Items where Author or Contributor is "Baker, S"

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Baker, KS; Dallman, TJ; Ashton, PM; Day, M; Hughes, G; Crook, PD; Gilbart, VL; Zittermann, S; Allen, VG; Howden, BP; +19 more... Tomita, T; Valcanis, M; Harris, SR; Connor, TR; Sintchenko, V; Howard, P; Brown, JD; Petty, NK; Gouali, M; Thanh, DP; Keddy, KH; Smith, AM; Talukder, KA; Faruque, SM; Parkhill, J; Baker, S; Weill, FX; Jenkins, C; Thomson, NR; (2015) Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study. The Lancet infectious diseases, 15 (8). pp. 913-21. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(15)00002-X Full text not available from this repository.

Baker, S; (2015) A return to the pre-antimicrobial era? Science (New York, NY), 347 (6226). pp. 1063-1065. ISSN 0036-8075 https://researchonline.lshtm.ac.uk/id/eprint/2159869 Full text not available from this repository.

Dunstan, SJ; Hue, NT; Han, B; Li, Z; Tram, TT; Sim, KS; Parry, CM; Chinh, NT; Vinh, H; Lan, NP; +26 more... Thieu, NT; Vinh, PV; Koirala, S; Dongol, S; Arjyal, A; Karkey, A; Shilpakar, O; Dolecek, C; Foo, JN; Phuong, leT; Lanh, MN; Do, T; Aung, T; Hon, doN; Teo, YY; Hibberd, ML; Anders, KL; Okada, Y; Raychaudhuri, S; Simmons, CP; Baker, S; de Bakker, PI; Basnyat, B; Hien, TT; Farrar, JJ; Khor, CC; (2014) Variation at HLA-DRB1 is associated with resistance to enteric fever. Nature genetics, 46 (12). pp. 1333-6. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3143 Full text not available from this repository.

Emary, K; Moore, CE; Chanpheaktra, N; An, KP; Chheng, K; Sona, S; Duy, PT; Nga, TV; Wuthiekanun, V; Amornchai, P; +7 more... Kumar, V; Wijedoru, L; Stoesser, NE; Carter, MJ; Baker, S; Day, NP; Parry, CM; (2012) Enteric fever in Cambodian children is dominated by multidrug-resistant H58 Salmonella enterica serovar Typhi with intermediate susceptibility to ciprofloxacin. Transactions of the Royal Society of Tropical Medicine and Hygiene, 106 (12). pp. 718-24. ISSN 0035-9203 DOI: https://doi.org/10.1016/j.trstmh.2012.08.007 Full text not available from this repository.

Gunn, JS; Marshall, JM; Baker, S; Dongol, S; Charles, RC; Ryan, ET; (2014) Salmonella chronic carriage: epidemiology, diagnosis, and gallbladder persistence. Trends in microbiology. ISSN 0966-842X DOI: https://doi.org/10.1016/j.tim.2014.06.007 Full text not available from this repository.

Holt, KE; Parkhill, J; Mazzoni, CJ; Roumagnac, P; Weill, FX; Goodhead, I; Rance, R; Baker, S; Maskell, DJ; Wain, J; +3 more... Dolecek, C; Achtman, M; Dougan, G; (2008) High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Nature genetics, 40 (8). pp. 987-93. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.195 Full text not available from this repository.

Holt, KathrynE; Tran Vu Thieu, Nga; Duy Pham, Thanh; Ha, Vinh; Kim, DongWook; My Phan Vu, Tra; Campbell, JamesI; Nguyen van Minh, Hoang; Nguyen Thanh, Vinh; Pham Van, Minh; +20 more... Cao Thu, Thuy; Tran Thi Thu, Nga; Thompson, Corinne; Tran Thi Ngoc, Dung; Nguyen Thi Khanh, Nhu; Phat Voong, Vinh; Pham Thi Ngoc, Tuyet; Hoang le, Phuc; Nguyen Thi Nam, Lien; Bui Duc, Phu; Nguyen Thi Thuy, Ai; Nguyen Manh, Tien; Nguyen, Dong; Parry, ChristopherM; Tran Tinh, Hien; Farrar, JeremyJ; Parkhill, Julian; Dougan, Gordon; Thomson, NicholasR; Baker, Stephen; (2013) Tracking the establishment of local endemic populations of an emergent enteric pathogen. Proceedings of the National Academy of Sciences of the United States of America, 110 (43). pp. 17522-17527. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1308632110 Full text not available from this repository.

Im, J; Nichols, C; Bjerregaard-Andersen, M; Sow, AG; Løfberg, S; Tall, A; Pak, GD; Aaby, P; Baker, S; Clemens, JD; +11 more... Espinoza, LM; Konings, F; May, J; Monteiro, M; Niang, A; Panzner, U; Park, SE; Schütt-Gerowitt, H; Wierzba, TF; Marks, F; von Kalckreuth, V; (2016) Prevalence of Salmonella Excretion in Stool: A Community Survey in 2 Sites, Guinea-Bissau and Senegal. Clinical infectious diseases, 62 Sup. S50-5. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/civ789 Full text not available from this repository.

