Baker, Stephen; Thomson, Nicholas; Weill, François-Xavier; Holt, Kathryn E; (2018) Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens. Science, 360 (6390). pp. 733-738. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.aar3777

Ho, Nhan Thi; Thompson, Corinne; Nhan, Le Nguyen Thanh; Van, Hoang Minh Tu; Dung, Nguyen Thanh; Tran My, Phuc; Quang, Vo Minh; Minh, Ngo Ngoc Quang; Tuan, Tran Anh; Hung, Nguyen Thanh; +6 more... Tuan, Ha Manh; Vinh Chau, Nguyen Van; Wolbers, Marcel; Thwaites, Guy E; Choisy, Marc; Baker, Stephen; (2018) Retrospective analysis assessing the spatial and temporal distribution of paediatric acute respiratory tract infections in Ho Chi Minh City, Vietnam. BMJ open, 8 (1). e016349-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2017-016349

Klemm, Elizabeth J; Shakoor, Sadia; Page, Andrew J; Qamar, Farah Naz; Judge, Kim; Saeed, Dania K; Wong, Vanessa K; Dallman, Timothy J; Nair, Satheesh; Baker, Stephen; +7 more... Shaheen, Ghazala; Qureshi, Shahida; Yousafzai, Mohammad Tahir; Saleem, Muhammad Khalid; Hasan, Zahra; Dougan, Gordon; Hasan, Rumina; (2018) Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to Fluoroquinolones and Third-Generation Cephalosporins. mBio, 9 (1). e00105-e00118. ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.00105-18

Van Nguyen, Dung; Van Nguyen, Cuong; Bonsall, David; Ngo, Tue Tri; Carrique-Mas, Juan; Pham, Anh Hong; Bryant, Juliet E; Thwaites, Guy; Baker, Stephen; Woolhouse, Mark; +1 more... Simmonds, Peter; (2018) Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam. Viruses, 10 (3). p. 102. ISSN 1999-4915 DOI: https://doi.org/10.3390/v10030102

Berto, Alessandra; Day, Jeremy; Van Vinh Chau, Nguyen; Thwaites, Guy E; My, Ngoc Nghiem; Baker, Stephen; Darton, Thomas C; (2017) Current challenges and possible solutions to improve access to care and treatment for hepatitis C infection in Vietnam: a systematic review. BMC infectious diseases, 17 (1). 260-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2360-6

Dung, Tran Thi Ngoc; Duy, Pham Thanh; Sessions, October M; Sangumathi, Uma K; Phat, Voong Vinh; Tam, Pham Thi Thanh; To, Nguyen Thi Nguyen; Phuc, Tran My; Hong Chau, Tran Thi; Chau, Nguyen Ngoc Minh; +4 more... Minh, Ngoc Nguyen; Thwaites, Guy E; Rabaa, Maia A; Baker, Stephen; (2017) A universal genome sequencing method for rotavirus A from human fecal samples which identifies segment reassortment and multi-genotype mixed infection. BMC genomics, 18 (1). 324-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-3714-6

Dyson, Zoe A; Thanh, Duy Pham; Bodhidatta, Ladaporn; Mason, Carl Jeffries; Srijan, Apichai; Rabaa, Maia A; Vinh, Phat Voong; Thanh, Tuyen Ha; Thwaites, Guy E; Baker, Stephen; +1 more... Holt, Kathryn E; (2017) Whole Genome Sequence Analysis of Salmonella Typhi Isolated in Thailand before and after the Introduction of a National Immunization Program. PLoS neglected tropical diseases, 11 (1). e0005274-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005274

Thi Ty Hang, Vu; Thi Han Ny, Nguyen; My Phuc, Tran; Thi Thanh Tam, Pham; Thao Huong, Dang; Dang Trung Nghia, Ho; Tran Anh Vu, Nguyen; Thi Hong Phuong, Pham; Van Xang, Nguyen; Dong, Nguyen; +9 more... Nhu Hiep, Pham; Van Hung, Nguyen; Tinh Hien, Tran; Rabaa, Maia; Thwaites, Guy E; Baker, Stephen; Van Tan, Le; van Doorn, H Rogier; VIZIONS consortium; (2017) Evaluation of the Luminex xTAG Respiratory Viral Panel FAST v2 assay for detection of multiple respiratory viral pathogens in nasal and throat swabs in Vietnam. Wellcome open research, 2. 80-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.12429.2

Zellweger, Raphaël M; Carrique-Mas, Juan; Limmathurotsakul, Direk; Day, Nicholas PJ; Thwaites, Guy E; Baker, Stephen; Southeast Asia Antimicrobial Resistance Network; (2017) A current perspective on antimicrobial resistance in Southeast Asia. The Journal of antimicrobial chemotherapy, 72 (11). pp. 2963-2972. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkx260

Arjyal, Amit; Basnyat, Buddha; Nhan, Ho Thi; Koirala, Samir; Giri, Abhishek; Joshi, Niva; Shakya, Mila; Pathak, Kamal Raj; Mahat, Saruna Pathak; Prajapati, Shanti Pradhan; +18 more... Adhikari, Nabin; Thapa, Rajkumar; Merson, Laura; Gajurel, Damodar; Lamsal, Kamal; Lamsal, Dinesh; Yadav, Bharat Kumar; Shah, Ganesh; Shrestha, Poojan; Dongol, Sabina; Karkey, Abhilasha; Thompson, Corinne N; Thieu, Nga Tran Vu; Thanh, Duy Pham; Baker, Stephen; Thwaites, Guy E; Wolbers, Marcel; Dolecek, Christiane; (2016) Gatifloxacin versus ceftriaxone for uncomplicated enteric fever in Nepal: an open-label, two-centre, randomised controlled trial. The Lancet infectious diseases, 16 (5). pp. 535-545. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(15)00530-7

Baker, Stephen; Hombach, Joachim; Marks, Florian; (2016) What Have We Learned From the Typhoid Fever Surveillance in Africa Program? Clinical infectious diseases, 62 Sup (Suppl ). S1-S3. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/civ675

Duong, Vu Thuy; Phat, Voong Vinh; Tuyen, Ha Thanh; Dung, Tran Thi Ngoc; Trung, Pham Duc; Minh, Pham Van; Tu, Le Thi Phuong; Campbell, James I; Le Phuc, Hoang; Ha, Ton Thi Thanh; +15 more... Ngoc, Nguyen Minh; Huong, Nguyen Thi Thanh; Tam, Pham Thi Thanh; Huong, Dang Thao; Xang, Nguyen Van; Dong, Nguyen; Phuong, Le Thi; Hung, Nguyen Van; Phu, Bui Duc; Phuc, Tran My; Thwaites, Guy E; Vi, Lu Lan; Rabaa, Maia A; Thompson, Corinne N; Baker, Stephen; (2016) Evaluation of Luminex xTAG Gastrointestinal Pathogen Panel Assay for Detection of Multiple Diarrheal Pathogens in Fecal Samples in Vietnam. Journal of clinical microbiology, 54 (4). pp. 1094-1100. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.03321-15

Im, Justin; Nichols, Chelsea; Bjerregaard-Andersen, Morten; Sow, Amy Gassama; Løfberg, Sandra; Tall, Adama; Pak, Gi Deok; Aaby, Peter; Baker, Stephen; Clemens, John D; +11 more... Espinoza, Ligia Maria Cruz; Konings, Frank; May, Jürgen; Monteiro, Mario; Niang, Aissatou; Panzner, Ursula; Park, Se Eun; Schütt-Gerowitt, Heidi; Wierzba, Thomas F; Marks, Florian; von Kalckreuth, Vera; (2016) Prevalence of Salmonella Excretion in Stool: A Community Survey in 2 Sites, Guinea-Bissau and Senegal. Clinical infectious diseases, 62 Sup (Suppl ). S50-S55. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/civ789 Full text not available from this repository.

