Items where Research Centre is "Centre for the Mathematical Modelling of Infectious Diseases"
Research Centres (26996)
Centre for the Mathematical Modelling of Infectious Diseases (1222)
Number of items: 106.
December 2023
Childhood and adolescent factors shaping vulnerability to underage entry into sex work: a quantitative hierarchical analysis of female sex workers in Nairobi, Kenya. (2023)
Shah, Pooja; Kabuti, Rhoda; Beksinska, Alicja; Nyariki, Emily; Babu, Hellen; Kungu, Mary; Jama, Zaina; Ngurukiri, Pauline; Maisha Fiti Study Champions; Kaul, Rupert; Kyegombe, Nambusi; Medley, Graham F; Devries, Karen; Seeley, Janet; Weiss, Helen Anne; Beattie, Tara S; Kimani, Joshua
Interactions between climate change, urban infrastructure and mobility are driving dengue emergence in Vietnam. (2023)
Gibb, Rory; Colón-González, Felipe J; Lan, Phan Trong; Huong, Phan Thi; Nam, Vu Sinh; Duoc, Vu Trong; Hung, Do Thai; Dong, Nguyễn Thanh; Chien, Vien Chinh; Trang, Ly Thi Thuy; Kien Quoc, Do; Hoa, Tran Minh; Tai, Nguyen Hữu; Hang, Tran Thi; Tsarouchi, Gina; Ainscoe, Eleanor; Harpham, Quillon; Hofmann, Barbara; Lumbroso, Darren; Brady, Oliver J; Lowe, Rachel
Implementing Germ Defence digital behaviour change intervention via all primary care practices in England to reduce respiratory infections during the COVID-19 pandemic: an efficient cluster randomised controlled trial using the OpenSAFELY platform. (2023)
Ainsworth, Ben; Horwood, Jeremy; Walter, Scott R; Miller, Sascha; Chalder, Melanie; De Vocht, Frank; Denison-Day, James; Elwenspoek, Martha MC; Curtis, Helen J; Bates, Chris; Mehrkar, Amir; Bacon, Seb; Goldacre, Ben; OpenSAFELY Collaborative; Craggs, Pippa; Amlôt, Richard; Francis, Nick; Little, Paul; Macleod, John; Moore, Michael; Morton, Kate; Rice, Cathy; Sterne, Jonathan; Stuart, Beth; Towler, Lauren; Willcox, Merlin L; Yardley, Lucy
A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk. (2023)
Lim, Ah-Young; Jafari, Yalda; Caldwell, Jamie M; Clapham, Hannah E; Gaythorpe, Katy AM; Hussain-Alkhateeb, Laith; Johansson, Michael A; Kraemer, Moritz UG; Maude, Richard J; McCormack, Clare P; Messina, Jane P; Mordecai, Erin A; Rabe, Ingrid B; Reiner, Robert C; Ryan, Sadie J; Salje, Henrik; Semenza, Jan C; Rojas, Diana P; Brady, Oliver J
Estimating the contribution of subclinical tuberculosis disease to transmission: An individual patient data analysis from prevalence surveys. (2023)
Emery, Jon C; Dodd, Peter J; Banu, Sayera; Frascella, Beatrice; Garden, Frances L; Horton, Katherine C; Hossain, Shahed; Law, Irwin; van Leth, Frank; Marks, Guy B; Nguyen, Hoa Binh; Nguyen, Hai Viet; Onozaki, Ikushi; Quelapio, Maria Imelda D; Richards, Alexandra S; Shaikh, Nabila; Tiemersma, Edine W; White, Richard G; Zaman, Khalequ; Cobelens, Frank; Houben, Rein MGJ
AHHME: A model for estimating the holistic cost-effectiveness of antimicrobial resistance interventions in food animal production. (2023)
Emes, Eve T; Waage, Jeff; Knight, Gwenan M; Naylor, Nichola R
Why local antibiotic resistance data matters - Informing empiric prescribing through local data collation, app design and engagement in Zambia. (2023)
Fwoloshi, Sombo; Chola, Uchizi; Nakazwe, Ruth; Tatila, Timothy; Mateele, Tebuho; Kabaso, Mwewa; Muzyamba, Theresa; Mutwale, Ilunga; Jones, Anja St Clair; Islam, Jasmin; Chikatula, Enock; Mweemba, Aggrey; Mbewe, Wilson; Mulenga, Lloyd; Aiken, Alexander M; Anitha Menon, J; Bailey, Sarah Lou; Knight, Gwenan M
Diversity of symptom phenotypes in SARS-CoV-2 community infections observed in multiple large datasets. (2023)
Fyles, Martyn; Vihta, Karina-Doris; Sudre, Carole H; Long, Harry; Das, Rajenki; Jay, Caroline; Wingfield, Tom; Cumming, Fergus; Green, William; Hadjipantelis, Pantelis; Kirk, Joni; Steves, Claire J; Ourselin, Sebastien; Medley, Graham F; Fearon, Elizabeth; House, Thomas
Adding new childhood vaccines to China's National Immunization Program: evidence, benefits, and priorities. (2023)
Zhang, Haijun; Lai, Xiaozhen; Patenaude, Bryan N; Jit, Mark; Fang, Hai
November 2023
Guiding pragmatic treatment choices for rifampicin-resistant tuberculosis in the absence of second-line drug susceptibility testing. (2023)
Achar, Jay; Seddon, James A; Knight, Gwenan M; Dodd, Peter J; Esmail, Hanif; Hughes, Jennifer; McQuaid, C Finn
Malnutrition in older adults: a wider view. (2023)
McQuaid, Christopher Finn; Bhargava, Madhavi; Sinha, Pranay; Bhargava, Anurag; Houben, Rein MGJ
