Beretta, M; Moreau, A; Bouvin-Pley, M; Essat, A; Goujard, C; Chaix, ML; Hue, S; Meyer, L; Barin, F; Braibant, M; +1 more... ANRS 06 Primo Cohort; (2018) Phenotypic properties of envelope glycoproteins of transmitted HIV-1 variants from patients belonging to transmission chains. AIDS (London, England). ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000001906 Item availability may be restricted.

Kucharski, AJ; Kama, M; Watson, CH; Aubry, M; Funk, S; Henderson, AD; Brady, OJ; Vanhomwegen, J; Manuguerra, JC; Lau, CL; +6 more... Edmunds, WJ; Aaskov, J; Nilles, EJ; Cao-Lormeau, VM; Hué, S; Hibberd, ML; (2018) Using paired serology and surveillance data to quantify dengue transmission and control during a large outbreak in Fiji. eLife, 7. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.34848

Levintow, SN; Okeke, NL; Hué, S; Mkumba, L; Virkud, A; Napravnik, S; Sebastian, J; Miller, WC; Eron, JJ; Dennis, AM; (2018) Prevalence and Transmission Dynamics of HIV-1 Transmitted Drug Resistance in a Southeastern Cohort. Open forum infectious diseases, 5 (8). ofy178. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofy178

Pasquale, DK; Doherty, IA; Sampson, LA; Hué, S; Leone, PA; Sebastian, J; Ledford, SL; Eron, JJ; Miller, WC; Dennis, AM; (2018) Leveraging Phylogenetics to Understand HIV Transmission and Partner Notification Networks. Journal of acquired immune deficiency syndromes (1999), 78 (4). pp. 367-375. ISSN 1525-4135 DOI: https://doi.org/10.1097/QAI.0000000000001695 Full text not available from this repository.

Ragonnet-Cronin, M; Hué, S; Hodcroft, EB; Tostevin, A; Dunn, D; Fawcett, T; Pozniak, A; Brown, AE; Delpech, V; Brown, AJL; +1 more... UK HIV Drug Resistance Database; (2018) Non-disclosed men who have sex with men in UK HIV transmission networks: phylogenetic analysis of surveillance data. The lancet HIV, 5 (6). e309-e316. ISSN 2405-4704 DOI: https://doi.org/10.1016/S2352-3018(18)30062-6 Full text not available from this repository.

de Silva, TI; Leligdowicz, A; Carlson, J; Garcia-Knight, M; Onyango, C; Miller, N; Yindom, LM; Hué, S; Jaye, A; Dong, T; +2 more... Cotten, M; Rowland-Jones, SL; (2018) HLA-associated polymorphisms in the HIV-2 capsid highlight key differences between HIV-1 and HIV-2 immune adaptation. AIDS (London, England). ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000001753 Item availability may be restricted.

Dennis, AM; Hue, S; Learner, E; Sebastian, J; Miller, WC; Eron, JJ; (2017) Rising prevalence of non-B HIV-1 subtypes in North Carolina and evidence for local onward transmission. Virus evolution, 3 (1). vex013. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vex013

Zhu, YO; Aw, PPK; de Sessions, PF; Hong, S; See, LX; Hong, LZ; Wilm, A; Li, CH; Hue, S; Lim, SG; +3 more... Nagarajan, N; Burkholder, WF; Hibberd, M; (2017) Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history. BMC genomics, 18 (1). p. 829. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4217-1

Ferns, RB; Tarr, AW; Hue, S; Urbanowicz, RA; McClure, CP; Gilson, R; Ball, JK; Nastouli, E; Garson, JA; Pillay, D; (2016) Hepatitis C virus quasispecies and pseudotype analysis from acute infection to chronicity in HIV-1 co-infected individuals. Virology, 492. pp. 213-24. ISSN 0042-6822 DOI: https://doi.org/10.1016/j.virol.2016.02.003 Full text not available from this repository.

Yakob, L; Kucharski, A; Hue, S; Edmunds, WJ; (2016) Low risk of a sexually-transmitted Zika virus outbreak. The Lancet infectious diseases, 16 (10). pp. 1100-2. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(16)30324-3 Full text not available from this repository.

Dennis, AM; Hue, S; Pasquale, D; Napravnik, S; Sebastian, J; Miller, WC; Eron, JJ; (2015) HIV Transmission Patterns among Immigrant Latinos Illuminated by the Integration of Phylogenetic and Migration Data. AIDS research and human retroviruses. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2015.0089 Full text not available from this repository.

Kayondo, JK; Ndembi, N; Parry, CM; Cane, PA; Hue, S; Goodall, R; Dunn, DT; Kaleebu, P; Pillay, D; Mbisa, JL; (2015) Intrapatient Evolutionary Dynamics of Human Immunodeficiency Virus Type 1 in Individuals Undergoing Alternative Treatment Strategies with Reverse Transcriptase Inhibitors. AIDS research and human retroviruses, 31 (7). pp. 749-56. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2015.0035 Full text not available from this repository.

