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Mills, Richael O; Dadzie, Isaac; Le-Viet, Thanh; Baker, David J; Addy, Humphrey PK; Akwetey, Samuel A; Donkoh, Irene E; Quansah, Elvis; Semanshia, Prince S; Morgan, Jennifer; +9 more... Mensah, Abraham; Adade, Nana E; Ampah, Emmanuel O; Owusu, Emmanuel; Mwintige, Philimon; Amoako, Eric O; Spadar, Anton; Holt, Kathryn E; Foster-Nyarko, Ebenezer; (2024) Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana. The Journal of antimicrobial chemotherapy, 79 (7). pp. 1529-1539. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkae123

Eales, Oliver; Page, Andrew J; Tang, Sonja N; Walters, Caroline E; Wang, Haowei; Haw, David; Trotter, Alexander J; Le Viet, Thanh; Foster-Nyarko, Ebenezer; Prosolek, Sophie; +12 more... Atchison, Christina; Ashby, Deborah; Cooke, Graham; Barclay, Wendy; Donnelly, Christl A; O'Grady, Justin; Volz, Erik; The Covid-Genomics Uk Cog-Uk Consortium; Darzi, Ara; Ward, Helen; Elliott, Paul; Riley, Steven; (2023) The use of representative community samples to assess SARS-CoV-2 lineage competition: Alpha outcompetes Beta and wild-type in England from January to March 2021. Microbial genomics, 9 (2). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000887

Foster-Nyarko, Ebenezer; Cottingham, Hugh; Wick, Ryan R; Judd, Louise M; Lam, Margaret MC; Wyres, Kelly L; Stanton, Thomas D; Tsang, Kara K; David, Sophia; Aanensen, David M; +2 more... Brisse, Sylvain; Holt, Kathryn E; (2023) Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae. Microbial genomics, 9 (2). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000936

Foster-Nyarko, Ebenezer; Cottingham, Hugh; Wick, Ryan R; Judd, Louise M; Lam, Margaret MC; Wyres, Kelly L; Stanton, Thomas D; Tsang, Kara K; David, Sophia; Aanensen, David M; +2 more... Brisse, Sylvain; Holt, Kathryn E; (2023) Corrigendum: 'Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae'. Microbial genomics, 9 (8). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.001084

Miles, Sydney L; Torraca, Vincenzo; Dyson, Zoe A; López-Jiménez, Ana Teresa; Foster-Nyarko, Ebenezer; Lobato-Márquez, Damián; Jenkins, Claire; Holt, Kathryn E; Mostowy, Serge; (2023) Acquisition of a large virulence plasmid (pINV) promoted temperature-dependent virulence and global dispersal of O96:H19 enteroinvasive Escherichia coli. mBio, 14 (4). e0088223-. ISSN 2150-7511 DOI: https://doi.org/10.1128/mbio.00882-23

Foster-Nyarko, Ebenezer; Pallen, Mark J; (2022) The microbial ecology of Escherichia coli in the vertebrate gut. FEMS microbiology reviews, 46 (3). ISSN 0168-6445 DOI: https://doi.org/10.1093/femsre/fuac008

Senghore, Madikay; Chaguza, Chrispin; Bojang, Ebrima; Tientcheu, Peggy-Estelle; Bancroft, Rowan E; Lo, Stephanie W; Gladstone, Rebecca A; McGee, Lesley; Worwui, Archibald; Foster-Nyarko, Ebenezer; +9 more... Ceesay, Fatima; Okoi, Catherine Bi; Klugman, Keith P; Breiman, Robert F; Bentley, Stephen D; Adegbola, Richard; Antonio, Martin; Hanage, William P; Kwambana-Adams, Brenda A; (2022) Widespread sharing of pneumococcal strains in a rural African setting: proximate villages are more likely to share similar strains that are carried at multiple timepoints. Microbial genomics, 8 (2). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000732