description
The 2023 UN high-level meeting on tuberculosis: renewing hope, momentum, and commitment to end tuberculosis. (2023)
Millington, Kerry A; White, Richard G; Lipman, Marc; McQuaid, C Finn; Hauser, Janika; Wooding, Vincent; Potter, Jessica; Abubakar, Ibrahim; Wingfield, Tom
Vaccine value profile for Chikungunya. (2023)
Flandes, Ximena; Hansen, Clairissa A; Palani, Sunil; Abbas, Kaja; Bennett, Cate; Caro, William Perea; Hutubessy, Raymond; Khazhidinov, Kanat; Lambach, Philipp; Maure, Clara; Marshall, Caroline; Rojas, Diana P; Rosewell, Alexander; Sahastrabuddhe, Sushant; Tufet, Marta; Wilder-Smith, Annelies; Beasley, David WC; Bourne, Nigel; Barrett, Alan DT
Supply-side factors influencing demand for facility-based delivery in Tanzania: a multilevel analysis. (2023)
Binyaruka, Peter; Foss, Anna; Alibrahim, Abdullah; Mziray, Nicholaus; Cassidy, Rachel; Borghi, Josephine
"We usually see a lot of delay in terms of coming for or seeking care": an expert consultation on COVID testing and care pathways in seven low- and middle-income countries. (2023)
Bonnet, Gabrielle; Bimba, John; Chavula, Chancy; Chifamba, Harunavamwe N; Divala, Titus; Lescano, Andres G; Majam, Mohammed; Mbo, Danjuma; Suwantika, Auliya A; Tovar, Marco A; Yadav, Pragya; Corbett, Elisabeth L; Vassall, Anna; Jit, Mark
Why are different estimates of the effective reproductive number so different? A case study on COVID-19 in Germany. (2023)
Brockhaus, Elisabeth K; Wolffram, Daniel; Stadler, Tanja; Osthege, Michael; Mitra, Tanmay; Littek, Jonas M; Krymova, Ekaterina; Klesen, Anna J; Huisman, Jana S; Heyder, Stefan; Helleckes, Laura M; An der Heiden, Matthias; Funk, Sebastian; Abbott, Sam; Bracher, Johannes
Impact and cost-effectiveness of measles vaccination through microarray patches in 70 low-income and middle-income countries: mathematical modelling and early-stage economic evaluation. (2023)
Fu, Han; Abbas, Kaja; Malvolti, Stefano; Gregory, Christopher; Ko, Melissa; Amorij, Jean-Pierre; Jit, Mark
Transplacental transfer efficiency of maternal antibodies against influenza A(H1N1)pdm09 virus and dynamics of naturally acquired antibodies in Chinese children: a longitudinal, paired mother-neonate cohort study. (2023)
Li, Mei; Wang, Wei; Chen, Junbo; Zhan, Zhifei; Xu, Meng; Liu, Nuolan; Ren, Lingshuang; You, Lei; Zheng, Wen; Shi, Huilin; Zhao, Zeyao; Huang, Chaoyang; Chen, Xinhua; Zheng, Nan; Lu, Wanying; Zhou, Xiaoyu; Zhou, Jiaxin; Liao, Qiaohong; Yang, Juan; Jit, Mark; Salje, Henrik; Yu, Hongjie
A mathematical model of Marburg virus disease outbreaks and the potential role of vaccination in control. (2023)
Qian, George Y; Edmunds, W John; Bausch, Daniel G; Jombart, Thibaut
Transient increased risk of influenza infection following RSV infection in South Africa: findings from the PHIRST study, South Africa, 2016-2018. (2023)
Waterlow, Naomi R; Kleynhans, Jackie; Wolter, Nicole; Tempia, Stefano; Eggo, Rosalind M; Hellferscee, Orienka; Lebina, Limakatso; Martinson, Neil; Wagner, Ryan G; Moyes, Jocelyn; von Gottberg, Anne; Cohen, Cheryl; Flasche, Stefan
October 2023
A Scoping Review and Taxonomy of Epidemiological-Macroeconomic Models of COVID-19. (2023)
Bonnet, Gabrielle; Pearson, Carl AB; Torres-Rueda, Sergio; Ruiz, Francis; Lines, Jo; Jit, Mark; Vassall, Anna; Sweeney, Sedona
The full health, economic, and social benefits of prospective Strep A vaccination. (2023)
Cadarette, Daniel; Ferranna, Maddalena; Cannon, Jeffrey W; Abbas, Kaja; Giannini, Fiona; Zucker, Leo; Bloom, David E
The burden and dynamics of hospital-acquired SARS-CoV-2 in England. (2023)
Cooper, Ben S; Evans, Stephanie; Jafari, Yalda; Pham, Thi Mui; Mo, Yin; Lim, Cherry; Pritchard, Mark G; Pople, Diane; Hall, Victoria; Stimson, James; Eyre, David W; Read, Jonathan M; Donnelly, Christl A; Horby, Peter; Watson, Conall; Funk, Sebastian; Robotham, Julie V; Knight, Gwenan M
Comparative effectiveness of nirmatrelvir/ritonavir versus sotrovimab and molnupiravir for preventing severe COVID-19 outcomes in non-hospitalised high-risk patients during Omicron waves: observational cohort study using the OpenSAFELY platform. (2023)
Zheng, Bang; Tazare, John; Nab, Linda; Green, Amelia Ca; Curtis, Helen J; Mahalingasivam, Viyaasan; Herrett, Emily L; Costello, Ruth E; Eggo, Rosalind M; Speed, Victoria; Bacon, Sebastian Cj; Bates, Christopher; Parry, John; Cockburn, Jonathan; Hester, Frank; Harper, Sam; Schaffer, Andrea L; Hulme, William J; Mehrkar, Amir; Evans, Stephen Jw; MacKenna, Brian; Goldacre, Ben; Douglas, Ian J; Tomlinson, Laurie A; OpenSAFELY Collaborative
