Research Centres (27091)

Centre for the Mathematical Modelling of Infectious Diseases (1232) Month Authors/Creators Item Type Full Text

December 2022

Preventing pneumococcal disease among vulnerable adults in low- and middle-income settings in the era of routine infant pneumococcal vaccination. (2022) Thindwa, D

Coverage and effectiveness of conditional cash transfer for people with drug resistant tuberculosis in Zimbabwe: A mixed methods study. (2022) Timire, Collins; Sandy, Charles; Ferrand, Rashida A; Mubau, Regina; Shiri, Peter; Mbiriyawanda, Obert; Mbiba, Fredrick; Houben, Rein MGJ; Pedrazzoli, Debora; Bond, Virginia; Foster, Nicola; Kranzer, Katharina

Costs and Cost-Effectiveness of Biomedical, Non-Surgical HIV Prevention Interventions: A Systematic Literature Review. (2022) Bozzani, Fiammetta M; Terris-Prestholt, Fern; Quaife, Matthew; Gafos, Mitzy; Indravudh, Pitchaya P; Giddings, Rebecca; Medley, Graham F; Malhotra, Shelly; Torres-Rueda, Sergio

Social contacts and other risk factors for respiratory infections among internally displaced people in Somaliland. (2022) van Zandvoort, Kevin; Bobe, Mohamed Omer; Hassan, Abdirahman Ibrahim; Abdi, Mohamed Ismail; Ahmed, Mohammed Saed; Soleman, Saeed Mohamood; Warsame, Mohamed Yusuf; Wais, Muna Awil; Diggle, Emma; McGowan, Catherine R; Satzke, Catherine; Mulholland, Kim; Egeh, Mohamed Mohamoud; Hassan, Mukhtar Muhumed; Hergeeye, Mohamed Abdi; Eggo, Rosalind M; Checchi, Francesco; Flasche, Stefan

Public health and social measures to mitigate the health and economic impact of the COVID-19 pandemic in Turkey, Egypt, Ukraine, Kazakhstan, and Poland during 2020-2021: situational analysis. (2022) Kitamura, Noriko; Abbas, Kaja; Nathwani, Dilip

Pneumococcal vaccine schedules (PVS) study: a cluster-randomised, non-inferiority trial of an alternative versus standard schedule for pneumococcal conjugate vaccination-statistical analysis plan. (2022) Mackenzie, Grant A; Palmu, Arto A; Jokinen, Jukka; Osei, Isaac; Flasche, Stefan; Greenwood, Brian; Mulholland, Kim; Nguyen, Cattram

The overlapping burden of the three leading causes of disability and death in sub-Saharan African children. (2022) Reiner, Robert C; LBD Triple Burden Collaborators; Hay, Simon I picture_as_pdf

November 2022

Challenges of using modelling evidence in the visceral leishmaniasis elimination programme in India. (2022) Dial, Natalie J; Croft, Simon L; Chapman, Lloyd AC; Terris-Prestholt, Fern; Medley, Graham F

Cost-Effectiveness of Respiratory Syncytial Virus Preventive Interventions in Children: A Model Comparison Study. (2022) Li, Xiao; Hodgson, David; Flaig, Julien; Kieffer, Alexia; Herring, William L; Beyhaghi, Hadi; Willem, Lander; Jit, Mark; Bilcke, Joke; Beutels, Philippe; REspiratory Syncytial virus Consortium in EUrope (RESCEU) Invest

Evaluating the impact of Respiratory Syncytial Virus immunisation strategies on antibiotic use and drug resistant bacterial infections in England. (2022) Atkins, Katherine E; Hodgson, David; Jit, Mark; Davies, Nicholas G

Variance-based sensitivity analysis of tuberculosis transmission models. (2022) Sumner, Tom; White, Richard G

Identifying COVID-19 optimal vaccine dose using mathematical immunostimulation/immunodynamic modelling. (2022) Rhodes, Sophie; Smith, Neal; Evans, Thomas; White, Richard

Sebastian Funk, Sam Abbott and Johannes Bracher’s Discussion Contribution to the Papers in Session 2 of The Royal Statistical Society’s Special Topic Meeting on Covid-19 Transmission: 11 June 2021. (2022) Funk, Sebastian; Abbott, Sam; Bracher, Johannes

Comparative effectiveness of sotrovimab and molnupiravir for prevention of severe covid-19 outcomes in patients in the community: observational cohort study with the OpenSAFELY platform. (2022) Zheng, Bang; Green, Amelia CA; Tazare, John; Curtis, Helen J; Fisher, Louis; Nab, Linda; Schultze, Anna; Mahalingasivam, Viyaasan; Parker, Edward PK; Hulme, William J; Bacon, Sebastian CJ; DeVito, Nicholas J; Bates, Christopher; Evans, David; Inglesby, Peter; Drysdale, Henry; Davy, Simon; Cockburn, Jonathan; Morton, Caroline E; Hickman, George; Ward, Tom; Smith, Rebecca M; Parry, John; Hester, Frank; Harper, Sam; Mehrkar, Amir; Eggo, Rosalind M; Walker, Alex J; Evans, Stephen JW; Douglas, Ian J; MacKenna, Brian; Goldacre, Ben; Tomlinson, Laurie A

SARS-CoV-2 seroprevalence, cumulative infections, and immunity to symptomatic infection - A multistage national household survey and modelling study, Dominican Republic, June-October 2021. (2022) Nilles, Eric J; Paulino, Cecilia Then; de St Aubin, Michael; Restrepo, Angela Cadavid; Mayfield, Helen; Dumas, Devan; Finch, Emilie; Garnier, Salome; Etienne, Marie Caroline; Iselin, Louisa; Duke, William; Jarolim, Petr; Oasan, Timothy; Yu, Jingyou; Wan, Huahua; Peña, Farah; Iihoshi, Naomi; Abdalla, Gabriela; Lopez, Beatriz; Cruz, Lucia de la; Henríquez, Bernarda; Espinosa-Bode, Andres; Puello, Yosanly Cornelio; Durski, Kara; Baldwin, Margaret; Baez, Amado Alejandro; Merchant, Roland C; Barouch, Dan H; Skewes-Ramm, Ronald; Gutiérrez, Emily Zielinski; Kucharski, Adam; Lau, Colleen L

Feasibility of novel adult tuberculosis vaccination in South Africa: a cost-effectiveness and budget impact analysis. (2022) Jayawardana, Sahan; Weerasuriya, Chathika K; Pelzer, Puck T; Seeley, Janet; Harris, Rebecca C; Tameris, Michele; Tait, Dereck; White, Richard G; Asaria, Miqdad

Prevalence and risk factors for human papillomavirus infection among female sex workers in Hanoi and Ho Chi Minh City, Viet Nam: a cross-sectional study. (2022) Pham, Quang Duy; Prem, Kiesha; Le, Tuan Anh; Van Trang, Nguyen; Jit, Mark; Nguyen, Tuan Anh; Cao, Van; Le-Ha, Tam-Duong; Chu, Mai Thi Ngoc; Le, Ly Thi Khanh; Toh, Zheng Quan; Brisson, Marc; Garland, Suzanne; Murray, Gerald; Bright, Kathryn; Dang, Duc Anh; Tran, Hau Phuc; Mulholland, Edward Kim

Evaluating and mitigating the potential indirect effect of COVID-19 on control programmes for seven neglected tropical diseases: a modelling study. (2022) Borlase, Anna; Le Rutte, Epke A; Castaño, Soledad; Blok, David J; Toor, Jaspreet; Giardina, Federica; Davis, Emma L; NTD Modelling Consortium

Considering equity in priority setting using transmission models: Recommendations and data needs. (2022) Quaife, M; Medley, GF; Jit, M; Drake, T; Asaria, M; van Baal, P; Baltussen, R; Bollinger, L; Bozzani, F; Brady, O; Broekhuizen, H; Chalkidou, K; Chi, Y-L; Dowdy, DW; Griffin, S; Haghparast-Bidgoli, H; Hallett, T; Hauck, K; Hollingsworth, TD; McQuaid, CF; Menzies, NA; Merritt, MW; Mirelman, A; Morton, A; Ruiz, FJ; Siapka, M; Skordis, J; Tediosi, F; Walker, P; White, RG; Winskill, P; Vassall, A; Gomez, GB

Natural and hybrid immunity following four COVID-19 waves: A prospective cohort study of mothers in South Africa. (2022) Zar, Heather J; MacGinty, Rae; Workman, Lesley; Botha, Maresa; Johnson, Marina; Hunt, Adam; Burd, Tiffany; Nicol, Mark P; Flasche, Stefan; Quilty, Billy J; Goldblatt, David

Optimal Respiratory Syncytial Virus intervention programmes using Nirsevimab in England and Wales. (2022) Hodgson, David; Koltai, Mihaly; Krauer, Fabienne; Flasche, Stefan; Jit, Mark; Atkins, Katherine E

Modelling the synergistic effect of bacteriophage and antibiotics on bacteria: Killers and drivers of resistance evolution. (2022) Leclerc, Quentin J; Lindsay, Jodi A; Knight, Gwenan M

Developing tuberculosis vaccines for people with HIV: consensus statements from an international expert panel. (2022) Miner, Maurine D; Hatherill, Mark; Mave, Vidya; Gray, Glenda E; Nachman, Sharon; Read, Sarah W; White, Richard G; Hesseling, Anneke; Cobelens, Frank; Patel, Sheral; Frick, Mike; Bailey, Theodore; Seder, Robert; Flynn, Joanne; Rengarajan, Jyothi; Kaushal, Deepak; Hanekom, Willem; Schmidt, Alexander C; Scriba, Thomas J; Nemes, Elisa; Andersen-Nissen, Erica; Landay, Alan; Dorman, Susan E; Aldrovandi, Grace; Cranmer, Lisa M; Day, Cheryl L; Garcia-Basteiro, Alberto L; Fiore-Gartland, Andrew; Mogg, Robin; Kublin, James G; Gupta, Amita; Churchyard, Gavin

