phase 3 Ebola vaccine trial in Sierra Leone.
Vaccine, 35 (4).
pp. 544-551.
ISSN 0264-410X
DOI: https://doi.org/10.1016/j.vaccine.2016.12.019
Funk, S;
Camacho, A;
Kucharski, AJ;
Eggo, RM;
Edmunds, WJ;
(2016)
Real-time forecasting of infectious disease dynamics with a stochastic semi-mechanistic model.
Epidemics.
ISSN 1755-4365
DOI: https://doi.org/10.1016/j.epidem.2016.11.003
Funk, S;
Kucharski, AJ;
Camacho, A;
Eggo, RM;
Yakob, L;
Murray, LM;
Edmunds, WJ;
(2016)
Comparative Analysis of Dengue and Zika Outbreaks Reveals Differences by Setting and Virus.
PLoS neglected tropical diseases, 10 (12).
e0005173.
ISSN 1935-2727
DOI: https://doi.org/10.1371/journal.pntd.0005173
Kucharski, AJ;
Eggo, RM;
Watson, CH;
Camacho, A;
Funk, S;
Edmunds, WJ;
(2016)
Effectiveness of Ring Vaccination as Control Strategy for Ebola Virus Disease.
Emerging infectious diseases, 22 (1).
pp. 105-108.
ISSN 1080-6040
DOI: https://doi.org/10.3201/eid2201.151410
Kucharski, AJ;
Funk, S;
Eggo, RM;
Mallet, HP;
Edmunds, WJ;
Nilles, EJ;
(2016)
Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013-14 French Polynesia Outbreak.
PLoS neglected tropical diseases, 10 (5).
e0004726.
ISSN 1935-2727
DOI: https://doi.org/10.1371/journal.pntd.0004726
2015
Camacho, A;
Eggo, RM;
Funk, S;
Watson, CH;
Kucharski, AJ;
Edmunds, WJ;
(2015)
Estimating the probability of demonstrating vaccine efficacy in the declining Ebola epidemic: a Bayesian modelling approach.
BMJ open, 5 (12).
e009346.
ISSN 2044-6055
DOI: https://doi.org/10.1136/bmjopen-2015-009346
Camacho, A;
Kucharski, A;
Aki-Sawyerr, Y;
White, MA;
Flasche, S;
Baguelin, M;
Pollington, T;
Carney, JR;
Glover, R;
Smout, E;
+3 more...
Tiffany, A;
Edmunds, WJ;
Funk, S;
(2015)
Temporal Changes in Ebola Transmission in Sierra Leone and Implications for Control Requirements: a Real-time Modelling Study.
PLoS currents, 7.
ISSN 2157-3999
DOI: https://doi.org/10.1371/currents.outbreaks.406ae55e83ec0b5193e30856b9235ed2
Checchi, F;
Funk, S;
Chandramohan, D;
Haydon, DT;
Chappuis, F;
(2015)
Updated estimate of the duration of the meningo-encephalitic stage in gambiense human African trypanosomiasis.
BMC research notes, 8 (1).
p. 292.
ISSN 1756-0500
DOI: https://doi.org/10.1186/s13104-015-1244-3
Eggo, RM;
Watson, CH;
Camacho, A;
Kucharski, AJ;
Funk, S;
Edmunds, WJ;
(2015)
Duration of Ebola virus RNA persistence in semen of survivors: population-level estimates and projections.
Euro surveillance, 20 (48).
ISSN 1025-496X
DOI: https://doi.org/10.2807/1560-7917.ES.2015.20.48.30083
Heesterbeek, H;
Anderson, RM;
Andreasen, V;
Bansal, S;
De Angelis, D;
Dye, C;
Eames, KT;
Edmunds, WJ;
Frost, SD;
Funk, S;
+13 more...
Hollingsworth, TD;
House, T;
Isham, V;
Klepac, P;
Lessler, J;
Lloyd-Smith, JO;
Metcalf, CJ;
Mollison, D;
Pellis, L;
Pulliam, JR;
Roberts, MG;
Viboud, C;
Isaac Newton Institute IDD Collaboration;
(2015)
Modeling infectious disease dynamics in the complex landscape of global health.
Science (New York, NY), 347 (6227).
aaa4339.
ISSN 0036-8075
DOI: https://doi.org/10.1126/science.aaa4339
Full text not available from this repository.
Kucharski, AJ;
Camacho, A;
Checchi, F;
Waldman, R;
Grais, RF;
Cabrol, J.-, C;
Briand, S;
Baguelin, M;
Flasche, S;
Funk, S;
+1 more...
Edmunds, WJ;
(2015)
Evaluation of the Benefits and Risks of Introducing Ebola Community Care Centers, Sierra Leone.
Emerging infectious diseases, 21 (3).
pp. 393-399.
ISSN 1080-6040
DOI: https://doi.org/10.3201/eid2103.141892
Kucharski, AJ;
Camacho, A;
Flasche, S;
Glover, RE;
Edmunds, WJ;
Funk, S;
(2015)
Measuring the impact of Ebola control measures in Sierra Leone.
Proceedings of the National Academy of Sciences of the United States of America, 112 (46).
pp. 14366-71.
ISSN 0027-8424
DOI: https://doi.org/10.1073/pnas.1508814112
Rosello, A;
Mossoko, M;
Flasche, S;
Van Hoek, AJ;
Mbala, P;
Camacho, A;
Funk, S;
Kucharski, A;
Ilunga, BK;
Edmunds, WJ;
+3 more...