Lange, CM; Hue, S; Violari, A; Cotton, M; Gibb, D; Babiker, A; Otwombe, K; Panchia, R; Dobbels, E; Jean-Philippe, P; +3 more... McIntyre, JA; Pillay, D; Gupta, RK; (2015) Single Genome Analysis for the Detection of Linked Multiclass Drug Resistance Mutations in HIV-1-Infected Children After Failure of Protease Inhibitor-Based First-Line Therapy. Journal of acquired immune deficiency syndromes (1999), 69 (2). pp. 138-44. ISSN 1525-4135 DOI: https://doi.org/10.1097/QAI.0000000000000568 Full text not available from this repository.

Monit, C; Goldstein, RA; Towers, G; Hue, S; (2015) Positive selection analysis of overlapping reading frames is invalid. AIDS research and human retroviruses. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2015.0150 Full text not available from this repository.

Mourad, R; Chevennet, F; Dunn, DT; Fearnhill, E; Delpech, V; Asboe, D; Gascuel, O; Hue, S; UK HIV Drug Resistance Database &, amp; the Collaborative HIV, Anti-HIV Drug Resistance Network; (2015) A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK. AIDS (London, England), 29 (15). pp. 1917-25. ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000000768 Full text not available from this repository.

Ragonnet-Cronin, M; Lycett, SJ; Hodcroft, EB; Hue, S; Fearnhill, E; Brown, AE; Delpech, V; Dunn, D; Brown, AJL; United Kingdom, HIVDR; (2015) Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters. The Journal of infectious diseases, 213 (9). pp. 1410-1418. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiv758

Berger, G; Lawrence, M; Hue, S; Neil, SJ; (2014) G2/M cell cycle arrest correlates with primate lentiviral Vpr interaction with the SLX4 complex. Journal of virology, 89 (1). pp. 230-40. ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.02307-14 Full text not available from this repository.

Foster, GM; Ambrose, JC; Hue, S; Delpech, VC; Fearnhill, E; Abecasis, AB; Leigh Brown, AJ; Geretti, AM; UK HIV Drug Resistance Database; , COLLABORATORS; +33 more... Aitken, C; Asboe, D; Pozniak, A; Webster, D; Castro, H; Dunn, D; Dolling, D; Chadwick, D; Churchill, D; Clark, D; Collins, S; Delpech, V; Geretti, AM; Goldberg, D; Hale, A; Hué, S; Kaye, S; Kellam, P; Lazarus, L; Leigh-Brown, A; Mackie, N; Orkin, C; Rice, P; Pillay, D; Phillips, A; Sabin, C; Smit, E; Templeton, K; Tilston, P; Tong, W; Williams, I; Zhang, H; Zuckerman, M; (2014) Novel HIV-1 recombinants spreading across multiple risk groups in the United Kingdom: the identification and phylogeography of Circulating Recombinant Form (CRF) 50_A1D. PloS one, 9 (1). e83337. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0083337

Hué, S; Brown, AE; Ragonnet-Cronin, M; Lycett, SJ; Dunn, DT; Fearnhill, E; Dolling, DI; Pozniak, A; Pillay, D; Delpech, VC; +74 more... Leigh Brown, AJ; UK Collaboration on HIV Drug Resistance and the Collaborative HI; , COLLABORATORS; Aitken, C; Asboe, D; Pozniak, A; Webster, D; Cane, P; Castro, H; Dunn, D; Dolling, D; Fearnhill, E; Porter, K; Chadwick, D; Churchill, D; Clark, D; Collins, S; Delpech, V; Geretti, AM; Goldberg, D; Hale, A; Hué, S; Kaye, S; Kellam, P; Lazarus, L; Leigh-Brown, A; Mackie, N; Orkin, C; Rice, P; Pillay, D; Phillips, A; Sabin, C; Smit, E; Templeton, K; Tilston, P; Tong, W; Thomas, S; Williams, I; Zhang, H; Zuckerman, M; Greatorex, J; Wildfire, A; O'Shea, S; Mullen, J; Smit, E; Mbisa, T; Cox, A; Tandy, R; Hale, T; Fawcett, T; Hopkins, M; Ashton, L; Tilston, P; Webster, D; Garcia-Diaz, A; Shepherd, J; Schmid, ML; Payne, B; Chadwick, D; Hay, P; Rice, P; Paynter, M; Clark, D; Bibby, D; Kaye, S; Kirk, S; MacLean, A; Aitken, C; Gunson, R; Coughlin, K; Dolling, D; Dunn, D; Fearnhill, E; Porter, K; (2014) Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions. AIDS (London, England), 28 (13). pp. 1967-75. ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000000383 Full text not available from this repository.

Pickering, S; Hue, S; Kim, EY; Reddy, S; Wolinsky, SM; Neil, SJ; (2014) Preservation of tetherin and CD4 counter-activities in circulating Vpu alleles despite extensive sequence variation within HIV-1 infected individuals. PLoS pathogens, 10 (1). e1003895. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1003895

Schaller, T; Bauby, H; Hue, S; Malim, MH; Goujon, C; (2014) New insights into an X-traordinary viral protein. Frontiers in microbiology, 5. p. 126. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2014.00126

Sutherland, KA; Mbisa, JL; Ghosn, J; Chaix, ML; Cohen-Codar, I; Hue, S; Delfraissy, JF; Delaugerre, C; Gupta, RK; (2014) Phenotypic characterization of virological failure following lopinavir/ritonavir monotherapy using full-length Gag-protease genes. The Journal of antimicrobial chemotherapy, 69 (12). pp. 3340-8. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dku296 Full text not available from this repository.