Application of pathogen genomics to infer the transmission direction of respiratory infection. (2023)
Hackman, JN
A modelling analysis of a new multi-stage pathway for classifying achievement of public health milestones for leprosy. (2023)
Davis, Emma L; Crump, Ron E; Medley, Graham F; Solomon, Anthony W; Pemmaraju, Venkata Ranganadha Rao; Hollingsworth, T Déirdre
September 2023
Projecting the future incidence and burden of dengue in Southeast Asia. (2023)
Colón-González, Felipe J; Gibb, Rory; Khan, Kamran; Watts, Alexander; Lowe, Rachel; Brady, Oliver J
Comparison of collection methods for Phlebotomus argentipes sand flies to use in a molecular xenomonitoring system for the surveillance of visceral leishmaniasis. (2023)
McIntyre-Nolan, Shannon; Kumar, Vijay; Mark-Carew, Miguella; Kumar, Kundan; Nightingale, Emily S; Dalla Libera Marchiori, Giorgia; Rogers, Matthew E; Kristan, Mojca; Campino, Susana; Medley, Graham F; Das, Pradeep; Cameron, Mary M
A systematic review of the cost-effectiveness of interventions to increase cervical cancer screening among underserved women in Europe. (2023)
Sun, Li; Patel, Shruti; Fiorina, Camilla; Glass, Audrey; Rochaix, Lise; CBIG-SCREEN Consortium; Foss, Anna M; Legood, Rosa
August 2023
Associations of water, sanitation, and hygiene with typhoid fever in case-control studies: a systematic review and meta-analysis. (2023)
Kim, Chaelin; Goucher, Gerard R; Tadesse, Birkneh Tilahun; Lee, Woojoo; Abbas, Kaja; Kim, Jong-Hoon
Global impact and cost-effectiveness of one-dose versus two-dose human papillomavirus vaccination schedules: a comparative modelling analysis. (2023)
Prem, Kiesha; Choi, Yoon Hong; Bénard, Élodie; Burger, Emily A; Hadley, Liza; Laprise, Jean-François; Regan, Mary Caroline; Drolet, Mélanie; Sy, Stephen; Abbas, Kaja; Portnoy, Allison; Kim, Jane J; Brisson, Marc; Jit, Mark
The potential global cost-effectiveness of prospective Strep A vaccines and associated implementation efforts. (2023)
Lee, Jung-Seok; Mogasale, Vittal; Kim, Sol; Cannon, Jeffrey; Giannini, Fiona; Abbas, Kaja; Excler, Jean-Louis; Kim, Jerome H
Seasonality of acute kidney injury phenotypes in England: an unsupervised machine learning classification study of electronic health records. (2023)
Bolt, Hikaru; Suffel, Anne; Matthewman, Julian; Sandmann, Frank; Tomlinson, Laurie; Eggo, Rosalind
Is neglect of self-clearance biasing TB vaccine impact estimates? (2023)
Scarponi, Danny; Clark, Rebecca A; Weerasuriya, Chathika Krishan; Emery, Jon; Houben, Rein MGJ; White, Richard; McCreesh, Nicky
New tuberculosis vaccines in India: modelling the potential health and economic impacts of adolescent/adult vaccination with M72/AS01E and BCG-revaccination. (2023)
Clark, Rebecca A; Weerasuriya, Chathika K; Portnoy, Allison; Mukandavire, Christinah; Quaife, Matthew; Bakker, Roel; Scarponi, Danny; Harris, Rebecca C; Rade, Kirankumar; Mattoo, Sanjay Kumar; Tumu, Dheeraj; Menzies, Nicolas A; White, Richard G
Defining a research agenda for environmental wastewater surveillance of pathogens. (2023)
Shaw, Alexander G; Troman, Catherine; Akello, Joyce Odeke; O'Reilly, Kathleen M; Gauld, Jillian; Grow, Stephanie; Grassly, Nicholas; Steele, Duncan; Blazes, David; Kumar, Supriya; Environmental Surveillance Working Group
Health effects of routine measles vaccination and supplementary immunisation activities in 14 high-burden countries: a Dynamic Measles Immunization Calculation Engine (DynaMICE) modelling study. (2023)
Auzenbergs, Megan; Fu, Han; Abbas, Kaja; Procter, Simon R; Cutts, Felicity T; Jit, Mark
Assessing the impact of the 2018 Changchun Changsheng vaccine incident on childhood vaccination in China. (2023)
Hou, Zhiyuan; Lai, Xiaozhen; Liu, Yang; Jit, Mark; Larson, Heidi J; Fang, Hai
Analyses of the return on investment of public health interventions: a scoping review and recommendations for future studies. (2023)
Turner, Hugo C; Hori, Yoshiaki; Revill, Paul; Rattanavipapong, Waranya; Arai, Ko; Nonvignon, Justice; Jit, Mark; Teerawattananon, Yot
July 2023
Quantifying patient- and hospital-level antimicrobial resistance dynamics in Staphylococcus aureus from routinely collected data. (2023)
Leclerc, Quentin; Clements, Alastair; Dunn, Helen; Hatcher, James; Lindsay, Jodi A; Grandjean, Louis; Knight, Gwenan M