International Typhoid Consortium; Wong, Vanessa K; Holt, Kathryn E; Okoro, Chinyere; Baker, Stephen; Pickard, Derek J; Marks, Florian; Page, Andrew J; Olanipekun, Grace; Munir, Huda; +22 more... Alter, Roxanne; Fey, Paul D; Feasey, Nicholas A; Weill, Francois-Xavier; Le Hello, Simon; Hart, Peter J; Kariuki, Samuel; Breiman, Robert F; Gordon, Melita A; Heyderman, Robert S; Jacobs, Jan; Lunguya, Octavie; Msefula, Chisomo; MacLennan, Calman A; Keddy, Karen H; Smith, Anthony M; Onsare, Robert S; De Pinna, Elizabeth; Nair, Satheesh; Amos, Ben; Dougan, Gordon; Obaro, Stephen; (2016) Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa. PLoS neglected tropical diseases, 10 (9). e0004781-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004781

Leung, Jacqueline M; Hong, Chau Tran Thi; Trung, Nghia Ho Dang; Thi, Hoa Nhu; Minh, Chau Nguyen Ngoc; Thi, Thuy Vu; Hong, Dinh Thanh; Man, Dinh Nguyen Huy; Knowles, Sarah CL; Wolbers, Marcel; +4 more... Hoang, Nhat Le Thanh; Thwaites, Guy; Graham, Andrea L; Baker, Stephen; (2016) The impact of albendazole treatment on the incidence of viral- and bacterial-induced diarrhea in school children in southern Vietnam: study protocol for a randomized controlled trial. Trials, 17 (1). 279-. ISSN 1745-6215 DOI: https://doi.org/10.1186/s13063-016-1406-1

Lu, Lu; Van Dung, Nguyen; Bryant, Juliet E; Carrique-Mas, Juan; Van Cuong, Nguyen; Anh, Pham Honh; Rabaa, Maia A; Baker, Stephen; Simmonds, Peter; Woolhouse, Mark E; (2016) Evolution and phylogeographic dissemination of endemic porcine picornaviruses in Vietnam. Virus evolution, 2 (1). vew001-. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vew001

Makendi, Carine; Page, Andrew J; Wren, Brendan W; Le Thi Phuong, Tu; Clare, Simon; Hale, Christine; Goulding, David; Klemm, Elizabeth J; Pickard, Derek; Okoro, Chinyere; +10 more... Hunt, Martin; Thompson, Corinne N; Phu Huong Lan, Nguyen; Tran Do Hoang, Nhu; Thwaites, Guy E; Le Hello, Simon; Brisabois, Anne; Weill, François-Xavier; Baker, Stephen; Dougan, Gordon; (2016) A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions. PLoS neglected tropical diseases, 10 (2). e0004446-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004446

Maude, Rapeephan R; Ghose, Aniruddha; Samad, Rasheda; de Jong, Hanna K; Fukushima, Masako; Wijedoru, Lalith; Hassan, Mahtab Uddin; Hossain, Md Amir; Karim, Md Rezaul; Sayeed, Abdullah Abu; +19 more... van den Ende, Stannie; Pal, Sujat; Zahed, ASM; Rahman, Wahid; Karnain, Rifat; Islam, Rezina; Tran, Dung Thi Ngoc; Ha, Tuyen Thanh; Pham, Anh Hong; Campbell, James I; van Doorn, H Rogier; Maude, Richard J; van der Poll, Tom; Wiersinga, W Joost; Day, Nicholas PJ; Baker, Stephen; Dondorp, Arjen M; Parry, Christopher M; Faiz, Md Abul; (2016) A prospective study of the importance of enteric fever as a cause of non-malarial febrile illness in patients admitted to Chittagong Medical College Hospital, Bangladesh. BMC infectious diseases, 16 (1). 567-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-016-1886-3

Pach, Alfred; Warren, Michelle; Chang, Irene; Im, Justin; Nichols, Chelsea; Meyer, Christian G; Pak, Gi Deok; Panzner, Ursula; Park, Se Eun; von Kalckreuth, Vera; +6 more... Baker, Stephen; Rabezanahary, Henintsoa; Rakotondrainiarivelo, Jean Philibert; Raminosoa, Tiana Mirana; Rakotozandrindrainy, Raphaël; Marks, Florian; (2016) A Qualitative Study Investigating Experiences, Perceptions, and Healthcare System Performance in Relation to the Surveillance of Typhoid Fever in Madagascar. Clinical infectious diseases, 62 Sup (suppl ). S69-S75. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/civ892 Full text not available from this repository.

Pham Thanh, Duy; Karkey, Abhilasha; Dongol, Sabina; Ho Thi, Nhan; Thompson, Corinne N; Rabaa, Maia A; Arjyal, Amit; Holt, Kathryn E; Wong, Vanessa; Tran Vu Thieu, Nga; +13 more... Voong Vinh, Phat; Ha Thanh, Tuyen; Pradhan, Ashish; Shrestha, Saroj Kumar; Gajurel, Damoder; Pickard, Derek; Parry, Christopher M; Dougan, Gordon; Wolbers, Marcel; Dolecek, Christiane; Thwaites, Guy E; Basnyat, Buddha; Baker, Stephen; (2016) A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure. eLife, 5 (MARCH2). e14003-. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.14003

Pham Thanh, Duy; Thanh Tuyen, Ha; Nguyen Thi Nguyen, To; Chung The, Hao; Wick, Ryan R; Thwaites, Guy E; Baker, Stephen; Holt, Kathryn E; (2016) Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate. The Journal of antimicrobial chemotherapy, 71 (8). pp. 2314-2317. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkw173 Full text not available from this repository.