Tegally, Houriiyah; San, James E; Cotten, Matthew; Moir, Monika; Tegomoh, Bryan; Mboowa, Gerald; Martin, Darren P; Baxter, Cheryl; Lambisia, Arnold W; Diallo, Amadou; +392 more... Amoako, Daniel G; Diagne, Moussa M; Sisay, Abay; Zekri, Abdel-Rahman N; Gueye, Abdou Salam; Sangare, Abdoul K; Ouedraogo, Abdoul-Salam; Sow, Abdourahmane; Musa, Abdualmoniem O; Sesay, Abdul K; Abias, Abe G; Elzagheid, Adam I; Lagare, Adamou; Kemi, Adedotun-Sulaiman; Abar, Aden Elmi; Johnson, Adeniji A; Fowotade, Adeola; Oluwapelumi, Adeyemi O; Amuri, Adrienne A; Juru, Agnes; Kandeil, Ahmed; Mostafa, Ahmed; Rebai, Ahmed; Sayed, Ahmed; Kazeem, Akano; Balde, Aladje; Christoffels, Alan; Trotter, Alexander J; Campbell, Allan; Keita, Alpha K; Kone, Amadou; Bouzid, Amal; Souissi, Amal; Agweyu, Ambrose; Naguib, Amel; Gutierrez, Ana V; Nkeshimana, Anatole; Page, Andrew J; Yadouleton, Anges; Vinze, Anika; Happi, Anise N; Chouikha, Anissa; Iranzadeh, Arash; Maharaj, Arisha; Batchi-Bouyou, Armel L; Ismail, Arshad; Sylverken, Augustina A; Goba, Augustine; Femi, Ayoade; Sijuwola, Ayotunde E; Marycelin, Baba; Salako, Babatunde L; Oderinde, Bamidele S; Bolajoko, Bankole; Diarra, Bassirou; Herring, Belinda L; Tsofa, Benjamin; Lekana-Douki, Bernard; Mvula, Bernard; Njanpop-Lafourcade, Berthe-Marie; Marondera, Blessing T; Khaireh, Bouh Abdi; Kouriba, Bourema; Adu, Bright; Pool, Brigitte; McInnis, Bronwyn; Brook, Cara; Williamson, Carolyn; Nduwimana, Cassien; Anscombe, Catherine; Pratt, Catherine B; Scheepers, Cathrine; Akoua-Koffi, Chantal G; Agoti, Charles N; Mapanguy, Chastel M; Loucoubar, Cheikh; Onwuamah, Chika K; Ihekweazu, Chikwe; Malaka, Christian N; Peyrefitte, Christophe; Grace, Chukwa; Omoruyi, Chukwuma E; Rafaï, Clotaire D; Morang'a, Collins M; Erameh, Cyril; Lule, Daniel B; Bridges, Daniel J; Mukadi-Bamuleka, Daniel; Park, Danny; Rasmussen, David A; Baker, David; Nokes, David J; Ssemwanga, Deogratius; Tshiabuila, Derek; Amuzu, Dominic SY; Goedhals, Dominique; Grant, Donald S; Omuoyo, Donwilliams O; Maruapula, Dorcas; Wanjohi, Dorcas W; Foster-Nyarko, Ebenezer; Lusamaki, Eddy K; Simulundu, Edgar; Ong'era, Edidah M; Ngabana, Edith N; Abworo, Edward O; Otieno, Edward; Shumba, Edwin; Barasa, Edwine; Ahmed, El Bara; Ahmed, Elhadi A; Lokilo, Emmanuel; Mukantwari, Enatha; Philomena, Eromon; Belarbi, Essia; Simon-Loriere, Etienne; Anoh, Etilé A; Manuel, Eusebio; Leendertz, Fabian; Taweh, Fahn M; Wasfi, Fares; Abdelmoula, Fatma; Takawira, Faustinos T; Derrar, Fawzi; Ajogbasile, Fehintola V; Treurnicht, Florette; Onikepe, Folarin; Ntoumi, Francine; Muyembe, Francisca