Accumulation of Immunity in Heavy-Tailed Sexual Contact Networks Shapes Mpox Outbreak Sizes. (2023)
Murayama, Hiroaki; Pearson, Carl AB; Abbott, Sam; Miura, Fuminari; Jung, Sung-Mok; Fearon, Elizabeth; Funk, Sebastian; Endo, Akira
Asymptomatic but infectious - The silent driver of pathogen transmission. A pragmatic review. (2023)
Shaikh, Nabila; Swali, Pooja; Houben, Rein MGJ
Global and regional burden of attributable and associated bacterial antimicrobial resistance avertable by vaccination: modelling study. (2023)
Kim, Chaelin; Holm, Marianne; Frost, Isabel; Hasso-Agopsowicz, Mateusz; Abbas, Kaja
The potential impact of novel tuberculosis vaccine introduction on economic growth in low- and middle-income countries: A modeling study. (2023)
Portnoy, Allison; Arcand, Jean-Louis; Clark, Rebecca A; Weerasuriya, Chathika K; Mukandavire, Christinah; Bakker, Roel; Patouillard, Edith; Gebreselassie, Nebiat; Zignol, Matteo; Jit, Mark; White, Richard G; Menzies, Nicolas A
The potential impact of novel tuberculosis vaccines on health equity and financial protection in low-income and middle-income countries. (2023)
Portnoy, Allison; Clark, Rebecca A; Weerasuriya, Chathika K; Mukandavire, Christinah; Quaife, Matthew; Bakker, Roel; Garcia Baena, Inés; Gebreselassie, Nebiat; Zignol, Matteo; Jit, Mark; White, Richard G; Menzies, Nicolas A
Health Economics Research on Non-surgical Biomedical HIV Prevention: Identifying Gaps and Proposing a Way Forward. (2023)
Torres-Rueda, Sergio; Terris-Prestholt, Fern; Gafos, Mitzy; Indravudh, Pitchaya Peach; Giddings, Rebecca; Bozzani, Fiammetta; Quaife, Matthew; Ghazaryan, Lusine; Mann, Carlyn; Osborne, Connie; Kavanagh, Matthew; Godfrey-Faussett, Peter; Medley, Graham; Malhotra, Shelly
June 2023
Impact, cost-effectiveness, and budget implications of HPV vaccination in Kenya: A modelling study. (2023)
Mwenda, Valerian; Jalang'o, Rose; Miano, Christine; Bor, Joan-Paula; Nyangasi, Mary; Mecca, Lucy; Were, Vincent; Kariithi, Edward; Pecenka, Clint; Schuind, Anne; Abbas, Kaja; Clark, Andrew
Repurposing an integrated national influenza platform for genomic surveillance of SARS-CoV-2 in Ghana: a molecular epidemiological analysis. (2023)
Asante, Ivy Asantewaa; Hsu, Sharon Nienyun; Boatemaa, Linda; Kwasah, Lorreta; Adusei-Poku, Mildred; Odoom, John Kofi; Awuku-Larbi, Yaw; Foulkes, Benjamin H; Oliver-Commey, Joseph; Asiedu, Ernest Konadu; Parker, Matthew D; Mitja, Oriol; Eggo, Rosalind M; de Oliveira-Martins, Leonardo; Asiedu-Bekoe, Franklin; Laryea, Dennis Odai; Kuma-Aboagye, Patrick; Marks, Michael; de Silva, Thushan I; Ampofo, William Kwabena
Estimating health care costs at scale in low- and middle-income countries: Mathematical notations and frameworks for the application of cost functions. (2023)
d'Elbée, Marc; Terris-Prestholt, Fern; Briggs, Andrew; Griffiths, Ulla Kou; Larmarange, Joseph; Medley, Graham Francis; Gomez, Gabriella Beatriz
Ethnic differences in the indirect effects of the COVID-19 pandemic on clinical monitoring and hospitalisations for non-COVID conditions in England: a population-based, observational cohort study using the OpenSAFELY platform. (2023)
Costello, Ruth E; Tazare, John; Piehlmaier, Dominik; Herrett, Emily; Parker, Edward PK; Zheng, Bang; Mansfield, Kathryn E; Henderson, Alasdair D; Carreira, Helena; Bidulka, Patrick; Wong, Angel YS; Warren-Gash, Charlotte; Hayes, Joseph F; Quint, Jennifer K; MacKenna, Brian; Mehrkar, Amir; Eggo, Rosalind M; Katikireddi, Srinivasa Vittal; Tomlinson, Laurie; Langan, Sinéad M; Mathur, Rohini; LH&W NCS (or CONVALESCENCE) Collaborative; OpenSAFELY collaborative
Modeling the potential health impact of prospective Strep A vaccines. (2023)
Giannini, Fiona; Cannon, Jeffrey W; Cadarette, Daniel; Bloom, David E; Moore, Hannah C; Carapetis, Jonathan; Abbas, Kaja
Estimating global and regional between-country inequality in routine childhood vaccine coverage in 195 countries and territories from 2019 to 2021: a longitudinal study. (2023)
Lai, Xiaozhen; Zhang, Haijun; Pouwels, Koen B; Patenaude, Bryan; Jit, Mark; Fang, Hai
Survey of current policies towards widening cervical screening coverage among vulnerable women in 22 European countries. (2023)
Mallafré-Larrosa, Meritxell; Ritchie, David; Papi, Ginevra; Mosquera, Isabel; Mensah, Keitly; Lucas, Eric; Bøje, Rikke Buus; Kirkegaard, Pia; Andersen, Berit; Basu, Partha; CBIG-SCREEN Consortium [Inc Foss, A.]