Pham Thanh, Duy; Thompson, Corinne N; Rabaa, Maia A; Sona, Soeng; Sopheary, Sun; Kumar, Varun; Moore, Catrin; Tran Vu Thieu, Nga; Wijedoru, Lalith; Holt, Kathryn E; +8 more... Wong, Vanessa; Pickard, Derek; Thwaites, Guy E; Day, Nicholas; Dougan, Gordon; Turner, Paul; Parry, Christopher M; Baker, Stephen; (2016) The Molecular and Spatial Epidemiology of Typhoid Fever in Rural Cambodia. PLoS neglected tropical diseases, 10 (6). e0004785-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004785

Phan, My VT; Anh, Pham Hong; Cuong, Nguyen Van; Munnink, Bas B Oude; van der Hoek, Lia; My, Phuc Tran; Tri, Tue Ngo; Bryant, Juliet E; Baker, Stephen; Thwaites, Guy; +5 more... Woolhouse, Mark; Kellam, Paul; Rabaa, Maia A; Cotten, Matthew; VIZIONS Consortium; (2016) Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection. Virus evolution, 2 (2). vew027-. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vew027

Phu Huong Lan, Nguyen; Le Thi Phuong, Tu; Nguyen Huu, Hien; Thuy, Le; Mather, Alison E; Park, Se Eun; Marks, Florian; Thwaites, Guy E; Van Vinh Chau, Nguyen; Thompson, Corinne N; +1 more... Baker, Stephen; (2016) Invasive Non-typhoidal Salmonella Infections in Asia: Clinical Observations, Disease Outcome and Dominant Serovars from an Infectious Disease Hospital in Vietnam. PLoS neglected tropical diseases, 10 (8). e0004857-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004857

The, Hao Chung; Thanh, Duy Pham; Holt, Kathryn E; Thomson, Nicholas R; Baker, Stephen; (2016) The genomic signatures of Shigella evolution, adaptation and geographical spread. Nature reviews Microbiology, 14 (4). pp. 235-250. ISSN 1740-1526 DOI: https://doi.org/10.1038/nrmicro.2016.10 Full text not available from this repository.

Thi Khanh Nhu, Nguyen; Riordan, David W; Do Hoang Nhu, Tran; Thanh, Duy Pham; Thwaites, Guy; Huong Lan, Nguyen Phu; Wren, Brendan W; Baker, Stephen; Stabler, Richard A; (2016) The induction and identification of novel Colistin resistance mutations in Acinetobacter baumannii and their implications. Scientific reports, 6 (1). 28291-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep28291

Thompson, C; (2016) The epidemiology of paediatric diarrhoeal disease and Shigella infections in Ho Chi Minh City, Vietnam. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.02572614

Van Vinh Chau, Nguyen; Buu Chau, Le; Desquesnes, Marc; Herder, Stephane; Phu Huong Lan, Nguyen; Campbell, James I; Van Cuong, Nguyen; Yimming, Benjarat; Chalermwong, Piangjai; Jittapalapong, Sathaporn; +16 more... Ramon Franco, Jose; Tri Tue, Ngo; Rabaa, Maia A; Carrique-Mas, Juan; Pham Thi Thanh, Tam; Tran Vu Thieu, Nga; Berto, Alessandra; Thi Hoa, Ngo; Van Minh Hoang, Nguyen; Canh Tu, Nguyen; Khac Chuyen, Nguyen; Wills, Bridget; Tinh Hien, Tran; Thwaites, Guy E; Yacoub, Sophie; Baker, Stephen; (2016) A Clinical and Epidemiological Investigation of the First Reported Human Infection With the Zoonotic Parasite Trypanosoma evansi in Southeast Asia. Clinical infectious diseases, 62 (8). pp. 1002-1008. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciw052

Van Voorhis, Wesley C; Adams, John H; Adelfio, Roberto; Ahyong, Vida; Akabas, Myles H; Alano, Pietro; Alday, Aintzane; Alemán Resto, Yesmalie; Alsibaee, Aishah; Alzualde, Ainhoa; +177 more... Andrews, Katherine T; Avery, Simon V; Avery, Vicky M; Ayong, Lawrence; Baker, Mark; Baker, Stephen; Ben Mamoun, Choukri; Bhatia, Sangeeta; Bickle, Quentin; Bounaadja, Lotfi; Bowling, Tana; Bosch, Jürgen; Boucher, Lauren E; Boyom, Fabrice F; Brea, Jose; Brennan, Marian; Burton, Audrey; Caffrey, Conor R; Camarda, Grazia; Carrasquilla, Manuela; Carter, Dee; Belen Cassera, Maria; Chih-Chien Cheng, Ken; Chindaudomsate, Worathad; Chubb, Anthony; Colon, Beatrice L; Colón-López, Daisy D; Corbett, Yolanda; Crowther, Gregory J; Cowan, Noemi; D'Alessandro, Sarah; Le Dang, Na; Delves, Michael; DeRisi, Joseph L; Du, Alan Y; Duffy, Sandra; Abd El-Salam El-Sayed, Shimaa; Ferdig, Michael T; Fernández Robledo, José A; Fidock, David A; Florent, Isabelle; Fokou, Patrick VT; Galstian, Ani; Gamo, Francisco Javier; Gokool, Suzanne; Gold, Ben; Golub, Todd; Goldgof, Gregory M; Guha, Rajarshi; Guiguemde, W Armand; Gural, Nil; Guy, R Kiplin; Hansen, Michael AE; Hanson, Kirsten K; Hemphill, Andrew; Hooft van Huijsduijnen, Rob; Horii, Takaaki; Horrocks, Paul; Hughes, Tyler B; Huston, Christopher; Igarashi, Ikuo; Ingram-Sieber, Katrin; Itoe, Maurice A; Jadhav, Ajit; Naranuntarat Jensen, Amornrat; Jensen, Laran T; Jiang, Rays HY; Kaiser, Annette; Keiser, Jennifer; Ketas, Thomas; Kicka, Sebastien; Kim, Sunyoung; Kirk, Kiaran; Kumar, Vidya P; Kyle, Dennis E; Lafuente, Maria Jose; Landfear, Scott; Lee, Nathan; Lee, Sukjun; Lehane, Adele M; Li, Fengwu; Little, David; Liu, Liqiong; Llinás, Manuel; Loza, Maria I; Lubar, Aristea; Lucantoni, Leonardo; Lucet, Isabelle; Maes, Louis; Mancama, Dalu; Mansour, Nuha R; March, Sandra; McGowan, Sheena; Medina Vera, Iset; Meister, Stephan; Mercer, Luke; Mestres, Jordi; Mfopa, Alvine N; Misra, Raj N; Moon, Seunghyun; Moore, John P; Morais Rodrigues da Costa, Francielly; Müller, Joachim; Muriana, Arantza; Nakazawa Hewitt, Stephen; Nare, Bakela; Nathan, Carl; Narraidoo, Nathalie; Nawaratna, Sujeevi; Ojo, Kayode K; Ortiz, Diana; Panic, Gordana; Papadatos, George; Parapini, Silvia; Patra, Kailash; Pham, Ngoc; Prats, Sarah; Plouffe, David M; Poulsen, Sally-Ann; Pradhan, Anupam; Quevedo, Celia; Quinn, Ronald J; Rice, Christopher A; Abdo Rizk, Mohamed; Ruecker, Andrea; St Onge, Robert; Salgado Ferreira, Rafaela; Samra, Jasmeet; Robinett, Natalie G; Schlecht, Ulrich; Schmitt, Marjorie; Silva Villela, Filipe; Silvestrini, Francesco; Sinden, Robert; Smith, Dennis A; Soldati, Thierry; Spitzmüller, Andreas; Stamm, Serge Maximilian; Sullivan, David J; Sullivan, William; Suresh, Sundari; Suzuki, Brian M; Suzuki, Yo; Swamidass, S Joshua; Taramelli, Donatella; Tchokouaha, Lauve RY; Theron, Anjo; Thomas, David; Tonissen, Kathryn F; Townson, Simon; Tripathi, Abhai K; Trofimov, Valentin; Udenze, Kenneth O; Ullah, Imran; Vallieres, Cindy; Vigil, Edgar; Vinetz, Joseph M; Voong Vinh, Phat; Vu, Hoan; Watanabe, Nao-Aki; Weatherby, Kate; White, Pamela M; Wilks, Andrew F; Winzeler, Elizabeth A; Wojcik, Edward; Wree, Melanie; Wu, Wesley; Yokoyama, Naoaki; Zollo, Paul HA; Abla, Nada; Blasco, Benjamin; Burrows, Jeremy; Laleu, Benoît; Leroy, Didier; Spangenberg, Thomas; Wells, Timothy; Willis, Paul A; (2016) Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond. PLoS pathogens, 12 (7). e1005763-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1005763

