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Chantratita, N; Wikraiphat, C; Tandhavanant, S; Wongsuvan, G; Ariyaprasert, P; Suntornsut, P; Thaipadungpanit, J; Teerawattanasook, N; Jutrakul, Y; Srisurat, N; +7 more... Chaimanee, P; Anukunananchai, J; Phiphitaporn, S; Srisamang, P; Chetchotisakd, P; West, TE; Peacock, SJ; (2016) Comparison of community-onset Staphylococcus argenteus and Staphylococcus aureus sepsis in Thailand: a prospective multicentre observational study. Clinical microbiology and infection, 22 (5). 458.e11-458.e19. ISSN 1198-743X DOI: https://doi.org/10.1016/j.cmi.2016.01.008

Chen, Feng; Wang, Shuang; Jiang, Xiaoqian; Ding, Sijie; Lu, Yao; Kim, Jihoon; Sahinalp, S Cenk; Shimizu, Chisato; Burns, Jane C; Wright, Victoria J; +9 more... Png, Eileen; Hibberd, Martin L; Lloyd, David D; Yang, Hai; Telenti, Amalio; Bloss, Cinnamon S; Fox, Dov; Lauter, Kristin; Ohno-Machado, Lucila; (2016) PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. Bioinformatics (Oxford, England), 33 (6). pp. 871-878. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/btw758 Full text not available from this repository.

Chenge, Jude; Kavanagh, Madeline E; Driscoll, Max D; McLean, Kirsty J; Young, Douglas B; Cortes, Teresa; Matak-Vinkovic, Dijana; Levy, Colin W; Rigby, Stephen EJ; Leys, David; +2 more... Abell, Chris; Munro, Andrew W; (2016) Structural characterization of CYP144A1 - a cytochrome P450 enzyme expressed from alternative transcripts in Mycobacterium tuberculosis. Scientific reports, 6 (1). 26628-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep26628

Chinen, Isabel; Galas, Marcelo; Tuduri, Ezequiel; Viñas, Maria Rosa; Carbonari, Carolina; Della Gaspera, Anabella; Nápoli, Daniela; Aanensen, David M; Argimón, Silvia; Thomson, Nicholas R; +25 more... Hughes, Darren; Baker, Stephen; Guzmán-Verri, Caterina; Holden, Matthew TG; Abdala, Alejandra M; Alvarez, Lucia P; Alvez, Beatriz; Barros, Rosana; Budall, Shirley; Campano, Constanza; Chamosa, Luciana S; Cheddie, Paul; Cisterna, Daniel; De Belder, Denise; Dropa, Milena; Durand, David; Elena, Alan; Fontecha, Gustavo; Huber, Claudia; Lemos, Ana Paula; Melli, Luciano; Paul, Roxana Elizabeth; Suarez, Lesly; Torres Flores, Julian; Campos, Josefina; (2016) Whole genome sequencing identifies independent outbreaks of Shigellosis in 2010 and 2011 in La Pampa Province, Argentina. BiorXiv. DOI: https://doi.org/10.1101/049940

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Connor, Thomas R; Owen, Sian V; Langridge, Gemma; Connell, Steve; Nair, Satheesh; Reuter, Sandra; Dallman, Timothy J; Corander, Jukka; Tabing, Kristine C; Le Hello, Simon; +15 more... Fookes, Maria; Doublet, Benoît; Zhou, Zhemin; Feltwell, Theresa; Ellington, Matthew J; Herrera, Silvia; Gilmour, Matthew; Cloeckaert, Axel; Achtman, Mark; Parkhill, Julian; Wain, John; De Pinna, Elizabeth; Weill, François-Xavier; Peters, Tansy; Thomson, Nick; (2016) What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B. mBio, 7 (4). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.00527-16

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Cuccui, Jon; Terra, Vanessa S; Bossé, Janine T; Naegeli, Andreas; Abouelhadid, Sherif; Li, Yanwen; Lin, Chia-Wei; Vohra, Prerna; Tucker, Alexander W; Rycroft, Andrew N; +5 more... Maskell, Duncan J; Aebi, Markus; Langford, Paul R; Wren, Brendan W; BRaDP1T Consortium; (2016) The N-linking glycosylation system from Actinobacillus pleuropneumoniae is required for adhesion and has potential use in glycoengineering. Open biology, 7 (1). p. 160212. ISSN 2046-2441 DOI: https://doi.org/10.1098/rsob.160212

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Di Pilato, Vincenzo; Chiarelli, Adriana; Boinett, Christine J; Riccobono, Eleonora; Harris, Simon R; D'Andrea, Marco Maria; Thomson, Nicholas R; Rossolini, Gian Maria; Giani, Tommaso; (2016) Complete Genome Sequence of the First KPC-Type Carbapenemase-Positive Proteus mirabilis Strain from a Bloodstream Infection. Genome announcements, 4 (3). ISSN 2169-8287 DOI: https://doi.org/10.1128/genomeA.00607-16

Duchêne, Sebastian; Holt, Kathryn E; Weill, François-Xavier; Le Hello, Simon; Hawkey, Jane; Edwards, David J; Fourment, Mathieu; Holmes, Edward C; (2016) Genome-scale rates of evolutionary change in bacteria. MICROBIAL GENOMICS, 2 (11). e000094-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000094