M; Ragomzingba, Frank EZ; Dratibi, Fred A; Iyanu, Fred-Akintunwa; Mbunsu, Gabriel K; Thilliez, Gaetan; Kay, Gemma L; Akpede, George O; van Zyl, Gert U; Awandare, Gordon A; Kpeli, Grace S; Schubert, Grit; Maphalala, Gugu P; Ranaivoson, Hafaliana C; Omunakwe, Hannah E; Onywera, Harris; Abe, Haruka; Karray, Hela; Nansumba, Hellen; Triki, Henda; Kadjo, Herve Albéric Adje; Elgahzaly, Hesham; Gumbo, Hlanai; Mathieu, Hota; Kavunga-Membo, Hugo; Smeti, Ibtihel; Olawoye, Idowu B; Adetifa, Ifedayo MO; Odia, Ikponmwosa; Ben Boubaker, Ilhem Boutiba; Muhammad, Iluoreh Ahmed; Ssewanyana, Isaac; Wurie, Isatta; Konstantinus, Iyaloo S; Halatoko, Jacqueline Wemboo Afiwa; Ayei, James; Sonoo, Janaki; Makangara, Jean-Claude C; Tamfum, Jean-Jacques M; Heraud, Jean-Michel; Shaffer, Jeffrey G; Giandhari, Jennifer; Musyoki, Jennifer; Nkurunziza, Jerome; Uwanibe, Jessica N; Bhiman, Jinal N; Yasuda, Jiro; Morais, Joana; Kiconco, Jocelyn; Sandi, John D; Huddleston, John; Odoom, John K; Morobe, John M; Gyapong, John O; Kayiwa, John T; Okolie, Johnson C; Xavier, Joicymara S; Gyamfi, Jones; Wamala, Joseph F; Bonney, Joseph HK; Nyandwi, Joseph; Everatt, Josie; Nakaseegu, Joweria; Ngoi, Joyce M; Namulondo, Joyce; Oguzie, Judith U; Andeko, Julia C; Lutwama, Julius J; Mogga, Juma JH; O'Grady, Justin; Siddle, Katherine J; Victoir, Kathleen; Adeyemi, Kayode T; Tumedi, Kefentse A; Carvalho, Kevin S; Mohammed, Khadija Said; Dellagi, Koussay; Musonda, Kunda G; Duedu, Kwabena O; Fki-Berrajah, Lamia; Singh, Lavanya; Kepler, Lenora M; Biscornet, Leon; de Oliveira Martins, Leonardo; Chabuka, Lucious; Olubayo, Luicer; Ojok, Lul Deng; Deng, Lul Lojok; Ochola-Oyier, Lynette I; Tyers, Lynn; Mine, Madisa; Ramuth, Magalutcheemee; Mastouri, Maha; ElHefnawi, Mahmoud; Mbanne, Maimouna; Matsheka, Maitshwarelo I; Kebabonye, Malebogo; Diop, Mamadou; Momoh, Mambu; Lima Mendonça, Maria da Luz; Venter, Marietjie; Paye, Marietou F; Faye, Martin; Nyaga, Martin M; Mareka, Mathabo; Damaris, Matoke-Muhia; Mburu, Maureen W; Mpina, Maximillian G; Owusu, Michael; Wiley, Michael R; Tatfeng, Mirabeau Y; Ayekaba, Mitoha Ondo'o; Abouelhoda, Mohamed; Beloufa, Mohamed Amine; Seadawy, Mohamed G; Khalifa, Mohamed K; Matobo, Mooko Marethabile; Kane, Mouhamed; Salou, Mounerou; Mbulawa, Mphaphi B; Mwenda, Mulenga; Allam, Mushal; Phan, My VT; Abid, Nabil; Rujeni, Nadine; Abuzaid, Nadir; Ismael, Nalia; Elguindy, Nancy; Top, Ndeye Marieme; Dia, Ndongo; Mabunda, Nédio; Hsiao, Nei-Yuan; Silochi, Nelson Boricó; Francisco, Ngiambudulu