Wong, Vanessa K; Baker, Stephen; Connor, Thomas R; Pickard, Derek; Page, Andrew J; Dave, Jayshree; Murphy, Niamh; Holliman, Richard; Sefton, Armine; Millar, Michael; +4 more... Dyson, Zoe A; Dougan, Gordon; Holt, Kathryn E; International Typhoid Consortium; (2016) An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid. Nature communications, 7 (1). 12827-. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms12827

Anders, Katherine L; Thompson, Corinne N; Thuy, Nguyen Thi Van; Nguyet, Nguyen Minh; Tu, Le Thi Phuong; Dung, Tran Thi Ngoc; Phat, Voong Vinh; Van, Nguyen Thi Hong; Hieu, Nguyen Trong; Tham, Nguyen Thi Hong; +5 more... Ha, Phan Thi Thanh; Lien, Le Bich; Chau, Nguyen Van Vinh; Baker, Stephen; Simmons, Cameron P; (2015) The epidemiology and aetiology of diarrhoeal disease in infancy in southern Vietnam: a birth cohort study. International journal of infectious diseases, 35. pp. 3-10. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2015.03.013

Baker, Kate S; Dallman, Timothy J; Ashton, Philip M; Day, Martin; Hughes, Gwenda; Crook, Paul D; Gilbart, Victoria L; Zittermann, Sandra; Allen, Vanessa G; Howden, Benjamin P; +19 more... Tomita, Takehiro; Valcanis, Mary; Harris, Simon R; Connor, Thomas R; Sintchenko, Vitali; Howard, Peter; Brown, Jeremy D; Petty, Nicola K; Gouali, Malika; Thanh, Duy Pham; Keddy, Karen H; Smith, Anthony M; Talukder, Kaisar A; Faruque, Shah M; Parkhill, Julian; Baker, Stephen; Weill, François-Xavier; Jenkins, Claire; Thomson, Nicholas R; (2015) Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study. The Lancet infectious diseases, 15 (8). pp. 913-921. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(15)00002-X Full text not available from this repository.

Baker, Stephen; (2015) Infectious disease. A return to the pre-antimicrobial era? Science (New York, NY), 347 (6226). pp. 1064-1066. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.aaa2868 Full text not available from this repository.

Carrique-Mas, Juan J; Tue, Ngo T; Bryant, Juliet E; Saylors, Karen; Cuong, Nguyen V; Hoa, Ngo T; An, Nguyen N; Hien, Vo B; Lao, Pham V; Tu, Nguyen C; +13 more... Chuyen, Nguyen K; Chuc, Nguyen TK; Tan, Dinh V; Duong, Hoang Van V; Toan, Tran K; Chi, Nguyen TY; Campbell, James; Rabaa, Maia A; Nadjm, Behzad; Woolhouse, Mark; Wertheim, Heiman; Thwaites, Guy; Baker, Stephen; (2015) The baseline characteristics and interim analyses of the high-risk sentinel cohort of the Vietnam Initiative on Zoonotic InfectiONS (VIZIONS). Scientific reports, 5 (1). 17965-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep17965

Chung The, Hao; Karkey, Abhilasha; Pham Thanh, Duy; Boinett, Christine J; Cain, Amy K; Ellington, Matthew; Baker, Kate S; Dongol, Sabina; Thompson, Corinne; Harris, Simon R; +11 more... Jombart, Thibaut; Le Thi Phuong, Tu; Tran Do Hoang, Nhu; Ha Thanh, Tuyen; Shretha, Shrijana; Joshi, Suchita; Basnyat, Buddha; Thwaites, Guy; Thomson, Nicholas R; Rabaa, Maia A; Baker, Stephen; (2015) A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae. EMBO molecular medicine, 7 (3). pp. 227-239. ISSN 1757-4676 DOI: https://doi.org/10.15252/emmm.201404767

Chung The, Hao; Rabaa, Maia A; Thanh, Duy Pham; Ruekit, Sirigade; Wangchuk, Sonam; Dorji, Tshering; Tshering, Kinzang Pem; Nguyen, To Nguyen Thi; Vinh, Phat Voong; Thanh, Tuyen Ha; +9 more... Minh, Chau Nguyen Ngoc; Turner, Paul; Sar, Poda; Thwaites, Guy; Holt, Kathryn E; Thomson, Nicholas R; Bodhidatta, Ladaporn; Jeffries Mason, Carl; Baker, Stephen; (2015) Introduction and establishment of fluoroquinolone-resistant Shigella sonnei into Bhutan. Microbial genomics, 1 (6). e000042-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000042

Le, Vien; Nhu, Nguyen Thi Khanh; Cerdeno-Tarraga, Ana; Campbell, James I; Tuyen, Ha Thanh; Nhu, Tran Do Hoang; Tam, Pham Thi Thanh; Schultsz, Constance; Thwaites, Guy; Thomson, Nicholas R; +1 more... Baker, Stephen; (2015) Genetic characterization of three qnrS1-harbouring multidrug-resistance plasmids and qnrS1-containing transposons circulating in Ho Chi Minh City, Vietnam. Journal of medical microbiology, 64 (8). pp. 869-878. ISSN 0022-2615 DOI: https://doi.org/10.1099/jmm.0.000100

Parry, Christopher M; Thieu, Nga Tran Vu; Dolecek, Christiane; Karkey, Abhilasha; Gupta, Ruchi; Turner, Paul; Dance, David; Maude, Rapeephan R; Ha, Vinh; Tran, Chinh Nguyen; +25 more... Thi, Phuong Le; Be, Bay Pham Van; Phi, La Tran Thi; Ngoc, Rang Nguyen; Ghose, Aniruddha; Dongol, Sabina; Campbell, James I; Thanh, Duy Pham; Thanh, Tuyen Ha; Moore, Catrin E; Sona, Soeng; Gaind, Rajni; Deb, Monorama; Anh, Ho Van; Van, Sach Nguyen; Tinh, Hien Tran; Day, Nicholas PJ; Dondorp, Arjen; Thwaites, Guy; Faiz, Mohamed Abul; Phetsouvanh, Rattanaphone; Newton, Paul; Basnyat, Buddha; Farrar, Jeremy J; Baker, Stephen; (2015) Clinically and microbiologically derived azithromycin susceptibility breakpoints for Salmonella enterica serovars Typhi and Paratyphi A. Antimicrobial agents and chemotherapy, 59 (5). pp. 2756-2764. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.04729-14