October 2022

National and subnational short-term forecasting of COVID-19 in Germany and Poland during early 2021. (2022) Bracher, Johannes; Wolffram, Daniel; Deuschel, Jannik; Görgen, Konstantin; Ketterer, Jakob L; Ullrich, Alexander; Abbott, Sam; Barbarossa, Maria V; Bertsimas, Dimitris; Bhatia, Sangeeta; Bodych, Marcin; Bosse, Nikos I; Burgard, Jan Pablo; Castro, Lauren; Fairchild, Geoffrey; Fiedler, Jochen; Fuhrmann, Jan; Funk, Sebastian; Gambin, Anna; Gogolewski, Krzysztof; Heyder, Stefan; Hotz, Thomas; Kheifetz, Yuri; Kirsten, Holger; Krueger, Tyll; Krymova, Ekaterina; Leithäuser, Neele; Li, Michael L; Meinke, Jan H; Miasojedow, Błażej; Michaud, Isaac J; Mohring, Jan; Nouvellet, Pierre; Nowosielski, Jedrzej M; Ozanski, Tomasz; Radwan, Maciej; Rakowski, Franciszek; Scholz, Markus; Soni, Saksham; Srivastava, Ajitesh; Gneiting, Tilmann; Schienle, Melanie

The Correlated Beta Dose Optimisation Approach: Optimal Vaccine Dosing Using Mathematical Modelling and Adaptive Trial Design. (2022) Benest, John; Rhodes, Sophie; Evans, Thomas G; White, Richard G

Know your tuberculosis epidemic-Is it time to add Mycobacterium tuberculosis immunoreactivity back into global surveillance? (2022) Rickman, Hannah M; Kamchedzera, Wala; Schwalb, Alvaro; Phiri, Mphatso D; Ruhwald, Morten; Shanaube, Kwame; Dodd, Peter J; Houben, Rein MGJ; Corbett, Elizabeth L; MacPherson, Peter

Critical Assessment of Current Health Policies Used for Managing Diabetes in the United Kingdom. (2022) Bednarska, Natalia

Exploring the subnational inequality and heterogeneity of the impact of routine measles immunisation in Africa. (2022) Echeverria-Londono, Susy; Hartner, Anna-Maria; Li, Xiang; Roth, Jeremy; Portnoy, Allison; Sbarra, Alyssa N; Abbas, Kaja; Ferrari, Matthew; Fu, Han; Jit, Mark; Ferguson, Neil M; Gaythorpe, Katy AM

Interdisciplinary investigations of phage-bacteria dynamics and generalized transduction of antimicrobial resistance in Staphylococcus aureus. (2022) Leclerc, Q

Pregnancy during COVID-19: social contact patterns and vaccine coverage of pregnant women from CoMix in 19 European countries. (2022) Wong, Kerry LM; Gimma, Amy; Paixao, Enny S; CoMix Europe Working Group; Faes, Christel; Beutels, Philippe; Hens, Niel; Jarvis, Christopher I; Edmunds, W John

Viewing the global health system as a complex adaptive system - implications for research and practice. (2022) Borghi, Josephine; Ismail, Sharif; Hollway, James; Kim, Rakhyun E; Sturmberg, Joachim; Brown, Garrett; Mechler, Reinhard; Volmink, Heinrich; Spicer, Neil; Chalabi, Zaid; Cassidy, Rachel; Johnson, Jeff; Foss, Anna; Koduah, Augustina; Searle, Christa; Komendantova, Nadejda; Semwanga, Agnes; Moon, Suerie

Population disruption: observational study of changes in the population distribution of the UK during the COVID-19 pandemic. (2022) Gibbs, Hamish; Waterlow, Naomi R; Cheshire, James; Danon, Leon; Liu, Yang; Grundy, Chris; Kucharski, Adam J; Eggo, Rosalind M

Epidemiology of SARS-CoV-2 infection among staff and students in a cohort of English primary and secondary schools during 2020-2021. (2022) Hargreaves, James R; Langan, Sinéad M; Oswald, William E; Halliday, Katherine E; Sturgess, Joanna; Phelan, Jody; Nguipdop-Djomo, Patrick; Ford, Benjamin; Allen, Elizabeth; Sundaram, Neisha; Ireland, Georgina; Poh, John; Ijaz, Samreen; Diamond, Ian; Rourke, Emma; Dawe, Fiona; Judd, Alison; Warren-Gash, Charlotte; Clark, Taane G; Glynn, Judith R; Edmunds, W John; Bonell, Chris; Mangtani, Punam; Ladhani, Shamez N; COVID-19 Schools Infection Survey Study Group

Improving Estimates of Social Contact Patterns for Airborne Transmission of Respiratory Pathogens. (2022) McCreesh, Nicky; Mohlamonyane, Mbali; Edwards, Anita; Olivier, Stephen; Dikgale, Keabetswe; Dayi, Njabulo; Gareta, Dickman; Wood, Robin; Grant, Alison D; White, Richard G; Middelkoop, Keren

A consensus of evidence: The role of SPI-M-O in the UK COVID-19 response. (2022) Medley, Graham F

Feasibility of measles and rubella vaccination programmes for disease elimination: a modelling study. (2022) Winter, Amy K; Lambert, Brian; Klein, Daniel; Klepac, Petra; Papadopoulos, Timos; Truelove, Shaun; Burgess, Colleen; Santos, Heather; Knapp, Jennifer K; Reef, Susan E; Kayembe, Lidia K; Shendale, Stephanie; Kretsinger, Katrina; Lessler, Justin; Vynnycky, Emilia; McCarthy, Kevin; Ferrari, Matthew; Jit, Mark

September 2022

Heavy-tailed sexual contact networks and monkeypox epidemiology in the global outbreak, 2022. (2022) Endo, Akira; Murayama, Hiroaki; Abbott, Sam; Ratnayake, Ruwan; Pearson, Carl AB; Edmunds, W John; Fearon, Elizabeth; Funk, Sebastian

Maternity service reconfigurations for intrapartum and postnatal midwifery staffing shortages: modelling of low-risk births in England. (2022) Grollman, Christopher; Daniele, Marina AS; Brigante, Lia; Knight, Gwenan M; Latina, Laura; Morgan, Andrei S; Downe, Soo

Comparing human and model-based forecasts of COVID-19 in Germany and Poland. (2022) Bosse, Nikos I; Abbott, Sam; Bracher, Johannes; Hain, Habakuk; Quilty, Billy J; Jit, Mark; Centre for the Mathematical Modelling of Infectious Diseases COV; van Leeuwen, Edwin; Cori, Anne; Funk, Sebastian

Importance of ventilation and occupancy to Mycobacterium tuberculosis transmission rates in congregate settings. (2022) Deol, AK; Shaikh, N; Middelkoop, K; Mohlamonyane, M; White, RG; McCreesh, N

Immune Imprinting Drives Human Norovirus Potential for Global Spread. (2022) Lindesmith, Lisa C; Boshier, Florencia AT; Brewer-Jensen, Paul D; Roy, Sunando; Costantini, Veronica; Mallory, Michael L; Zweigart, Mark; May, Samantha R; Conrad, Helen; O'Reilly, Kathleen M; Kelly, Daniel; Celma, Cristina C; Beard, Stuart; Williams, Rachel; Tutill, Helena J; Becker Dreps, Sylvia; Bucardo, Filemón; Allen, David J; Vinjé, Jan; Goldstein, Richard A; Breuer, Judith; Baric, Ralph S

Inferring risks of coronavirus transmission from community household data. (2022) House, Thomas; Riley, Heather; Pellis, Lorenzo; Pouwels, Koen B; Bacon, Sebastian; Eidukas, Arturas; Jahanshahi, Kaveh; Eggo, Rosalind M; Sarah Walker, A

The association of COVID-19 incidence with temperature, humidity, and UV radiation - A global multi-city analysis. (2022) Nottmeyer, Luise; Armstrong, Ben; Lowe, Rachel; Abbott, Sam; Meakin, Sophie; O'Reilly, Kathleen M; von Borries, Rosa; Schneider, Rochelle; Royé, Dominic; Hashizume, Masahiro; Pascal, Mathilde; Tobias, Aurelio; Vicedo-Cabrera, Ana Maria; Lavigne, Eric; Correa, Patricia Matus; Ortega, Nicolás Valdés; Kynčl, Jan; Urban, Aleš; Orru, Hans; Ryti, Niilo; Jaakkola, Jouni; Dallavalle, Marco; Schneider, Alexandra; Honda, Yasushi; Ng, Chris Fook Sheng; Alahmad, Barrak; Carrasco-Escobar, Gabriel; Holobâc, Iulian Horia; Kim, Ho; Lee, Whanhee; Íñiguez, Carmen; Bell, Michelle L; Zanobetti, Antonella; Schwartz, Joel; Scovronick, Noah; Coélho, Micheline de Sousa Zanotti Stagliorio; Saldiva, Paulo Hilario Nascimento; Diaz, Magali Hurtado; Gasparrini, Antonio; Sera, Francesco

Public perceptions and interactions with UK COVID-19 Test, Trace and Isolate policies, and implications for pandemic infectious disease modelling. (2022) Marshall, Guy C; Skeva, Rigina; Jay, Caroline; Silva, Miguel EP; Fyles, Martyn; House, Thomas; Davis, Emma L; Pi, Li; Medley, Graham F; Quilty, Billy J; Dyson, Louise; Yardley, Lucy; Fearon, Elizabeth

Climate change and health in Southeast Asia - defining research priorities and the role of the Wellcome Trust Africa Asia Programmes. (2022) Choisy, Marc; McBride, Angela; Chambers, Mary; Ho Quang, Chanh; Nguyen Quang, Huy; Xuan Chau, Nguyen Thi; Thi, Giang Nguyen; Bonell, Ana; Evans, Megan; Ming, Damien; Ngo-Duc, Thanh; Quang Thai, Pham; Dang Giang, Duy Hoang; Dan Thanh, Ho Ngoc; Ngoc Nhung, Hoang; Lowe, Rachel; Maude, Richard; Elyazar, Iqbal; Surendra, Henry; Ashley, Elizabeth A; Thwaites, Louise; van Doorn, H Rogier; Kestelyn, Evelyne; Dondorp, Arjen M; Thwaites, Guy; Vinh Chau, Nguyen Van; Yacoub, Sophie