Khatri, NS; Maskey, P; Poudel, S; Jaiswal, VK; Karkey, A; Koirala, S; Shakya, N; Agrawal, K; Arjyal, A; Basnyat, B; +4 more... Day, J; Farrar, J; Dolecek, C; Baker, S; (2009) Gallbladder carriage of Salmonella paratyphi A may be an important factor in the increasing incidence of this infection in South Asia. Annals of internal medicine, 150 (8). pp. 567-8. ISSN 0003-4819 DOI: https://doi.org/10.7326/0003-4819-150-8-200904210-00017 Full text not available from this repository.

Pach, A; Warren, M; Chang, I; Im, J; Nichols, C; Meyer, CG; Pak, GD; Panzner, U; Park, SE; von Kalckreuth, V; +6 more... Baker, S; Rabezanahary, H; Rakotondrainiarivelo, JP; Raminosoa, TM; Rakotozandrindrainy, R; Marks, F; (2016) A Qualitative Study Investigating Experiences, Perceptions, and Healthcare System Performance in Relation to the Surveillance of Typhoid Fever in Madagascar. Clinical infectious diseases, 62 Sup. S69-75. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/civ892 Full text not available from this repository.

Parry, CM; Thieu, NT; Dolecek, C; Karkey, A; Gupta, R; Turner, P; Dance, D; Maude, RR; Ha, V; Tran, CN; +25 more... Thi, PL; Be, BP; Phi, LT; Ngoc, RN; Ghose, A; Dongol, S; Campbell, JI; Thanh, DP; Thanh, TH; Moore, CE; Sona, S; Gaind, R; Deb, M; Anh, HV; Van, SN; Tinh, HT; Day, NP; Dondorp, A; Thwaites, G; Faiz, MA; Phetsouvanh, R; Newton, P; Basnyat, B; Farrar, JJ; Baker, S; (2015) Erratum for Parry et al., Clinically and Microbiologically Derived Azithromycin Susceptibility Breakpoints for Salmonella enterica Serovars Typhi and Paratyphi A. Antimicrobial agents and chemotherapy, 59 (7). p. 4364. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.01014-15 Full text not available from this repository.

Parry, CM; Thuy, CT; Dongol, S; Karkey, A; Vinh, H; Chinh, NT; Duy, PT; Thieu Nga, TV; Campbell, JI; Van Minh Hoang, N; +15 more... Arjyal, A; Bhutta, ZA; Bhattacharya, SK; Agtini, MD; Dong, B; Canh, doG; Naheed, A; Wain, J; Tinh Hien, T; Basnyat, B; Ochiai, L; Clemens, J; Farrar, JJ; Dolecek, C; Baker, S; (2010) Suitable disk antimicrobial susceptibility breakpoints defining Salmonella enterica serovar Typhi isolates with reduced susceptibility to fluoroquinolones. Antimicrobial agents and chemotherapy, 54 (12). pp. 5201-8. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.00963-10 Full text not available from this repository.

Pham Thanh, D; Thanh Tuyen, H; Nguyen Thi Nguyen, T; Chung The, H; Wick, RR; Thwaites, GE; Baker, S; Holt, KE; (2016) Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate. The Journal of antimicrobial chemotherapy. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkw173 Full text not available from this repository.

Seth-Smith, HM; Harris, SR; Skilton, RJ; Radebe, FM; Golparian, D; Shipitsyna, E; Duy, PT; Scott, P; Cutcliffe, LT; O'Neill, C; +11 more... Parmar, S; Pitt, R; Baker, S; Ison, CA; Marsh, P; Jalal, H; Lewis, DA; Unemo, M; Clarke, IN; Parkhill, J; Thomson, NR; (2013) Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture. Genome research, 23 (5). pp. 855-66. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.150037.112 Full text not available from this repository.

The, HC; Thanh, DP; Holt, KE; Thomson, NR; Baker, S; (2016) The genomic signatures of Shigella evolution, adaptation and geographical spread. Nature reviews Microbiology, 14 (4). pp. 235-50. ISSN 1740-1526 DOI: https://doi.org/10.1038/nrmicro.2016.10 Full text not available from this repository.

Van Dung, N; Anh, PH; Van Cuong, N; Hoa, NT; Carrique-Mas, J; Hien, VB; Sharp, C; Rabaa, M; Berto, A; Campbell, J; +5 more... Baker, S; Farrar, J; Woolhouse, ME; Bryant, JE; Simmonds, P; (2015) Large-scale screening and characterization of enteroviruses and kobuviruses infecting pigs in Vietnam. The Journal of general virology, 97 (2). pp. 378-88. ISSN 0022-1317 DOI: https://doi.org/10.1099/jgv.0.000366 Full text not available from this repository.

