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Duffy, CW; Ba, H; Assefa, S; Ahouidi, AD; Deh, YB; Tandia, A; Kirsebom, FC; Kwiatkowski, DP; Conway, DJ; (2017) Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution. Molecular ecology. ISSN 0962-1083 DOI: https://doi.org/10.1111/mec.14066

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Campino, S; Benavente, ED; Assefa, S; Thompson, E; Drought, LG; Taylor, CJ; Gorvett, Z; Carret, CK; Flueck, C; Ivens, AC; +4 more... Kwiatkowski, DP; Alano, P; Baker, DA; Clark, TG; (2016) Genomic variation in two gametocyte non-producing Plasmodium falciparum clonal lines. Malaria journal, 15 (1). p. 229. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1254-1

Murray, L; Mobegi, VA; Duffy, CW; Assefa, SA; Kwiatkowski, DP; Laman, E; Loua, KM; Conway, DJ; (2016) Microsatellite genotyping and genome-wide single nucleotide polymorphism-based indices of Plasmodium falciparum diversity within clinical infections. Malaria journal, 15 (1). p. 275. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1324-4

Assefa, S; Lim, C; Preston, MD; Duffy, CW; Nair, MB; Adroub, SA; Kadir, KA; Goldberg, JM; Neafsey, DE; Divis, P; +5 more... Clark, TG; Duraisingh, MT; Conway, DJ; Pain, A; Singh, B; (2015) Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi. Proceedings of the National Academy of Sciences of the United States of America, 112 (42). pp. 13027-32. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1509534112

Divis, PC; Singh, B; Anderios, F; Hisam, S; Matusop, A; Kocken, CH; Assefa, SA; Duffy, CW; Conway, DJ; (2015) Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species. PLoS pathogens, 11 (5). e1004888. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1004888

Duffy, CW; Assefa, SA; Abugri, J; Amoako, N; Owusu-Agyei, S; Anyorigiya, T; MacInnis, B; Kwiatkowski, DP; Conway, DJ; Awandare, GA; (2015) Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity. BMC genomics, 16. p. 527. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-015-1746-3

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Ocholla, H; Preston, MD; Mipando, M; Jensen, AT; Campino, S; MacInnis, B; Alcock, D; Terlouw, A; Zongo, I; Oudraogo, JB; +13 more... Djimde, AA; Assefa, S; Doumbo, OK; Borrmann, S; Nzila, A; Marsh, K; Fairhurst, RM; Nosten, F; Anderson, TJ; Kwiatkowski, DP; Craig, A; Clark, TG; Montgomery, J; (2014) Whole-genome scans provide evidence of adaptive evolution in Malawian Plasmodium falciparum isolates. The Journal of infectious diseases, 210 (12). pp. 1991-2000. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiu349

Preston, MD; Campino, S; Assefa, SA; Echeverry, DF; Ocholla, H; Amambua-Ngwa, A; Stewart, LB; Conway, DJ; Borrmann, S; Michon, P; +12 more... Zongo, I; Ouédraogo, JB; Djimde, AA; Doumbo, OK; Nosten, F; Pain, A; Bousema, T; Drakeley, CJ; Fairhurst, RM; Sutherland, CJ; Roper, C; Clark, TG; (2014) A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains. Nature communications, 5. p. 4052. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms5052

Clark, TG; Mallard, K; Coll, F; Preston, M; Assefa, S; Harris, D; Ogwang, S; Mumbowa, F; Kirenga, B; O'Sullivan, DM; +8 more... Okwera, A; Eisenach, KD; Joloba, M; Bentley, SD; Ellner, JJ; Parkhill, J; Jones-López, EC; McNerney, R; (2013) Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing. PloS one, 8 (12). e83012. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0083012