Climate change and health in Southeast Asia – defining research priorities and the role of the Wellcome Trust Africa Asia Programmes. (2022) Choisy, Marc; McBride, Angela; Chambers, Mary; Ho Quang, Chanh; Nguyen Quang, Huy; Xuan Chau, Nguyen Thi; Thi, Giang Nguyen; Bonell, Ana; Evans, Megan; Ming, Damien; Ngo-Duc, Thanh; Quang Thai, Pham; Dang Giang, Duy Hoang; Dan Thanh, Ho Ngoc; Ngoc Nhung, Hoang; Lowe, Rachel; Maude, Richard; Elyazar, Iqbal; Surendra, Henry; Ashley, Elizabeth A; Thwaites, Louise; van Doorn, H Rogier; Kestelyn, Evelyne; Dondorp, Arjen M; Thwaites, Guy; Vinh Chau, Nguyen Van; Yacoub, Sophie

Human papillomavirus vaccine effectiveness by number of doses: Updated systematic review of data from national immunization programs. (2022) Markowitz, Lauri E; Drolet, Mélanie; Lewis, Rayleen M; Lemieux-Mellouki, Philippe; Pérez, Norma; Jit, Mark; Brotherton, Julia M; Ogilvie, Gina; Kreimer, Aimée R; Brisson, Marc

Determinants of RSV epidemiology following suppression through pandemic contact restrictions. (2022) Koltai, Mihaly; Krauer, Fabienne; Hodgson, David; van Leeuwen, Edwin; Treskova-Schwarzbach, Marina; Jit, Mark; Flasche, Stefan

Social mixing patterns relevant to infectious diseases spread by close contact in urban Blantyre, Malawi. (2022) Thindwa, Deus; Jambo, Kondwani C; Ojal, John; MacPherson, Peter; Dennis Phiri, Mphatso; Pinsent, Amy; Khundi, McEwen; Chiume, Lingstone; Gallagher, Katherine E; Heyderman, Robert S; Corbett, Elizabeth L; French, Neil; Flasche, Stefan

Vaccine efficacy trials for Crimean-Congo haemorrhagic fever: Insights from modelling different epidemiological settings. (2022) Vesga, Juan F; Métras, Raphaelle; Clark, Madeleine HA; Ayazi, Edris; Apolloni, Andrea; Leslie, Toby; Msimang, Veerle; Thompson, Peter N; John Edmunds, W

Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. (2022) Endo 遠藤彰, Akira; CMMID COVID-19 Working Group; Uchida 内田満夫, Mitsuo; Liu 刘扬, Yang; Atkins, Katherine E; Kucharski, Adam J; Funk, Sebastian

A Bayesian modelling framework to quantify multiple sources of spatial variation for disease mapping. (2022) Lee, Sophie A; Economou, Theodoros; Lowe, Rachel

The prevalence of onchocerciasis in Africa and Yemen, 2000-2018: a geospatial analysis. (2022) Schmidt, Chris A; Cromwell, Elizabeth A; Hill, Elex; Donkers, Katie M; Schipp, Megan F; Johnson, Kimberly B; Pigott, David M; LBD 2019 Neglected Tropical Diseases Collaborators; Hay, Simon I

Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs. (2022) Villabona-Arenas, Christian Julian; Hué, Stéphane; Baxter, James AC; Hall, Matthew; Lythgoe, Katrina A; Bradley, John; Atkins, Katherine E

August 2022

Changes in Energy Consumption and Energy Intensity in EU Countries as a Result of the COVID-19 Pandemic by Sector and Area Economy. (2022) Rokicki, Tomasz; Jadczak, Radosław; Kucharski, Adam; Bórawski, Piotr; Bełdycka-Bórawska, Aneta; Szeberényi, András; Perkowska, Aleksandra

Estimating annual risk of infection with Mycobacterium tuberculosis. (2022) Dale, Katie D; Schwalb, Alvaro; Houben, Rein MGJ

Epidemiology of type 2 vaccine-derived poliovirus outbreaks between 2016 and 2020. (2022) Macklin, Grace R; Goel, Ajay K; Mach, Ondrej; Tallis, Graham; Ahmed, Jamal A; O'Reilly, Kathleen M; Grassly, Nicholas C; Diop, Ousmane M

Risk factors for pneumococcal carriage in adults living with HIV on antiretroviral therapy in the infant pneumococcal vaccine era in Malawi. (2022) Thindwa, Deus; Mwalukomo, Thandie S; Msefula, Jacquline; Jambo, Kondwani C; Brown, Comfort; Kamng'ona, Arox; Mwansambo, Charles; Ojal, John; Flasche, Stefan; French, Neil; Heyderman, Robert S; Swarthout, Todd D

Effect of pneumococcal conjugate vaccine on prevalence of otitis media with effusion among children in Vietnam. (2022) Toizumi, Michiko; Satoh, Chisei; Quilty, Billy J; Nguyen, Hien Anh Thi; Madaniyazi, Lina; Le, Lien Thuy; Ng, Chris Fook Sheng; Hara, Minoru; Iwasaki, Chihiro; Takegata, Mizuki; Kitamura, Noriko; Nation, Monica Larissa; Satzke, Catherine; Kumai, Yoshihiko; Do, Hung Thai; Bui, Minh Xuan; Mulholland, Kim; Flasche, Stefan; Dang, Duc Anh; Kaneko, Kenichi; Yoshida, Lay-Myint

Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era. (2022) Barnard, Rosanna C; Davies, Nicholas G; Centre for Mathematical Modelling of Infectious Diseases COVID-1; Jit, Mark; Edmunds, W John

Recording of 'COVID-19 vaccine declined': a cohort study on 57.9 million National Health Service patients' records in situ using OpenSAFELY, England, 8 December 2020 to 25 May 2021. (2022) Curtis, Helen J; Inglesby, Peter; MacKenna, Brian; Croker, Richard; Hulme, William J; Rentsch, Christopher T; Bhaskaran, Krishnan; Mathur, Rohini; Morton, Caroline E; Bacon, Sebastian Cj; Smith, Rebecca M; Evans, David; Mehrkar, Amir; Tomlinson, Laurie; Walker, Alex J; Bates, Christopher; Hickman, George; Ward, Tom; Morley, Jessica; Cockburn, Jonathan; Davy, Simon; Williamson, Elizabeth J; Eggo, Rosalind M; Parry, John; Hester, Frank; Harper, Sam; O'Hanlon, Shaun; Eavis, Alex; Jarvis, Richard; Avramov, Dima; Griffiths, Paul; Fowles, Aaron; Parkes, Nasreen; Evans, Stephen Jw; Douglas, Ian J; Smeeth, Liam; Goldacre, Ben

Dehydration Tolerance in Epidemic versus Nonepidemic MRSA Demonstrated by Isothermal Microcalorimetry. (2022) Baede, Valérie O; Tavakol, Mehri; Vos, Margreet C; Knight, Gwenan M; van Wamel, Willem JB; MACOTRA study group

Compositional modelling of immune response and virus transmission dynamics. (2022) Waites, W; Cavaliere, M; Danos, V; Datta, R; Eggo, RM; Hallett, TB; Manheim, D; Panovska-Griffiths, J; Russell, TW; Zarnitsyna, VI

Association between household composition and severe COVID-19 outcomes in older people by ethnicity: an observational cohort study using the OpenSAFELY platform. (2022) Wing, Kevin; Grint, Daniel J; Mathur, Rohini; Gibbs, Hamish P; Hickman, George; Nightingale, Emily; Schultze, Anna; Forbes, Harriet; Nafilyan, Vahé; Bhaskaran, Krishnan; Williamson, Elizabeth; House, Thomas; Pellis, Lorenzo; Herrett, Emily; Gautam, Nileesa; Curtis, Helen J; Rentsch, Christopher T; Wong, Angel YS; MacKenna, Brian; Mehrkar, Amir; Bacon, Seb; Douglas, Ian J; Evans, Stephen JW; Tomlinson, Laurie; Goldacre, Ben; Eggo, Rosalind M

Science in the time of COVID-19: Reflections on the UK Events Research Programme. (2022) Marteau, Theresa M; Parker, Michael J; Edmunds, W John

Optimal health and economic impact of non-pharmaceutical intervention measures prior and post vaccination in England: a mathematical modelling study. (2022) Tildesley, Michael J; Vassall, Anna; Riley, Steven; Jit, Mark; Sandmann, Frank; Hill, Edward M; Thompson, Robin N; Atkins, Benjamin D; Edmunds, John; Dyson, Louise; Keeling, Matt J

Quantifying the primary and secondary effects of antimicrobial resistance on surgery patients: Methods and data sources for empirical estimation in England. (2022) Naylor, Nichola R; Evans, Stephanie; Pouwels, Koen B; Troughton, Rachael; Lamagni, Theresa; Muller-Pebody, Berit; Knight, Gwenan M; Atun, Rifat; Robotham, Julie V

The United States COVID-19 Forecast Hub dataset. (2022) Cramer, Estee Y; Huang, Yuxin; Wang, Yijin; Ray, Evan L; Cornell, Matthew; Bracher, Johannes; Brennen, Andrea; Rivadeneira, Alvaro J Castro; Gerding, Aaron; House, Katie; Jayawardena, Dasuni; Kanji, Abdul Hannan; Khandelwal, Ayush; Le, Khoa; Mody, Vidhi; Mody, Vrushti; Niemi, Jarad; Stark, Ariane; Shah, Apurv; Wattanchit, Nutcha; Zorn, Martha W; Reich, Nicholas G; US COVID-19 Forecast Hub Consortium

Epidemiological impact and cost-effectiveness analysis of COVID-19 vaccination in Kenya. (2022) Orangi, Stacey; Ojal, John; Brand, Samuel Pc; Orlendo, Cameline; Kairu, Angela; Aziza, Rabia; Ogero, Morris; Agweyu, Ambrose; Warimwe, George M; Uyoga, Sophie; Otieno, Edward; Ochola-Oyier, Lynette I; Agoti, Charles N; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Ng'ang'a, Wangari; Adetifa, Ifedayo Mo; Scott, J Anthony G; Bejon, Philip; Keeling, Matt J; Flasche, Stefan; Nokes, D James; Barasa, Edwine