Duchêne, Sebastián; Duchêne, David A; Di Giallonardo, Francesca; Eden, John-Sebastian; Geoghegan, Jemma L; Holt, Kathryn E; Ho, Simon YW; Holmes, Edward C; (2016) Cross-validation to select Bayesian hierarchical models in phylogenetics. BMC EVOLUTIONARY BIOLOGY, 16 (1). 115-. ISSN 1471-2148 DOI: https://doi.org/10.1186/s12862-016-0688-y

Duong, Vu Thuy; Phat, Voong Vinh; Tuyen, Ha Thanh; Dung, Tran Thi Ngoc; Trung, Pham Duc; Minh, Pham Van; Tu, Le Thi Phuong; Campbell, James I; Le Phuc, Hoang; Ha, Ton Thi Thanh; +15 more... Ngoc, Nguyen Minh; Huong, Nguyen Thi Thanh; Tam, Pham Thi Thanh; Huong, Dang Thao; Xang, Nguyen Van; Dong, Nguyen; Phuong, Le Thi; Hung, Nguyen Van; Phu, Bui Duc; Phuc, Tran My; Thwaites, Guy E; Vi, Lu Lan; Rabaa, Maia A; Thompson, Corinne N; Baker, Stephen; (2016) Evaluation of Luminex xTAG Gastrointestinal Pathogen Panel Assay for Detection of Multiple Diarrheal Pathogens in Fecal Samples in Vietnam. Journal of clinical microbiology, 54 (4). pp. 1094-1100. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.03321-15

Elmi, A; Dorey, A; Jagatia, H; Gundogdu, O; Bajaj-Elliott, M; Wren, WB; Dorrell, N; (2016) Investigating the role of the bile salt sodium taurocholate in influencing Campylobacter jejuni outer membrane vesicle production, content and function. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648020 Full text not available from this repository.

Esson, Diane; Mather, Alison E; Scanlan, Eoin; Gupta, Srishti; de Vries, Stefan PW; Bailey, David; Harris, Simon R; McKinley, Trevelyan J; Méric, Guillaume; Berry, Sophia K; +7 more... Mastroeni, Pietro; Sheppard, Samuel K; Christie, Graham; Thomson, Nicholas R; Parkhill, Julian; Maskell, Duncan J; Grant, Andrew J; (2016) Genomic variations leading to alterations in cell morphology of Campylobacter spp. Scientific reports, 6 (1). 38303-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep38303

Fajardo, Teodoro; AlShaikhahmed, Kinda; Roy, Polly; (2016) Generation of infectious RNA complexes in Orbiviruses: RNA-RNA interactions of genomic segments. Oncotarget, 7 (45). pp. 72559-72570. ISSN 1949-2553 DOI: https://doi.org/10.18632/oncotarget.12496

Feasey, Nicholas A; Hadfield, James; Keddy, Karen H; Dallman, Timothy J; Jacobs, Jan; Deng, Xiangyu; Wigley, Paul; Barquist, Lars; Langridge, Gemma C; Feltwell, Theresa; +37 more... Harris, Simon R; Mather, Alison E; Fookes, Maria; Aslett, Martin; Msefula, Chisomo; Kariuki, Samuel; Maclennan, Calman A; Onsare, Robert S; Weill, François-Xavier; Le Hello, Simon; Smith, Anthony M; McClelland, Michael; Desai, Prerak; Parry, Christopher M; Cheesbrough, John; French, Neil; Campos, Josefina; Chabalgoity, Jose A; Betancor, Laura; Hopkins, Katie L; Nair, Satheesh; Humphrey, Tom J; Lunguya, Octavie; Cogan, Tristan A; Tapia, Milagritos D; Sow, Samba O; Tennant, Sharon M; Bornstein, Kristin; Levine, Myron M; Lacharme-Lora, Lizeth; Everett, Dean B; Kingsley, Robert A; Parkhill, Julian; Heyderman, Robert S; Dougan, Gordon; Gordon, Melita A; Thomson, Nicholas R; (2016) Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings. Nature genetics, 48 (10). pp. 1211-1217. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3644

Fougère, Aurélie; Jackson, Andrew P; Bechtsi, Dafni Paraskevi; Braks, Joanna AM; Annoura, Takeshi; Fonager, Jannik; Spaccapelo, Roberta; Ramesar, Jai; Chevalley-Maurel, Séverine; Klop, Onny; +10 more... van der Laan, Annelies MA; Tanke, Hans J; Kocken, Clemens HM; Pasini, Erica M; Khan, Shahid M; Böhme, Ulrike; van Ooij, Christiaan; Otto, Thomas D; Janse, Chris J; Franke-Fayard, Blandine; (2016) Variant Exported Blood-Stage Proteins Encoded by Plasmodium Multigene Families Are Expressed in Liver Stages Where They Are Exported into the Parasitophorous Vacuole. PLOS PATHOGENS, 12 (11). e1005917-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1005917

Francisco, Amanda Fortes; Jayawardhana, Shiromani; Lewis, Michael D; White, Karen L; Shackleford, David M; Chen, Gong; Saunders, Jessica; Osuna-Cabello, Maria; Read, Kevin D; Charman, Susan A; +2 more... Chatelain, Eric; Kelly, John M; (2016) Nitroheterocyclic drugs cure experimental Trypanosoma cruzi infections more effectively in the chronic stage than in the acute stage. Scientific reports, 6 (1). 35351-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep35351