Parry, Christopher M; Thieu, Nga Tran Vu; Dolecek, Christiane; Karkey, Abhilasha; Gupta, Ruchi; Turner, Paul; Dance, David; Maude, Rapeephan R; Ha, Vinh; Tran, Chinh Nguyen; +25 more... Thi, Phuong Le; Be, Bay Pham Van; Phi, La Tran Thi; Ngoc, Rang Nguyen; Ghose, Aniruddha; Dongol, Sabina; Campbell, James I; Thanh, Duy Pham; Thanh, Tuyen Ha; Moore, Catrin E; Sona, Soeng; Gaind, Rajni; Deb, Monorama; Anh, Ho Van; Van, Sach Nguyen; Tinh, Hien Tran; Day, Nicholas PJ; Dondorp, Arjen; Thwaites, Guy; Faiz, Mohamed Abul; Phetsouvanh, Rattanaphone; Newton, Paul; Basnyat, Buddha; Farrar, Jeremy J; Baker, Stephen; (2015) Erratum for Parry et al., Clinically and microbiologically derived azithromycin susceptibility breakpoints for Salmonella enterica serovars Typhi and Paratyphi A. Antimicrobial agents and chemotherapy, 59 (7). 4364-. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.01014-15 Full text not available from this repository.

Rabaa, Maia A; Tue, Ngo Tri; Phuc, Tran My; Carrique-Mas, Juan; Saylors, Karen; Cotten, Matthew; Bryant, Juliet E; Nghia, Ho Dang Trung; Cuong, Nguyen Van; Pham, Hong Anh; +26 more... Berto, Alessandra; Phat, Voong Vinh; Dung, Tran Thi Ngoc; Bao, Long Hoang; Hoa, Ngo Thi; Wertheim, Heiman; Nadjm, Behzad; Monagin, Corina; van Doorn, H Rogier; Rahman, Motiur; Tra, My Phan Vu; Campbell, James I; Boni, Maciej F; Tam, Pham Thi Thanh; van der Hoek, Lia; Simmonds, Peter; Rambaut, Andrew; Toan, Tran Khanh; Van Vinh Chau, Nguyen; Hien, Tran Tinh; Wolfe, Nathan; Farrar, Jeremy J; Thwaites, Guy; Kellam, Paul; Woolhouse, Mark EJ; Baker, Stephen; (2015) The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases. EcoHealth, 12 (4). pp. 726-735. ISSN 1612-9202 DOI: https://doi.org/10.1007/s10393-015-1061-0

Schreiber, Fernanda; Kay, Sally; Frankel, Gad; Clare, Simon; Goulding, David; van de Vosse, Esther; van Dissel, Jaap T; Strugnell, Richard; Thwaites, Guy; Kingsley, Robert A; +2 more... Dougan, Gordon; Baker, Stephen; (2015) The Hd, Hj, and Hz66 flagella variants of Salmonella enterica serovar Typhi modify host responses and cellular interactions. Scientific reports, 5 (1). 7947-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep07947

Thompson, Corinne N; Blacksell, Stuart D; Paris, Daniel H; Arjyal, Amit; Karkey, Abhilasha; Dongol, Sabina; Giri, Abhishek; Dolecek, Christiane; Day, Nick; Baker, Stephen; +3 more... Thwaites, Guy; Farrar, Jeremy; Basnyat, Buddha; (2015) Undifferentiated febrile illness in Kathmandu, Nepal. The American journal of tropical medicine and hygiene, 92 (4). pp. 875-878. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.14-0709

Thompson, Corinne N; Duy, Pham Thanh; Baker, Stephen; (2015) The Rising Dominance of Shigella sonnei: An Intercontinental Shift in the Etiology of Bacillary Dysentery. PLoS neglected tropical diseases, 9 (6). e0003708-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0003708

Thompson, Corinne N; Le, Thi Phuong Tu; Anders, Katherine L; Nguyen, Trong Hieu; Lu, Lan Vi; Nguyen, Van Vinh Chau; Vu, Thuy Duong; Nguyen, Ngoc Minh Chau; Tran, Thi Hong Chau; Ha, Thanh Tuyen; +11 more... Tran, Vu Thieu Nga; Pham, Van Minh; Tran, Do Hoang Nhu; Le, Thi Quynh Nhi; Saul, Allan; Martin, Laura B; Podda, Audino; Gerke, Christiane; Thwaites, Guy; Simmons, Cameron P; Baker, Stephen; (2015) The transfer and decay of maternal antibody against Shigella sonnei in a longitudinal cohort of Vietnamese infants. Vaccine, 34 (6). pp. 783-790. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2015.12.047

Thompson, Corinne N; Phan, My VT; Hoang, Nguyen Van Minh; Minh, Pham Van; Vinh, Nguyen Thanh; Thuy, Cao Thu; Nga, Tran Thi Thu; Rabaa, Maia A; Duy, Pham Thanh; Dung, Tran Thi Ngoc; +19 more... Phat, Voong Vinh; Nga, Tran Vu Thieu; Tu, Le Thi Phuong; Tuyen, Ha Thanh; Yoshihara, Keisuke; Jenkins, Claire; Duong, Vu Thuy; Phuc, Hoang Le; Tuyet, Pham Thi Ngoc; Ngoc, Nguyen Minh; Vinh, Ha; Chinh, Nguyen Tran; Thuong, Tang Chi; Tuan, Ha Manh; Hien, Tran Tinh; Campbell, James I; Chau, Nguyen Van Vinh; Thwaites, Guy; Baker, Stephen; (2015) A prospective multi-center observational study of children hospitalized with diarrhea in Ho Chi Minh City, Vietnam. The American journal of tropical medicine and hygiene, 92 (5). pp. 1045-1052. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.14-0655

Thompson, Corinne N; Thieu, Nga Tran Vu; Vinh, Phat Voong; Duc, Anh Nguyen; Wolbers, Marcel; Vinh, Ha; Campbell, James I; Ngoc, Dung Tran Thi; Hoang, Nguyen Van Minh; Thanh, Tuyen Ha; +8 more... The, Hao Chung; Nguyen, To Nguyen Thi; Lan, Nguyen Phu Huong; Parry, Christopher M; Chau, Nguyen Van Vinh; Thwaites, Guy; Thanh, Duy Pham; Baker, Stephen; (2015) Clinical implications of reduced susceptibility to fluoroquinolones in paediatric Shigella sonnei and Shigella flexneri infections. The Journal of antimicrobial chemotherapy, 71 (3). pp. 807-815. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkv400