Effectiveness of CoronaVac and BNT162b2 COVID-19 mass vaccination in Colombia: A population-based cohort study. (2022) Paternina-Caicedo, Angel; Jit, Mark; Alvis-Guzmán, Nelson; Fernández, Juan Carlos; Hernández, José; Paz-Wilches, Justo Jesus; Rojas-Suarez, José; Dueñas-Castell, Carmelo; Alvis-Zakzuk, Nelson J; Smith, Adrian D; Hoz-Restrepo, Fernando De La

July 2022

Safety of COVID-19 vaccination and acute neurological events: A self-controlled case series in England using the OpenSAFELY platform. (2022) Walker, Jemma L; Schultze, Anna; Tazare, John; Tamborska, Arina; Singh, Bhagteshwar; Donegan, Katherine; Stowe, Julia; Morton, Caroline E; Hulme, William J; Curtis, Helen J; Williamson, Elizabeth J; Mehrkar, Amir; Eggo, Rosalind M; Rentsch, Christopher T; Mathur, Rohini; Bacon, Sebastian; Walker, Alex J; Davy, Simon; Evans, David; Inglesby, Peter; Hickman, George; MacKenna, Brian; Tomlinson, Laurie; Ca Green, Amelia; Fisher, Louis; Cockburn, Jonathan; Parry, John; Hester, Frank; Harper, Sam; Bates, Christopher; Evans, Stephen Jw; Solomon, Tom; Andrews, Nick J; Douglas, Ian J; Goldacre, Ben; Smeeth, Liam; McDonald, Helen I picture_as_pdf

Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa. (2022) Pujol-Hodge, Emma; Salazar-Gonzalez, Jesus F; Ssemwanga, Deogratius; Charlebois, Edwin D; Ayieko, James; Grant, Heather E; Liegler, Teri; Atkins, Katherine E; Kaleebu, Pontiano; Kamya, Moses R; Petersen, Maya; Havlir, Diane V; Leigh Brown, Andrew J

An analysis of 45 large-scale wastewater sites in England to estimate SARS-CoV-2 community prevalence. (2022) Morvan, Mario; Jacomo, Anna Lo; Souque, Celia; Wade, Matthew J; Hoffmann, Till; Pouwels, Koen; Lilley, Chris; Singer, Andrew C; Porter, Jonathan; Evens, Nicholas P; Walker, David I; Bunce, Joshua T; Engeli, Andrew; Grimsley, Jasmine; O'Reilly, Kathleen M; Danon, Leon

Integrating economic and health evidence to inform Covid-19 policy in low- and middle- income countries. (2022) Vassall, Anna; Sweeney, Sedona; Barasa, Edwine; Prinja, Shankar; Keogh-Brown, Marcus R; Tarp Jensen, Henning; Smith, Richard; Baltussen, Rob; M Eggo, Rosalind; Jit, Mark

"We've all got the virus inside us now": Disaggregating public health relations and responsibilities for health protection in pandemic London. (2022) Kasstan, Ben; Mounier-Jack, Sandra; Gaskell, Katherine M; Eggo, Rosalind M; Marks, Michael; Chantler, Tracey picture_as_pdf

Comparative effectiveness of ChAdOx1 versus BNT162b2 covid-19 vaccines in health and social care workers in England: cohort study using OpenSAFELY. (2022) Hulme, William J; Williamson, Elizabeth J; Green, Amelia CA; Bhaskaran, Krishnan; McDonald, Helen I; Rentsch, Christopher T; Schultze, Anna; Tazare, John; Curtis, Helen J; Walker, Alex J; Tomlinson, Laurie A; Palmer, Tom; Horne, Elsie MF; MacKenna, Brian; Morton, Caroline E; Mehrkar, Amir; Morley, Jessica; Fisher, Louis; Bacon, Sebastian CJ; Evans, David; Inglesby, Peter; Hickman, George; Davy, Simon; Ward, Tom; Croker, Richard; Eggo, Rosalind M; Wong, Angel YS; Mathur, Rohini; Wing, Kevin; Forbes, Harriet; Grint, Daniel J; Douglas, Ian J; Evans, Stephen JW; Smeeth, Liam; Bates, Chris; Cockburn, Jonathan; Parry, John; Hester, Frank; Harper, Sam; Sterne, Jonathan AC; Hernán, Miguel A; Goldacre, Ben

Effectiveness of a pay-it-forward intervention compared with user-paid vaccination to improve influenza vaccine uptake and community engagement among children and older adults in China: a quasi-experimental pragmatic trial. (2022) Wu, Dan; Jin, Chenqi; Bessame, Khaoula; Tang, Fanny Fong-Yi; Ong, Jason J; Wang, Zaisheng; Xie, Yewei; Jit, Mark; Larson, Heidi J; Chantler, Tracey; Lin, Leesa; Gong, Wenfeng; Yang, Fan; Jing, Fengshi; Wei, Shufang; Cheng, Weibin; Zhou, Yi; Ren, Nina; Qiu, Shuhao; Bao, Jianmin; Wen, Liufen; Yang, Qinlu; Tian, Junzhang; Tang, Weiming; Tucker, Joseph D picture_as_pdf

Population benefits of addressing programmatic and social determinants of gender disparities in tuberculosis in Viet Nam: A modelling study. (2022) Horton, Katherine C; White, Richard G; Hoa, Nguyen Binh; Nguyen, Hai Viet; Bakker, Roel; Sumner, Tom; Corbett, Elizabeth L; Houben, Rein MGJ

Effectiveness of case-area targeted interventions including vaccination on the control of epidemic cholera: protocol for a prospective observational study. (2022) Ratnayake, Ruwan; Peyraud, Nicolas; Ciglenecki, Iza; Gignoux, Etienne; Lightowler, Maria; Azman, Andrew S; Gakima, Primitive; Ouamba, Jean Patrick; Sagara, Joseph Amadomon; Ndombe, Rollin; Mimbu, Nana; Ascorra, Alexandra; Epicentre and MSF CATI Working Group; Welo, Placide Okitayemba; Mukamba Musenga, Elisabeth; Miwanda, Berthe; Boum, Yap; Checchi, Francesco; Edmunds, W John; Luquero, Francisco; Porten, Klaudia; Finger, Flavio

Describing the population experiencing COVID-19 vaccine breakthrough following second vaccination in England: a cohort study from OpenSAFELY. (2022) OpenSAFELY Collaborative; Green, Amelia; Curtis, Helen; Hulme, William; Williamson, Elizabeth; McDonald, Helen; Bhaskaran, Krishnan; Rentsch, Christopher; Schultze, Anna; MacKenna, Brian; Mahalingasivam, Viyaasan; Tomlinson, Laurie; Walker, Alex; Fisher, Louis; Massey, Jon; Andrews, Colm; Hopcroft, Lisa; Morton, Caroline; Croker, Richard; Morley, Jessica; Mehrkar, Amir; Bacon, Seb; Evans, David; Inglesby, Peter; Hickman, George; Ward, Tom; Davy, Simon; Mathur, Rohini; Tazare, John; Eggo, Rosalind; Wing, Kevin; Wong, Angel; Forbes, Harriet; Bates, Chris; Cockburn, Jonathan; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian; Evans, Stephen; Smeeth, Liam; Goldacre, Ben

Risk of severe COVID-19 outcomes associated with immune-mediated inflammatory diseases and immune-modifying therapies: a nationwide cohort study in the OpenSAFELY platform. (2022) MacKenna, Brian; Kennedy, Nicholas A; Mehrkar, Amir; Rowan, Anna; Galloway, James; Matthewman, Julian; Mansfield, Kathryn E; Bechman, Katie; Yates, Mark; Brown, Jeremy; Schultze, Anna; Norton, Sam; Walker, Alex J; Morton, Caroline E; Harrison, David; Bhaskaran, Krishnan; Rentsch, Christopher T; Williamson, Elizabeth; Croker, Richard; Bacon, Seb; Hickman, George; Ward, Tom; Davy, Simon; Green, Amelia; Fisher, Louis; Hulme, William; Bates, Chris; Curtis, Helen J; Tazare, John; Eggo, Rosalind M; Evans, David; Inglesby, Peter; Cockburn, Jonathan; McDonald, Helen I; Tomlinson, Laurie A; Mathur, Rohini; Wong, Angel YS; Forbes, Harriet; Parry, John; Hester, Frank; Harper, Sam; Douglas, Ian J; Smeeth, Liam; Lees, Charlie W; Evans, Stephen JW; Goldacre, Ben; Smith, Catherine H; Langan, Sinéad M

Comparing trained and untrained probabilistic ensemble forecasts of COVID-19 cases and deaths in the United States. (2022) Ray, Evan L; Brooks, Logan C; Bien, Jacob; Biggerstaff, Matthew; Bosse, Nikos I; Bracher, Johannes; Cramer, Estee Y; Funk, Sebastian; Gerding, Aaron; Johansson, Michael A; Rumack, Aaron; Wang, Yijin; Zorn, Martha; Tibshirani, Ryan J; Reich, Nicholas G

June 2022

End-point definition and trial design to advance tuberculosis vaccine development. (2022) Garcia-Basteiro, Alberto L; White, Richard G; Tait, Dereck; Schmidt, Alexander C; Rangaka, Molebogeng X; Quaife, Matthew; Nemes, Elisa; Mogg, Robin; Hill, Philip C; Harris, Rebecca C; Hanekom, Willem A; Frick, Mike; Fiore-Gartland, Andrew; Evans, Tom; Dagnew, Alemnew F; Churchyard, Gavin; Cobelens, Frank; Behr, Marcel A; Hatherill, Mark

Evidence for influenza and RSV interaction from 10 years of enhanced surveillance in Nha Trang, Vietnam, a modelling study. (2022) Waterlow, Naomi R; Toizumi, Michiko; van Leeuwen, Edwin; Thi Nguyen, Hien-Anh; Myint-Yoshida, Lay; Eggo, Rosalind M; Flasche, Stefan