Furuya-Kanamori, Luis; Yakob, Laith; Riley, Thomas V; Paterson, David L; Baker, Peter; McKenzie, Samantha J; Robson, Jenny; Clements, Archie CA; (2016) Community-Acquired Clostridium difficile Infection, Queensland, Australia. Emerging infectious diseases, 22 (9). pp. 1659-1661. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2209.151115

Gomez, Andromeda; Andreu, Núria; Ferrer-Navarro, Mario; Yero, Daniel; Gibert, Isidre; (2016) Triclosan-induced genes Rv1686c-Rv1687c and Rv3161c are not involved in triclosan resistance in Mycobacterium tuberculosis. Scientific reports, 6 (1). 26221-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep26221

Gouliouris, Theodore; Blane, Beth; Brodrick, Hayley J; Raven, Kathy E; Ambridge, Kirsty E; Kidney, Angela D; Hadjirin, Nazreen F; Török, M Estée; Limmathurotsakul, Direk; Peacock, Sharon J; (2016) Comparison of two chromogenic media for the detection of vancomycin-resistant enterococcal carriage by nursing home residents. Diagnostic microbiology and infectious disease, 85 (4). pp. 409-412. ISSN 0732-8893 DOI: https://doi.org/10.1016/j.diagmicrobio.2016.04.026

Gundogdu, O; Davies, C; Liaw, J; Elmi, A; Hachani, A; Wren, WB; Dorrell, N; (2016) Investigation of the role of the Campylobacter jejuni Type VI secretion system in secretion of virulence factors and interactions with host cells. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648054 Full text not available from this repository.

Gundogdu, Ozan; da Silva, Daiani T; Mohammad, Banaz; Elmi, Abdi; Wren, Brendan W; van Vliet, Arnoud HM; Dorrell, Nick; (2016) The Campylobacter jejuni Oxidative Stress Regulator RrpB Is Associated with a Genomic Hypervariable Region and Altered Oxidative Stress Resistance. Frontiers in microbiology, 7 (DEC). 2117-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2016.02117

Hamidian, Mohammad; Holt, Kathryn E; Pickard, Derek; Hall, Ruth M; (2016) A small Acinetobacter plasmid carrying the tet39 tetracycline resistance determinant. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 71 (1). pp. 269-271. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkv293

Hamilton, William L; Claessens, Antoine; Otto, Thomas D; Kekre, Mihir; Fairhurst, Rick M; Rayner, Julian C; Kwiatkowski, Dominic; (2016) Extreme mutation bias and high AT content in Plasmodium falciparum. Nucleic acids research, 45 (4). pp. 1889-1901. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkw1259

Hantrakun, Viriya; Rongkard, Patpong; Oyuchua, Malinee; Amornchai, Premjit; Lim, Cherry; Wuthiekanun, Vanaporn; Day, Nicholas PJ; Peacock, Sharon J; Limmathurotsakul, Direk; (2016) Soil Nutrient Depletion Is Associated with the Presence of Burkholderia pseudomallei. Applied and environmental microbiology, 82 (24). pp. 7086-7092. ISSN 0099-2240 DOI: https://doi.org/10.1128/AEM.02538-16

Harrison, Ewan M; Ludden, Catherine; Brodrick, Hayley J; Blane, Beth; Brennan, Gráinne; Morris, Dearbháile; Coll, Francesc; Reuter, Sandra; Brown, Nicholas M; Holmes, Mark A; +5 more... O'Connell, Brian; Parkhill, Julian; Török, M Estee; Cormican, Martin; Peacock, Sharon J; (2016) Transmission of methicillin-resistant Staphylococcus aureus in long-term care facilities and their related healthcare networks. Genome medicine, 8 (1). 102-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-016-0353-5

Herberg, Jethro A; Kaforou, Myrsini; Wright, Victoria J; Shailes, Hannah; Eleftherohorinou, Hariklia; Hoggart, Clive J; Cebey-López, Miriam; Carter, Michael J; Janes, Victoria A; Gormley, Stuart; +14 more... Shimizu, Chisato; Tremoulet, Adriana H; Barendregt, Anouk M; Salas, Antonio; Kanegaye, John; Pollard, Andrew J; Faust, Saul N; Patel, Sanjay; Kuijpers, Taco; Martinón-Torres, Federico; Burns, Jane C; Coin, Lachlan JM; Levin, Michael; IRIS Consortium; (2016) Diagnostic Test Accuracy of a 2-Transcript Host RNA Signature for Discriminating Bacterial vs Viral Infection in Febrile Children. JAMA, 316 (8). pp. 835-845. ISSN 0098-7484 DOI: https://doi.org/10.1001/jama.2016.11236

Holmes, Christopher W; Koo, Sharon SF; Osman, Husam; Wilson, Steven; Xerry, Jacqueline; Gallimore, Chris I; Allen, David J; Tang, Julian W; (2016) Predominance of enterovirus B and echovirus 30 as cause of viral meningitis in a UK population. Journal of clinical virology, 81. pp. 90-93. ISSN 1386-6532 DOI: https://doi.org/10.1016/j.jcv.2016.06.007

Holt, Kathryn; Kenyon, Johanna J; Hamidian, Mohammad; Schultz, Mark B; Pickard, Derek J; Dougan, Gordon; Hall, Ruth; (2016) Five decades of genome evolution in the globally distributed, extensively antibiotic-resistant Acinetobacter baumannii global clone 1. MICROBIAL GENOMICS, 2 (2). e000052-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000052

Hussein, M; Naz, N; Gundogdu, O; Elmi, A; Wren, WB; Dorrell, N; (2016) The role of Campylobacter jejuni fibronectinbinding proteins CadF and FlpA during bacterial interactions with host cells: comparison between 11168H and 81-176 strains. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648053 Full text not available from this repository.