M; Saasa, Ngonda; Bbosa, Nicholas; Murunga, Nickson; Gumede, Nicksy; Wolter, Nicole; Sitharam, Nikita; Ndodo, Nnaemeka; Ajayi, Nnennaya A; Tordo, Noël; Mbhele, Nokuzola; Razanajatovo, Norosoa H; Iguosadolo, Nosamiefan; Mba, Nwando; Kingsley, Ojide C; Sylvanus, Okogbenin; Femi, Oladiji; Adewumi, Olubusuyi M; Testimony, Olumade; Ogunsanya, Olusola A; Fakayode, Oluwatosin; Ogah, Onwe E; Oludayo, Ope-Ewe; Faye, Ousmane; Smith-Lawrence, Pamela; Ondoa, Pascale; Combe, Patrice; Nabisubi, Patricia; Semanda, Patrick; Oluniyi, Paul E; Arnaldo, Paulo; Quashie, Peter Kojo; Okokhere, Peter O; Bejon, Philip; Dussart, Philippe; Bester, Phillip A; Mbala, Placide K; Kaleebu, Pontiano; Abechi, Priscilla; El-Shesheny, Rabeh; Joseph, Rageema; Aziz, Ramy Karam; Essomba, René G; Ayivor-Djanie, Reuben; Njouom, Richard; Phillips, Richard O; Gorman, Richmond; Kingsley, Robert A; Neto Rodrigues, Rosa Maria DESA; Audu, Rosemary A; Carr, Rosina AA; Gargouri, Saba; Masmoudi, Saber; Bootsma, Sacha; Sankhe, Safietou; Mohamed, Sahra Isse; Femi, Saibu; Mhalla, Salma; Hosch, Salome; Kassim, Samar Kamal; Metha, Samar; Trabelsi, Sameh; Agwa, Sara Hassan; Mwangi, Sarah Wambui; Doumbia, Seydou; Makiala-Mandanda, Sheila; Aryeetey, Sherihane; Ahmed, Shymaa S; Ahmed, Side Mohamed; Elhamoumi, Siham; Moyo, Sikhulile; Lutucuta, Silvia; Gaseitsiwe, Simani; Jalloh, Simbirie; Andriamandimby, Soa Fy; Oguntope, Sobajo; Grayo, Solène; Lekana-Douki, Sonia; Prosolek, Sophie; Ouangraoua, Soumeya; van Wyk, Stephanie; Schaffner, Stephen F; Kanyerezi, Stephen; Ahuka-Mundeke, Steve; Rudder, Steven; Pillay, Sureshnee; Nabadda, Susan; Behillil, Sylvie; Budiaki, Sylvie L; van der Werf, Sylvie; Mashe, Tapfumanei; Mohale, Thabo; Le-Viet, Thanh; Velavan, Thirumalaisamy P; Schindler, Tobias; Maponga, Tongai G; Bedford, Trevor; Anyaneji, Ugochukwu J; Chinedu, Ugwu; Ramphal, Upasana; George, Uwem E; Enouf, Vincent; Nene, Vishvanath; Gorova, Vivianne; Roshdy, Wael H; Karim, Wasim Abdul; Ampofo, William K; Preiser, Wolfgang; Choga, Wonderful T; Ahmed, Yahaya Ali; Ramphal, Yajna; Bediako, Yaw; Naidoo, Yeshnee; Butera, Yvan; de Laurent, Zaydah R; Africa Pathogen Genomics Initiative (Africa PGI)‡; 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Thomson, Nicholas M; Gilroy, Rachel; Getino, Maria; Foster-Nyarko, Ebenezer; van Vliet, Arnoud HM; La Ragione, Roberto M; Pallen, Mark J; (2022) Remarkable genomic diversity among Escherichia isolates recovered from healthy chickens. PeerJ – the Journal of Life & Environmental Sciences, 10. e12935-. ISSN 2167-8359 DOI: https://doi.org/10.7717/peerj.12935