Wong, VK; Baker, S; Pickard, DJ; Parkhill, J; Page, AJ; Feasey, NA; Kingsley, RA; Thomson, NR; Keane, JA; Weill, FX; +64 more... Edwards, DJ; Hawkey, J; Harris, SR; Mather, AE; Cain, AK; Hadfield, J; Hart, PJ; Thieu, NT; Klemm, EJ; Glinos, DA; Breiman, RF; Watson, CH; Kariuki, S; Gordon, MA; Heyderman, RS; Okoro, C; Jacobs, J; Lunguya, O; Edmunds, WJ; Msefula, C; Chabalgoity, JA; Kama, M; Jenkins, K; Dutta, S; Marks, F; Campos, J; Thompson, C; Obaro, S; MacLennan, CA; Dolecek, C; Keddy, KH; Smith, AM; Parry, CM; Karkey, A; Mulholland, EK; Campbell, JI; Dongol, S; Basnyat, B; Dufour, M; Bandaranayake, D; Naseri, TT; Singh, SP; Hatta, M; Newton, P; Onsare, RS; Isaia, L; Dance, D; Davong, V; Thwaites, G; Wijedoru, L; Crump, JA; De Pinna, E; Nair, S; Nilles, EJ; Thanh, DP; Turner, P; Soeng, S; Valcanis, M; Powling, J; Dimovski, K; Hogg, G; Farrar, J; Holt, KE; Dougan, G; (2015) Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. Nature genetics, 47 (6). pp. 632-9. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3281 Full text not available from this repository.

