Shrestha, D; Shrestha, MK; Raya, GB; Bhattachan, A; Hayashi, K; Ariyoshi, K; Parry, CM; Dhoubhadel, BG; (2017) A 14-year-old girl presenting with tuberculous intestinal perforation while in a temporary shelter after the 2015 earthquake in Nepal. Paediatrics and international child health. pp. 1-4. ISSN 2046-9047 DOI: https://doi.org/10.1080/20469047.2016.1265233 Full text not available from this repository.

Zabihullah, R; Dhoubhadel, BG; Rauf, FA; Shafiq, SA; Suzuki, M; Watanabe, K; Yoshida, LM; Yasunami, M; Zabihullah, S; Parry, CM; +2 more... Mirwais, R; Ariyoshi, K; (2017) Risk for Death among Children with Pneumonia, Afghanistan. Emerging infectious diseases, 23 (8). pp. 1404-1408. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2308.151550

de Jong, HK; Garcia-Laorden, MI; Hoogendijk, AJ; Parry, CM; Maude, RR; Dondorp, AM; Faiz, MA; van der Poll, T; Wiersinga, WJ; (2017) Expression of intra- and extracellular granzymes in patients with typhoid fever. PLoS neglected tropical diseases, 11 (7). e0005823. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005823

Feasey, NA; Hadfield, J; Keddy, KH; Dallman, TJ; Jacobs, J; Deng, X; Wigley, P; Barquist Barquist, L; Langridge, GC; Feltwell, T; +37 more... Harris, SR; Mather, AE; Fookes, M; Aslett, M; Msefula, C; Kariuki, S; Maclennan, CA; Onsare, RS; Weill, FX; Le Hello, S; Smith, AM; McClelland, M; Desai, P; Parry, CM; Cheesbrough, J; French, N; Campos, J; Chabalgoity, JA; Betancor, L; Hopkins, KL; Nair, S; Humphrey, TJ; Lunguya, O; Cogan, TA; Tapia, MD; Sow, SO; Tennant, SM; Bornstein, K; Levine, MM; Lacharme-Lora, L; Everett, DB; Kingsley, RA; Parkhill, J; Heyderman, RS; Dougan, G; Gordon, MA; Thomson, NR; (2016) Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings. Nature genetics. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3644

Maude, RR; Ghose, A; Samad, R; de Jong, HK; Fukushima, M; Wijedoru, L; Hassan, MU; Hossain, MA; Karim, MR; Sayeed, AA; +19 more... van den Ende, S; Pal, S; Zahed, AS; Rahman, W; Karnain, R; Islam, R; Tran, DT; Ha, TT; Pham, AH; Campbell, JI; van Doorn, HR; Maude, RJ; van der Poll, T; Wiersinga, WJ; Day, NP; Baker, S; Dondorp, AM; Parry, CM; Faiz, MA; (2016) A prospective study of the importance of enteric fever as a cause of non-malarial febrile illness in patients admitted to Chittagong Medical College Hospital, Bangladesh. BMC infectious diseases, 16 (1). p. 567. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-016-1886-3

Moore, CE; Elwin, K; Phot, N; Seng, C; Mao, S; Suy, K; Kumar, V; Nader, J; Bousfield, R; Perera, S; +5 more... Bailey, JW; Beeching, NJ; Day, NP; Parry, CM; Chalmers, RM; (2016) Molecular Characterization of Cryptosporidium Species and Giardia duodenalis from Symptomatic Cambodian Children. PLoS neglected tropical diseases, 10 (7). e0004822. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004822

Moore, CE; Giess, A; Soeng, S; Sar, P; Kumar, V; Nhoung, P; Bousfield, R; Turner, P; Stoesser, N; Day, NP; +1 more... Parry, CM; (2016) Characterisation of Invasive Streptococcus pneumoniae Isolated from Cambodian Children between 2007 - 2012. PloS one, 11 (7). e0159358. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0159358

Pham Thanh, D; Karkey, A; Dongol, S; Ho Thi, N; Thompson, CN; Rabaa, MA; Arjyal, A; Holt, KE; Wong, V; Tran Vu Thieu, N; +13 more... Voong Vinh, P; Ha Thanh, T; Pradhan, A; Shrestha, SK; Gajurel, D; Pickard, D; Parry, CM; Dougan, G; Wolbers, M; Dolecek, C; Thwaites, GE; Basnyat, B; Baker, S; (2016) A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure. eLife, 5. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.14003