Tailoring immunisation programmes in a time of SARS-CoV-2: What can be learnt by comparing the findings of childhood and COVID-19 vaccine evaluation studies in an underserved population? (2022) Kasstan, Ben; Letley, Louise; Mounier-Jack, Sandra; Klynman, Nicole; Gaskell, Katherine M; Eggo, Rosalind M; Marks, Michael; Chantler, Tracey picture_as_pdf

The importance of fine-scale predictors of wild boar habitat use in an isolated population. (2022) Bacigalupo, Sonny A; Chang, Yu-Mei; Dixon, Linda K; Gubbins, Simon; Kucharski, Adam J; Drewe, Julian A

The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020. (2022) Knight, Gwenan M; Pham, Thi Mui; Stimson, James; Funk, Sebastian; Jafari, Yalda; Pople, Diane; Evans, Stephanie; Yin, Mo; Brown, Colin S; Bhattacharya, Alex; Hope, Russell; Semple, Malcolm G; ISARIC4C Investigators; CMMID COVID-19 Working Group; Read, Jonathan M; Cooper, Ben S; Robotham, Julie V

The importance of the generation interval in investigating dynamics and control of new SARS-CoV-2 variants. (2022) Park, Sang Woo; Bolker, Benjamin M; Funk, Sebastian; Metcalf, C Jessica E; Weitz, Joshua S; Grenfell, Bryan T; Dushoff, Jonathan

Estimating the duration of antibody positivity and likely time of Leptospira infection using data from a cross-sectional serological study in Fiji. (2022) Rees, Eleanor M; Lau, Colleen L; Kama, Mike; Reid, Simon; Lowe, Rachel; Kucharski, Adam J

Risk factors for SARS-CoV-2 seroprevalence following the first pandemic wave in UK healthcare workers in a large NHS Foundation Trust. (2022) Colton, Hayley; Hodgson, David; Hornsby, Hailey; Brown, Rebecca; Mckenzie, Joanne; Bradley, Kirsty L; James, Cameron; Lindsey, Benjamin B; Birch, Sarah; Marsh, Louise; Wood, Steven; Bayley, Martin; Dickson, Gary; James, David C; Nicklin, Martin J; Sayers, Jon R; Zafred, Domen; Rowland-Jones, Sarah L; Kudesia, Goura; Kucharski, Adam; CMMID COVID-19 Working Group; Darton, Thomas C; de Silva, Thushan I; Collini, Paul J

Additional considerations for assessing COVID-19 impact on dengue transmission - Authors' reply. (2022) Brady, Oliver J; Tian, Huaiyu

Tuberculosis prevalence: beyond the tip of the iceberg. (2022) Houben, Rein MGJ; Esmail, Hanif; Cobelens, Frank; Williams, Caroline ML; Coussens, Anna K

Long COVID burden and risk factors in 10 UK longitudinal studies and electronic health records. (2022) Thompson, Ellen J; Williams, Dylan M; Walker, Alex J; Mitchell, Ruth E; Niedzwiedz, Claire L; Yang, Tiffany C; Huggins, Charlotte F; Kwong, Alex SF; Silverwood, Richard J; Di Gessa, Giorgio; Bowyer, Ruth CE; Northstone, Kate; Hou, Bo; Green, Michael J; Dodgeon, Brian; Doores, Katie J; Duncan, Emma L; Williams, Frances MK; OpenSAFELY Collaborative; Steptoe, Andrew; Porteous, David J; McEachan, Rosemary RC; Tomlinson, Laurie; Goldacre, Ben; Patalay, Praveetha; Ploubidis, George B; Katikireddi, Srinivasa Vittal; Tilling, Kate; Rentsch, Christopher T; Timpson, Nicholas J; Chaturvedi, Nishi; Steves, Claire J

Vaccine equity in low and middle income countries: a systematic review and meta-analysis. (2022) Ali, Huda Ahmed; Hartner, Anna-Maria; Echeverria-Londono, Susy; Roth, Jeremy; Li, Xiang; Abbas, Kaja; Portnoy, Allison; Vynnycky, Emilia; Woodruff, Kim; Ferguson, Neil M; Toor, Jaspreet; Gaythorpe, Katy Am

May 2022

Association of pneumococcal carriage in infants with the risk of carriage among their contacts in Nha Trang, Vietnam: A nested cross-sectional survey. (2022) Qian, George; Toizumi, Michiko; Clifford, Sam; Le, Lien Thuy; Papastylianou, Tasos; Satzke, Catherine; Quilty, Billy; Iwasaki, Chihiro; Kitamura, Noriko; Takegata, Mizuki; Bui, Minh Xuan; Nguyen, Hien Anh Thi; Dang, Duc Anh; van Hoek, Albert Jan; Yoshida, Lay Myint; Flasche, Stefan

COVID-19 impact on routine immunisations for vaccine-preventable diseases: Projecting the effect of different routes to recovery. (2022) Toor, Jaspreet; Li, Xiang; Jit, Mark; Trotter, Caroline L; Echeverria-Londono, Susy; Hartner, Anna-Maria; Roth, Jeremy; Portnoy, Allison; Abbas, Kaja; Ferguson, Neil M; Am Gaythorpe, Katy

SCoVMod – a spatially explicit mobility and deprivation adjusted model of first wave COVID-19 transmission dynamics. (2022) Banks, Christopher J; Colman, Ewan; Doherty, Thomas; Tearne, Oliver; Arnold, Mark; Atkins, Katherine E; Balaz, Daniel; Beaunée, Gaël; Bessell, Paul R; Enright, Jessica; Kleczkowski, Adam; Rossi, Gianluigi; Ruget, Anne-Sophie; Kao, Rowland R

Measuring the unknown: An estimator and simulation study for assessing case reporting during epidemics. (2022) Jarvis, Christopher I; Gimma, Amy; Finger, Flavio; Morris, Tim P; Thompson, Jennifer A; le Polain de Waroux, Olivier; Edmunds, W John; Funk, Sebastian; Jombart, Thibaut

Transmission dynamics and vaccination strategies for Crimean-Congo haemorrhagic fever virus in Afghanistan: A modelling study. (2022) Vesga, Juan F; Clark, Madeleine HA; Ayazi, Edris; Apolloni, Andrea; Leslie, Toby; Edmunds, W John; Métras, Raphaёlle

Transmission dynamics of SARS-CoV-2 in a strictly-Orthodox Jewish community in the UK. (2022) Waites, William; Pearson, Carl AB; Gaskell, Katherine M; House, Thomas; Pellis, Lorenzo; Johnson, Marina; Gould, Victoria; Hunt, Adam; Stone, Neil RH; Kasstan, Ben; Chantler, Tracey; Lal, Sham; Roberts, Chrissy H; Goldblatt, David; CMMID COVID-19 Working Group; Marks, Michael; Eggo, Rosalind M picture_as_pdf

The impact of COVID-19 vaccination in prisons in England and Wales: a metapopulation model. (2022) McCarthy, Ciara V; O'Mara, Oscar; van Leeuwen, Edwin; CMMID COVID-19 Working Group; Jit, Mark; Sandmann, Frank

Mathematical Modelling for Optimal Vaccine Dose Finding: Maximising Efficacy and Minimising Toxicity. (2022) Benest, John; Rhodes, Sophie; Evans, Thomas G; White, Richard G

Now or later: Health impacts of delaying single-dose HPV vaccine implementation in a high-burden setting. (2022) Burger, Emily A; Laprise, Jean-François; Sy, Stephen; Regan, Mary Caroline; Prem, Kiesha; Jit, Mark; Brisson, Marc; Kim, Jane J

Combining rapid diagnostic tests to estimate primary and post-primary dengue immune status at the point of care. (2022) Biggs, Joseph R; Sy, Ava Kristy; Ashall, James; Santoso, Marsha S; Brady, Oliver J; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Tandoc, Amadou O; Sucaldito, Nemia L; Mai, Huynh Kim; Lien, Le Thuy; Thai, Hung Do; Nguyen, Hien Anh Thi; Anh, Dang Duc; Iwasaki, Chihiro; Kitamura, Noriko; Van Loock, Marnix; Herrera-Taracena, Guillermo; Menten, Joris; Rasschaert, Freya; Van Wesenbeeck, Liesbeth; Masyeni, Sri; Haryanto, Sotianingsih; Yohan, Benediktus; Cutiongco-de la Paz, Eva; Yoshida, Lay-Myint; Hue, Stephane; Rosario Z Capeding, Maria; Padilla, Carmencita D; Sasmono, R Tedjo; Hafalla, Julius Clemence R; Hibberd, Martin L

Triadic partnerships: Evaluation of a group mentorship scheme. (2022) Foss, Anna M; Kohler, Sophia; Kulkarni, Sumedh; Sutton, Natalina; Schreiner, Mary-Ann; Centemero, Nicolò Saverio; Mambula, Grace; Lohman, Diederik; Smith, Sarah C; French, Rebecca

April 2022

Group B streptococcus infection during pregnancy and infancy: estimates of regional and global burden. (2022) Gonçalves, Bronner P; Procter, Simon R; Paul, Proma; Chandna, Jaya; Lewin, Alexandra; Seedat, Farah; Koukounari, Artemis; Dangor, Ziyaad; Leahy, Shannon; Santhanam, Sridhar; John, Hima B; Bramugy, Justina; Bardají, Azucena; Abubakar, Amina; Nasambu, Carophine; Libster, Romina; Sánchez Yanotti, Clara; Horváth-Puhó, Erzsébet; Sørensen, Henrik T; van de Beek, Diederik; Bijlsma, Merijn W; Gardner, William M; Kassebaum, Nicholas; Trotter, Caroline; Bassat, Quique; Madhi, Shabir A; Lambach, Philipp; Jit, Mark; Lawn, Joy E; GBS Danish and Dutch collaborative group for long term outcomes; GBS Low and Middle Income Countries collaborative group for long; GBS Scientific Advisory Group, epidemiological sub-group; CHAMPS team

Growth-Dependent Predation and Generalized Transduction of Antimicrobial Resistance by Bacteriophage. (2022) Leclerc, Quentin J; Wildfire, Jacob; Gupta, Arya; Lindsay, Jodi A; Knight, Gwenan M