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Anders, KL; Thompson, CN; Thuy, NT; Nguyet, NM; Tu, LT; Dung, TT; Phat, VV; Van, NT; Hieu, NT; Tham, NT; +5 more... Ha, PT; Lien, LB; Chau, NV; Baker, S; Simmons, CP; (2015) The epidemiology and aetiology of diarrhoeal disease in infancy in southern Vietnam: a birth cohort study. International journal of infectious diseases. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2015.03.013
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Andrews, JR; Prajapati, KG; Eypper, E; Shrestha, P; Shakya, M; Pathak, KR; Joshi, N; Tiwari, P; Risal, M; Koirala, S; +11 more... Karkey, A; Dongol, S; Wen, S; Smith, AB; Maru, D; Basnyat, B; Baker, S; Farrar, J; Ryan, ET; Hohmann, E; Arjyal, A; (2013) Evaluation of an Electricity-free, Culture-based Approach for Detecting Typhoidal Salmonella Bacteremia during Enteric Fever in a High Burden, Resource-limited Setting. PLoS neglected tropical diseases, 7 (6). ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0002292
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Arjyal, A; Basnyat, B; Nhan, HT; Koirala, S; Giri, A; Joshi, N; Shakya, M; Pathak, KR; Mahat, SP; Prajapati, SP; +18 more... Adhikari, N; Thapa, R; Merson, L; Gajurel, D; Lamsal, K; Lamsal, D; Yadav, BK; Shah, G; Shrestha, P; Dongol, S; Karkey, A; Thompson, CN; Thieu, NT; Thanh, DP; Baker, S; Thwaites, GE; Wolbers, M; Dolecek, C; (2016) Gatifloxacin versus ceftriaxone for uncomplicated enteric fever in Nepal: an open-label, two-centre, randomised controlled trial. The Lancet infectious diseases. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(15)00530-7
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Baker, S; Hanage, WP; Holt, KE; (2010) Navigating the future of bacterial molecular epidemiology. Current opinion in microbiology, 13 (5). pp. 640-5. ISSN 1369-5274 DOI: https://doi.org/10.1016/j.mib.2010.08.002
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Baker, S; Holt, KE; Clements, AC; Karkey, A; Arjyal, A; Boni, MF; Dongol, S; Hammond, N; Koirala, S; Duy, PT; +6 more... Nga, TV; Campbell, JI; Dolecek, C; Basnyat, B; Dougan, G; Farrar, JJ; (2011) Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission. Open biology, 1 (2). p. 110008. ISSN 2046-2441 DOI: https://doi.org/10.1098/rsob.110008
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Baker, S; Hombach, J; Marks, F; (2016) What Have We Learned From the Typhoid Fever Surveillance in Africa Program? Clinical infectious diseases, 62 Sup. S1-3. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/civ675
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Baker, S; Karkey, A; Parry, C; (2014) Are we adequately prepared for the emergence of Salmonella enterica serovar Paratyphi A? The Lancet Global health, 2 (4). e195-6. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(14)70009-9
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Berto, A; Day, J; Van Vinh Chau, N; Thwaites, GE; My, NN; Baker, S; Darton, TC; (2017) Current challenges and possible solutions to improve access to care and treatment for hepatitis C infection in Vietnam: a systematic review. BMC infectious diseases, 17 (1). p. 260. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2360-6
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Carrique-Mas, JJ; Tue, NT; Bryant, JE; Saylors, K; Cuong, NV; Hoa, NT; An, NN; Hien, VB; Lao, PV; Tu, NC; +13 more... Chuyen, NK; Chuc, NT; Tan, DV; Duong, HV; Toan, TK; Chi, NT; Campbell, J; Rabaa, MA; Nadjm, B; Woolhouse, M; Wertheim, H; Thwaites, G; Baker, S; (2015) The baseline characteristics and interim analyses of the high-risk sentinel cohort of the Vietnam Initiative on Zoonotic InfectiONS (VIZIONS). Scientific reports, 5. p. 17965. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep17965
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Chung The, H; Karkey, A; Pham Thanh, D; Boinett, CJ; Cain, AK; Ellington, M; Baker, KS; Dongol, S; Thompson, C; Harris, SR; +11 more... Jombart, T; Le Thi Phuong, T; Tran Do Hoang, N; Ha Thanh, T; Shretha, S; Joshi, S; Basnyat, B; Thwaites, G; Thomson, NR; Rabaa, MA; Baker, S; (2015) A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae. EMBO molecular medicine, 7 (3). pp. 227-39. ISSN 1757-4676 DOI: https://doi.org/10.15252/emmm.201404767
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Chung The, H; Rabaa, MA; Thanh, DP; Ruekit, S; Wangchuk, S; Dorji, T; Tshering, KP; Nguyen, TN; Vinh, PV; Thanh, TH; +9 more... Minh, CN; Turner, P; Sar, P; Thwaites, G; Holt, KE; Thomson, NR; Bodhidatta, L; Jeffries Mason, C; Baker, S; (2015) Introduction and establishment of fluoroquinolone-resistant Shigella sonnei into Bhutan. Microbial genomics, 1 (6). e000042. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000042
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Cotten, M; Petrova, V; Phan, MV; Rabaa, MA; Watson, SJ; Ong, SH; Kellam, P; Baker, S; (2014) Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting. Journal of virology. ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.01333-14
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Dongol, S; Thompson, CN; Clare, S; Nga, TV; Duy, PT; Karkey, A; Arjyal, A; Koirala, S; Khatri, NS; Maskey, P; +8 more... Poudel, S; Jaiswal, VK; Vaidya, S; Dougan, G; Farrar, JJ; Dolecek, C; Basnyat, B; Baker, S; (2012) The microbiological and clinical characteristics of invasive salmonella in gallbladders from cholecystectomy patients in kathmandu, Nepal. PloS one, 7 (10). e47342. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0047342
