Items where Faculty or Department is "Faculty of Infectious and Tropical Diseases > Department of Infection Biology > Dept of Pathogen Molecular Biology (-2019)"

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Number of items: 201.

A

Adjogatse, Eyram; Erskine, Peter; Wells, Stephen A; Kelly, John M; Wilden, Jonathan D; Chan, AW Edith; Selwood, David; Coker, Alun; Wood, Steve; Cooper, Jonathan B; (2018) Structure and function of L-threonine-3-dehydrogenase from the parasitic protozoan Trypanosoma brucei revealed by X-ray crystallography and geometric simulations. Acta crystallographica Section D, Structural biology, 74 (Pt 9). pp. 861-876. ISSN 2059-7983 DOI: https://doi.org/10.1107/S2059798318009208
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Akuffo, Hannah; Costa, Carlos; van Griensven, Johan; Burza, Sakib; Moreno, Javier; Herrero, Mercè; (2018) New insights into leishmaniasis in the immunosuppressed. PLoS neglected tropical diseases, 12 (5). e0006375-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006375
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AlShaikhahmed, Kinda; Leonov, German; Sung, Po-Yu; Bingham, Richard J; Twarock, Reidun; Roy, Polly; (2018) Dynamic network approach for the modelling of genomic sub-complexes in multi-segmented viruses. Nucleic acids research, 46 (22). pp. 12087-12098. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gky881
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Amambua-Ngwa, Alfred; Jeffries, David; Amato, Roberto; Worwui, Archibald; Karim, Mane; Ceesay, Sukai; Nyang, Haddy; Nwakanma, Davis; Okebe, Joseph; Kwiatkowski, Dominic; +2 more... Conway, David J; D'Alessandro, Umberto; (2018) Consistent signatures of selection from genomic analysis of pairs of temporal and spatial Plasmodium falciparum populations from The Gambia. Scientific reports, 8 (1). 9687-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-28017-5
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Ampah, Khamal K; Greaves, Jennifer; Shun-Shion, Amber S; Asnawi, Asral W; Lidster, Jessica A; Chamberlain, Luke H; Collins, Mark O; Peden, Andrew A; (2018) S-acylation regulates the trafficking and stability of the unconventional Q-SNARE STX19. Journal of cell science, 131 (20). jcs212498-jcs212498. ISSN 0021-9533 DOI: https://doi.org/10.1242/jcs.212498
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Ashley, Elizabeth A; Shetty, Nandini; Patel, Jean; van Doorn, Rogier; Limmathurotsakul, Direk; Feasey, Nicholas A; Okeke, Iruka N; Peacock, Sharon J; (2018) Harnessing alternative sources of antimicrobial resistance data to support surveillance in low-resource settings. Journal of Antimicrobial Chemotherapy, 74 (3). pp. 541-546. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dky487
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Auburn, Sarah; Benavente, Ernest D; Miotto, Olivo; Pearson, Richard D; Amato, Roberto; Grigg, Matthew J; Barber, Bridget E; William, Timothy; Handayuni, Irene; Marfurt, Jutta; +9 more... Trimarsanto, Hidayat; Noviyanti, Rintis; Sriprawat, Kanlaya; Nosten, Francois; Campino, Susana; Clark, Taane G; Anstey, Nicholas M; Kwiatkowski, Dominic P; Price, Ric N; (2018) Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics. Nature communications, 9 (1). 2585-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-04965-4
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B

