Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Birney, E; Stamatoyannopoulos, JA; Dutta, A; Guigo, R; Gingeras, TR; Margulies, EH; Weng, ZP; Snyder, M; Dermitzakis, ET; Thurman, RE; +302 more... Kuehn, MS; Taylor, CM; Neph, S; Koch, CM; Asthana, S; Malhotra, A; Adzhubei, I; Greenbaum, JA; Andrews, RM; Flicek, P; Boyle, PJ; Cao, H; Carter, NP; Clelland, GK; Davis, S; Day, N; Dhami, P; Dillon, SC; Dorschner, MO; Fiegler, H; Giresi, PG; Goldy, J; Hawrylycz, M; Haydock, A; Humbert, R; James, KD; Johnson, BE; Johnson, EM; Frum, TT; Rosenzweig, ER; Karnani, N; Lee, K; Lefebvre, GC; Navas, PA; Neri, F; Parker, SCJ; Sabo, PJ; Sandstrom, R; Shafer, A; Vetrie, D; Weaver, M; Wilcox, S; Yu, M; Collins, FS; Dekker, J; Lieb, JD; Tullius, TD; Crawford, GE; Sunyaev, S; Noble, WS; Dunham, I; Denoeud, F; Reymond, A; Kapranov, P; Rozowsky, J; Zheng, DY; Castelo, R; Frankish, A; Harrow, J; Ghosh, S; Sandelin, A; Hofacker, IL; Baertsch, R; Keefe, D; Dike, S; Cheng, J; Hirsch, HA; Sekinger, EA; Lagarde, J; Abril, JF; Shahab, A; Flamm, C; Fried, C; Hackermuller, J; Hertel, J; Lindemeyer, M; Missal, K; Tanzer, A; Washietl, S; Korbel, J; Emanuelsson, O; Pedersen, JS; Holroyd, N; Taylor, R; Swarbreck, D; Matthews, N; Dickson, MC; Thomas, DJ; Weirauch, MT; Gilbert, J; Drenkow, J; Bell, I; Zhao, X; Srinivasan, KG; Sung, WK; Ooi, HS; Chiu, KP; Foissac, S; Alioto, T; Brent, M; Pachter, L; Tress, ML; Valencia, A; Choo, SW; Choo, CY; Ucla, C; Manzano, C; Wyss, C; Cheung, E; Clark, TG; Brown, JB; Ganesh, M; Patel, S; Tammana, H; Chrast, J; Henrichsen, CN; Kai, C; Kawai, J; Nagalakshmi, U; Wu, JQ; Lian, Z; Lian, J; Newburger, P; Zhang, XQ; Bickel, P; Mattick, JS; Carninci, P; Hayashizaki, Y; Weissman, S; Hubbard, T; Myers, RM; Rogers, J; Stadler, PF; Lowe, TM; Wei, CL; Ruan, YJ; Struhl, K; Gerstein, M; Antonarakis, SE; Fu, YT; Green, ED; Karaoz, U; Siepel, A; Taylor, J; Liefer, LA; Wetterstrand, KA; Good, PJ; Feingold, EA; Guyer, MS; Cooper, GM; Asimenos, G; Dewey, CN; Hou, MM; Nikolaev, S; Montoya-Burgos, JI; Loytynoja, A; Whelan, S; Pardi, F; Massingham, T; Huang, HY; Zhang, NR; Holmes, I; Mullikin, JC; Ureta-Vidal, A; Paten, B; Seringhaus, M; Church, D; Rosenbloom, K; Kent, WJ; Stone, EA; Batzoglou, S; Goldman, N; Hardison, RC; Haussler, D; Miller, W; Sidow, A; Trinklein, ND; Zhang, ZDD; Barrera, L; Stuart, R; King, DC; Ameur, A; Enroth, S; Bieda, MC; Kim, J; Bhinge, AA; Jiang, N; Liu, J; Yao, F; Vega, VB; Lee, CWH; Ng, P; Yang, A; Moqtaderi, Z; Zhu, Z; Xu, XQ; Squazzo, S; Oberley, MJ; Inman, D; Singer, MA; Richmond, TA; Munn, KJ; Rada-Iglesias, A; Wallerman, O; Komorowski, J; Fowler, JC; Couttet, P; Bruce, AW; Dovey, OM; Ellis, PD; Langford, CF; Nix, DA; Euskirchen, G; Hartman, S; Urban, AE; Kraus, P; van Calcar, S; Heintzman, N; Kim, TH; Wang, K; Qu, CX; Hon, G; Luna, R; Glass, CK; Rosenfeld, MG; Aldred, SF; Cooper, SJ; Halees, A; Lin, JM; Shulha, HP; Zhang, XL; Xu, MS; Haidar, JNS; Yu, Y; Iyer, VR; Green, RD; Wadelius, C; Farnham, PJ; Ren, B; Harte, RA; Hinrichs, AS; Trumbower, H; Clawson, H; Hillman-Jackson, J; Zweig, AS; Smith, K; Thakkapallayil, A; Barber, G; Kuhn, RM; Karolchik, D; Armengol, L; Bird, CP; de Bakker, PIW; Kern, AD; Lopez-Bigas, N; Martin, JD; Stranger, BE; Woodroffe, A; Davydov, E; Dimas, A; Eyras, E; Hallgrimsdottir, IB; Huppert, J; Zody, MC; Abecasis, GR; Estivill, X; Bouffard, GG; Guan, XB; Hansen, NF; Idol, JR; Maduro, VVB; Maskeri, B; McDowell, JC; Park, M; Thomas, PJ; Young, AC; Blakesley, RW; Muzny, DM; Sodergren, E; Wheeler, DA; Worley, KC; Jiang, HY; Weinstock, GM; Gibbs, RA; Graves, T; Fulton, R; Mardis, ER; Wilson, RK; Clamp, M; Cuff, J; Gnerre, S; Jaffe, DB; Chang, JL; Lindblad-Toh, K; Lander, ES; Koriabine, M; Nefedov, M; Osoegawa, K; Yoshinaga, Y; Zhu, BL; de Jong, PJ; Consortium, EP; (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447 (7146). pp. 799-816. ISSN 0028-0836 DOI: https://doi.org/10.1038/nature05874

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