Im, Justin; Nichols, Chelsea; Bjerregaard-Andersen, Morten; Sow, Amy Gassama; Løfberg, Sandra; Tall, Adama; Pak, Gi Deok; Aaby, Peter; Baker, Stephen; Clemens, John D; +11 more... Espinoza, Ligia Maria Cruz; Konings, Frank; May, Jürgen; Monteiro, Mario; Niang, Aissatou; Panzner, Ursula; Park, Se Eun; Schütt-Gerowitt, Heidi; Wierzba, Thomas F; Marks, Florian; von Kalckreuth, Vera; (2016) Prevalence of Salmonella Excretion in Stool: A Community Survey in 2 Sites, Guinea-Bissau and Senegal. Clinical infectious diseases, 62 Sup (suppl). S50-S55. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/civ789 Full text not available from this repository.

Ingle, Danielle J; Valcanis, Mary; Kuzevski, Alex; Tauschek, Marija; Inouye, Michael; Stinear, Tim; Levine, Myron M; Robins-Browne, Roy M; Holt, Kathryn E; (2016) In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages. MICROBIAL GENOMICS, 2 (7). e000064-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000064

International Typhoid Consortium; Wong, Vanessa K; Holt, Kathryn E; Okoro, Chinyere; Baker, Stephen; Pickard, Derek J; Marks, Florian; Page, Andrew J; Olanipekun, Grace; Munir, Huda; +22 more... Alter, Roxanne; Fey, Paul D; Feasey, Nicholas A; Weill, Francois-Xavier; Le Hello, Simon; Hart, Peter J; Kariuki, Samuel; Breiman, Robert F; Gordon, Melita A; Heyderman, Robert S; Jacobs, Jan; Lunguya, Octavie; Msefula, Chisomo; MacLennan, Calman A; Keddy, Karen H; Smith, Anthony M; Onsare, Robert S; De Pinna, Elizabeth; Nair, Satheesh; Amos, Ben; Dougan, Gordon; Obaro, Stephen; (2016) Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa. PLoS neglected tropical diseases, 10 (9). e0004781-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004781

Jacob, Alison S; Andersen, Lee O'Brien; Bitar, Paulina Pavinski; Richards, Vincent P; Shah, Sarah; Stanhope, Michael J; Stensvold, C Rune; Clark, C Graham; (2016) Blastocystis Mitochondrial Genomes Appear to Show Multiple Independent Gains and Losses of Start and Stop Codons. Genome biology and evolution, 8 (11). pp. 3340-3350. ISSN 1759-6653 DOI: https://doi.org/10.1093/gbe/evw255

Jamrozy, Dorota M; Harris, Simon R; Mohamed, Naglaa; Peacock, Sharon J; Tan, Charles Y; Parkhill, Julian; Anderson, Annaliesa S; Holden, Matthew TG; (2016) Pan-genomic perspective on the evolution of the Staphylococcus aureus USA300 epidemic. Microbial genomics, 2 (5). e000058-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000058

Jones-Dias, Daniela; Clemente, Lurdes; Egas, Conceição; Froufe, Hugo; Sampaio, Daniel A; Vieira, Luís; Fookes, Maria; Thomson, Nicholas R; Manageiro, Vera; Caniça, Manuela; (2016) Salmonella Enteritidis Isolate Harboring Multiple Efflux Pumps and Pathogenicity Factors, Shows Absence of O Antigen Polymerase Gene. FRONTIERS IN MICROBIOLOGY, 7. 1130-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2016.01130

Judge, Kim; Hunt, Martin; Reuter, Sandra; Tracey, Alan; Quail, Michael A; Parkhill, Julian; Peacock, Sharon J; (2016) Comparison of bacterial genome assembly software for MinION data and their applicability to medical microbiology. Microbial genomics, 2 (9). e000085-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000085

Karlsson, Stefan L; Thomson, Nicholas; Mutreja, Ankur; Connor, Thomas; Sur, Dipika; Ali, Mohammad; Clemens, John; Dougan, Gordon; Holmgren, Jan; Lebens, Michael; (2016) Retrospective Analysis of Serotype Switching of Vibrio cholerae O1 in a Cholera Endemic Region Shows It Is a Non-random Process. PLoS neglected tropical diseases, 10 (10). e0005044-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005044

Kay, Emily J; Yates, Laura E; Terra, Vanessa S; Cuccui, Jon; Wren, Brendan W; (2016) Recombinant expression of Streptococcus pneumoniae capsular polysaccharides in Escherichia coli. Open biology, 6 (4). 150243-. ISSN 2046-2441 DOI: https://doi.org/10.1098/rsob.150243

Khalil, Uzma; Younus, Mahwish; Asghar, Naeem; Siddiqui, Fariha; Gómez-Duarte, Oscar G; Wren, Brendan W; Bokhari, Habib; (2016) Phenotypic and genotypic characterization of enteroaggregative Escherichia coli isolates from pediatric population in Pakistan. APMIS, 124 (10). pp. 872-880. ISSN 0903-4641 DOI: https://doi.org/10.1111/apm.12577 Full text not available from this repository.