COVID-19 risk mitigation in reopening mass cultural events: population-based observational study for the UK Events Research Programme in Liverpool City Region. (2023)
Burnside, Girvan; Cheyne, Christopher P; Leeming, Gary; Humann, Michael; Darby, Alistair; Green, Mark A; Crozier, Alexander; Maskell, Simon; O'Halloran, Kay; Musi, Elena; Carmi, Elinor; Khan, Naila; Fisher, Debra; Corcoran, Rhiannon; Dunning, Jake; Edmunds, W John; Tharmaratnam, Kukatharmini; Hughes, David M; Malki-Epshtein, Liora; Cook, Malcolm; Roberts, Ben M; Gallagher, Eileen; Howell, Kate; Chand, Meera; Kemp, Robin; Boulter, Matthew; Fowler, Tom; Semple, Malcolm G; Coffey, Emer; Ashton, Matt; COVID-19 Genomics UK (COG-UK) Consortium; García-Fiñana, Marta; Buchan, Iain E
Infectious Disease Modelling of HIV Prevention Interventions: A Systematic Review and Narrative Synthesis of Compartmental Models. (2023)
Giddings, Rebecca; Indravudh, Pitchaya; Medley, Graham F; Bozzani, Fiammetta; Gafos, Mitzy; Malhotra, Shelly; Terris-Prestholt, Fern; Torres-Rueda, Sergio; Quaife, Matthew
May 2023
Inferring the differences in incubation-period and generation-interval distributions of the Delta and Omicron variants of SARS-CoV-2. (2023)
Park, Sang Woo; Sun, Kaiyuan; Abbott, Sam; Sender, Ron; Bar-On, Yinon M; Weitz, Joshua S; Funk, Sebastian; Grenfell, Bryan T; Backer, Jantien A; Wallinga, Jacco; Viboud, Cecile; Dushoff, Jonathan
Impact of tiered measures on social contact and mixing patterns of in Italy during the second wave of COVID-19. (2023)
Tizzani, Michelle; De Gaetano, Alessandro; Jarvis, Christopher I; Gimma, Amy; Wong, Kerry; Edmunds, W John; Beutels, Philippe; Hens, Niel; Coletti, Pietro; Paolotti, Daniela
Towards a leptospirosis early warning system in northeastern Argentina. (2023)
Lotto Batista, Martín; Rees, Eleanor M; Gómez, Andrea; López, Soledad; Castell, Stefanie; Kucharski, Adam J; Ghozzi, Stéphane; Müller, Gabriela V; Lowe, Rachel
Use of a Sustainable Livelihood Framework-Based Measure to Estimate Socioeconomic Impact of Tuberculosis on Households. (2023)
Timire, Collins; Pedrazzoli, Debora; Boccia, Delia; Houben, Rein MGJ; Ferrand, Rashida A; Bond, Virginia; Kranzer, Katharina
Quantifying progression and regression across the spectrum of pulmonary tuberculosis: a data synthesis study. (2023)
Richards, Alexandra S; Sossen, Bianca; Emery, Jon C; Horton, Katherine C; Heinsohn, Torben; Frascella, Beatrice; Balzarini, Federica; Oradini-Alacreu, Aurea; Häcker, Brit; Odone, Anna; McCreesh, Nicky; Grant, Alison D; Kranzer, Katharina; Cobelens, Frank; Esmail, Hanif; Houben, Rein MGJ
Changes in COVID-19-related mortality across key demographic and clinical subgroups in England from 2020 to 2022: a retrospective cohort study using the OpenSAFELY platform. (2023)
Nab, Linda; Parker, Edward PK; Andrews, Colm D; Hulme, William J; Fisher, Louis; Morley, Jessica; Mehrkar, Amir; MacKenna, Brian; Inglesby, Peter; Morton, Caroline E; Bacon, Sebastian CJ; Hickman, George; Evans, David; Ward, Tom; Smith, Rebecca M; Davy, Simon; Dillingham, Iain; Maude, Steven; Butler-Cole, Ben FC; O'Dwyer, Thomas; Stables, Catherine L; Bridges, Lucy; Bates, Christopher; Cockburn, Jonathan; Parry, John; Hester, Frank; Harper, Sam; Zheng, Bang; Williamson, Elizabeth J; Eggo, Rosalind M; Evans, Stephen JW; Goldacre, Ben; Tomlinson, Laurie A; Walker, Alex J; OpenSAFELY Collaborative
April 2023
Social contact patterns during the COVID-19 pandemic in 21 European countries - evidence from a two-year study. (2023)
Wong, Kerry LM; Gimma, Amy; Coletti, Pietro; CoMix Europe Working Group; Faes, Christel; Beutels, Philippe; Hens, Niel; Jaeger, Veronika K; Karch, Andre; Johnson, Helen; Edmunds, WJohn; Jarvis, Christopher I
Evaluating the equity impact and cost-effectiveness of digital adherence technologies with differentiated care to support tuberculosis treatment adherence in Ethiopia: protocol and analysis plan for the health economics component of a cluster randomised trial. (2023)
Foster, Nicola; Tadesse, Amare W; McQuaid, Christopher Finn; Gosce, Lara; Abdurhman, Tofik; Assefa, Demelash; Bedru, Ahmed; Houben, Rein MGJ; van Kalmthout, Kristian; Letta, Taye; Mohammed, Zemedu; van Rest, Job; Umeta, Demekech G; Weldemichael, Gedion T; Yazew, Hiwot; Jerene, Degu; Quaife, Matthew; Fielding, Katherine L
Syndemic of factors that shape the early lives of women who enter into sex work: a qualitative methods study from Nairobi, Kenya. (2023)
Shah, Pooja; Beattie, Tara S; Kabuti, Rhoda; Liku, Jennifer; Kung'u, Mary; Babu, Hellen; Jama, Zaina; Maisha Fiti Study Champions; Kaul, Rupert; Weiss, Helen Anne; Kyegombe, Nambusi; Medley, Graham F; Devries, Karen; Gafos, Mitzy; Nyariki, Emily; Kimani, Joshua; Seeley, Janet
Cost-effectiveness of pharmaceutical strategies to prevent respiratory syncytial virus disease in young children: a decision-support model for use in low-income and middle-income countries. (2023)