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Dung, TTN; Duy, PT; Sessions, OM; Sangumathi, UK; Phat, VV; Tam, PTT; To, NTN; Phuc, TM; Hong Chau, TT; Chau, NNM; +4 more... Minh, NN; Thwaites, GE; Rabaa, MA; Baker, S; (2017) A universal genome sequencing method for rotavirus A from human fecal samples which identifies segment reassortment and multi-genotype mixed infection. BMC genomics, 18 (1). p. 324. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-3714-6
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Duong, VT; Vinh Phat, V; Thanh Tuyen, H; Dung, TT; Trung, PD; Minh, PV; Thi Phuong Tu, L; Campbell, JI; Phuc, HL; Ha, TT; +15 more... Ngoc, NM; Huong, NT; Thi Thanh Tam, P; Huong, DT; Xang, NV; Dong, N; Phuong, LT; Hung, NV; Phu, BD; Phuc, TM; Thwaites, GE; Vi, LL; Rabaa, MA; Thompson, CN; Baker, S; (2016) An evaluation of the Luminex xTAG Gastrointestinal Pathogen Panel assay for the detection of multiple diarrheal pathogens in fecal samples in Vietnam. Journal of clinical microbiology. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.03321-15
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Dyson, ZA; Thanh, DP; Bodhidatta, L; Mason, CJ; Srijan, A; Rabaa, MA; Vinh, PV; Thanh, TH; Thwaites, GE; Baker, S; +1 more... Holt, KE; (2017) Whole Genome Sequence Analysis of Salmonella Typhi Isolated in Thailand before and after the Introduction of a National Immunization Program. PLoS neglected tropical diseases, 11 (1). e0005274. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005274
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Harrison, JW; Dung, TT; Siddiqui, F; Korbrisate, S; Bukhari, H; Tra, MP; Hoang, NV; Carrique-Mas, J; Bryant, J; Campbell, JI; +5 more... Studholme, DJ; Wren, BW; Baker, S; Titball, RW; Champion, OL; (2014) Identification of Possible Virulence Marker from Campylobacter jejuni Isolates. Emerging infectious diseases, 20 (6). pp. 1026-9. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2006.130635
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Ho, NT; Thompson, C; Nhan, LNT; Van, HMT; Dung, NT; Tran My, P; Quang, VM; Minh, NNQ; Tuan, TA; Hung, NT; +6 more... Tuan, HM; Vinh Chau, NV; Wolbers, M; Thwaites, GE; Choisy, M; Baker, S; (2018) Retrospective analysis assessing the spatial and temporal distribution of paediatric acute respiratory tract infections in Ho Chi Minh City, Vietnam. BMJ open, 8 (1). e016349. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2017-016349
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Holt, KE; Baker, S; Weill, FX; Holmes, EC; Kitchen, A; Yu, J; Sangal, V; Brown, DJ; Coia, JE; Kim, DW; +8 more... Choi, SY; Kim, SH; da Silveira, WD; Pickard, DJ; Farrar, JJ; Parkhill, J; Dougan, G; Thomson, NR; (2012) Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. Nature genetics, 44 (9). pp. 1056-9. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.2369
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Hong Anh, P; Carrique-Mas, JJ; Van Cuong, N; Hoa, NT; Lam Anh, N; Duy, DT; Hien, VB; Vu Tra My, P; Rabaa, MA; Farrar, J; +2 more... Baker, S; Bryant, JE; (2014) The prevalence and genetic diversity of group A rotaviruses on pig farms in the Mekong Delta region of Vietnam. Veterinary microbiology. ISSN 0378-1135 DOI: https://doi.org/10.1016/j.vetmic.2014.02.030
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International Typhoid Consortium; Wong, VK; Holt, KE; Okoro, C; Baker, S; Pickard, DJ; Marks, F; Page, AJ; Olanipekun, G; Munir, H; +23 more... Alter, R; Fey, PD; Feasey, NA; Weill, FX; Le Hello, S; Hart, PJ; Kariuki, S; Breiman, RF; Gordon, MA; Heyderman, RS; Jacobs, J; Lunguya, O; Msefula, C; MacLennan, CA; Keddy, KH; Smith, AM; Onsare, RS; De Pinna, E; Nair, S; Amos, B; Dougan, G; Obaro, S; Watson, C; (2016) Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa. PLoS neglected tropical diseases, 10 (9). e0004781. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004781
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Karkey, A; Thompson, CN; Tran Vu Thieu, N; Dongol, S; Le Thi Phuong, T; Voong Vinh, P; Arjyal, A; Martin, LB; Rondini, S; Farrar, JJ; +3 more... Dolecek, C; Basnyat, B; Baker, S; (2013) Differential epidemiology of Salmonella Typhi and Paratyphi A in Kathmandu, Nepal: a matched case control investigation in a highly endemic enteric fever setting. PLoS neglected tropical diseases, 7 (8). e2391. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0002391
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Khauv, P; Turner, P; Soeng, C; Soeng, S; Moore, CE; Bousfield, R; Stoesser, N; Emary, K; Thanh, DP; Baker, S; +4 more... Hang, VT; van Doorn, HR; Day, NP; Parry, CM; (2014) Ophthalmic infections in children presenting to Angkor Hospital for Children, Siem Reap, Cambodia. BMC research notes, 7. p. 784. ISSN 1756-0500 DOI: https://doi.org/10.1186/1756-0500-7-784
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Klemm, EJ; Shakoor, S; Page, AJ; Qamar, FN; Judge, K; Saeed, DK; Wong, VK; Dallman, TJ; Nair, S; Baker, S; +7 more... Shaheen, G; Qureshi, S; Yousafzai, MT; Saleem, MK; Hasan, Z; Dougan, G; Hasan, R; (2018) Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to Fluoroquinolones and Third-Generation Cephalosporins. mBio, 9 (1). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.00105-18