Khor, Chiea Chuen; Do, Tan; Jia, Hongyan; Nakano, Masakazu; George, Ronnie; Abu-Amero, Khaled; Duvesh, Roopam; Chen, Li Jia; Li, Zheng; Nongpiur, Monisha E; +219 more... Perera, Shamira A; Qiao, Chunyan; Wong, Hon-Tym; Sakai, Hiroshi; Barbosa de Melo, Mônica; Lee, Mei-Chin; Chan, Anita S; Azhany, Yaakub; Dao, Thi Lam Huong; Ikeda, Yoko; Perez-Grossmann, Rodolfo A; Zarnowski, Tomasz; Day, Alexander C; Jonas, Jost B; Tam, Pancy OS; Tran, Tuan Anh; Ayub, Humaira; Akhtar, Farah; Micheal, Shazia; Chew, Paul TK; Aljasim, Leyla A; Dada, Tanuj; Luu, Tam Thi; Awadalla, Mona S; Kitnarong, Naris; Wanichwecharungruang, Boonsong; Aung, Yee Yee; Mohamed-Noor, Jelinar; Vijayan, Saravanan; Sarangapani, Sripriya; Husain, Rahat; Jap, Aliza; Baskaran, Mani; Goh, David; Su, Daniel H; Wang, Huaizhou; Yong, Vernon K; Yip, Leonard W; Trinh, Tuyet Bach; Makornwattana, Manchima; Nguyen, Thanh Thu; Leuenberger, Edgar U; Park, Ki-Ho; Wiyogo, Widya Artini; Kumar, Rajesh S; Tello, Celso; Kurimoto, Yasuo; Thapa, Suman S; Pathanapitoon, Kessara; Salmon, John F; Sohn, Yong Ho; Fea, Antonio; Ozaki, Mineo; Lai, Jimmy SM; Tantisevi, Visanee; Khaing, Chaw Chaw; Mizoguchi, Takanori; Nakano, Satoko; Kim, Chan-Yun; Tang, Guangxian; Fan, Sujie; Wu, Renyi; Meng, Hailin; Nguyen, Thi Thuy Giang; Tran, Tien Dat; Ueno, Morio; Martinez, Jose Maria; Ramli, Norlina; Aung, Yin Mon; Reyes, Rigo Daniel; Vernon, Stephen A; Fang, Seng Kheong; Xie, Zhicheng; Chen, Xiao Yin; Foo, Jia Nee; Sim, Kar Seng; Wong, Tina T; Quek, Desmond T; Venkatesh, Rengaraj; Kavitha, Srinivasan; Krishnadas, Subbiah R; Soumittra, Nagaswamy; Shantha, Balekudaru; Lim, Boon-Ang; Ogle, Jeanne; de Vasconcellos, José PC; Costa, Vital P; Abe, Ricardo Y; de Souza, Bruno B; Sng, Chelvin C; Aquino, Maria C; Kosior-Jarecka, Ewa; Fong, Guillermo Barreto; Tamanaja, Vania Castro; Fujita, Ricardo; Jiang, Yuzhen; Waseem, Naushin; Low, Sancy; Pham, Huan Nguyen; Al-Shahwan, Sami; Craven, E Randy; Khan, Muhammad Imran; Dada, Rrima; Mohanty, Kuldeep; Faiq, Muneeb A; Hewitt, Alex W; Burdon, Kathryn P; Gan, Eng Hui; Prutthipongsit, Anuwat; Patthanathamrongkasem, Thipnapa; Catacutan, Mary Ann T; Felarca, Irene R; Liao, Chona S; Rusmayani, Emma; Istiantoro, Vira Wardhana; Consolandi, Giulia; Pignata, Giulia; Lavia, Carlo; Rojanapongpun, Prin; Mangkornkanokpong, Lerprat; Chansangpetch, Sunee; Chan, Jonathan CH; Choy, Bonnie NK; Shum, Jennifer WH; Than, Hlaing May; Oo, Khin Thida; Han, Aye Thi; Yong, Victor H; Ng, Xiao-Yu; Goh, Shuang Ru; Chong, Yaan Fun; Hibberd, Martin L; Seielstad, Mark; Png, Eileen; Dunstan, Sarah J; Chau, Nguyen Van Vinh; Bei, Jinxin; Zeng, Yi Xin; Karkey, Abhilasha; Basnyat, Buddha; Pasutto, Francesca; Paoli, Daniela; Frezzotti, Paolo; Wang, Jie Jin; Mitchell, Paul; Fingert, John H; Allingham, R Rand; Hauser, Michael A; Lim, Soon Thye; Chew, Soo Hong; Ebstein, Richard P; Sakuntabhai, Anavaj; Park, Kyu Hyung; Ahn, Jeeyun; Boland, Greet; Snippe, Harm; Stead, Richard; Quino, Raquel; Zaw, Su Nyunt; Lukasik, Urszula; Shetty, Rohit; Zahari, Mimiwati; Bae, Hyoung Won; Oo, Nay Lin; Kubota, Toshiaki; Manassakorn, Anita; Ho, Wing Lau; Dallorto, Laura; Hwang, Young Hoon; Kiire, Christine A; Kuroda, Masako; Djamal, Zeiras Eka; Peregrino, Jovell Ian M; Ghosh, Arkasubhra; Jeoung, Jin Wook; Hoan, Tung S; Srisamran, Nuttamon; Sandragasu, Thayanithi; Set, Saw Htoo; Doan, Vi Huyen; Bhattacharya, Shomi S; Ho, Ching-Lin; Tan, Donald T; Sihota, Ramanjit; Loon, Seng-Chee; Mori, Kazuhiko; Kinoshita, Shigeru; Hollander, Anneke I den; Qamar, Raheel; Wang, Ya-Xing; Teo, Yik Y; Tai, E-Shyong; Hartleben-Matkin, Curt; Lozano-Giral, David; Saw, Seang Mei; Cheng, Ching-Yu; Zenteno, Juan C; Pang, Chi Pui; Bui, Huong TT; Hee, Owen; Craig, Jamie E; Edward, Deepak P; Yonahara, Michiko; Neto, Jamil Miguel; Guevara-Fujita, Maria L; Xu, Liang; Ritch, Robert; Liza-Sharmini, Ahmad Tajudin; Wong, Tien Y; Al-Obeidan, Saleh; Do, Nhu Hon; Sundaresan, Periasamy; Tham, Clement C; Foster, Paul J; Vijaya, Lingam; Tashiro, Kei; Vithana, Eranga N; Wang, Ningli; Aung, Tin; (2016) Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma. Nature genetics, 48 (5). pp. 556-562. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3540 Full text not available from this repository.