Thompson, Corinne N; Zelner, Jonathan L; Nhu, Tran Do Hoang; Phan, My Vt; Hoang Le, Phuc; Nguyen Thanh, Hung; Vu Thuy, Duong; Minh Nguyen, Ngoc; Ha Manh, Tuan; Van Hoang Minh, Tu; +8 more... Lu Lan, Vi; Nguyen Van Vinh, Chau; Tran Tinh, Hien; von Clemm, Emmiliese; Storch, Harry; Thwaites, Guy; Grenfell, Bryan T; Baker, Stephen; (2015) The impact of environmental and climatic variation on the spatiotemporal trends of hospitalized pediatric diarrhea in Ho Chi Minh City, Vietnam. Health & place, 35. pp. 147-154. ISSN 1353-8292 DOI: https://doi.org/10.1016/j.healthplace.2015.08.001

Tu, LTP; Hoang, NVM; Cuong, NV; Campbell, J; Bryant, JE; Hoa, NT; Kiet, BT; Thompson, C; Duy, DT; Phat, VV; +4 more... Hien, VB; Thwaites, G; Baker, S; Carrique-Mas, JJ; (2015) High levels of contamination and antimicrobial-resistant non-typhoidal Salmonella serovars on pig and poultry farms in the Mekong Delta of Vietnam. Epidemiology and infection, 143 (14). pp. 3074-3086. ISSN 0950-2688 DOI: https://doi.org/10.1017/S0950268815000102

Van Dung, Nguyen; Anh, Pham Hong; Van Cuong, Nguyen; Hoa, Ngo Thi; Carrique-Mas, Juan; Hien, Vo Be; Sharp, C; Rabaa, M; Berto, A; Campbell, James; +5 more... Baker, Stephen; Farrar, Jeremy; Woolhouse, Mark E; Bryant, Juliet E; Simmonds, Peter; (2015) Large-scale screening and characterization of enteroviruses and kobuviruses infecting pigs in Vietnam. The Journal of general virology, 97 (2). pp. 378-388. ISSN 0022-1317 DOI: https://doi.org/10.1099/jgv.0.000366 Full text not available from this repository.

Weinert, Lucy A; Chaudhuri, Roy R; Wang, Jinhong; Peters, Sarah E; Corander, Jukka; Jombart, Thibaut; Baig, Abiyad; Howell, Kate J; Vehkala, Minna; Välimäki, Niko; +17 more... Harris, David; Chieu, Tran Thi Bich; Chau, Nguyen Van Vinh; Campbell, James; Schultsz, Constance; Parkhill, Julian; Bentley, Stephen D; Langford, Paul R; Rycroft, Andrew N; Wren, Brendan W; Farrar, Jeremy; Baker, Stephen; Hoa, Ngo Thi; Holden, Matthew TG; Tucker, Alexander W; Maskell, Duncan J; BRaDP1T Consortium; (2015) Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis. Nature communications, 6 (1). 7272-. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms8272

Weinert, Lucy A; Chaudhuri, Roy R; Wang, Jinhong; Peters, Sarah E; Corander, Jukka; Jombart, Thibaut; Baig, Abiyad; Howell, Kate J; Vehkala, Minna; Välimäki, Niko; +17 more... Harris, David; Chieu, Tran Thi Bich; Van Vinh Chau, Nguyen; Campbell, James; Schultsz, Constance; Parkhill, Julian; Bentley, Stephen D; Langford, Paul R; Rycroft, Andrew N; Wren, Brendan W; Farrar, Jeremy; Baker, Stephen; Hoa, Ngo Thi; Holden, Matthew TG; Tucker, Alexander W; Maskell, Duncan J; BRaDP1T Consortium; (2015) Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis. Nature communications, 6 (1). 6740-. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms7740

Wong, Vanessa K; Baker, Stephen; Pickard, Derek J; Parkhill, Julian; Page, Andrew J; Feasey, Nicholas A; Kingsley, Robert A; Thomson, Nicholas R; Keane, Jacqueline A; Weill, François-Xavier; +64 more... Edwards, David J; Hawkey, Jane; Harris, Simon R; Mather, Alison E; Cain, Amy K; Hadfield, James; Hart, Peter J; Thieu, Nga Tran Vu; Klemm, Elizabeth J; Glinos, Dafni A; Breiman, Robert F; Watson, Conall H; Kariuki, Samuel; Gordon, Melita A; Heyderman, Robert S; Okoro, Chinyere; Jacobs, Jan; Lunguya, Octavie; Edmunds, W John; Msefula, Chisomo; Chabalgoity, Jose A; Kama, Mike; Jenkins, Kylie; Dutta, Shanta; Marks, Florian; Campos, Josefina; Thompson, Corinne; Obaro, Stephen; MacLennan, Calman A; Dolecek, Christiane; Keddy, Karen H; Smith, Anthony M; Parry, Christopher M; Karkey, Abhilasha; Mulholland, E Kim; Campbell, James I; Dongol, Sabina; Basnyat, Buddha; Dufour, Muriel; Bandaranayake, Don; Naseri, Take Toleafoa; Singh, Shalini Pravin; Hatta, Mochammad; Newton, Paul; Onsare, Robert S; Isaia, Lupeoletalalei; Dance, David; Davong, Viengmon; Thwaites, Guy; Wijedoru, Lalith; Crump, John A; De Pinna, Elizabeth; Nair, Satheesh; Nilles, Eric J; Thanh, Duy Pham; Turner, Paul; Soeng, Sona; Valcanis, Mary; Powling, Joan; Dimovski, Karolina; Hogg, Geoff; Farrar, Jeremy; Holt, Kathryn E; Dougan, Gordon; (2015) Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. Nature genetics, 47 (6). pp. 632-639. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3281 Full text not available from this repository.

Wyres, Kelly L; Gorrie, Claire; Edwards, David J; Wertheim, Heiman FL; Hsu, Li Yang; Van Kinh, Nguyen; Zadoks, Ruth; Baker, Stephen; Holt, Kathryn E; (2015) Extensive Capsule Locus Variation and Large-Scale Genomic Recombination within the Klebsiella pneumoniae Clonal Group 258. Genome biology and evolution, 7 (5). pp. 1267-1279. ISSN 1759-6653 DOI: https://doi.org/10.1093/gbe/evv062

Baker, Stephen; Karkey, Abhilasha; Parry, Christopher; (2014) Are we adequately prepared for the emergence of Salmonella enterica serovar Paratyphi A? The Lancet Global health, 2 (4). e195-e196. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(14)70009-9

Cotten, Matthew; Petrova, Velislava; Phan, My VT; Rabaa, Maia A; Watson, Simon J; Ong, Swee Hoe; Kellam, Paul; Baker, Stephen; (2014) Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting. Journal of virology, 88 (19). pp. 11056-11069. ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.01333-14

Dunstan, Sarah J; Hue, Nguyen Thi; Han, Buhm; Li, Zheng; Tram, Trinh Thi Bich; Sim, Kar Seng; Parry, Christopher M; Chinh, Nguyen Tran; Vinh, Ha; Lan, Nguyen Phu Huong; +26 more... Thieu, Nga Tran Vu; Vinh, Phat Voong; Koirala, Samir; Dongol, Sabina; Arjyal, Amit; Karkey, Abhilasha; Shilpakar, Olita; Dolecek, Christiane; Foo, Jia Nee; Phuong, Le Thi; Lanh, Mai Ngoc; Do, Tan; Aung, Tin; Hon, Do Nu; Teo, Yik Ying; Hibberd, Martin L; Anders, Katherine L; Okada, Yukinori; Raychaudhuri, Soumya; Simmons, Cameron P; Baker, Stephen; de Bakker, Paul IW; Basnyat, Buddha; Hien, Tran Tinh; Farrar, Jeremy J; Khor, Chiea Chuen; (2014) Variation at HLA-DRB1 is associated with resistance to enteric fever. Nature genetics, 46 (12). pp. 1333-1336. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3143 Full text not available from this repository.