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Kolader, ME; Vinh, H; Ngoc Tuyet, PT; Thompson, C; Wolbers, M; Merson, L; Campbell, JI; Ngoc Dung, TT; Manh Tuan, H; Vinh Chau, NV; +3 more... Farrar, J; van Doorn, HR; Baker, S; (2013) An oral preparation of Lactobacillus acidophilus for the treatment of uncomplicated acute watery diarrhoea in Vietnamese children: study protocol for a multicentre, randomised, placebo-controlled trial. Trials, 14. p. 27. ISSN 1745-6215 DOI: https://doi.org/10.1186/1745-6215-14-27
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Lan, NP; Nga, TV; Yen, NT; Dung, leT; Tuyen, HT; Campbell, JI; Whitehorn, J; Thwaites, G; Chau, NV; Baker, S; (2014) Two cases of non-toxigenic Vibrio cholerae non-O1, non-O139 bacteremia in Ho Chi Minh City. Journal of clinical microbiology, 52 (10). pp. 3819-21. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01915-14
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Le, V; Nhu, NT; Cerdeno-Tarraga, A; Campbell, JI; Tuyen, HT; Nhu, TdoH; Tam, PT; Schultsz, C; Thwaites, G; Thomson, NR; +1 more... Baker, S; (2015) Genetic characterization of three qnrS1-harbouring multidrug-resistance plasmids and qnrS1-containing transposons circulating in Ho Chi Minh City, Vietnam. Journal of medical microbiology, 64 (8). pp. 869-78. ISSN 0022-2615 DOI: https://doi.org/10.1099/jmm.0.000100
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Leung, JM; Hong, CT; Trung, NH; Thi, HN; Minh, CN; Thi, TV; Hong, DT; Man, DN; Knowles, SC; Wolbers, M; +4 more... Hoang, NleT; Thwaites, G; Graham, AL; Baker, S; (2016) The impact of albendazole treatment on the incidence of viral- and bacterial-induced diarrhea in school children in southern Vietnam: study protocol for a randomized controlled trial. Trials, 17 (1). p. 279. ISSN 1745-6215 DOI: https://doi.org/10.1186/s13063-016-1406-1
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Lu, L; Van Dung, N; Bryant, JE; Carrique-Mas, J; Van Cuong, N; Anh, PH; Rabaa, MA; Baker, S; Simmonds, P; Woolhouse, ME; (2016) Evolution and phylogeographic dissemination of endemic porcine picornaviruses in Vietnam. Virus evolution, 2 (1). vew001. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vew001
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Makendi, C; Page, AJ; Wren, BW; Le Thi Phuong, T; Clare, S; Hale, C; Goulding, D; Klemm, EJ; Pickard, D; Okoro, C; +10 more... Hunt, M; Thompson, CN; Phu Huong Lan, N; Tran Do Hoang, N; Thwaites, GE; Le Hello, S; Brisabois, A; Weill, FX; Baker, S; Dougan, G; (2016) A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions. PLoS neglected tropical diseases, 10 (2). e0004446. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004446
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Moore, CE; Pan-Ngum, W; Wijedoru, LP; Sona, S; Nga, TV; Duy, PT; Vinh, PV; Chheng, K; Kumar, V; Emary, K; +5 more... Carter, M; White, L; Baker, S; Day, NP; Parry, CM; (2013) Evaluation of the Diagnostic Accuracy of a Typhoid IgM Flow Assay for the Diagnosis of Typhoid Fever in Cambodian Children Using a Bayesian Latent Class Model Assuming an Imperfect Gold Standard. The American journal of tropical medicine and hygiene. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.13-0384
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Nasstrom, E; Nga Tran Vu, T; Dongol, S; Karkey, A; Phat Voong, V; Tuyen Ha, T; Johansson, A; Amit, A; Thwaites, G; Dolecek, C; +3 more... Basnyat, B; Baker, S; Antti, H; (2014) Salmonella Typhi and Salmonella Paratyphi A elaborate distinct systemic metabolite signatures during enteric fever. eLife, 3. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.03100
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Parry, CM; Thieu, NT; Dolecek, C; Karkey, A; Gupta, R; Turner, P; Dance, D; Maude, RR; Ha, V; Tran, CN; +25 more... Thi, PL; Be, BP; Phi, LT; Ngoc, RN; Ghose, A; Dongol, S; Campbell, JI; Thanh, DP; Thanh, TH; Moore, CE; Sona, S; Gaind, R; Deb, M; Anh, HV; Van, SN; Tinh, HT; Day, NP; Dondorp, A; Thwaites, G; Faiz, MA; Phetsouvanh, R; Newton, P; Basnyat, B; Farrar, JJ; Baker, S; (2015) Clinically and microbiologically derived azithromycin susceptibility breakpoints for Salmonella enterica serovars Typhi and Paratyphi A. Antimicrobial agents and chemotherapy, 59 (5). pp. 2756-64. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.04729-14
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Parry, CM; Thompson, C; Ha, V; Nguyen Tran, C; le Thi, P; Vo Anh, H; Tran Tinh, H; Wain, J; Farrar, JJ; Baker, S; (2014) Risk factors for the development of severe typhoid fever in Vietnam. BMC infectious diseases, 14. p. 73. ISSN 1471-2334 DOI: https://doi.org/10.1186/1471-2334-14-73
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Parry, CM; Vinh, H; Chinh, NT; Wain, J; Campbell, JI; Hien, TT; Farrar, JJ; Baker, S; (2011) The influence of reduced susceptibility to fluoroquinolones in Salmonella enterica serovar Typhi on the clinical response to ofloxacin therapy. PLoS neglected tropical diseases, 5 (6). e1163. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0001163