Kishore, Kranti G; Ghashghaei, Ouldouz; Estarellas, Carolina; Mestre, M Mar; Monturiol, Cristina; Kielland, Nicola; Kelly, John M; Francisco, Amanda Fortes; Jayawardhana, Shiromani; Muñoz-Torrero, Diego; +4 more... Pérez, Belén; Luque, F Javier; Gámez-Montaño, Rocío; Lavilla, Rodolfo; (2016) Insertion of Isocyanides into N-Si Bonds: Multicomponent Reactions with Azines Leading to Potent Antiparasitic Compounds. Angewandte Chemie (International ed in English), 55 (31). pp. 8994-8998. ISSN 1433-7851 DOI: https://doi.org/10.1002/anie.201604109

Kishore, Kranti G; Ghashghaei, Ouldouz; Estarellas, Carolina; Mestre, M Mar; Monturiol, Cristina; Kielland, Nicola; Kelly, John M; Francisco, Amanda Fortes; Jayawardhana, Shiromani; Muñoz-Torrero, Diego; +4 more... Pérez, Belén; Luque, F Javier; Gámez-Montaño, Rocío; Lavilla, Rodolfo; (2016) Insertion of Isocyanides into N−Si Bonds: Multicomponent Reactions with Azines Leading to Potent Antiparasitic Compounds. Angewandte Chemie, 128 (31). pp. 9140-9144. ISSN 0044-8249 DOI: https://doi.org/10.1002/ange.201604109

Labbate, Maurizio; Orata, Fabini D; Petty, Nicola K; Jayatilleke, Nathasha D; King, William L; Kirchberger, Paul C; Allen, Chris; Mann, Gulay; Mutreja, Ankur; Thomson, Nicholas R; +2 more... Boucher, Yan; Charles, Ian G; (2016) A genomic island in Vibrio cholerae with VPI-1 site-specific recombination characteristics contains CRISPR-Cas and type VI secretion modules. SCIENTIFIC REPORTS, 6 (1). 36891-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep36891

Lee, I Russel; Molton, James S; Wyres, Kelly L; Gorrie, Claire; Wong, Jocelyn; Hoh, Chu Han; Teo, Jeanette; Kalimuddin, Shirin; Lye, David C; Archuleta, Sophia; +2 more... Holt, Kathryn E; Gan, Yunn-Hwen; (2016) Differential host susceptibility and bacterial virulence factors driving Klebsiella liver abscess in an ethnically diverse population. SCIENTIFIC REPORTS, 6 (1). 29316-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep29316

Leung, Jacqueline M; Hong, Chau Tran Thi; Trung, Nghia Ho Dang; Thi, Hoa Nhu; Minh, Chau Nguyen Ngoc; Thi, Thuy Vu; Hong, Dinh Thanh; Man, Dinh Nguyen Huy; Knowles, Sarah CL; Wolbers, Marcel; +4 more... Hoang, Nhat Le Thanh; Thwaites, Guy; Graham, Andrea L; Baker, Stephen; (2016) The impact of albendazole treatment on the incidence of viral- and bacterial-induced diarrhea in school children in southern Vietnam: study protocol for a randomized controlled trial. Trials, 17 (1). 279-. ISSN 1745-6215 DOI: https://doi.org/10.1186/s13063-016-1406-1

Lewis, Michael D; Kelly, John M; (2016) Putting Infection Dynamics at the Heart of Chagas Disease. Trends in parasitology, 32 (11). pp. 899-911. ISSN 1471-4922 DOI: https://doi.org/10.1016/j.pt.2016.08.009

Lim, Cherry; Takahashi, Emi; Hongsuwan, Maliwan; Wuthiekanun, Vanaporn; Thamlikitkul, Visanu; Hinjoy, Soawapak; Day, Nicholas Pj; Peacock, Sharon J; Limmathurotsakul, Direk; (2016) Epidemiology and burden of multidrug-resistant bacterial infection in a developing country. eLife, 5 (Septem). ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.18082

Limmathurotsakul, Direk; Golding, Nick; Dance, David Ab; Messina, Jane P; Pigott, David M; Moyes, Catherine L; Rolim, Dionne B; Bertherat, Eric; Day, Nicholas Pj; Peacock, Sharon J; +1 more... Hay, Simon I; (2016) Predicted global distribution of Burkholderia pseudomallei and burden of melioidosis. Nature microbiology, 1 (1). 15008-. ISSN 2058-5276 DOI: https://doi.org/10.1038/nmicrobiol.2015.8