Chaguza, Chrispin; Senghore, Madikay; Bojang, Ebrima; Lo, Stephanie W; Ebruke, Chinelo; Gladstone, Rebecca A; Tientcheu, Peggy-Estelle; Bancroft, Rowan E; Worwui, Archibald; Foster-Nyarko, Ebenezer; +10 more... Ceesay, Fatima; Okoi, Catherine; McGee, Lesley; Klugman, Keith P; Breiman, Robert F; Barer, Michael R; Adegbola, Richard A; Antonio, Martin; Bentley, Stephen D; Kwambana-Adams, Brenda A; (2021) Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life. Frontiers in pediatrics, 8. 587730-. ISSN 2296-2360 DOI: https://doi.org/10.3389/fped.2020.587730

Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ikumapayi, Usman N; Sarwar, Golam; Okoi, Catherine; Tientcheu, Peggy-Estelle Maguiagueu; Defernez, Marianne; O'Grady, Justin; Antonio, Martin; Pallen, Mark J; (2021) Genomic diversity of Escherichia coli from healthy children in rural Gambia. PeerJ, 9. e10572-. ISSN 2167-8359 DOI: https://doi.org/10.7717/peerj.10572

Gilroy, Rachel; Ravi, Anuradha; Getino, Maria; Pursley, Isabella; Horton, Daniel L; Alikhan, Nabil-Fareed; Baker, Dave; Gharbi, Karim; Hall, Neil; Watson, Mick; +10 more... Adriaenssens, Evelien M; Foster-Nyarko, Ebenezer; Jarju, Sheikh; Secka, Arss; Antonio, Martin; Oren, Aharon; Chaudhuri, Roy R; La Ragione, Roberto; Hildebrand, Falk; Pallen, Mark J; (2021) Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture. PeerJ, 9. e10941-. ISSN 2167-8359 DOI: https://doi.org/10.7717/peerj.10941

Jabang, Sona; Erhart, Annette; Darboe, Saffiatou; Baldeh, Aru-Kumba; Delforge, Valerie; Watson, Gabriella; Foster-Nyarko, Ebenezer; Salaudeen, Rasheed; Lawal, Bolarinde; Mackenzie, Grant; +4 more... Botteaux, Anne; Antonio, Martin; Smeesters, Pierre R; On Behalf Of The Mrcg StrepA Study Group; (2021) Molecular Epidemiology of Group A Streptococcus Infections in The Gambia. Vaccines, 9 (2). p. 124. DOI: https://doi.org/10.3390/vaccines9020124

Sarwar, Muhammad Bilal; Yasir, Muhammad; Alikhan, Nabil-Fareed; Afzal, Nadeem; de Oliveira Martins, Leonardo; Le Viet, Thanh; Trotter, Alexander J; Prosolek, Sophie J; Kay, Gemma L; Foster-Nyarko, Ebenezer; +10 more... Rudder, Steven; Baker, David J; Muntaha, Sidra Tul; Roman, Muhammad; Webber, Mark A; Shafiq, Almina; Shabbir, Bilquis; Akram, Javed; Page, Andrew J; Jahan, Shah; (2021) SARS-CoV-2 variants of concern dominate in Lahore, Pakistan in April 2021. Microbial Genomics, 7 (11). DOI: https://doi.org/10.1099/mgen.0.000693

Sarwar, Muhammad Bilal; Yasir, Muhammad; Alikhan, Nabil-Fareed; Afzal, Nadeem; de Oliveira Martins, Leonardo; Viet, Thanh Le; Trotter, Alexander J; Prosolek, Sophie J; Kay, Gemma L; Foster-Nyarko, Ebenezer; +10 more... Rudder, Steven; Baker, David J; Sidra-tul-muntaha; Roman, Muhammad; Webber, Mark A; Shafiq, Almina; Shabir, Balqees; Akram, Javed; Page, Andrew J; Jahan, Shah; (2021) SARS-CoV-2 variants of concern dominate in Lahore, Pakistan in April 2021. medRxiv preprint. ISSN 1468-5833 DOI: https://doi.org/10.1101/2021.06.04.21258352

Senghore, Madikay; Tientcheu, Peggy-Estelle; Worwui, Archibald Kwame; Jarju, Sheikh; Okoi, Catherine; Suso, Sambou MS; Foster-Nyarko, Ebenezer; Ebruke, Chinelo; Sonko, Mohamadou; Kourna, Mamdou Hama; +19 more... Agossou, Joseph; Tsolenyanu, Enyonam; Renner, Lorna Awo; Ansong, Daniel; Sanneh, Bakary; Cisse, Catherine Boni; Boula, Angeline; Miwanda, Berthe; Lo, Stephanie W; Gladstone, Rebecca A; Schwartz, Stephanie; Hawkins, Paulina; McGee, Lesley; Klugman, Keith P; Breiman, Robert F; Bentley, Stephen D; Mwenda, Jason M; Kwambana-Adams, Brenda Anna; Antonio, Martin; (2021) Phylogeography and resistome of pneumococcal meningitis in West Africa before and after vaccine introduction. Microbial genomics, 7 (7). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000506