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Pham Thanh, D; Karkey, A; Dongol, S; Ho Thi, N; Thompson, CN; Rabaa, MA; Arjyal, A; Holt, KE; Wong, V; Tran Vu Thieu, N; +13 more... Voong Vinh, P; Ha Thanh, T; Pradhan, A; Shrestha, SK; Gajurel, D; Pickard, D; Parry, CM; Dougan, G; Wolbers, M; Dolecek, C; Thwaites, GE; Basnyat, B; Baker, S; (2016) A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure. eLife, 5. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.14003
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Pham Thanh, D; Thompson, CN; Rabaa, MA; Sona, S; Sopheary, S; Kumar, V; Moore, C; Tran Vu Thieu, N; Wijedoru, L; Holt, KE; +8 more... Wong, V; Pickard, D; Thwaites, GE; Day, N; Dougan, G; Turner, P; Parry, CM; Baker, S; (2016) The Molecular and Spatial Epidemiology of Typhoid Fever in Rural Cambodia. PLoS neglected tropical diseases, 10 (6). e0004785. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004785
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Pham Thanh, D; Tran Vu Thieu, N; Tran Thuy, C; Lodén, M; Tuin, K; Campbell, JI; Van Minh Hoang, N; Voong Vinh, P; Farrar, JJ; Holt, KE; +2 more... Dougan, G; Baker, S; (2013) Identification of Salmonella enterica Serovar Typhi Genotypes by Use of Rapid Multiplex Ligation-Dependent Probe Amplification. Journal of clinical microbiology, 51 (9). pp. 2950-8. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01010-13
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Phan Vu Tra, My; Ha Minh, Lam; Thompson, CorinneN; Hoang le, Phuc; Pham Thi Ngoc, Tuyet; Ha, Vinh; Nguyen van Minh, Hoang; Phamvan, Minh; Nguyen Thanh, Vinh; Cao Thu, Thuy; +10 more... Tran Thi Thu, Nga; Nguyen Thi Thu, Hau; Nguyen Tran, Chinh; Tang Chi, Thuong; Ha Manh, Tuan; Campbell, JamesI; Clements, ArchieCA; Farrar, Jeremy; Boni, MacIejF; Baker, Stephen; (2013) The dynamics of GII.4 Norovirus in Ho Chi Minh City, Vietnam. Infection, genetics and evolution, 18. pp. 335-343. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2013.04.014
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Phan, MVT; Anh, PH; Cuong, NV; Munnink, BBO; van der Hoek, L; My, PT; Tri, TN; Bryant, JE; Baker, S; Thwaites, G; +5 more... Woolhouse, M; Kellam, P; Rabaa, MA; Cotten, M; VIZIONS Consortium; (2016) Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection. Virus evolution, 2 (2). vew027. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vew027
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Phu Huong Lan, N; Le Thi Phuong, T; Nguyen Huu, H; Thuy, L; Mather, AE; Park, SE; Marks, F; Thwaites, GE; Van Vinh Chau, N; Thompson, CN; +1 more... Baker, S; (2016) Invasive Non-typhoidal Salmonella Infections in Asia: Clinical Observations, Disease Outcome and Dominant Serovars from an Infectious Disease Hospital in Vietnam. PLoS neglected tropical diseases, 10 (8). e0004857. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004857
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Phu, NH; Hoang Mai, NT; Nghia, HD; Chau, TT; Loc, PP; Thai, leH; Phuong, TM; Thai, CQ; Man, DN; Van Vinh Chau, N; +4 more... Nga, TV; Campbell, J; Baker, S; Whitehorn, J; (2013) Fatal consequences of freshwater pearl diving. Lancet, 381 (9861). p. 176. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(12)61730-9
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Pitzer, VE; Bowles, CC; Baker, S; Kang, G; Balaji, V; Farrar, JJ; Grenfell, BT; (2014) Predicting the impact of vaccination on the transmission dynamics of typhoid in South Asia: a mathematical modeling study. PLoS neglected tropical diseases, 8 (1). e2642. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0002642
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Rabaa, MA; Tue, NT; Phuc, TM; Carrique-Mas, J; Saylors, K; Cotten, M; Bryant, JE; Nghia, HD; Cuong, NV; Pham, HA; +26 more... Berto, A; Phat, VV; Dung, TT; Bao, LH; Hoa, NT; Wertheim, H; Nadjm, B; Monagin, C; van Doorn, HR; Rahman, M; Tra, MP; Campbell, JI; Boni, MF; Tam, PT; van der Hoek, L; Simmonds, P; Rambaut, A; Toan, TK; Van Vinh Chau, N; Hien, TT; Wolfe, N; Farrar, JJ; Thwaites, G; Kellam, P; Woolhouse, ME; Baker, S; (2015) The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases. EcoHealth. ISSN 1612-9202 DOI: https://doi.org/10.1007/s10393-015-1061-0
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Schreiber, F; Kay, S; Frankel, G; Clare, S; Goulding, D; van de Vosse, E; van Dissel, JT; Strugnell, R; Thwaites, G; Kingsley, RA; +2 more... Dougan, G; Baker, S; (2015) The Hd, Hj, and Hz66 flagella variants of Salmonella enterica serovar Typhi modify host responses and cellular interactions. Scientific reports, 5. p. 7947. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep07947
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Thi Khanh Nhu, N; Riordan, DW; Do Hoang Nhu, T; Thanh, DP; Thwaites, G; Huong Lan, NP; Wren, BW; Baker, S; Stabler, RA; (2016) The induction and identification of novel Colistin resistance mutations in Acinetobacter baumannii and their implications. Scientific reports, 6. p. 28291. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep28291
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Thi Ty Hang, V; Thi Han Ny, N; My Phuc, T; Thi Thanh Tam, P; Thao Huong, D; Dang Trung Nghia, H; Tran Anh Vu, N; Thi Hong Phuong, P; Van Xang, N; Dong, N; +9 more... Nhu Hiep, P; Van Hung, N; Tinh Hien, T; Rabaa, M; Thwaites, GE; Baker, S; Van Tan, L; van Doorn, HR; VIZIONS consortium; (2017) Evaluation of the Luminex xTAG Respiratory Viral Panel FAST v2 assay for detection of multiple respiratory viral pathogens in nasal and throat swabs in Vietnam. Wellcome open research, 2. p. 80. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.12429.1