Lu, Lu; Van Dung, Nguyen; Bryant, Juliet E; Carrique-Mas, Juan; Van Cuong, Nguyen; Anh, Pham Honh; Rabaa, Maia A; Baker, Stephen; Simmonds, Peter; Woolhouse, Mark E; (2016) Evolution and phylogeographic dissemination of endemic porcine picornaviruses in Vietnam. Virus evolution, 2 (1). vew001-. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vew001

Lulla, Valeria; Lulla, Aleksei; Wernike, Kerstin; Aebischer, Andrea; Beer, Martin; Roy, Polly; (2016) Assembly of Replication-Incompetent African Horse Sickness Virus Particles: Rational Design of Vaccines for All Serotypes. Journal of virology, 90 (16). pp. 7405-7414. ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.00548-16

Maishman, Luke; Obado, Samson O; Alsford, Sam; Bart, Jean-Mathieu; Chen, Wei-Ming; Ratushny, Alexander V; Navarro, Miguel; Horn, David; Aitchison, John D; Chait, Brian T; +2 more... Rout, Michael P; Field, Mark C; (2016) Co-dependence between trypanosome nuclear lamina components in nuclear stability and control of gene expression. Nucleic acids research, 44 (22). pp. 10554-10570. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkw751

Makendi Njock, EC; (2016) The phylogenetic and phenotypic analysis of Salmonella enterica serovar Weltevreden. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.02550034

Makendi, Carine; Page, Andrew J; Wren, Brendan W; Le Thi Phuong, Tu; Clare, Simon; Hale, Christine; Goulding, David; Klemm, Elizabeth J; Pickard, Derek; Okoro, Chinyere; +10 more... Hunt, Martin; Thompson, Corinne N; Phu Huong Lan, Nguyen; Tran Do Hoang, Nhu; Thwaites, Guy E; Le Hello, Simon; Brisabois, Anne; Weill, François-Xavier; Baker, Stephen; Dougan, Gordon; (2016) A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions. PLoS neglected tropical diseases, 10 (2). e0004446-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004446

MalariaGEN Plasmodium falciparum Community Project; (2016) Genomic epidemiology of artemisinin resistant malaria. eLife, 5 (MARCH2). ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.08714

Martinón-Torres, Federico; Png, Eileen; Khor, Chiea Chuen; Davila, Sonia; Wright, Victoria J; Sim, Kar Seng; Vega, Ana; Fachal, Laura; Inwald, David; Nadel, Simon; +18 more... Carrol, Enitan D; Martinón-Torres, Nazareth; Alonso, Sonia Marcos; Carracedo, Angel; Morteruel, Elvira; López-Bayón, Julio; Torre, Andrés Concha; Monge, Cristina Calvo; de Aguilar, Pilar Azcón González; Torné, Elisabeth Esteban; Martínez-Padilla, María Del Carmen; Martinón-Sánchez, José María; Levin, Michael; Hibberd, Martin L; Salas, Antonio; ESIGEM network; ESPID meningococcal consortium – UK; EUCLIDS consortium members - Imperial College London (www.euclid; (2016) Natural resistance to Meningococcal Disease related to CFH loci: Meta-analysis of genome-wide association studies. Scientific reports, 6 (1). 35842-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep35842

Mascotti, Maria Laura; Juri Ayub, Maximiliano; Furnham, Nicholas; Thornton, Janet M; Laskowski, Roman A; (2016) Chopping and Changing: the Evolution of the Flavin-dependent Monooxygenases. Journal of molecular biology, 428 (15). pp. 3131-3146. ISSN 0022-2836 DOI: https://doi.org/10.1016/j.jmb.2016.07.003

Mather, Alison E; Lawson, Becki; de Pinna, Elizabeth; Wigley, Paul; Parkhill, Julian; Thomson, Nicholas R; Page, Andrew J; Holmes, Mark A; Paterson, Gavin K; (2016) Genomic Analysis of Salmonella enterica Serovar Typhimurium from Wild Passerines in England and Wales. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82 (22). pp. 6728-6735. ISSN 0099-2240 DOI: https://doi.org/10.1128/AEM.01660-16

Maude, Rapeephan R; Ghose, Aniruddha; Samad, Rasheda; de Jong, Hanna K; Fukushima, Masako; Wijedoru, Lalith; Hassan, Mahtab Uddin; Hossain, Md Amir; Karim, Md Rezaul; Sayeed, Abdullah Abu; +19 more... van den Ende, Stannie; Pal, Sujat; Zahed, ASM; Rahman, Wahid; Karnain, Rifat; Islam, Rezina; Tran, Dung Thi Ngoc; Ha, Tuyen Thanh; Pham, Anh Hong; Campbell, James I; van Doorn, H Rogier; Maude, Richard J; van der Poll, Tom; Wiersinga, W Joost; Day, Nicholas PJ; Baker, Stephen; Dondorp, Arjen M; Parry, Christopher M; Faiz, Md Abul; (2016) A prospective study of the importance of enteric fever as a cause of non-malarial febrile illness in patients admitted to Chittagong Medical College Hospital, Bangladesh. BMC infectious diseases, 16 (1). 567-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-016-1886-3