Pham Thanh, D; Thompson, CN; Rabaa, MA; Sona, S; Sopheary, S; Kumar, V; Moore, C; Tran Vu Thieu, N; Wijedoru, L; Holt, KE; +8 more... Wong, V; Pickard, D; Thwaites, GE; Day, N; Dougan, G; Turner, P; Parry, CM; Baker, S; (2016) The Molecular and Spatial Epidemiology of Typhoid Fever in Rural Cambodia. PLoS neglected tropical diseases, 10 (6). e0004785. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004785

Salome, T; Kasamba, I; Mayanja, BN; Kazooba, P; Were, J; Kaleebu, P; Munderi, P; CoLTART study team; , COLLABORATORS; Mayanja, B; +60 more... Nalwadda, J; Nakibuuka, G; Namugenyi, H; Kazooba, P; Lubega, R; Mugisha, A; Tereka, A; Kalyebara, A; Namara, A; Nakitto, D; Wangi, D; Nume, F; Ssemwanga, G; Nabulime, G; Nassuna, G; Lubega, G; Namakoola, I; Lutaakome, J; Generous, L; Matama, L; Massa, R; Tino, S; Nakahima, W; Kapaata, A; Magambo, B; Parry, C; Lyagoba, F; Nazziwa, J; Nannyonjo, M; Muhigirwa, E; Wamalugu, F; Kabajuma, F; Nakazibwe, H; Were, J; Bwandinga, J; Bukenya, J; Kamushaaga, M; Hughes, P; Nkurunziza, P; Balungi, P; Mukasa, S; Nassimbwa, S; Vudriko, T; Senyonga, W; Ochola, W; Nakimbugwe, A; Nampewo, C; Nambuba, D; Naphtali, E; Barigye, G; Nakamanya, I; Kasamba, I; Levin, J; Kahwa, J; Matovu, J; Namayirira, L; Lubega, R; Nabalayo, S; Kaddu, S; Munderi, P; (2016) The effect of Tenofovir on renal function among Ugandan adults on long-term antiretroviral therapy: a cross-sectional enrolment analysis. AIDS research and therapy, 13 (1). p. 28. ISSN 1742-6405 DOI: https://doi.org/10.1186/s12981-016-0113-z

Young, B; Zhao, X; Cook, AR; Parry, CM; Wilder-Smith, A; I-Cheng, MC; (2016) Do antibody responses to the influenza vaccine persist year-round in the elderly? A systematic review and meta-analysis. Vaccine, 35 (2). pp. 212-221. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.11.013

Crump, JA; Sjölund-Karlsson, M; Gordon, MA; Parry, CM; (2015) Epidemiology, Clinical Presentation, Laboratory Diagnosis, Antimicrobial Resistance, and Antimicrobial Management of Invasive Salmonella Infections. Clinical microbiology reviews, 28 (4). pp. 901-37. ISSN 0893-8512 DOI: https://doi.org/10.1128/CMR.00002-15 Full text not available from this repository.

Hamaguchi, S; Cuong, NC; Tra, DT; Doan, YH; Shimizu, K; Tuan, NQ; Yoshida, LM; Mai, LQ; Duc-Anh, D; Ando, S; +4 more... Arikawa, J; Parry, CM; Ariyoshi, K; Thuy, PT; (2015) Clinical and Epidemiological Characteristics of Scrub Typhus and Murine Typhus Among Hospitalized Patients with Acute Undifferentiated Fever in Northern Vietnam. The American journal of tropical medicine and hygiene. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.14-0806

Kaleebu, P; Kirungi, W; Watera, C; Asio, J; Lyagoba, F; Lutalo, T; Kapaata, AA; Nanyonga, F; Parry, CM; Magambo, B; +10 more... Nazziwa, J; Nannyonjo, M; Hughes, P; Hladik, W; Ruberantwari, A; Namuwenge, N; Musinguzi, J; Downing, R; Katongole-Mbidde, E; HIV Drug Resistance Working group; (2015) Virological Response and Antiretroviral Drug Resistance Emerging during Antiretroviral Therapy at Three Treatment Centers in Uganda. PloS one, 10 (12). e0145536. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0145536

Kariuki, S; Gordon, MA; Feasey, N; Parry, CM; (2015) Antimicrobial resistance and management of invasive Salmonella disease. Vaccine. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2015.03.102 Full text not available from this repository.

Kayondo, JK; Ndembi, N; Parry, CM; Cane, PA; Hue, S; Goodall, R; Dunn, DT; Kaleebu, P; Pillay, D; Mbisa, JL; (2015) Intrapatient Evolutionary Dynamics of Human Immunodeficiency Virus Type 1 in Individuals Undergoing Alternative Treatment Strategies with Reverse Transcriptase Inhibitors. AIDS research and human retroviruses, 31 (7). pp. 749-56. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2015.0035 Full text not available from this repository.