Updating age-specific contact structures to match evolving demography in a dynamic mathematical model of tuberculosis vaccination. (2022) Weerasuriya, Chathika Krishan; Harris, Rebecca Claire; McQuaid, Christopher Finn; Gomez, Gabriela B; White, Richard G

Using high-resolution contact networks to evaluate SARS-CoV-2 transmission and control in large-scale multi-day events. (2022) Pung, Rachael; Firth, Josh A; Spurgin, Lewis G; Singapore CruiseSafe working group; CMMID COVID-19 working group; Lee, Vernon J; Kucharski, Adam J

Dosing interval strategies for two-dose COVID-19 vaccination in 13 middle-income countries of Europe: Health impact modelling and benefit-risk analysis. (2022) Liu, Yang; Pearson, Carl AB; Sandmann, Frank G; Barnard, Rosanna C; Kim, Jong-Hoon; CMMID COVID-19 Working Group; Flasche, Stefan; Jit, Mark; Abbas, Kaja

The local burden of disease during the first wave of the COVID-19 epidemic in England: estimation using different data sources from changing surveillance practices. (2022) Nightingale, Emily S; Abbott, Sam; Russell, Timothy W; CMMID Covid-19 Working Group; Lowe, Rachel; Medley, Graham F; Brady, Oliver J

Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States. (2022) Cramer, Estee Y; Ray, Evan L; Lopez, Velma K; Bracher, Johannes; Brennen, Andrea; Castro Rivadeneira, Alvaro J; Gerding, Aaron; Gneiting, Tilmann; House, Katie H; Huang, Yuxin; Jayawardena, Dasuni; Kanji, Abdul H; Khandelwal, Ayush; Le, Khoa; Mühlemann, Anja; Niemi, Jarad; Shah, Apurv; Stark, Ariane; Wang, Yijin; Wattanachit, Nutcha; Zorn, Martha W; Gu, Youyang; Jain, Sansiddh; Bannur, Nayana; Deva, Ayush; Kulkarni, Mihir; Merugu, Srujana; Raval, Alpan; Shingi, Siddhant; Tiwari, Avtansh; White, Jerome; Abernethy, Neil F; Woody, Spencer; Dahan, Maytal; Fox, Spencer; Gaither, Kelly; Lachmann, Michael; Meyers, Lauren Ancel; Scott, James G; Tec, Mauricio; Srivastava, Ajitesh; George, Glover E; Cegan, Jeffrey C; Dettwiller, Ian D; England, William P; Farthing, Matthew W; Hunter, Robert H; Lafferty, Brandon; Linkov, Igor; Mayo, Michael L; Parno, Matthew D; Rowland, Michael A; Trump, Benjamin D; Zhang-James, Yanli; Chen, Samuel; Faraone, Stephen V; Hess, Jonathan; Morley, Christopher P; Salekin, Asif; Wang, Dongliang; Corsetti, Sabrina M; Baer, Thomas M; Eisenberg, Marisa C; Falb, Karl; Huang, Yitao; Martin, Emily T; McCauley, Ella; Myers, Robert L; Schwarz, Tom; Sheldon, Daniel; Gibson, Graham Casey; Yu, Rose; Gao, Liyao; Ma, Yian; Wu, Dongxia; Yan, Xifeng; Jin, Xiaoyong; Wang, Yu-Xiang; Chen, YangQuan; Guo, Lihong; Zhao, Yanting; Gu, Quanquan; Chen, Jinghui; Wang, Lingxiao; Xu, Pan; Zhang, Weitong; Zou, Difan; Biegel, Hannah; Lega, Joceline; McConnell, Steve; Nagraj, VP; Guertin, Stephanie L; Hulme-Lowe, Christopher; Turner, Stephen D; Shi, Yunfeng; Ban, Xuegang; Walraven, Robert; Hong, Qi-Jun; Kong, Stanley; van de Walle, Axel; Turtle, James A; Ben-Nun, Michal; Riley, Steven; Riley, Pete; Koyluoglu, Ugur; DesRoches, David; Forli, Pedro; Hamory, Bruce; Kyriakides, Christina; Leis, Helen; Milliken, John; Moloney, Michael; Morgan, James; Nirgudkar, Ninad; Ozcan, Gokce; Piwonka, Noah; Ravi, Matt; Schrader, Chris; Shakhnovich, Elizabeth; Siegel, Daniel; Spatz, Ryan; Stiefeling, Chris; Wilkinson, Barrie; Wong, Alexander; Cavany, Sean; España, Guido; Moore, Sean; Oidtman, Rachel; Perkins, Alex; Kraus, David; Kraus, Andrea; Gao, Zhifeng; Bian, Jiang; Cao, Wei; Lavista Ferres, Juan; Li, Chaozhuo; Liu, Tie-Yan; Xie, Xing; Zhang, Shun; Zheng, Shun; Vespignani, Alessandro; Chinazzi, Matteo; Davis, Jessica T; Mu, Kunpeng; Pastore Y Piontti, Ana; Xiong, Xinyue; Zheng, Andrew; Baek, Jackie; Farias, Vivek; Georgescu, Andreea; Levi, Retsef; Sinha, Deeksha; Wilde, Joshua; Perakis, Georgia; Bennouna, Mohammed Amine; Nze-Ndong, David; Singhvi, Divya; Spantidakis, Ioannis; Thayaparan, Leann; Tsiourvas, Asterios; Sarker, Arnab; Jadbabaie, Ali; Shah, Devavrat; Della Penna, Nicolas; Celi, Leo A; Sundar, Saketh; Wolfinger, Russ; Osthus, Dave; Castro, Lauren; Fairchild, Geoffrey; Michaud, Isaac; Karlen, Dean; Kinsey, Matt; Mullany, Luke C; Rainwater-Lovett, Kaitlin; Shin, Lauren; Tallaksen, Katharine; Wilson, Shelby; Lee, Elizabeth C; Dent, Juan; Grantz, Kyra H; Hill, Alison L; Kaminsky, Joshua; Kaminsky, Kathryn; Keegan, Lindsay T; Lauer, Stephen A; Lemaitre, Joseph C; Lessler, Justin; Meredith, Hannah R; Perez-Saez, Javier; Shah, Sam; Smith, Claire P; Truelove, Shaun A; Wills, Josh; Marshall, Maximilian; Gardner, Lauren; Nixon, Kristen; Burant, John C; Wang, Lily; Gao, Lei; Gu, Zhiling; Kim, Myungjin; Li, Xinyi; Wang, Guannan; Wang, Yueying; Yu, Shan; Reiner, Robert C; Barber, Ryan; Gakidou, Emmanuela; Hay, Simon I; Lim, Steve; Murray, Chris; Pigott, David; Gurung, Heidi L; Baccam, Prasith; Stage, Steven A; Suchoski, Bradley T; Prakash, B Aditya; Adhikari, Bijaya; Cui, Jiaming; Rodríguez, Alexander; Tabassum, Anika; Xie, Jiajia; Keskinocak, Pinar; Asplund, John; Baxter, Arden; Oruc, Buse Eylul; Serban, Nicoleta; Arik, Sercan O; Dusenberry, Mike; Epshteyn, Arkady; Kanal, Elli; Le, Long T; Li, Chun-Liang; Pfister, Tomas; Sava, Dario; Sinha, Rajarishi; Tsai, Thomas; Yoder, Nate; Yoon, Jinsung; Zhang, Leyou; Abbott, Sam; Bosse, Nikos I; Funk, Sebastian; Hellewell, Joel; Meakin, Sophie R; Sherratt, Katharine; Zhou, Mingyuan; Kalantari, Rahi; Yamana, Teresa K; Pei, Sen; Shaman, Jeffrey; Li, Michael L; Bertsimas, Dimitris; Skali Lami, Omar; Soni, Saksham; Tazi Bouardi, Hamza; Ayer, Turgay; Adee, Madeline; Chhatwal, Jagpreet; Dalgic, Ozden O; Ladd, Mary A; Linas, Benjamin P; Mueller, Peter; Xiao, Jade; Wang, Yuanjia; Wang, Qinxia; Xie, Shanghong; Zeng, Donglin; Green, Alden; Bien, Jacob; Brooks, Logan; Hu, Addison J; Jahja, Maria; McDonald, Daniel; Narasimhan, Balasubramanian; Politsch, Collin; Rajanala, Samyak; Rumack, Aaron; Simon, Noah; Tibshirani, Ryan J; Tibshirani, Rob; Ventura, Valerie; Wasserman, Larry; O'Dea, Eamon B; Drake, John M; Pagano, Robert; Tran, Quoc T; Ho, Lam Si Tung; Huynh, Huong; Walker, Jo W; Slayton, Rachel B; Johansson, Michael A; Biggerstaff, Matthew; Reich, Nicholas G

Mind the gap - Managing tuberculosis across the disease spectrum. (2022) Esmail, Hanif; Macpherson, Liana; Coussens, Anna K; Houben, Rein MGJ

The allocation of COVID-19 vaccines and antivirals against emerging SARS-CoV-2 variants of concern in East Asia and Pacific region: A modelling study. (2022) Leung, Kathy; Jit, Mark; Leung, Gabriel M; Wu, Joseph T

Estimating the contribution of transmission in primary healthcare clinics to community-wide TB disease incidence, and the impact of infection prevention and control interventions, in KwaZulu-Natal, South Africa. (2022) McCreesh, Nicky; Karat, Aaron S; Govender, Indira; Baisley, Kathy; Diaconu, Karin; Yates, Tom A; Houben, Rein Mgj; Kielmann, Karina; Grant, Alison D; White, Richard

Impact of non-pharmaceutical interventions on SARS-CoV-2 outbreaks in English care homes: a modelling study. (2022) Rosello, Alicia; Barnard, Rosanna C; Smith, David RM; Evans, Stephanie; Grimm, Fiona; Davies, Nicholas G; Centre for Mathematical Modelling of Infectious Diseases COVID-1; Deeny, Sarah R; Knight, Gwenan M; Edmunds, W John