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Thompson, CN; Anders, KL; le Thi Quynh, N; Ha Thanh, T; Pham Van, M; le Thi Phuong, T; Tran Do Hoang, N; Nguyen Thi Thanh, N; Tran Thi Thao, L; Vu Thuy, D; +8 more... Lu Lan, V; Nguyen Thi Van, T; Nguyen Trong, H; Nguyen Vinh Van, C; Campbell, JI; Thwaites, G; Simmons, C; Baker, S; (2014) A cohort study to define the age-specific incidence and risk factors of Shigella diarrhoeal infections in Vietnamese children: a study protocol. BMC public health, 14. p. 1289. ISSN 1471-2458 DOI: https://doi.org/10.1186/1471-2458-14-1289
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Thompson, CN; Blacksell, SD; Paris, DH; Arjyal, A; Karkey, A; Dongol, S; Giri, A; Dolecek, C; Day, N; Baker, S; +3 more... Thwaites, G; Farrar, J; Basnyat, B; (2015) Undifferentiated Febrile Illness in Kathmandu, Nepal. The American journal of tropical medicine and hygiene, 92 (4). pp. 875-8. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.14-0709
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Thompson, CN; Phan, MV; Hoang, NV; Minh, PV; Vinh, NT; Thuy, CT; Nga, TT; Rabaa, MA; Duy, PT; Dung, TT; +19 more... Phat, VV; Nga, TV; Tu, leTP; Tuyen, HT; Yoshihara, K; Jenkins, C; Duong, VT; Phuc, HL; Tuyet, PT; Ngoc, NM; Vinh, H; Chinh, NT; Thuong, TC; Tuan, HM; Hien, TT; Campbell, JI; Chau, NV; Thwaites, G; Baker, S; (2015) A Prospective Multi-Center Observational Study of Children Hospitalized with Diarrhea in Ho Chi Minh City, Vietnam. The American journal of tropical medicine and hygiene, 92 (5). pp. 1045-52. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.14-0655
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Thompson, CN; Phan, VT; Le, TP; Pham, TN; Hoang, LP; Ha, V; Nguyen, VM; Pham, VM; Nguyen, TV; Cao, TT; +9 more... Tran, TT; Nguyen, TT; Dao, MT; Campbell, JI; Nguyen, TC; Tang, CT; Ha, MT; Farrar, J; Baker, S; (2013) Epidemiological features and risk factors of Salmonella gastroenteritis in children resident in Ho Chi Minh City, Vietnam. Epidemiology and infection, 141 (8). pp. 1604-13. ISSN 0950-2688 DOI: https://doi.org/10.1017/S0950268812002014
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Thompson, CN; Thieu, NT; Vinh, PV; Duc, AN; Wolbers, M; Vinh, H; Campbell, JI; Ngoc, DT; Hoang, NV; Thanh, TH; +8 more... The, HC; Nguyen, TN; Lan, NP; Parry, CM; Chau, NV; Thwaites, G; Thanh, DP; Baker, S; (2015) Clinical implications of reduced susceptibility to fluoroquinolones in paediatric Shigella sonnei and Shigella flexneri infections. The Journal of antimicrobial chemotherapy. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkv400
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Thompson, CN; Tu, LT; Anders, KL; Hieu, NT; Vi, LL; Chau, NV; Duong, VT; Chau, NN; Chau, TT; Tuyen, HT; +11 more... Nga, TV; Van Minh, P; Nhu, TD; Nhi, LT; Saul, A; Martin, LB; Podda, A; Gerke, C; Thwaites, G; Simmons, CP; Baker, S; (2015) The transfer and decay of maternal antibody against Shigella sonnei in a longitudinal cohort of Vietnamese infants. Vaccine. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2015.12.047
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Thompson, CN; Zelner, JL; Nhu, TD; Phan, MV; Hoang Le, P; Nguyen Thanh, H; Vu Thuy, D; Minh Nguyen, N; Ha Manh, T; Van Hoang Minh, T; +8 more... Lu Lan, V; Nguyen Van Vinh, C; Tran Tinh, H; von Clemm, E; Storch, H; Thwaites, G; Grenfell, BT; Baker, S; (2015) The impact of environmental and climatic variation on the spatiotemporal trends of hospitalized pediatric diarrhea in Ho Chi Minh City, Vietnam. Health & place, 35. pp. 147-154. ISSN 1353-8292 DOI: https://doi.org/10.1016/j.healthplace.2015.08.001
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Tu, LTP; Hoang, NVM; Cuong, NV; Campbell, J; Bryant, JE; Hoa, NT; Kiet, BT; Thompson, C; Duy, DT; Phat, VV; +4 more... Hien, VB; Thwaites, G; Baker, S; Carrique-Mas, JJ; (2015) High levels of contamination and antimicrobial-resistant non-typhoidal Salmonella serovars on pig and poultry farms in the Mekong Delta of Vietnam. Epidemiology and infection, 143 (14). pp. 3074-3086. ISSN 0950-2688 DOI: https://doi.org/10.1017/S0950268815000102
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Van Nguyen, D; Van Nguyen, C; Bonsall, D; Ngo, TT; Carrique-Mas, J; Pham, AH; Bryant, JE; Thwaites, G; Baker, S; Woolhouse, M; +1 more... Simmonds, P; (2018) Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam. Viruses, 10 (3). ISSN 1999-4915 DOI: https://doi.org/10.3390/v10030102
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Van Vinh Chau, N; Buu Chau, L; Desquesnes, M; Herder, S; Phu Huong Lan, N; Campbell, JI; Van Cuong, N; Yimming, B; Chalermwong, P; Jittapalapong, S; +16 more... Ramon Franco, J; Tri Tue, N; Rabaa, MA; Carrique-Mas, J; Pham Thi Thanh, T; Tran Vu Thieu, N; Berto, A; Thi Hoa, N; Van Minh Hoang, N; Canh Tu, N; Khac Chuyen, N; Wills, B; Tinh Hien, T; Thwaites, GE; Yacoub, S; Baker, S; (2016) A Clinical and Epidemiological Investigation of the First Reported Human Infection With the Zoonotic Parasite Trypanosoma evansi in Southeast Asia. Clinical infectious diseases. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciw052
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This list was generated on Mon Dec 9 06:42:26 2019 GMT.