AlShaikhahmed, K; Leonov, G; Sung, PY; Bingham, RJ; Twarock, R; Roy, P; (2018) Dynamic network approach for the modelling of genomic sub-complexes in multi-segmented viruses. Nucleic acids research. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gky881

Horesh, G; Harms, A; Fino, C; Parts, L; Gerdes, K; Heinz, E; Thomson, NR; (2018) SLING: a tool to search for linked genes in bacterial datasets. Nucleic acids research. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gky738

Sawyer, EB; Grabowska, AD; Cortes, T; (2018) Translational regulation in mycobacteria and its implications for pathogenicity. Nucleic acids research. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gky574

Ribeiro, AJM; Holliday, GL; Furnham, N; Tyzack, JD; Ferris, K; Thornton, JM; (2017) Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites. Nucleic acids research. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkx1012

Hamilton, WL; Claessens, A; Otto, TD; Kekre, M; Fairhurst, RM; Rayner, JC; Kwiatkowski, D; (2016) Extreme mutation bias and high AT content in Plasmodium falciparum. Nucleic acids research. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkw1259

Maishman, L; Obado, SO; Alsford, S; Bart, JM; Chen, WM; Ratushny, AV; Navarro, M; Horn, D; Aitchison, JD; Chait, BT; +2 more... Rout, MP; Field, MC; (2016) Co-dependence between trypanosome nuclear lamina components in nuclear stability and control of gene expression. Nucleic acids research. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkw751

Sillitoe, I; Furnham, N; (2015) FunTree: advances in a resource for exploring and contextualising protein function evolution. Nucleic acids research, 44 (D1). D317-23. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkv1274

Bellos, E; Kumar, V; Lin, C; Maggi, J; Phua, ZY; Cheng, CY; Cheung, CM; Hibberd, ML; Wong, TY; Coin, LJ; +1 more... Davila, S; (2014) cnvCapSeq: detecting copy number variation in long-range targeted resequencing data. Nucleic acids research. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gku849

Kahramanoglou, C; Cortes, T; Matange, N; Hunt, DM; Visweswariah, SS; Young, DB; Buxton, RS; (2014) Genomic mapping of cAMP receptor protein (CRPMt) in Mycobacterium tuberculosis: relation to transcriptional start sites and the role of CRPMt as a transcription factor. Nucleic acids research. gku548. ISSN 0305-1048 https://researchonline.lshtm.ac.uk/id/eprint/2374002 Full text not available from this repository.

Shameer, S; Logan-Klumpler, FJ; Vinson, F; Cottret, L; Merlet, B; Achcar, F; Boshart, M; Berriman, M; Breitling, R; Bringaud, F; +31 more... Bütikofer, P; Cattanach, AM; Bannerman-Chukualim, B; Creek, DJ; Crouch, K; de Koning, HP; Denise, H; Ebikeme, C; Fairlamb, AH; Ferguson, MA; Ginger, ML; Hertz-Fowler, C; Kerkhoven, EJ; Mäser, P; Michels, PA; Nayak, A; Nes, DW; Nolan, DP; Olsen, C; Silva-Franco, F; Smith, TK; Taylor, MC; Tielens, AG; Urbaniak, MD; van Hellemond, JJ; Vincent, IM; Wilkinson, SR; Wyllie, S; Opperdoes, FR; Barrett, MP; Jourdan, F; (2014) TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. Nucleic acids research. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gku944

Sillitoe, I; Lewis, TE; Cuff, A; Das, S; Ashford, P; Dawson, NL; Furnham, N; Laskowski, RA; Lee, D; Lees, JG; +4 more... Lehtinen, S; Studer, RA; Thornton, J; Orengo, CA; (2014) CATH: comprehensive structural and functional annotations for genome sequences. Nucleic acids research. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gku947

Sung, PY; Roy, P; (2014) Sequential packaging of RNA genomic segments during the assembly of Bluetongue virus. Nucleic acids research, 42 (22). pp. 13824-38. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gku1171