Mahmud, Sarwat; Baral, Ranju; Sanderson, Colin; Pecenka, Clint; Jit, Mark; Li, You; Clark, Andrew
Tuberculosis and nutrition: what gets measured gets managed. (2023)
McQuaid, C Finn; Sinha, Pranay; Bhargava, Madhavi; Weerasuriya, Chathika; Houben, Rein MGJ; Bhargava, Anurag
Monitoring Temporal Changes in SARS-CoV-2 Spike Antibody Levels and Variant-Specific Risk for Infection, Dominican Republic, March 2021-August 2022. (2023)
Nilles, Eric J; de St Aubin, Michael; Dumas, Devan; Duke, William; Etienne, Marie Caroline; Abdalla, Gabriela; Jarolim, Petr; Oasan, Timothy; Garnier, Salome; Iihoshi, Naomi; Lopez, Beatriz; de la Cruz, Lucia; Puello, Yosanly Cornelio; Baldwin, Margaret; Roberts, Kathryn W; Peña, Farah; Durski, Kara; Sanchez, Isaac Miguel; Gunter, Sarah M; Kneubehl, Alexander R; Murray, Kristy O; Lino, Allison; Strobel, Sarah; Baez, Amado Alejandro; Lau, Colleen L; Kucharski, Adam; Gutiérrez, Emily Zielinski; Skewes-Ramm, Ronald; Vasquez, Marietta; Paulino, Cecilia Then
The natural history of untreated pulmonary tuberculosis in adults: a systematic review and meta-analysis. (2023)
Sossen, Bianca; Richards, Alexandra S; Heinsohn, Torben; Frascella, Beatrice; Balzarini, Federica; Oradini-Alacreu, Aurea; Odone, Anna; Rogozinska, Ewelina; Häcker, Brit; Cobelens, Frank; Kranzer, Katharina; Houben, Rein MGJ; Esmail, Hanif
The impact of alternative delivery strategies for novel tuberculosis vaccines in low-income and middle-income countries: a modelling study. (2023)
Clark, Rebecca A; Mukandavire, Christinah; Portnoy, Allison; Weerasuriya, Chathika K; Deol, Arminder; Scarponi, Danny; Iskauskas, Andrew; Bakker, Roel; Quaife, Matthew; Malhotra, Shelly; Gebreselassie, Nebiat; Zignol, Matteo; Hutubessy, Raymond CW; Giersing, Birgitte; Jit, Mark; Harris, Rebecca C; Menzies, Nicolas A; White, Richard G
Influenza vaccine uptake among children and older adults in China: a secondary analysis of a quasi-experimental study. (2023)
Du, Yumeng; Jin, Chenqi; Jit, Mark; Chantler, Tracey; Lin, Leesa; Larson, Heidi J; Li, Jing; Gong, Wenfeng; Yang, Fan; Ren, Nina; Cheng, Weibin; Zhou, Yi; Tang, Weiming; Tucker, Joseph D; Wu, Dan
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Colonization and transmission of Staphylococcus aureus in schools: a citizen science project. (2023)
van Tonder, Andries J; McCullagh, Frances; McKeand, Hanan; Thaw, Sue; Bellis, Katie; Raisen, Claire; Lay, Liz; Aggarwal, Dinesh; Holmes, Mark; Parkhill, Julian; Harrison, Ewan M; Kucharski, Adam; Conlan, Andrew
March 2023
Estimating the cost-effectiveness of maternal vaccination and monoclonal antibodies for respiratory syncytial virus in Kenya and South Africa. (2023)
Koltai, Mihaly; Moyes, Jocelyn; Nyawanda, Bryan; Nyiro, Joyce; Munywoki, Patrick K; Tempia, Stefano; Li, Xiao; Antillon, Marina; Bilcke, Joke; Flasche, Stefan; Beutels, Philippe; Nokes, D James; Cohen, Cheryl; Jit, Mark
Vaccination of Older Adults Against Respiratory Syncytial Virus: The Final Pieces of the Puzzle. (2023)
Atkins, Katherine E; Hodgson, David
The role of global reanalyses in climate services for health: Insights from the <i>Lancet</i> Countdown. (2023)
Di Napoli, Claudia; Romanello, Marina; Minor, Kelton; Chambers, Jonathan; Dasgupta, Shouro; Escobar, Luis E; Hang, Yun; Hänninen, Risto; Liu, Yang; Lotto Batista, Martin; Lowe, Rachel; Murray, Kris A; Owfi, Fereidoon; Rabbaniha, Mahnaz; Shi, Liuhua; Sofiev, Mikhail; Tabatabaei, Meisam; Robinson, Elizabeth JZ
What, how and who: Cost-effectiveness analyses of COVID-19 vaccination to inform key policies in Nigeria. (2023)
Ruiz, Francis J; Torres-Rueda, Sergio; Pearson, Carl AB; Bergren, Eleanor; Okeke, Chinyere; Procter, Simon R; Madriz-Montero, Andres; Jit, Mark; Vassall, Anna; Uzochukwu, Benjamin SC
Potential health and economic impact of paediatric vaccination using next-generation influenza vaccines in Kenya: a modelling study. (2023)
Waterlow, Naomi R; Radhakrishnan, Sreejith; Dawa, Jeanette; van Leeuwen, Edwin; Procter, Simon R; Lambach, Philipp; Bresee, Joseph; Mazur, Marie; Eggo, Rosalind M; Jit, Mark
Relative role of border restrictions, case finding and contact tracing in controlling SARS-CoV-2 in the presence of undetected transmission: a mathematical modelling study. (2023)
Pung, Rachael; Clapham, Hannah E; Russell, Timothy W; CMMID COVID-19 Working Group; Lee, Vernon J; Kucharski, Adam J
Maternal immunisation against Group B Streptococcus: A global analysis of health impact and cost-effectiveness. (2023)
Procter, Simon R; Gonçalves, Bronner P; Paul, Proma; Chandna, Jaya; Seedat, Farah; Koukounari, Artemis; Hutubessy, Raymond; Trotter, Caroline; Lawn, Joy E; Jit, Mark
Demonstrating multi-country calibration of a tuberculosis model using new history matching and emulation package - hmer. (2023)
Scarponi, Danny; Iskauskas, Andrew; Clark, Rebecca A; Vernon, Ian; McKinley, Trevelyan J; Goldstein, Michael; Mukandavire, Christinah; Deol, Arminder; Weerasuriya, Chathika; Bakker, Roel; White, Richard G; McCreesh, Nicky