Wilkinson, Eduan; Giovanetti, Marta; Tegally, Houriiyah; San, James E; Lessells, Richard; Cuadros, Diego; Martin, Darren P; Rasmussen, David A; Zekri, Abdel-Rahman N; Sangare, Abdoul K; +292 more... Ouedraogo, Abdoul-Salam; Sesay, Abdul K; Priscilla, Abechi; Kemi, Adedotun-Sulaiman; Olubusuyi, Adewunmi M; Oluwapelumi, Adeyemi OO; Hammami, Adnène; Amuri, Adrienne A; Sayed, Ahmad; Ouma, Ahmed EO; Elargoubi, Aida; Ajayi, Nnennaya A; Victoria, Ajogbasile F; Kazeem, Akano; George, Akpede; Trotter, Alexander J; Yahaya, Ali A; Keita, Alpha K; Diallo, Amadou; Kone, Amadou; Souissi, Amal; Chtourou, Amel; Gutierrez, Ana V; Page, Andrew J; Vinze, Anika; Iranzadeh, Arash; Lambisia, Arnold; Ismail, Arshad; Rosemary, Audu; Sylverken, Augustina; Femi, Ayoade; Ibrahimi, Azeddine; Marycelin, Baba; Oderinde, Bamidele S; Bolajoko, Bankole; Dhaala, Beatrice; Herring, Belinda L; Njanpop-Lafourcade, Berthe-Marie; Kleinhans, Bronwyn; McInnis, Bronwyn; Tegomoh, Bryan; Brook, Cara; Pratt, Catherine B; Scheepers, Cathrine; Akoua-Koffi, Chantal G; Agoti, Charles N; Peyrefitte, Christophe; Daubenberger, Claudia; Morang'a, Collins M; Nokes, D James; Amoako, Daniel G; Bugembe, Daniel L; Park, Danny; Baker, David; Doolabh, Deelan; Ssemwanga, Deogratius; Tshiabuila, Derek; Bassirou, Diarra; Amuzu, Dominic SY; Goedhals, Dominique; Omuoyo, Donwilliams O; Maruapula, Dorcas; Foster-Nyarko, Ebenezer; Lusamaki, Eddy K; Simulundu, Edgar; Ong'era, Edidah M; Ngabana, Edith N; Shumba, Edwin; El Fahime, Elmostafa; Lokilo, Emmanuel; Mukantwari, Enatha; Philomena, Eromon; Belarbi, Essia; Simon-Loriere, Etienne; Anoh, Etilé A; Leendertz, Fabian; Ajili, Faida; Enoch, Fakayode O; Wasfi, Fares; Abdelmoula, Fatma; Mosha, Fausta S; Takawira, Faustinos T; Derrar, Fawzi; Bouzid, Feriel; Onikepe, Folarin; Adeola, Fowotade; Muyembe, Francisca M; Tanser, Frank; Dratibi, Fred A; Mbunsu, Gabriel K; Thilliez, Gaetan; Kay, Gemma L; Githinji, George; van Zyl, Gert; Awandare, Gordon A; Schubert, Grit; Maphalala, Gugu P; Ranaivoson, Hafaliana C; Lemriss, Hajar; Anise, Happi; Abe, Haruka; Karray, Hela H; Nansumba, Hellen; Elgahzaly, Hesham A; Gumbo, Hlanai; Smeti, Ibtihel; Ayed, Ikhlas B; Odia, Ikponmwosa; Ben Boubaker, Ilhem Boutiba; 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Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thilliez, Gaëtan; Thomson, Nicholas; Baker, David; Kay, Gemma; Cramer, Jennifer D; O’Grady, Justin; Antonio, Martin; +1 more... Pallen, Mark J; (2020) Genomic diversity of<i>Escherichia coli</i>isolates from non-human primates in the Gambia. Biorxiv. DOI: https://doi.org/10.1101/2020.02.29.971309

Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thomson, Nicholas M; Jarju, Sheikh; Kwambana-Adams, Brenda A; Secka, Arss; O'Grady, Justin; Antonio, Martin; Pallen, Mark John; (2020) Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia. Microbial Genomics, 7 (1). pp. 1-15. DOI: https://doi.org/10.1099/mgen.0.000484

Ravi, Anuradha; Halstead, Fenella D; Bamford, Amy; Casey, Anna; Thomson, Nicholas M; van Schaik, Willem; Snelson, Catherine; Goulden, Robert; Foster-Nyarko, Ebenezer; Savva, George M; +3 more... Whitehouse, Tony; Pallen, Mark J; Oppenheim, Beryl A; (2019) Loss of microbial diversity and pathogen domination of the gut microbiota in critically ill patients. Microbial genomics, 5 (9). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000293