Furnham, N; Holliday, GL; de Beer, TA; Jacobsen, JO; Pearson, WR; Thornton, JM; (2013) The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes. Nucleic acids research, 42 (Databa). D485-9. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkt1243

Piper, J; Elze, MC; Cauchy, P; Cockerill, PN; Bonifer, C; Ott, S; (2013) Wellington: A novel method for the accurate identification of digital genomic footprints from DNase-seq data. Nucleic acids research, 41 (21). ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkt850

Alsford, S; Horn, D; (2012) Cell-cycle-regulated control of VSG expression site silencing by histones and histone chaperones ASF1A and CAF-1b in Trypanosoma brucei. Nucleic acids research, 40 (20). pp. 10150-60. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gks813

Sillitoe, I; Cuff, AL; Dessailly, BH; Dawson, NL; Furnham, N; Lee, D; Lees, JG; Lewis, TE; Studer, RA; Rentzsch, R; +3 more... Yeats, C; Thornton, JM; Orengo, CA; (2012) New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. Nucleic acids research, 41 (Databa). D490-8. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gks1211

Wilm, A; Aw, PP; Bertrand, D; Yeo, GH; Ong, SH; Wong, CH; Khor, CC; Petric, R; Hibberd, ML; Nagarajan, N; (2012) LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets. Nucleic acids research, 40 (22). pp. 11189-201. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gks918

Furnham, N; Sillitoe, I; Holliday, GL; Cuff, AL; Rahman, SA; Laskowski, RA; Orengo, CA; Thornton, JM; (2011) FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies. Nucleic acids research, 40 (Databa). D776-82. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkr852

Obado, SO; Bot, C; Echeverry, MC; Bayona, JC; Alvarez, VE; Taylor, MC; Kelly, JM; (2011) Centromere-associated topoisomerase activity in bloodstream form Trypanosoma brucei. Nucleic acids research, 39 (3). pp. 1023-33. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkq839

Witney, AA; Waldron, DE; Brooks, LA; Tyler, RH; Withers, M; Stoker, NG; Wren, BW; Butcher, PD; Hinds, J; (2011) B{micro}G@Sbase--a microbial gene expression and comparative genomic database. Nucleic acids research, 40 (Databa). D605-9. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkr796

Cuff, AL; Sillitoe, I; Lewis, T; Clegg, AB; Rentzsch, R; Furnham, N; Pellegrini-Calace, M; Jones, D; Thornton, J; Orengo, CA; (2010) Extending CATH: increasing coverage of the protein structure universe and linking structure with function. Nucleic acids research, 39 (Databa). D420-6. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkq1001

Glover, L; Jun, J; Horn, D; (2010) Microhomology-mediated deletion and gene conversion in African trypanosomes. Nucleic acids research. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkq981

Lee, CW; Koh, CW; Chan, YS; Aw, PP; Loh, KH; Han, BL; Thien, PL; Nai, GY; Hibberd, ML; Wong, CW; +1 more... Sung, WK; (2010) Large-scale evolutionary surveillance of the 2009 H1N1 influenza A virus using resequencing arrays. Nucleic acids research, 38 (9). e111. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkq089

Turro, E; Lewin, A; Rose, A; Dallman, MJ; Richardson, S; (2009) MMBGX: a method for estimating expression at the isoform level and detecting differential splicing using whole-transcript Affymetrix arrays. Nucleic acids research, 38 (1). e4. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkp853

Glover, L; McCulloch, R; Horn, D; (2008) Sequence homology and microhomology dominate chromosomal double-strand break repair in African trypanosomes. Nucleic acids research, 36 (8). pp. 2608-18. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkn104

Glover, L; Alsford, S; Beattie, C; Horn, D; (2007) Deletion of a trypanosome telomere leads to loss of silencing and progressive loss of terminal DNA in the absence of cell cycle arrest. Nucleic acids research, 35 (3). pp. 872-80. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkl1100