RESIST2: RESIST2 Workshop. (2023)
Knight, Gwen
Genomic epidemiology of SARS-CoV-2 infections in The Gambia: an analysis of routinely collected surveillance data between March, 2020, and January, 2022. (2023)
Kanteh, Abdoulie; Jallow, Haruna S; Manneh, Jarra; Sanyang, Bakary; Kujabi, Mariama A; Ndure, Sainabou Laye; Jarju, Sheikh; Sey, Alhagie Papa; Damilare K, Dabiri; Bah, Yaya; Sambou, Sana; Jarju, Gibril; Manjang, Buba; Jagne, Abubacarr; Bittaye, Sheikh Omar; Bittaye, Mustapha; Forrest, Karen; Tiruneh, Desta Alamerew; Samateh, Ahmadou Lamin; Jagne, Sheriffo; Hué, Stéphane; Mohammed, Nuredin; Amambua-Ngwa, Alfred; Kampmann, Beate; D'Alessandro, Umberto; de Silva, Thushan I; Roca, Anna; Sesay, Abdul Karim
Assessing the impacts of COVID-19 vaccination programme's timing and speed on health benefits, cost-effectiveness, and relative affordability in 27 African countries. (2023)
Liu, Yang; Procter, Simon R; Pearson, Carl AB; Montero, Andrés Madriz; Torres-Rueda, Sergio; Asfaw, Elias; Uzochukwu, Benjamin; Drake, Tom; Bergren, Eleanor; Eggo, Rosalind M; Ruiz, Francis; Ndembi, Nicaise; Nonvignon, Justice; Jit, Mark; Vassall, Anna
February 2023
Drivers of Antibiotic Use in Semi-Intensive Poultry Farms: Evidence from a Survey in Senegal. (2023)
Emes, Eve; Faye, Adiouma; Naylor, Nichola; Belay, Dagim; Ngom, Babacar; Fall, Awa Gueye; Knight, Gwen; Dione, Michel
Cost-effectiveness of monoclonal antibody and maternal immunization against respiratory syncytial virus (RSV) in infants: Evaluation for six European countries. (2023)
Getaneh, Abraham M; Li, Xiao; Mao, Zhuxin; Johannesen, Caroline K; Barbieri, Elisa; van Summeren, Jojanneke; Wang, Xin; Tong, Sabine; Baraldi, Eugenio; Phijffer, Emily; Rizzo, Caterina; van Wijhe, Maarten; Heikkinen, Terho; Bont, Louis; Willem, Lander; Jit, Mark; Beutels, Philippe; Bilcke, Joke; for Respiratory Syncytial Virus Consortium in Europe (RESCEU) in
Emergent variant modeling of the serological repertoire to norovirus in young children. (2023)
Lindesmith, Lisa C; Brewer-Jensen, Paul D; Conrad, Helen; O'Reilly, Kathleen M; Mallory, Michael L; Kelly, Daniel; Williams, Rachel; Edmunds, W John; Allen, David J; Breuer, Judith; Baric, Ralph S
Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission: a prospective cohort study in England. (2023)
Clifford, Samuel; Waight, Pauline; Hackman, Jada; Hué, Stephane; Gower, Charlotte M; Kirsebom, Freja CM; Skarnes, Catriona; Letley, Louise; Lopez Bernal, Jamie; Andrews, Nick; Flasche, Stefan; Miller, Elizabeth
Protocol for an OpenSAFELY cohort study collecting patient-reported outcome measures using the TPP Airmid smartphone application and linked big data to quantify the health and economic costs of long COVID (OpenPROMPT). (2023)
Herrett, Emily; Tomlin, Keith; Lin, Liang-Yu; Tomlinson, Laurie A; Jit, Mark; Briggs, Andrew; Marks, Michael; Sandmann, Frank; Parry, John; Bates, Christopher; Morley, Jessica; Bacon, Seb; Butler-Cole, Benjamin; Mahalingasivam, Viyaasan; Dennison, Alan; Smith, Deb; Gabriel, Ethan; Mehrkar, Amir; Goldacre, Ben; Smeeth, Liam; Eggo, Rosalind MM
A phylogenetic study of dengue virus in urban Vietnam shows long-term persistence of endemic strains. (2023)
Ashall, James; Shah, Sonal; Biggs, Joseph R; Chang, Jui-Ning R; Jafari, Yalda; Brady, Oliver J; Mai, Huynh Kim; Lien, Le Thuy; Do Thai, Hung; Nguyen, Hien Anh Thi; Anh, Dang Duc; Iwasaki, Chihiro; Kitamura, Noriko; Van Loock, Marnix; Herrera-Taracena, Guillermo; Rasschaert, Freya; Van Wesenbeeck, Liesbeth; Yoshida, Lay-Myint; Hafalla, Julius Clemence R; Hue, Stephane; Hibberd, Martin L
Cost-effectiveness of tuberculosis infection prevention and control interventions in South African clinics: a model-based economic evaluation informed by complexity science methods. (2023)
Bozzani, Fiammetta Maria; McCreesh, Nicky; Diaconu, Karin; Govender, Indira; White, Richard G; Kielmann, Karina; Grant, Alison D; Vassall, Anna
First dose COVID-19 vaccine coverage amongst adolescents and children in England: an analysis of 3.21 million patients' primary care records in situ using OpenSAFELY. (2023)
Hopcroft, Lisa E; Curtis, Helen J; Brown, Andrew D; Hulme, William J; Andrews, Colm D; Morton, Caroline E; Inglesby, Peter; Morley, Jessica; Mehrkar, Amir; Bacon, Sebastian C; Eggo, Rosalind M; Mahalingasivam, Viyaasan; Parker, Edward PK; Tomlinson, Laurie A; Bates, Christopher; Cockburn, Jonathan; Parry, John; Hester, Frank; Harper, Sam; Goldacre, Ben; Walker, Alex J; MacKenna, Brian
Impact of Reversion of Mycobacterium tuberculosis Immunoreactivity Tests on the Estimated Annual Risk of Tuberculosis Infection. (2023)
Schwalb, Alvaro; Emery, Jon C; Dale, Katie D; Horton, Katherine C; Ugarte-Gil, César A; Houben, Rein MGJ
Optimal age targeting for pneumococcal vaccination in older adults; a modelling study. (2023)