Neurodevelopmental and growth outcomes after invasive Group B Streptococcus in early infancy: A multi-country matched cohort study in South Africa, Mozambique, India, Kenya, and Argentina. (2022) Paul, Proma; Chandna, Jaya; Procter, Simon R; Dangor, Ziyaad; Leahy, Shannon; Santhanam, Sridhar; John, Hima B; Bassat, Quique; Bramugy, Justina; Bardají, Azucena; Abubakar, Amina; Nasambu, Carophine; Libster, Romina; Yanotti, Clara Sánchez; Seedat, Farah; Horváth-Puhó, Erzsébet; Hossain, AKM Tanvir; Sadeq-Ur Rahman, Qazi; Jit, Mark; Newton, Charles R; Milner, Kate; Gonçalves, Bronner P; Lawn, Joy E; GBS long term outcomes LMIC collaborative group

March 2022

Sensitivity Analysis of a Transmission Interruption Model for the Soil-Transmitted Helminth Infections in Kenya. (2022) Okoyo, Collins; Onyango, Nelson; Orowe, Idah; Mwandawiro, Charles; Medley, Graham

The influence of risk perceptions on close contact frequency during the SARS-CoV-2 pandemic. (2022) Wambua, James; Hermans, Lisa; Coletti, Pietro; Verelst, Frederik; Willem, Lander; Jarvis, Christopher I; Gimma, Amy; Wong, Kerry LM; Lajot, Adrien; Demarest, Stefaan; Edmunds, W John; Faes, Christel; Beutels, Philippe; Hens, Niel

Effective surveillance of variants. (2022) Kucharski, Adam J; Cohen, Cheryl

Advancing Mathematical Models of Mycobacterium tuberculosis Transmission to Support Vaccine Introduction. (2022) Weerasuriya, CK

Social determinants of the changing tuberculosis prevalence in Việt Nam: Analysis of population-level cross-sectional studies. (2022) Foster, Nicola; Nguyen, Hai V; Nguyen, Nhung V; Nguyen, Hoa B; Tiemersma, Edine W; Cobelens, Frank GJ; Quaife, Matthew; Houben, Rein MGJ

Geo-Spatial Characteristics of 567 Places of Tick-Borne Encephalitis Infection in Southern Germany, 2018-2020. (2022) Friedsam, Amelie M; Brady, Oliver J; Pilic, Antonia; Dobler, Gerhard; Hellenbrand, Wiebke; Nygren, Teresa M

Comparative analysis of the risks of hospitalisation and death associated with SARS-CoV-2 omicron (B.1.1.529) and delta (B.1.617.2) variants in England: a cohort study. (2022) Nyberg, Tommy; Ferguson, Neil M; Nash, Sophie G; Webster, Harriet H; Flaxman, Seth; Andrews, Nick; Hinsley, Wes; Bernal, Jamie Lopez; Kall, Meaghan; Bhatt, Samir; Blomquist, Paula; Zaidi, Asad; Volz, Erik; Aziz, Nurin Abdul; Harman, Katie; Funk, Sebastian; Abbott, Sam; COVID-19 Genomics UK (COG-UK) consortium; Hope, Russell; Charlett, Andre; Chand, Meera; Ghani, Azra C; Seaman, Shaun R; Dabrera, Gavin; De Angelis, Daniela; Presanis, Anne M; Thelwall, Simon

The impact of local vaccine coverage and recent incidence on measles transmission in France between 2009 and 2018. (2022) Robert, Alexis; Kucharski, Adam J; Funk, Sebastian

Differential health impact of intervention programs for time-varying disease risk: a measles vaccination modeling study. (2022) Portnoy, Allison; Hsieh, Yuli Lily; Abbas, Kaja; Klepac, Petra; Santos, Heather; Brenzel, Logan; Jit, Mark; Ferrari, Matthew

WHO-led consensus statement on vaccine delivery costing: process, methods, and findings. (2022) Levin, Ann; Boonstoppel, Laura; Brenzel, Logan; Griffiths, Ulla; Hutubessy, Raymond; Jit, Mark; Mogasale, Vittal; Pallas, Sarah; Resch, Stephen; Suharlim, Christian; Yeung, Karene Hoi Ting

Protocol for a phase 3 trial to evaluate the effectiveness and safety of a heterologous, two-dose vaccine for Ebola virus disease in the Democratic Republic of the Congo. (2022) Watson-Jones, Deborah; Kavunga-Membo, Hugo; Grais, Rebecca F; Ahuka, Steve; Roberts, Natalie; Edmunds, W John; Choi, Edward M; Roberts, Chrissy H; Edwards, Tansy; Camacho, Anton; Lees, Shelley; Leyssen, Maarten; Spiessens, Bart; Luhn, Kerstin; Douoguih, Macaya; Hatchett, Richard; Bausch, Daniel G; Muyembe, Jean-Jacques; DRC-EB-001 protocol writing team

RESIST2: Interventions. (2022) Knight, Gwen

RESIST2: Policy. (2022) Knight, Gwen

RESIST2: Transmission. (2022) Knight, Gwen

RESIST2: Within-Host. (2022) Knight, Gwen

Long-Term Health-Related Quality of Life in Non-Hospitalized Coronavirus Disease 2019 (COVID-19) Cases With Confirmed Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection in England: Longitudinal Analysis and Cross-Sectional Comparison With Controls. (2022) Sandmann, Frank G; Tessier, Elise; Lacy, Joanne; Kall, Meaghan; Van Leeuwen, Edwin; Charlett, Andre; Eggo, Rosalind M; Dabrera, Gavin; Edmunds, W John; Ramsay, Mary; Campbell, Helen; Amirthalingam, Gayatri; Jit, Mark

Measuring the effects of COVID-19-related disruption on dengue transmission in southeast Asia and Latin America: a statistical modelling study. (2022) Chen, Yuyang; Li, Naizhe; Lourenço, José; Wang, Lin; Cazelles, Bernard; Dong, Lu; Li, Bingying; Liu, Yang; Jit, Mark; Bosse, Nikos I; Abbott, Sam; Velayudhan, Raman; Wilder-Smith, Annelies; Tian, Huaiyu; Brady, Oliver J; CMMID COVID-19 Working Group

The impact of 10-valent pneumococcal vaccine introduction on invasive disease in Fiji. (2022) Reyburn, R; Tuivaga, EJ; Ratu, FT; Dunne, EM; Nand, D; Kado, J; Jenkins, K; Tikoduadua, L; Jenney, A; Howden, BP; Ballard, SA; Fox, K; Devi, R; Satzke, C; Rafai, E; Kama, M; Flasche, S; Mulholland, EK; Russell, FM

Mortality among Care Home Residents in England during the first and second waves of the COVID-19 pandemic: an observational study of 4.3 million adults over the age of 65. (2022) Schultze, Anna; Nightingale, Emily; Evans, David; Hulme, William; Rosello, Alicia; Bates, Chris; Cockburn, Jonathan; MacKenna, Brian; Curtis, Helen J; Morton, Caroline E; Croker, Richard; Bacon, Seb; McDonald, Helen I; Rentsch, Christopher T; Bhaskaran, Krishnan; Mathur, Rohini; Tomlinson, Laurie A; Williamson, Elizabeth J; Forbes, Harriet; Tazare, John; Grint, Daniel; Walker, Alex J; Inglesby, Peter; DeVito, Nicholas J; Mehrkar, Amir; Hickman, George; Davy, Simon; Ward, Tom; Fisher, Louis; Green, Amelia Ca; Wing, Kevin; Wong, Angel Ys; McManus, Robert; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Douglas, Ian J; Smeeth, Liam; Eggo, Rosalind M; Goldacre, Ben; Leon, David A

Correction to: The epidemiologic impact and cost-effectiveness of new tuberculosis vaccines on multidrug-resistant tuberculosis in India and China. (2022) Weerasuriya, Chathika K; Harris, Rebecca C; McQuaid, C Finn; Bozzani, Fiammetta; Ruan, Yunzhou; Li, Renzhong; Li, Tao; Rade, Kirankumar; Rao, Raghuram; Ginsberg, Ann M; Gomez, Gabriela B; White, Richard G

Changes in social contacts in England during the COVID-19 pandemic between March 2020 and March 2021 as measured by the CoMix survey: A repeated cross-sectional study. (2022) Gimma, Amy; Munday, James D; Wong, Kerry LM; Coletti, Pietro; van Zandvoort, Kevin; Prem, Kiesha; CMMID COVID-19 working group; Klepac, Petra; Rubin, G James; Funk, Sebastian; Edmunds, W John; Jarvis, Christopher I

February 2022

Comparison of methods for predicting COVID-19-related death in the general population using the OpenSAFELY platform. (2022) OpenSAFELY Collaborative; Williamson, Elizabeth J; Tazare, John; Bhaskaran, Krishnan; McDonald, Helen I; Walker, Alex J; Tomlinson, Laurie; Wing, Kevin; Bacon, Sebastian; Bates, Chris; Curtis, Helen J; Forbes, Harriet J; Minassian, Caroline; Morton, Caroline E; Nightingale, Emily; Mehrkar, Amir; Evans, David; Nicholson, Brian D; Leon, David A; Inglesby, Peter; MacKenna, Brian; Davies, Nicholas G; DeVito, Nicholas J; Drysdale, Henry; Cockburn, Jonathan; Hulme, William J; Morley, Jessica; Douglas, Ian; Rentsch, Christopher T; Mathur, Rohini; Wong, Angel; Schultze, Anna; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Grieve, Richard; Harrison, David A; Steyerberg, Ewout W; Eggo, Rosalind M; Diaz-Ordaz, Karla; Keogh, Ruth; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben picture_as_pdf

Comparative assessment of methods for short-term forecasts of COVID-19 hospital admissions in England at the local level. (2022) Meakin, Sophie; Abbott, Sam; Bosse, Nikos; Munday, James; Gruson, Hugo; Hellewell, Joel; Sherratt, Katharine; CMMID COVID-19 Working Group; Funk, Sebastian

Date of introduction and epidemiologic patterns of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020. (2022) Koltai, Mihaly; Warsame, Abdihamid; Bashiir, Farah; Freemantle, Terri; Reeve, Chris; Williams, Chris; Jit, Mark; Flasche, Stefan; Davies, Nicholas G; Aweis, Ahmed; Ahmed, Mohamed; Dalmar, Abdirisak; Checchi, Francesco