Kitashoji, E; Koizumi, N; Lacuesta, TL; Usuda, D; Ribo, MR; Tria, ES; Go, WS; Kojiro, M; Parry, CM; Dimaano, EM; +4 more... Villarama, JB; Ohnishi, M; Suzuki, M; Ariyoshi, K; (2015) Diagnostic Accuracy of Recombinant Immunoglobulin-like Protein A-Based IgM ELISA for the Early Diagnosis of Leptospirosis in the Philippines. PLoS neglected tropical diseases, 9 (6). e0003879. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0003879

Kumar, N; Miyajima, F; He, M; Roberts, P; Swale, A; Ellison, L; Pickard, D; Smith, G; Molyneux, R; Dougan, G; +5 more... Parkhill, J; Wren, BW; Parry, CM; Pirmohamed, M; Lawley, TD; (2015) Genome-based infection tracking reveals dynamics of Clostridium difficile transmission and disease recurrence. Clinical infectious diseases. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/civ1031

Maude, RR; de Jong, HK; Wijedoru, L; Fukushima, M; Ghose, A; Samad, R; Hossain, MA; Karim, MR; Faiz, MA; Parry, CM; +1 more... CMCH Typhoid Study Group; (2015) The diagnostic accuracy of three rapid diagnostic tests for typhoid fever at Chittagong Medical College Hospital, Chittagong, Bangladesh. Tropical medicine & international health. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12559

Parry, CM; Thieu, NT; Dolecek, C; Karkey, A; Gupta, R; Turner, P; Dance, D; Maude, RR; Ha, V; Tran, CN; +25 more... Thi, PL; Be, BP; Phi, LT; Ngoc, RN; Ghose, A; Dongol, S; Campbell, JI; Thanh, DP; Thanh, TH; Moore, CE; Sona, S; Gaind, R; Deb, M; Anh, HV; Van, SN; Tinh, HT; Day, NP; Dondorp, A; Thwaites, G; Faiz, MA; Phetsouvanh, R; Newton, P; Basnyat, B; Farrar, JJ; Baker, S; (2015) Erratum for Parry et al., Clinically and Microbiologically Derived Azithromycin Susceptibility Breakpoints for Salmonella enterica Serovars Typhi and Paratyphi A. Antimicrobial agents and chemotherapy, 59 (7). p. 4364. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.01014-15 Full text not available from this repository.

Parry, CM; Thieu, NT; Dolecek, C; Karkey, A; Gupta, R; Turner, P; Dance, D; Maude, RR; Ha, V; Tran, CN; +25 more... Thi, PL; Be, BP; Phi, LT; Ngoc, RN; Ghose, A; Dongol, S; Campbell, JI; Thanh, DP; Thanh, TH; Moore, CE; Sona, S; Gaind, R; Deb, M; Anh, HV; Van, SN; Tinh, HT; Day, NP; Dondorp, A; Thwaites, G; Faiz, MA; Phetsouvanh, R; Newton, P; Basnyat, B; Farrar, JJ; Baker, S; (2015) Clinically and microbiologically derived azithromycin susceptibility breakpoints for Salmonella enterica serovars Typhi and Paratyphi A. Antimicrobial agents and chemotherapy, 59 (5). pp. 2756-64. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.04729-14

Stoesser, N; Sheppard, AE; Moore, CE; Golubchik, T; Parry, CM; Nget, P; Saroeun, M; Day, NP; Giess, A; Johnson, JR; +4 more... Peto, TE; Crook, DW; Walker, AS; Modernizing Medical Microbiology (MMM) informatics group; (2015) Extensive within-host diversity in fecally carried extended-spectrum beta-lactamase-producing Escherichia coli: implications for transmission analyses. Journal of clinical microbiology. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.00378-15

Thompson, CN; Thieu, NT; Vinh, PV; Duc, AN; Wolbers, M; Vinh, H; Campbell, JI; Ngoc, DT; Hoang, NV; Thanh, TH; +8 more... The, HC; Nguyen, TN; Lan, NP; Parry, CM; Chau, NV; Thwaites, G; Thanh, DP; Baker, S; (2015) Clinical implications of reduced susceptibility to fluoroquinolones in paediatric Shigella sonnei and Shigella flexneri infections. The Journal of antimicrobial chemotherapy. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkv400