Thindwa, Deus; Clifford, Samuel; Kleynhans, Jackie; von Gottberg, Anne; Walaza, Sibongile; Meiring, Susan; Swarthout, Todd D; Miller, Elizabeth; McIntyre, Peter; Andrews, Nick; Amin-Chowdhury, Zahin; Fry, Norman; Jambo, Kondwani C; French, Neil; Almeida, Samanta Cristine Grassi; Ladhani, Shamez N; Heyderman, Robert S; Cohen, Cheryl; de Cunto Brandileone, Maria Cristina; Flasche, Stefan
January 2023
The cost and cost-effectiveness of novel tuberculosis vaccines in low- and middle-income countries: A modeling study. (2023)
Portnoy, Allison; Clark, Rebecca A; Quaife, Matthew; Weerasuriya, Chathika K; Mukandavire, Christinah; Bakker, Roel; Deol, Arminder K; Malhotra, Shelly; Gebreselassie, Nebiat; Zignol, Matteo; Sim, So Yoon; Hutubessy, Raymond CW; Baena, Inés Garcia; Nishikiori, Nobuyuki; Jit, Mark; White, Richard G; Menzies, Nicolas A
Relaxation of anti-COVID-19 measures reveals new challenges for infectious disease outbreak forecasting. (2023)
Brady, Oliver J; Hofmann, Barbara; Colón-González, Felipe J; Gibb, Rory; Lowe, Rachel; Tsarouchi, Gina; Harpham, Quillon; Lumbroso, Darren; Lan, Phan Trong; Nam, Vu Sinh
Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis. (2023)
Baxter, James; Langhorne, Sarah; Shi, Ting; Tully, Damien C; Villabona-Arenas, Ch Julián; Hué, Stéphane; Albert, Jan; Leigh Brown, Andrew; Atkins, Katherine E
The effectiveness of pay-it-forward in addressing HPV vaccine delay and increasing uptake among 15-18-year-old adolescent girls compared to user-paid vaccination: a study protocol for a two-arm randomized controlled trial in China. (2023)
Li, Yifan; Qin, Chuanyu; Qiu, Shengyue; He, Yu; Pang, Linchuan; Xu, Xiaolan; Yim, Vivian Wan-Cheong; Tang, Shenglan; Du, Heng; Gong, Wenfeng; Yang, Fan; Tucker, Joseph D; Tang, Weiming; Wang, Yun; Lin, Leesa; Jit, Mark; Song, Wei; Li, Chunrong; Smith, Jennifer; Li, Jing; Wu, Dan
Potential benefit of extended dose schedules of human papillomavirus vaccination in the context of scarce resources and COVID-19 disruptions in low-income and middle-income countries: a mathematical modelling analysis. (2023)
Bénard, Élodie; Drolet, Mélanie; Laprise, Jean-François; Jit, Mark; Prem, Kiesha; Boily, Marie-Claude; Brisson, Marc
Does repeated influenza vaccination attenuate effectiveness? A systematic review and meta-analysis. (2023)
Jones-Gray, Elenor; Robinson, Elizabeth J; Kucharski, Adam J; Fox, Annette; Sullivan, Sheena G
Is there a role for RDTs as we live with COVID-19? An assessment of different strategies. (2023)
Bonnet, Gabrielle; Vassall, Anna; Jit, Mark
Contribution of remote M.tuberculosis infection to tuberculosis disease: A 30-year population study. (2023)
Glynn, Judith R; Khan, Palwasha; Mzembe, Themba; Sichali, Lifted; Fine, Paul EM; Crampin, Amelia C; Houben, Rein MGJ
Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study. (2023)
Hackman, Jada; Sheppard, Carmen; Phelan, Jody; Jones-Warner, William; Sobkowiak, Ben; Shah, Sonal; Litt, David; Fry, Norman K; Toizumi, Michiko; Yoshida, Lay-Myint; Hibberd, Martin; Miller, Elizabeth; Flasche, Stefan; Hué, Stéphane
Quantifying the value of viral genomics when inferring who infected whom in the 2014-16 Ebola virus outbreak in Guinea. (2023)
Robert, Alexis; Tsui Lok Hei, Joseph; Watson, Conall H; Gsell, Pierre-Stéphane; Hall, Yper; Rambaut, Andrew; Longini, Ira M; Sakoba, Keïta; Kucharski, Adam J; Touré, Alhassane; Danmadji Nadlaou, Sévérine; Saidou Barry, Mamadou; Fofana, Thierno Oumar; Lansana Kaba, Ibrahima; Sylla, Lansana; Diaby, Mohamed Lamine; Soumah, Ousmane; Diallo, Abdourahime; Niare, Amadou; Diallo, Abdourahamane; Eggo, Rosalind M; Caroll, Miles W; Henao-Restrepo, Ana Maria; Edmunds, W John; Hué, Stéphane
Pay-it-forward influenza vaccination among older adults and children: A cost-effectiveness analysis in China. (2023)
Tang, Fanny Fong-Yi; Kosana, Priya; Jit, Mark; Terris-Prestholt, Fern; Wu, Dan; Ong, Jason J; Tucker, Joseph D
2023
Streptococcus pyogenes carriage acquisition, persistence and transmission dynamics within households in The Gambia (SpyCATS): protocol for a longitudinal household cohort study. (2023)
Armitage, Edwin P; Keeley, Alex J; de Crombrugghe, Gabrielle; Senghore, Elina; Camara, Fatoumatta E; Jammeh, Musukoi; Bittaye, Amat; Ceesay, Haddy; Ceesay, Isatou; Samateh, Bunja; Manneh, Muhammed; Sesay, Abdul Karim; Kampmann, Beate; Kucharski, Adam; de Silva, Thushan I; Marks, Michael
Association between living with children, vaccination, and outcomes from COVID-19: an OpenSAFELY cohort study of 12 million adults in England during 2021–22. (2023)
Cowling, Thomas E; Forbes, Harriet; Wing, Kevin; Tazare, John; Schultze, Anna; Morton, Caroline E; Bacon, Sebastian; MacKenna, Brian; Walker, Alex J; Hulme, Will; Bates, Chris; Mehrkar, Amir; Curtis, Helen J; Evans, David; Inglesby, Peter; Davy, Simon; Cockburn, Jonathan; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Evans, Stephen JW; Bhaskaran, Krishnan; Williamson, Elizabeth J; Eggo, Rosalind M; Goldacre, Ben; Tomlinson, Laurie A
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