Localising vaccination services: Qualitative insights on public health and minority group collaborations to co-deliver coronavirus vaccines. (2022) Kasstan, Ben; Mounier-Jack, Sandra; Letley, Louise; Gaskell, Katherine M; Roberts, Chrissy H; Stone, Neil RH; Lal, Sham; Eggo, Rosalind M; Marks, Michael; Chantler, Tracey picture_as_pdf

Inference is bliss: Simulation for power estimation for an observational study of a cholera outbreak intervention. (2022) Ratnayake, Ruwan; Checchi, Francesco; Jarvis, Christopher I; Edmunds, W John; Finger, Flavio

Association between oral anticoagulants and COVID-19-related outcomes: a population-based cohort study. (2022) Wong, Angel Ys; Tomlinson, Laurie; Brown, Jeremy P; Elson, William; Walker, Alex J; Schultze, Anna; Morton, Caroline E; Evans, David; Inglesby, Peter; MacKenna, Brian; Bhaskaran, Krishnan; Rentsch, Christopher T; Powell, Emma; Williamson, Elizabeth; Croker, Richard; Bacon, Seb; Hulme, William; Bates, Chris; Curtis, Helen J; Mehrkar, Amir; Cockburn, Jonathan; McDonald, Helen I; Mathur, Rohini; Wing, Kevin; Forbes, Harriet; Eggo, Rosalind M; Evans, Stephen Jw; Smeeth, Liam; Goldacre, Ben; Douglas, Ian J; (The OpenSAFELY Collaborative)

Generation time of the alpha and delta SARS-CoV-2 variants: an epidemiological analysis. (2022) Hart, William S; Miller, Elizabeth; Andrews, Nick J; Waight, Pauline; Maini, Philip K; Funk, Sebastian; Thompson, Robin N

Regional-based within-year seasonal variations in influenza-related health outcomes across mainland China: a systematic review and spatio-temporal analysis. (2022) Diamond, Charlie; Gong, Hui; Sun, Fiona Yueqian; Liu, Yang; Quilty, Billy J; Jit, Mark; Yang, Juan; Yu, Hongjie; Edmunds, W John; Baguelin, Marc

SARS-CoV-2 antibodies protect against reinfection for at least 6 months in a multicentre seroepidemiological workplace cohort. (2022) Finch, Emilie; Lowe, Rachel; Fischinger, Stephanie; de St Aubin, Michael; Siddiqui, Sameed M; Dayal, Diana; Loesche, Michael A; Rhee, Justin; Beger, Samuel; Hu, Yiyuan; Gluck, Matthew J; Mormann, Benjamin; Hasdianda, Mohammad A; Musk, Elon R; Alter, Galit; Menon, Anil S; Nilles, Eric J; Kucharski, Adam J; CMMID COVID-19 working group and the SpaceX COVID-19 Cohort Coll

Inference of the SARS-CoV-2 generation time using UK household data. (2022) Hart, William S; Abbott, Sam; Endo, Akira; Hellewell, Joel; Miller, Elizabeth; Andrews, Nick; Maini, Philip K; Funk, Sebastian; Thompson, Robin N

Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves. (2022) Lindsey, Benjamin B; Villabona-Arenas, Ch Julián; Campbell, Finlay; Keeley, Alexander J; Parker, Matthew D; Shah, Dhruv R; Parsons, Helena; Zhang, Peijun; Kakkar, Nishchay; Gallis, Marta; Foulkes, Benjamin H; Wolverson, Paige; Louka, Stavroula F; Christou, Stella; State, Amy; Johnson, Katie; Raza, Mohammad; Hsu, Sharon; Jombart, Thibaut; Cori, Anne; Sheffield COVID-19 Genomics Group; COVID-19 Genomics UK (COG-UK) consortium; CMMID COVID-19 working group; Evans, Cariad M; Partridge, David G; Atkins, Katherine E; Hué, Stéphane; de Silva, Thushan I

Cost-effectiveness of routine adolescent vaccination with an M72/AS01E-like tuberculosis vaccine in South Africa and India. (2022) Harris, Rebecca C; Quaife, Matthew; Weerasuriya, Chathika; Gomez, Gabriela B; Sumner, Tom; Bozzani, Fiammetta; White, Richard G picture_as_pdf

Seroprevalence of SARS-Cov-2 Antibodies in Adults, Arkhangelsk, Russia. (2022) Krieger, Ekaterina; Kudryavtsev, Alexander; Sharashova, Ekaterina; Postoev, Vitaly; Belova, Natalia; Shagrov, Leonid; Zvedina, Julia; Drapkina, Oxana; Kontsevaya, Anna; Shalnova, Svetlana; Brenn, Tormod; Shkolnikov, Vladimir M; Eggo, Rosalind M; Leon, David A

January 2022

Overall and cause-specific hospitalisation and death after COVID-19 hospitalisation in England: A cohort study using linked primary care, secondary care, and death registration data in the OpenSAFELY platform. (2022) Bhaskaran, Krishnan; Rentsch, Christopher T; Hickman, George; Hulme, William J; Schultze, Anna; Curtis, Helen J; Wing, Kevin; Warren-Gash, Charlotte; Tomlinson, Laurie; Bates, Chris J; Mathur, Rohini; MacKenna, Brian; Mahalingasivam, Viyaasan; Wong, Angel; Walker, Alex J; Morton, Caroline E; Grint, Daniel; Mehrkar, Amir; Eggo, Rosalind M; Inglesby, Peter; Douglas, Ian J; McDonald, Helen I; Cockburn, Jonathan; Williamson, Elizabeth J; Evans, David; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Bacon, Sebastian; Smeeth, Liam; Goldacre, Ben picture_as_pdf

A cluster-randomised, non-inferiority trial of the impact of a two-dose compared to three-dose schedule of pneumococcal conjugate vaccination in rural Gambia: the PVS trial. (2022) Mackenzie, Grant A; Osei, Isaac; Salaudeen, Rasheed; Hossain, Ilias; Young, Benjamin; Secka, Ousman; D'Alessandro, Umberto; Palmu, Arto A; Jokinen, Jukka; Hinds, Jason; Flasche, Stefan; Mulholland, Kim; Nguyen, Cattram; Greenwood, Brian

Every Country, Every Family: Time to Act for Group B Streptococcal Disease Worldwide. (2022) Lawn, Joy E; Chandna, Jaya; Paul, Proma; Jit, Mark; Trotter, Caroline; Lambach, Philipp; Ter-Meulen, Ajoke Sobanjo

Estimation of the test to test distribution as a proxy for generation interval distribution for the Omicron variant in England. (2022) Abbott, Sam; Sherratt, Katharine; Gerstung, Moritz; Funk, Sebastian

Unexposed populations and potential COVID-19 hospitalisations and deaths in European countries as per data up to 21 November 2021. (2022) Chapman, Lloyd AC; Barnard, Rosanna C; Russell, Timothy W; Abbott, Sam; van Zandvoort, Kevin; Davies, Nicholas G; Kucharski, Adam J

Quantifying the Relationship between Antibiotic Use in Food-Producing Animals and Antibiotic Resistance in Humans. (2022) Emes, David; Naylor, Nichola; Waage, Jeff; Knight, Gwenan

Mapping environmental suitability of Haemagogus and Sabethes spp. mosquitoes to understand sylvatic transmission risk of yellow fever virus in Brazil. (2022) Li, Sabrina L; Acosta, André L; Hill, Sarah C; Brady, Oliver J; de Almeida, Marco AB; Cardoso, Jader da C; Hamlet, Arran; Mucci, Luis F; Telles de Deus, Juliana; Iani, Felipe CM; Alexander, Neil S; Wint, GR William; Pybus, Oliver G; Kraemer, Moritz UG; Faria, Nuno R; Messina, Jane P

Reproducible disease phenotyping at scale: Example of coronary artery disease in UK Biobank. (2022) Patel, Riyaz S; Denaxas, Spiros; Howe, Laurence J; Eggo, Rosalind M; Shah, Anoop D; Allen, Naomi E; Danesh, John; Hingorani, Aroon; Sudlow, Cathie; Hemingway, Harry

Wild boar visits to commercial pig farms in southwest England: implications for disease transmission. (2022) Bacigalupo, Sonny A; Dixon, Linda K; Gubbins, Simon; Kucharski, Adam J; Drewe, Julian A

Association between mobility, non-pharmaceutical interventions, and COVID-19 transmission in Ghana: A modelling study using mobile phone data. (2022) Gibbs, Hamish; Liu, Yang; Abbott, Sam; Baffoe-Nyarko, Isaac; Laryea, Dennis O; Akyereko, Ernest; Kuma-Aboagye, Patrick; Asante, Ivy Asantewaa; Mitjà, Oriol; LSHTM CMMID COVID-19 Working Group; Ampofo, William; Asiedu-Bekoe, Franklin; Marks, Michael; Eggo, Rosalind M

Rates of serious clinical outcomes in survivors of hospitalisation with COVID-19 in England: a descriptive cohort study within the OpenSAFELY platform. (2022) OpenSAFELY Collaborative; Tazare, John; Walker, Alex J; Tomlinson, Laurie A; Hickman, George; Rentsch, Christopher T; Williamson, Elizabeth J; Bhaskaran, Krishnan; Evans, David; Wing, Kevin; Mathur, Rohini; Wong, Angel Ys; Schultze, Anna; Bacon, Seb; Bates, Chris; Morton, Caroline E; Curtis, Helen J; Nightingale, Emily; McDonald, Helen I; Mehrkar, Amir; Inglesby, Peter; Davy, Simon; MacKenna, Brian; Cockburn, Jonathan; Hulme, William J; Warren-Gash, Charlotte; Bhate, Ketaki; Nitsch, Dorothea; Powell, Emma; Mulick, Amy; Forbes, Harriet; Minassian, Caroline; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Eggo, Rosalind M; Evans, Stephen Jw; Smeeth, Liam; Douglas, Ian J; Goldacre, Ben