Gunn, John S; Marshall, Joanna M; Baker, Stephen; Dongol, Sabina; Charles, Richelle C; Ryan, Edward T; (2014) Salmonella chronic carriage: epidemiology, diagnosis, and gallbladder persistence. Trends in microbiology, 22 (11). pp. 648-655. ISSN 0966-842X DOI: https://doi.org/10.1016/j.tim.2014.06.007 Full text not available from this repository.

Harrison, James W; Dung, Tran Thi Ngoc; Siddiqui, Fariha; Korbrisate, Sunee; Bukhari, Habib; Tra, My Phan Vu; Hoang, Nguyen Van Minh; Carrique-Mas, Juan; Bryant, Juliet; Campbell, James I; +5 more... Studholme, David J; Wren, Brendan W; Baker, Stephen; Titball, Richard W; Champion, Olivia L; (2014) Identification of possible virulence marker from Campylobacter jejuni isolates. Emerging infectious diseases, 20 (6). pp. 1026-1029. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2006.130635

Khauv, Phara; Turner, Paul; Soeng, Channy; Soeng, Sona; Moore, Catrin E; Bousfield, Rachel; Stoesser, Nicole; Emary, Kate; Thanh, Duy Pham; Baker, Stephen; +4 more... Hang, Vu Thi Ty; van Doorn, H Rogier; Day, Nicholas PJ; Parry, Christopher M; (2014) Ophthalmic infections in children presenting to Angkor Hospital for Children, Siem Reap, Cambodia. BMC research notes, 7 (1). 784-. ISSN 1756-0500 DOI: https://doi.org/10.1186/1756-0500-7-784

Lan, Nguyen Phu Huong; Nga, Tran Vu Thieu; Yen, Nguyen Thi Thu; Dung, Le Thi; Tuyen, Ha Thanh; Campbell, James I; Whitehorn, Jamie; Thwaites, Guy; Chau, Nguyen Van Vinh; Baker, Stephen; (2014) Two cases of bacteriemia caused by nontoxigenic, non-O1, non-O139 Vibrio cholerae isolates in Ho Chi Minh City, Vietnam. Journal of clinical microbiology, 52 (10). pp. 3819-3821. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01915-14

Näsström, Elin; Vu Thieu, Nga Tran; Dongol, Sabina; Karkey, Abhilasha; Voong Vinh, Phat; Ha Thanh, Tuyen; Johansson, Anders; Arjyal, Amit; Thwaites, Guy; Dolecek, Christiane; +3 more... Basnyat, Buddha; Baker, Stephen; Antti, Henrik; (2014) Salmonella Typhi and Salmonella Paratyphi A elaborate distinct systemic metabolite signatures during enteric fever. eLife, 3. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.03100

Parry, Christopher M; Thompson, Corinne; Vinh, Ha; Chinh, Nguyen Tran; Phuong, Le Thi; Ho, Vo Anh; Hien, Tran Tinh; Wain, John; Farrar, Jeremy J; Baker, Stephen; (2014) Risk factors for the development of severe typhoid fever in Vietnam. BMC infectious diseases, 14 (1). 73-. ISSN 1471-2334 DOI: https://doi.org/10.1186/1471-2334-14-73

Pham, Hong Anh; Carrique-Mas, Juan J; Nguyen, Van Cuong; Ngo, Thi Hoa; Nguyet, Lam Anh; Do, Tien Duy; Vo, Be Hien; Phan, Vu Tra My; Rabaa, Maia A; Farrar, Jeremy; +2 more... Baker, Stephen; Bryant, Juliet E; (2014) The prevalence and genetic diversity of group A rotaviruses on pig farms in the Mekong Delta region of Vietnam. Veterinary microbiology, 170 (3-4). pp. 258-265. ISSN 0378-1135 DOI: https://doi.org/10.1016/j.vetmic.2014.02.030

Pitzer, Virginia E; Bowles, Cayley C; Baker, Stephen; Kang, Gagandeep; Balaji, Veeraraghavan; Farrar, Jeremy J; Grenfell, Bryan T; (2014) Predicting the impact of vaccination on the transmission dynamics of typhoid in South Asia: a mathematical modeling study. PLoS neglected tropical diseases, 8 (1). e2642-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0002642

Thompson, Corinne N; Anders, Katherine L; Nhi, Le Thi Quynh; Tuyen, Ha Thanh; Van Minh, Pham; Tu, Le Thi Phuong; Nhu, Tran Do Hoang; Nhan, Nguyen Thi Thanh; Ly, Tran Thi Thao; Duong, Vu Thuy; +8 more... Vi, Lu Lan; Van Thuy, Nguyen Thi; Hieu, Nguyen Trong; Van Chau, Nguyen Vinh; Campbell, James I; Thwaites, Guy; Simmons, Cameron; Baker, Stephen; (2014) A cohort study to define the age-specific incidence and risk factors of Shigella diarrhoeal infections in Vietnamese children: a study protocol. BMC public health, 14 (1). 1289-. ISSN 1471-2458 DOI: https://doi.org/10.1186/1471-2458-14-1289

Andrews, Jason R; Prajapati, Krishna G; Eypper, Elizabeth; Shrestha, Poojan; Shakya, Mila; Pathak, Kamal R; Joshi, Niva; Tiwari, Priyanka; Risal, Manisha; Koirala, Samir; +11 more... Karkey, Abhilasha; Dongol, Sabina; Wen, Shawn; Smith, Amy B; Maru, Duncan; Basnyat, Buddha; Baker, Stephen; Farrar, Jeremy; Ryan, Edward T; Hohmann, Elizabeth; Arjyal, Amit; (2013) Evaluation of an electricity-free, culture-based approach for detecting typhoidal Salmonella bacteremia during enteric fever in a high burden, resource-limited setting. PLoS neglected tropical diseases, 7 (6). e2292-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0002292

Holt, Kathryn E; Thieu Nga, Tran Vu; Thanh, Duy Pham; Vinh, Ha; Kim, Dong Wook; Vu Tra, My Phan; Campbell, James I; Hoang, Nguyen Van Minh; Vinh, Nguyen Thanh; Minh, Pham Van; +20 more... Thuy, Cao Thu; Nga, Tran Thi Thu; Thompson, Corinne; Dung, Tran Thi Ngoc; Nhu, Nguyen Thi Khanh; Vinh, Phat Voong; Tuyet, Pham Thi Ngoc; Phuc, Hoang Le; Lien, Nguyen Thi Nam; Phu, Bui Duc; Ai, Nguyen Thi Thuy; Tien, Nguyen Manh; Dong, Nguyen; Parry, Christopher M; Hien, Tran Tinh; Farrar, Jeremy J; Parkhill, Julian; Dougan, Gordon; Thomson, Nicholas R; Baker, Stephen; (2013) Tracking the establishment of local endemic populations of an emergent enteric pathogen. Proceedings of the National Academy of Sciences of the United States of America, 110 (43). pp. 17522-17527. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1308632110 Full text not available from this repository.