Wong, VK; Baker, S; Pickard, DJ; Parkhill, J; Page, AJ; Feasey, NA; Kingsley, RA; Thomson, NR; Keane, JA; Weill, FX; +64 more... Edwards, DJ; Hawkey, J; Harris, SR; Mather, AE; Cain, AK; Hadfield, J; Hart, PJ; Thieu, NT; Klemm, EJ; Glinos, DA; Breiman, RF; Watson, CH; Kariuki, S; Gordon, MA; Heyderman, RS; Okoro, C; Jacobs, J; Lunguya, O; Edmunds, WJ; Msefula, C; Chabalgoity, JA; Kama, M; Jenkins, K; Dutta, S; Marks, F; Campos, J; Thompson, C; Obaro, S; MacLennan, CA; Dolecek, C; Keddy, KH; Smith, AM; Parry, CM; Karkey, A; Mulholland, EK; Campbell, JI; Dongol, S; Basnyat, B; Dufour, M; Bandaranayake, D; Naseri, TT; Singh, SP; Hatta, M; Newton, P; Onsare, RS; Isaia, L; Dance, D; Davong, V; Thwaites, G; Wijedoru, L; Crump, JA; De Pinna, E; Nair, S; Nilles, EJ; Thanh, DP; Turner, P; Soeng, S; Valcanis, M; Powling, J; Dimovski, K; Hogg, G; Farrar, J; Holt, KE; Dougan, G; (2015) Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. Nature genetics, 47 (6). pp. 632-9. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3281 Full text not available from this repository.

Ba-Saddik, IA; Munibari, AA; Alhilali, AM; Ismail, SM; Murshed, FM; Coulter, JB; Cuevas, LE; Hart, CA; Brabin, BJ; Parry, CM; (2014) Prevalence of Group A beta-haemolytic Streptococcus isolated from children with acute pharyngotonsillitis in Aden, Yemen. Tropical medicine & international health, 19 (4). pp. 431-9. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12264 Full text not available from this repository.

Emary, KR; Carter, MJ; Pol, S; Sona, S; Kumar, V; Day, NP; Parry, CM; Moore, CE; (2014) Urinary antibiotic activity in paediatric patients attending an outpatient department in north-western Cambodia. Tropical medicine & international health, 20 (1). pp. 24-8. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12398

Lam, PK; Trieu, HT; Lubis, IN; Loan, HT; Thuy, TT; Wills, B; Parry, CM; Day, NP; Qui, PT; Yen, LM; +1 more... Thwaites, CL; (2014) Prognosis of neonatal tetanus in the modern management era: an observational study in 107 Vietnamese infants. International journal of infectious diseases, 33. pp. 7-11. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2014.12.011

Pocock, JM; Khun, PA; Moore, CE; Vuthy, S; Stoesser, N; Parry, CM; (2014) Septic arthritis of the hip in a Cambodian child caused by multidrug-resistant Salmonella enterica serovar Typhi with intermediate susceptibility to ciprofloxacin treated with ceftriaxone and azithromycin. Paediatrics and international child health, 34 (3). pp. 227-9. ISSN 2046-9047 DOI: https://doi.org/10.1179/2046905514Y.0000000123 Full text not available from this repository.

Swale, A; Miyajima, F; Roberts, P; Hall, A; Little, M; Beadsworth, MB; Beeching, NJ; Kolamunnage-Dona, R; Parry, CM; Pirmohamed, M; (2014) Calprotectin and lactoferrin faecal levels in patients with Clostridium difficile infection (CDI): a prospective cohort study. PloS one, 9 (8). e106118. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0106118

Cornick, JE; Harris, SR; Parry, CM; Moore, MJ; Jassi, C; Kamng'ona, A; Kulohoma, B; Heyderman, RS; Bentley, SD; Everett, DB; (2013) Genomic identification of a novel co-trimoxazole resistance genotype and its prevalence amongst Streptococcus pneumoniae in Malawi. The Journal of antimicrobial chemotherapy, 69 (2). pp. 368-74. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkt384

Lawson, L; Emenyonu, N; Abdurrahman, ST; Lawson, JO; Uzoewulu, GN; Sogaolu, OM; Ebisike, JN; Parry, CM; Yassin, MA; Cuevas, LE; (2013) Comparison of Mycobacterium tuberculosis drug susceptibility using solid and liquid culture in Nigeria. BMC research notes, 6. p. 215. ISSN 1756-0500 DOI: https://doi.org/10.1186/1756-0500-6-215

Owusu-Ofori, AK; Betson, M; Parry, CM; Stothard, JR; Bates, I; (2013) Transfusion-transmitted malaria in Ghana. Clinical infectious diseases, 56 (12). pp. 1735-41. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cit130 Full text not available from this repository.

Ssemwanga, D; Kapaata, A; Lyagoba, F; Magambo, B; Nanyonjo, M; Mayanja, BN; Parry, CM; Kaleebu, P; (2012) Low drug resistance levels among drug-naive individuals with recent HIV type 1 infection in a rural clinical cohort in southwestern Uganda. AIDS research and human retroviruses, 28 (12). pp. 1784-7. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2012.0090 Full text not available from this repository.