Piot, P;
Baguelin, M;
Muyembe Tamfum, JJ;
(2015)
Ebola virus disease in the Democratic Republic of the Congo, 1976-2014.
eLife, 4.
ISSN 2050-084X
DOI: https://doi.org/10.7554/eLife.09015
2014
Adler, AJ;
Eames, KT;
Funk, S;
Edmunds, WJ;
(2014)
Incidence and risk factors for influenza-like-illness in the UK: online surveillance using Flusurvey.
BMC infectious diseases, 14 (1).
p. 232.
ISSN 1471-2334
DOI: https://doi.org/10.1186/1471-2334-14-232
Bajardi, P;
Paolotti, D;
Vespignani, A;
Eames, K;
Funk, S;
Edmunds, WJ;
Turbelin, C;
Debin, M;
Colizza, V;
Smallenburg, R;
+9 more...
Koppeschaar, C;
Franco, AO;
Faustino, V;
Carnahan, A;
Rehn, M;
Merletti, F;
Douwes, J;
Firestone, R;
Richiardi, L;
(2014)
Association between Recruitment Methods and Attrition in Internet-Based Studies.
PloS one, 9 (12).
e114925.
ISSN 1932-6203
DOI: https://doi.org/10.1371/journal.pone.0114925
Bajardi, P;
Vespignani, A;
Funk, S;
Eames, KT;
Edmunds, WJ;
Turbelin, C;
Debin, M;
Colizza, V;
Smallenburg, R;
Koppeschaar, CE;
+5 more...
Franco, AO;
Faustino, V;
Carnahan, A;
Rehn, M;
Paolotti, D;
(2014)
Determinants of follow-up participation in the internet-based European Influenza surveillance platform Influenzanet.
Journal of medical Internet research, 16 (3).
e78.
ISSN 1439-4456
DOI: https://doi.org/10.2196/jmir.3010
Blumberg, S;
Funk, S;
Pulliam, JR;
(2014)
Detecting differential transmissibilities that affect the size of self-limited outbreaks.
PLoS pathogens, 10 (10).
e1004452.
ISSN 1553-7366
DOI: https://doi.org/10.1371/journal.ppat.1004452
Camacho, A;
Kucharski, AJ;
Funk, S;
Breman, J;
Piot, P;
Edmunds, WJ;
(2014)
Potential for large outbreaks of Ebola virus disease.
Epidemics, 9.
pp. 70-8.
ISSN 1755-4365
DOI: https://doi.org/10.1016/j.epidem.2014.09.003
Funk, S;
Bansal, S;
Bauch, CT;
Eames, KT;
Edmunds, WJ;
Galvani, AP;
Klepac, P;
(2014)
Nine challenges in incorporating the dynamics of behaviour in infectious diseases models.
Epidemics, 10.
pp. 21-5.
ISSN 1755-4365
DOI: https://doi.org/10.1016/j.epidem.2014.09.005
Funk, S;
Knight, GM;
Jansen, VA;
(2014)
Ebola: the power of behaviour change.
Nature, 515 (7528).
p. 492.
ISSN 0028-0836
DOI: https://doi.org/10.1038/515492b
Full text not available from this repository.
Funk, S;
Piot, P;
(2014)
Mapping Ebola in wild animals for better disease control.
eLife, 3.
ISSN 2050-084X
DOI: https://doi.org/10.7554/eLife.04565
Hollingsworth, TD;
Pulliam, JR;
Funk, S;
Truscott, JE;
Isham, V;
Lloyd, AL;
(2014)
Seven challenges for modelling indirect transmission: Vector-borne diseases, macroparasites and neglected tropical diseases.
Epidemics, 10.
pp. 16-20.
ISSN 1755-4365
DOI: https://doi.org/10.1016/j.epidem.2014.08.007
Klepac, P;
Funk, S;
Hollingsworth, TD;
Metcalf, CJ;
Hampson, K;
(2014)
Six challenges in the eradication of infectious diseases.
Epidemics, 10.
pp. 97-101.
ISSN 1755-4365
DOI: https://doi.org/10.1016/j.epidem.2014.12.001
Lloyd-Smith, JO;
Funk, S;
McLean, AR;
Riley, S;
Wood, JL;
(2014)
Nine challenges in modelling the emergence of novel pathogens.
Epidemics, 10.
pp. 35-9.
ISSN 1755-4365
DOI: https://doi.org/10.1016/j.epidem.2014.09.002
Metcalf, CJ;
Andreasen, V;
Bjørnstad, ON;
Eames, K;
Edmunds, WJ;
Funk, S;
Hollingsworth, TD;
Lessler, J;
Viboud, C;
Grenfell, BT;
(2014)
Seven challenges in modeling vaccine preventable diseases.
Epidemics, 10.
pp. 11-5.
ISSN 1755-4365
DOI: https://doi.org/10.1016/j.epidem.2014.08.004
Metcalf, CJ;
Birger, RB;
Funk, S;
Kouyos, RD;
Lloyd-Smith, JO;
Jansen, VA;
(2014)
Five challenges in evolution and infectious diseases.
Epidemics, 10.
pp. 40-4.
ISSN 1755-4365
DOI: https://doi.org/10.1016/j.epidem.2014.12.003
2013
Funk, S;
Bogich, TL;
Jones, KE;
Kilpatrick, AM;
Daszak, P;
(2013)
Quantifying trends in disease impact to produce a consistent and reproducible definition of an emerging infectious disease.
PLoS One, 8 (8).
e69951.
ISSN 1932-6203
DOI: https://doi.org/10.1371/journal.pone.0069951