Kwambana-Adams, Brenda A; Amaza, Rahab C; Okoi, Catherine; Rabiu, Murtala; Worwui, Archibald; Foster-Nyarko, Ebenezer; Ebruke, Bernard; Sesay, Abdul K; Senghore, Madikay; Umar, Abdullahi S; +31 more... Usman, Rabi; Atiku, Adamu; Abdullahi, Garba; Buhari, Yahaya; Sani, Rabiu; Bako, Husaini U; Abdullahi, Bashir; Yarima, Alliyu I; Sikiru, Badaru; Moses, Aderinola Olaolu; Popoola, Michael O; Ekeng, Eme; Olayinka, Adebola; Mba, Nwando; Kankia, Adamu; Mamadu, Ibrahim N; Okudo, Ifeanyi; Stephen, Mary; Ronveaux, Olivier; Busuttil, Jason; Mwenda, Jason M; Abdulaziz, Mohammed; Gummi, Sulaiman A; Adedeji, Adebayo; Bita, Andre; Omar, Linda; Djingarey, Mamoudou Harouna; Alemu, Wondimagegnehu; D'Alessandro, Umberto; Ihekweazu, Chikwe; Antonio, Martin; (2018) Meningococcus serogroup C clonal complex ST-10217 outbreak in Zamfara State, Northern Nigeria. Scientific reports, 8 (1). 14194-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-32475-2

Foster-Nyarko, Ebenezer; Kwambana, Brenda; Ceesay, Fatima; Jawneh, Kaddijatou; Darboe, Saffiatou; Mulwa, Sarah N; Ceesay, Buntung; Secka, Ousman O; Adetifa, Ifedayo; Antonio, Martin; (2017) Incidence of macrolide-lincosamide-streptogramin B resistance amongst beta-haemolytic streptococci in The Gambia. BMC research notes, 10 (1). 106-. ISSN 1756-0500 DOI: https://doi.org/10.1186/s13104-017-2427-x

Kwambana-Adams, Brenda; Hanson, Blake; Worwui, Archibald; Agbla, Schadrac; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Ebruke, Chinelo; Egere, Uzochukwu; Zhou, Yanjiao; Ndukum, Maze; +5 more... Sodergren, Erica; Barer, Michael; Adegbola, Richard; Weinstock, George; Antonio, Martin; (2017) Rapid replacement by non-vaccine pneumococcal serotypes may mitigate the impact of the pneumococcal conjugate vaccine on nasopharyngeal bacterial ecology. Scientific reports, 7 (1). 8127-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-08717-0

Le Doare, Kirsty; Faal, Amadou; Jaiteh, Mustapha; Sarfo, Francess; Taylor, Stephen; Warburton, Fiona; Humphries, Holly; Birt, Jessica; Jarju, Sheikh; Darboe, Saffiatou; +6 more... Clarke, Edward; Antonio, Martin; Foster-Nyarko, Ebenezer; Heath, Paul T; Gorringe, Andrew; Kampmann, Beate; (2017) Association between functional antibody against Group B Streptococcus and maternal and infant colonization in a Gambian cohort. VACCINE, 35 (22). pp. 2970-2978. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2017.04.013

Odutola, Aderonke; Ota, Martin OC; Antonio, Martin; Ogundare, Ezra O; Saidu, Yauba; Foster-Nyarko, Ebenezer; Owiafe, Patrick K; Ceesay, Fatima; Worwui, Archibald; Idoko, Olubukola T; +14 more... Owolabi, Olumuyiwa; Bojang, Abdoulie; Jarju, Sheikh; Drammeh, Isatou; Kampmann, Beate; Greenwood, Brian M; Alderson, Mark; Traskine, Magali; Devos, Nathalie; Schoonbroodt, Sonia; Swinnen, Kristien; Verlant, Vincent; Dobbelaere, Kurt; Borys, Dorota; (2017) Efficacy of a novel, protein-based pneumococcal vaccine against nasopharyngeal carriage of Streptococcus pneumoniae in infants: A phase 2, randomized, controlled, observer-blind study. Vaccine, 35 (19). pp. 2531-2542. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2017.03.071

Foster-Nyarko, Ebenezer; Kwambana, Brenda; Aderonke, Odutola; Ceesay, Fatima; Jarju, Sheikh; Bojang, Abdoulie; McLellan, Jessica; Jafali, James; Kampmann, Beate; Ota, Martin O; +2 more... Adetifa, Ifedayo; Antonio, Martin; (2016) Associations between nasopharyngeal carriage of Group B Streptococcus and other respiratory pathogens during early infancy. BMC microbiology, 16 (1). 97-. ISSN 1471-2180 DOI: https://doi.org/10.1186/s12866-016-0714-7