McCarthy, Alex J; Negus, David; Martin, Patricia; Pechincha, Catarina; Oswald, Eric; Stabler, Richard A; Taylor, Peter W; (2016) Pathoadaptive Mutations of Escherichia coli K1 in Experimental Neonatal Systemic Infection. PloS one, 11 (11). e0166793-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0166793

Melo-Filho, CC; Dantas, RF; Braga, RC; Neves, BJ; Senger, MR; Valente, WC; Rezende-Neto, JM; Chaves, WT; Muratov, EN; Paveley, RA; +5 more... Furnham, N; Kamentsky, L; Carpenter, AE; Silva-Junior, FP; Andrade, CH; (2016) QSAR-Driven Discovery of Novel Chemical Scaffolds Active against Schistosoma mansoni. Journal of chemical information and modeling, 56 (7). pp. 1357-72. ISSN 1549-9596 DOI: https://doi.org/10.1021/acs.jcim.6b00055

MenAfriCar Consortium; (2016) Household transmission of Neisseria meningitidis in the African meningitis belt: a longitudinal cohort study. The Lancet Global health, 4 (12). e989-e995. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(16)30244-3

Miari, Victoria F; Ison, Catherine A; (2016) Is there a role for topical antiseptics in the treatment of gonorrhoea? Sexually transmitted infections, 93 (2). pp. 79-80. ISSN 1368-4973 DOI: https://doi.org/10.1136/sextrans-2016-053028 Full text not available from this repository.

Miles, Alistair; Iqbal, Zamin; Vauterin, Paul; Pearson, Richard; Campino, Susana; Theron, Michel; Gould, Kelda; Mead, Daniel; Drury, Eleanor; O'Brien, John; +12 more... Ruano Rubio, Valentin; MacInnis, Bronwyn; Mwangi, Jonathan; Samarakoon, Upeka; Ranford-Cartwright, Lisa; Ferdig, Michael; Hayton, Karen; Su, Xin-Zhuan; Wellems, Thomas; Rayner, Julian; McVean, Gil; Kwiatkowski, Dominic; (2016) Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum. Genome research, 26 (9). pp. 1288-1299. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.203711.115

Mohl, Bjorn-Patrick; Bartlett, Christopher; Mankouri, Jamel; Harris, Mark; (2016) Early events in the generation of autophagosomes are required for the formation of membrane structures involved in hepatitis C virus genome replication. The Journal of general virology, 97 (3). pp. 680-693. ISSN 0022-1317 DOI: https://doi.org/10.1099/jgv.0.000387 Full text not available from this repository.

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Tweedy, Joshua; Spyrou, Maria Alexandra; Pearson, Max; Lassner, Dirk; Kuhl, Uwe; Gompels, Ursula A; (2016) Complete Genome Sequence of Germline Chromosomally Integrated Human Herpesvirus 6A and Analyses Integration Sites Define a New Human Endogenous Virus with Potential to Reactivate as an Emerging Infection. Viruses, 8 (1). p. 19. ISSN 1999-4915 DOI: https://doi.org/10.3390/v8010019

Valiente, Esmeralda; Bouché, Laura; Hitchen, Paul; Faulds-Pain, Alexandra; Songane, Mario; Dawson, Lisa F; Donahue, Elizabeth; Stabler, Richard A; Panico, Maria; Morris, Howard R; +4 more... Bajaj-Elliott, Mona; Logan, Susan M; Dell, Anne; Wren, Brendan W; (2016) Role of Glycosyltransferases Modifying Type B Flagellin of Emerging Hypervirulent Clostridium difficile Lineages and Their Impact on Motility and Biofilm Formation. The Journal of biological chemistry, 291 (49). pp. 25450-25461. ISSN 0021-9258 DOI: https://doi.org/10.1074/jbc.M116.749523

Van Vinh Chau, Nguyen; Buu Chau, Le; Desquesnes, Marc; Herder, Stephane; Phu Huong Lan, Nguyen; Campbell, James I; Van Cuong, Nguyen; Yimming, Benjarat; Chalermwong, Piangjai; Jittapalapong, Sathaporn; +16 more... Ramon Franco, Jose; Tri Tue, Ngo; Rabaa, Maia A; Carrique-Mas, Juan; Pham Thi Thanh, Tam; Tran Vu Thieu, Nga; Berto, Alessandra; Thi Hoa, Ngo; Van Minh Hoang, Nguyen; Canh Tu, Nguyen; Khac Chuyen, Nguyen; Wills, Bridget; Tinh Hien, Tran; Thwaites, Guy E; Yacoub, Sophie; Baker, Stephen; (2016) A Clinical and Epidemiological Investigation of the First Reported Human Infection With the Zoonotic Parasite Trypanosoma evansi in Southeast Asia. Clinical infectious diseases, 62 (8). pp. 1002-1008. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciw052

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Yu, Xia; Wang, Guirong; Chen, Suting; Wei, Guomei; Shang, Yuanyuan; Dong, Lingling; Schön, Thomas; Moradigaravand, Danesh; Parkhill, Julian; Peacock, Sharon J; +2 more... Köser, Claudio U; Huang, Hairong; (2016) Wild-Type and Non-Wild-Type Mycobacterium tuberculosis MIC Distributions for the Novel Fluoroquinolone Antofloxacin Compared with Those for Ofloxacin, Levofloxacin, and Moxifloxacin. Antimicrobial agents and chemotherapy, 60 (9). pp. 5232-5237. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.00393-16