Tosas Auguet, O; Stabler, RA; Betley, J; Preston, MD; Dhaliwal, M; Gaunt, M; Ioannou, A; Desai, N; Karadag, T; Batra, R; +4 more... Otter, JA; Marbach, H; Clark, TG; Edgeworth, JD; (2017) Frequent undetected MRSA ward-based transmission linked to patient sharing between hospitals. Clinical infectious diseases. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix901

Assefa, S; Lim, C; Preston, MD; Duffy, CW; Nair, MB; Adroub, SA; Kadir, KA; Goldberg, JM; Neafsey, DE; Divis, P; +5 more... Clark, TG; Duraisingh, MT; Conway, DJ; Pain, A; Singh, B; (2015) Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi. Proceedings of the National Academy of Sciences of the United States of America, 112 (42). pp. 13027-32. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1509534112

Cairns, MD; Preston, MD; Lawley, TD; Clark, TG; Stabler, RA; Wren, BW; (2015) Genomic epidemiology of a protracted hospital outbreak caused by a toxin A negative, Clostridium difficile sublineage PCR Ribotype 017 strain in London, England. Journal of clinical microbiology, 53 (10). pp. 3141-7. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.00648-15

Coll, F; McNerney, R; Preston, MD; Guerra-Assunção, JA; Warry, A; Hill-Cawthorne, G; Mallard, K; Nair, M; Miranda, A; Alves, A; +9 more... Perdigão, J; Viveiros, M; Portugal, I; Hasan, Z; Hasan, R; Glynn, JR; Martin, N; Pain, A; Clark, TG; (2015) Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences. Genome medicine, 7 (1). p. 51. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-015-0164-0

Roberts, CH; Franklin, CS; Makalo, P; Joof, H; Sarr, I; Mahdi, OS; Sillah, A; Bah, M; Payne, F; Jeffreys, AE; +13 more... Bottomley, W; Natividad, A; Molina-Gonzalez, S; Burr, SE; Preston, M; Kwiatkowski, D; Rockett, KA; Clark, TG; Burton, MJ; Mabey, DC; Bailey, R; Barroso, I; Holland, MJ; (2015) Conjunctival fibrosis and the innate barriers to Chlamydia trachomatis intracellular infection: a genome wide association study. Scientific reports, 5. p. 17447. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep17447

Samad, H; Coll, F; Preston, MD; Ocholla, H; Fairhurst, RM; Clark, TG; (2015) Imputation-Based Population Genetics Analysis of Plasmodium falciparum Malaria Parasites. PLoS genetics, 11 (4). e1005131. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1005131

Assefa, SA; Preston, MD; Campino, S; Ocholla, H; Sutherland, CJ; Clark, TG; (2014) estMOI: Estimating multiplicity of infection using parasite deep sequencing data. Bioinformatics (Oxford, England), 30 (9). pp. 1292-4. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/btu005

Coll, F; Preston, M; Guerra-Assunção, JA; Hill-Cawthorn, G; Harris, D; Perdigão, J; Viveiros, M; Portugal, I; Drobniewski, F; Gagneux, S; +6 more... Glynn, JR; Pain, A; Parkhill, J; McNerney, R; Martin, N; Clark, TG; (2014) PolyTB: A genomic variation map for Mycobacterium tuberculosis. Tuberculosis (Edinburgh, Scotland), 94 (3). pp. 346-54. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2014.02.005

Naeem, R; Hidayah, L; Preston, MD; Clark, TG; Pain, A; (2014) SVAMP: sequence variation analysis, maps and phylogeny. Bioinformatics (Oxford, England), 30 (15). pp. 2227-9. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/btu176

Ocholla, H; Preston, MD; Mipando, M; Jensen, AT; Campino, S; MacInnis, B; Alcock, D; Terlouw, A; Zongo, I; Oudraogo, JB; +13 more... Djimde, AA; Assefa, S; Doumbo, OK; Borrmann, S; Nzila, A; Marsh, K; Fairhurst, RM; Nosten, F; Anderson, TJ; Kwiatkowski, DP; Craig, A; Clark, TG; Montgomery, J; (2014) Whole-genome scans provide evidence of adaptive evolution in Malawian Plasmodium falciparum isolates. The Journal of infectious diseases, 210 (12). pp. 1991-2000. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiu349

Preston, MD; Campino, S; Assefa, SA; Echeverry, DF; Ocholla, H; Amambua-Ngwa, A; Stewart, LB; Conway, DJ; Borrmann, S; Michon, P; +12 more... Zongo, I; Ouédraogo, JB; Djimde, AA; Doumbo, OK; Nosten, F; Pain, A; Bousema, T; Drakeley, CJ; Fairhurst, RM; Sutherland, CJ; Roper, C; Clark, TG; (2014) A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains. Nature communications, 5. p. 4052. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms5052

Clark, TG; Mallard, K; Coll, F; Preston, M; Assefa, S; Harris, D; Ogwang, S; Mumbowa, F; Kirenga, B; O'Sullivan, DM; +8 more... Okwera, A; Eisenach, KD; Joloba, M; Bentley, SD; Ellner, JJ; Parkhill, J; Jones-López, EC; McNerney, R; (2013) Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing. PloS one, 8 (12). e83012. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0083012

Preston, MD; Dudbridge, F; (2013) Utilising family-based designs for detecting rare variant disease associations. Annals of human genetics, 78 (2). pp. 129-40. ISSN 0003-4800 DOI: https://doi.org/10.1111/ahg.12051

Coll, F; Mallard, K; Preston, MD; Bentley, S; Parkhill, J; McNerney, R; Martin, N; Clark, TG; (2012) SpolPred: Rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences. Bioinformatics (Oxford, England), 28 (22). pp. 2991-3. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/bts544