Kwambana-Adams, Brenda Anna; Asiedu-Bekoe, Franklin; Sarkodie, Badu; Afreh, Osei Kuffour; Kuma, George Khumalo; Owusu-Okyere, Godfred; Foster-Nyarko, Ebenezer; Ohene, Sally-Ann; Okot, Charles; Worwui, Archibald Kwame; +17 more... Okoi, Catherine; Senghore, Madikay; Otu, Jacob Kweku; Ebruke, Chinelo; Bannerman, Richard; Amponsa-Achiano, Kwame; Opare, David; Kay, Gemma; Letsa, Timothy; Kaluwa, Owen; Appiah-Denkyira, Ebenezer; Bampoe, Victor; Zaman, Syed MA; Pallen, Mark J; D'Alessandro, Umberto; Mwenda, Jason M; Antonio, Martin; (2016) An outbreak of pneumococcal meningitis among older children (≥5 years) and adults after the implementation of an infant vaccination programme with the 13-valent pneumococcal conjugate vaccine in Ghana. BMC infectious diseases, 16 (1). 575-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-016-1914-3

Manigart, Olivier; Okeakpu, Jacinta; Odutola, Aderonke; Jarju, Sheikh; Foster-Nyarko, Ebenezer; Diallo, Kanny; Roca, Anna; Kampmann, Beate; D'Alessandro, Umberto; Sow, Samba; +6 more... Antonio, Martin; Maiden, Martin J; Borrow, Ray; Stuart, James M; Trotter, Caroline L; Greenwood, Brian M; (2016) Alternative Molecular Methods for Improved Detection of Meningococcal Carriage and Measurement of Bacterial Density. Journal of clinical microbiology, 54 (11). pp. 2743-2748. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01428-16

Senghore, Madikay; Bayliss, Sion C; Kwambana-Adams, Brenda A; Foster-Nyarko, Ebenezer; Manneh, Jainaba; Dione, Michel; Badji, Henry; Ebruke, Chinelo; Doughty, Emma L; Thorpe, Harry A; +9 more... Jasinska, Anna J; Schmitt, Christopher A; Cramer, Jennifer D; Turner, Trudy R; Weinstock, George; Freimer, Nelson B; Pallen, Mark J; Feil, Edward J; Antonio, Martin; (2016) Transmission of Staphylococcus aureus from Humans to Green Monkeys in The Gambia as Revealed by Whole-Genome Sequencing. Applied and environmental microbiology, 82 (19). pp. 5910-5917. ISSN 0099-2240 DOI: https://doi.org/10.1128/AEM.01496-16

Bottomley, Christian; Bojang, Abdoulie; Smith, Peter G; Darboe, Ousainou; Antonio, Martin; Foster-Nyarko, Ebenezer; Kampmann, Beate; Greenwood, Brian; D'Alessandro, Umberto; Roca, Anna; (2015) The impact of childhood vaccines on bacterial carriage in the nasopharynx: a longitudinal study. Emerging themes in epidemiology, 12 (1). 1-. ISSN 1742-7622 DOI: https://doi.org/10.1186/s12982-014-0022-3

Kwambana-Adams, Brenda; Darboe, Saffiatou; Nabwera, Helen; Foster-Nyarko, Ebenezer; Ikumapayi, Usman N; Secka, Ousman; Betts, Modupeh; Bradbury, Richard; Wegmüller, Rita; Lawal, Bolarinde; +7 more... Saha, Debasish; Hossain, M Jahangir; Prentice, Andrew M; Kampmann, Beate; Anderson, Suzanne; Dalessandro, Umberto; Antonio, Martin; (2015) Salmonella Infections in The Gambia, 2005-2015. Clinical infectious diseases, 61 Sup (suppl ). S354-S362. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/civ781 Full text not available from this repository.

Odutola, Aderonke; Antonio, Martin; Owolabi, Olumuyiwa; Bojang, Abdoulie; Foster-Nyarko, Ebenezer; Donkor, Simon; Adetifa, Ifedayo; Taylor, Sylvia; Bottomley, Christian; Greenwood, Brian; +1 more... Ota, Martin; (2013) Comparison of the prevalence of common bacterial pathogens in the oropharynx and nasopharynx of gambian infants. PLOS ONE, 8 (9). e75558-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0075558