Karkey, Abhilasha; Thompson, Corinne N; Tran Vu Thieu, Nga; Dongol, Sabina; Le Thi Phuong, Tu; Voong Vinh, Phat; Arjyal, Amit; Martin, Laura B; Rondini, Simona; Farrar, Jeremy J; +3 more... Dolecek, Christiane; Basnyat, Buddha; Baker, Stephen; (2013) Differential epidemiology of Salmonella Typhi and Paratyphi A in Kathmandu, Nepal: a matched case control investigation in a highly endemic enteric fever setting. PLoS neglected tropical diseases, 7 (8). e2391-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0002391

Kolader, Marion-Eliëtte; Vinh, Ha; Ngoc Tuyet, Pham Thi; Thompson, Corinne; Wolbers, Marcel; Merson, Laura; Campbell, James I; Ngoc Dung, Tran Thi; Manh Tuan, Ha; Vinh Chau, Nguyen Van; +3 more... Farrar, Jeremy; van Doorn, H Rogier; Baker, Stephen; (2013) An oral preparation of Lactobacillus acidophilus for the treatment of uncomplicated acute watery diarrhoea in Vietnamese children: study protocol for a multicentre, randomised, placebo-controlled trial. Trials, 14 (1). 27-. ISSN 1745-6215 DOI: https://doi.org/10.1186/1745-6215-14-27

Moore, Catrin E; Pan-Ngum, Wirichada; Wijedoru, Lalith PM; Sona, Soeng; Nga, Tran Vu Thieu; Duy, Pham Thanh; Vinh, Phat Voong; Chheng, Kheng; Kumar, Varun; Emary, Kate; +5 more... Carter, Michael; White, Lisa; Baker, Stephen; Day, Nicholas PJ; Parry, Christopher M; (2013) Evaluation of the diagnostic accuracy of a typhoid IgM flow assay for the diagnosis of typhoid fever in Cambodian children using a Bayesian latent class model assuming an imperfect gold standard. The American journal of tropical medicine and hygiene, 90 (1). pp. 114-120. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.13-0384

Pham Thanh, Duy; Tran Vu Thieu, Nga; Tran Thuy, Chau; Lodén, Martin; Tuin, Kiki; Campbell, James I; Van Minh Hoang, Nguyen; Voong Vinh, Phat; Farrar, Jeremy J; Holt, Kathryn E; +2 more... Dougan, Gordon; Baker, Stephen; (2013) Identification of Salmonella enterica serovar Typhi genotypes by use of rapid multiplex ligation-dependent probe amplification. Journal of clinical microbiology, 51 (9). pp. 2950-2958. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01010-13

Phu, Nguyen Hoan; Hoang Mai, Nguyen Thi; Nghia, Ho Dang Trung; Chau, Tran Thi Hong; Loc, Pham Phu; Thai, Le Hong; Phuong, Tran My; Thai, Cao Quang; Man, Dinh Nguyen Huy; Van Vinh Chau, Nguyen; +4 more... Nga, Tran Vu Thieu; Campbell, James; Baker, Stephen; Whitehorn, James; (2013) Fatal consequences of freshwater pearl diving. Lancet, 381 (9861). 176-. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(12)61730-9

Seth-Smith, Helena MB; Harris, Simon R; Skilton, Rachel J; Radebe, Frans M; Golparian, Daniel; Shipitsyna, Elena; Duy, Pham Thanh; Scott, Paul; Cutcliffe, Lesley T; O'Neill, Colette; +11 more... Parmar, Surendra; Pitt, Rachel; Baker, Stephen; Ison, Catherine A; Marsh, Peter; Jalal, Hamid; Lewis, David A; Unemo, Magnus; Clarke, Ian N; Parkhill, Julian; Thomson, Nicholas R; (2013) Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture. Genome research, 23 (5). pp. 855-866. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.150037.112 Full text not available from this repository.

Thompson, CN; Phan, VTM; Le, TPT; Pham, TNT; Hoang, LP; Ha, V; Nguyen, VMH; Pham, VM; Nguyen, TV; Cao, TT; +9 more... Tran, TTN; Nguyen, TTH; Dao, MT; Campbell, JI; Nguyen, TC; Tang, CT; Ha, MT; Farrar, J; Baker, S; (2013) Epidemiological features and risk factors of Salmonella gastroenteritis in children resident in Ho Chi Minh City, Vietnam. Epidemiology and infection, 141 (8). pp. 1604-1613. ISSN 0950-2688 DOI: https://doi.org/10.1017/S0950268812002014

Tra My, Phan Vu; Lam, Ha Minh; Thompson, Corinne N; Phuc, Hoang Le; Tuyet, Pham Thi Ngoc; Vinh, Ha; Hoang, Nguyen Van Minh; Minh, Phamvan; Vinh, Nguyen Thanh; Thuy, Cao Thu; +10 more... Nga, Tran Thi Thu; Hau, Nguyen Thi Thu; Chinh, Nguyen Tran; Thuong, Tang Chi; Tuan, Ha Manh; Campbell, James I; Clements, Archie CA; Farrar, Jeremy; Boni, Maciej F; Baker, Stephen; (2013) The dynamics of GII.4 Norovirus in Ho Chi Minh City, Vietnam. Infection, genetics and evolution, 18. pp. 335-343. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2013.04.014

Dongol, Sabina; Thompson, Corinne N; Clare, Simon; Nga, Tran Vu Thieu; Duy, Pham Thanh; Karkey, Abhilasha; Arjyal, Amit; Koirala, Samir; Khatri, Nely Shrestha; Maskey, Pukar; +8 more... Poudel, Sanjay; Jaiswal, Vijay Kumar; Vaidya, Sujan; Dougan, Gordon; Farrar, Jeremy J; Dolecek, Christiane; Basnyat, Buddha; Baker, Stephen; (2012) The microbiological and clinical characteristics of invasive salmonella in gallbladders from cholecystectomy patients in kathmandu, Nepal. PloS one, 7 (10). e47342-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0047342

Emary, Kate; Moore, Catrin E; Chanpheaktra, Ngoun; An, Khun Peng; Chheng, Kheng; Sona, Soeng; Duy, Pham Thanh; Nga, Tran Vu Thieu; Wuthiekanun, Vanaporn; Amornchai, Premjit; +7 more... Kumar, Varun; Wijedoru, Lalith; Stoesser, Nicole E; Carter, Michael J; Baker, Stephen; Day, Nicholas PJ; Parry, Christopher M; (2012) Enteric fever in Cambodian children is dominated by multidrug-resistant H58 Salmonella enterica serovar Typhi with intermediate susceptibility to ciprofloxacin. Transactions of the Royal Society of Tropical Medicine and Hygiene, 106 (12). pp. 718-724. ISSN 0035-9203 DOI: https://doi.org/10.1016/j.trstmh.2012.08.007 Full text not available from this repository.

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