Baddam, R; Kumar, N; Wieler, LH; Lankapalli, AK; Ahmed, N; Peacock, SJ; Semmler, T; (2018) Author Correction: Analysis of mutations in pncA reveals non-overlapping patterns among various lineages of Mycobacterium tuberculosis. Nature Research (part of Springer Nature). DOI: https://doi.org/10.1038/s41598-018-25809-7
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Baddam, Ramani; Kumar, Narender; Wieler, Lothar H; Lankapalli, Aditya Kumar; Ahmed, Niyaz; Peacock, Sharon J; Semmler, Torsten; (2018) Analysis of mutations in pncA reveals non-overlapping patterns among various lineages of Mycobacterium tuberculosis. Scientific reports, 8 (1). 4628-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-22883-9
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Baker, Kate S; Dallman, Timothy J; Field, Nigel; Childs, Tristan; Mitchell, Holly; Day, Martin; Weill, François-Xavier; Lefèvre, Sophie; Tourdjman, Mathieu; Hughes, Gwenda; +2 more... Jenkins, Claire; Thomson, Nicholas; (2018) Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance. Scientific reports, 8 (1). 7389-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-25764-3
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Baker, Kate S; Dallman, Timothy J; Field, Nigel; Childs, Tristan; Mitchell, Holly; Day, Martin; Weill, François-Xavier; Lefèvre, Sophie; Tourdjman, Mathieu; Hughes, Gwenda; +2 more... Jenkins, Claire; Thomson, Nicholas; (2018) Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species. Nature communications, 9 (1). 1462-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-03949-8
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Bannister, Stephanie A; Kidd, Stephen P; Kirby, Elizabeth; Shah, Sonal; Thomas, Anvy; Vipond, Richard; Elmore, Michael J; Telfer Brunton, Andrew; Marsh, Peter; Green, Steve; +2 more... Silman, Nigel J; Kempsell, Karen E; (2018) Development and Assessment of a Diagnostic DNA Oligonucleotide Microarray for Detection and Typing of Meningitis-Associated Bacterial Species. High-throughput, 7 (4). p. 32. ISSN 2571-5135 DOI: https://doi.org/10.3390/ht7040032
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Behar, Adi; Baker, Kate Susan; Bassal, Ravit; Ezernitchi, Analia; Valinsky, Lea; Thomson, Nicholas R; Cohen, Daniel; (2018) Microevolution and Patterns of Transmission of Shigella sonnei within Cyclic Outbreaks Shigellosis, Israel. EMERGING INFECTIOUS DISEASES, 24 (7). pp. 1335-1339. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2407.171313
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Benavente, Ernest Diez; Oresegun, Damilola R; de Sessions, Paola Florez; Walker, Eloise M; Roper, Cally; Dombrowski, Jamille G; de Souza, Rodrigo M; Marinho, Claudio RF; Sutherland, Colin J; Hibberd, Martin L; +4 more... Mohareb, Fady; Baker, David A; Clark, Taane G; Campino, Susana; (2018) Global genetic diversity of var2csa in Plasmodium falciparum with implications for malaria in pregnancy and vaccine development. Scientific reports, 8 (1). 15429-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-33767-3
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Bhattacharyya, Tapan; Messenger, Louisa A; Bern, Caryn; Mertens, Pascal; Gilleman, Quentin; Zeippen, Nicolas; Bremer Hinckel, Bruno C; Murphy, Niamh; Gilman, Robert H; Miles, Michael A; +1 more... Chagas Working Group in Bolivia and Peru; (2018) Severity of Chagasic Cardiomyopathy Is Associated With Response to a Novel Rapid Diagnostic Test for Trypanosoma cruzi TcII/V/VI. Clinical infectious diseases, 67 (4). pp. 519-524. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy121
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Bistrović, Andrea; Krstulović, Luka; Stolić, Ivana; Drenjančević, Domagoj; Talapko, Jasminka; Taylor, Martin C; Kelly, John M; Bajić, Miroslav; Raić-Malić, Silvana; (2018) Synthesis, anti-bacterial and anti-protozoal activities of amidinobenzimidazole derivatives and their interactions with DNA and RNA. Journal of enzyme inhibition and medicinal chemistry, 33 (1). pp. 1323-1334. ISSN 1475-6366 DOI: https://doi.org/10.1080/14756366.2018.1484733
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Black, Sally; Bradley, Carina; Lai, Florence Y; Shenoy, Savitha; Bandi, Srini; Allen, David J; Tang, Julian W; (2018) Comparing the Clinical Severity of Disease Caused by Enteroviruses and Human Parechoviruses in Neonates and Infants. The Pediatric infectious disease journal, 38 (2). e36-e38. ISSN 0891-3668 DOI: https://doi.org/10.1097/INF.0000000000002145
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Boonyalai, Nonlawat; Collins, Christine R; Hackett, Fiona; Withers-Martinez, Chrislaine; Blackman, Michael J; (2018) Essentiality of Plasmodium falciparum plasmepsin V. PloS one, 13 (12). e0207621-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0207621
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Boonyalai, Nonlawat; Collins, Christine R; Hackett, Fiona; Withers-Martinez, Chrislaine; Blackman, Michael J; (2018) Function and essentiality of Plasmodium falciparum plasmepsin V. BioRxiv. DOI: https://doi.org/10.1101/404798
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Bossé, JT; LI, Y; Sárközi, R; Fodor, L; Lacouture, S; Gottschalk, M; Amoribieta, MC; Angen, Ø; Nedbalcova, K; Holden, MT; +1 more... Wren, B; (2018) Proposal of serovars 17 and 18 of Actinobacillus pleuropneumoniae based on serological and genotypic analysis. Veterinary microbiology. ISSN 0378-1135 DOI: https://doi.org/10.1016/j.vetmic.2018.02.019
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Bossé, Janine T; Li, Yanwen; Fernandez Crespo, Roberto; Lacouture, Sonia; Gottschalk, Marcelo; Sárközi, Rita; Fodor, László; Casas Amoribieta, Maria; Angen, Øystein; Nedbalcova, Katerina; +7 more... Holden, Matthew TG; Maskell, Duncan J; Tucker, Alexander W; Wren, Brendan W; Rycroft, Andrew N; Langford, Paul R; BRaDP1T consortium; (2018) Comparative sequence analysis of the capsular polysaccharide loci of Actinobacillus pleuropneumoniae serovars 1-18, and development of two multiplex PCRs for comprehensive capsule typing. Veterinary microbiology, 220. pp. 83-89. ISSN 0378-1135 DOI: https://doi.org/10.1016/j.vetmic.2018.05.011
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Bossé, Janine T; Li, Yanwen; Sárközi, Rita; Fodor, László; Lacouture, Sonia; Gottschalk, Marcelo; Casas Amoribieta, Maria; Angen, Øystein; Nedbalcova, Katerina; Holden, Matthew TG; +6 more... Maskell, Duncan J; Tucker, Alexander W; Wren, Brendan W; Rycroft, Andrew N; Langford, Paul R; BRaDP1T consortium; (2018) Proposal of serovars 17 and 18 of Actinobacillus pleuropneumoniae based on serological and genotypic analysis. Veterinary microbiology, 217. pp. 1-6. ISSN 0378-1135 DOI: https://doi.org/10.1016/j.vetmic.2018.02.019
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Britto, Carl D; Dyson, Zoe A; Duchene, Sebastian; Carter, Michael J; Gurung, Meeru; Kelly, Dominic F; Murdoch, David R; Ansari, Imran; Thorson, Stephen; Shrestha, Shrijana; +4 more... Adhikari, Neelam; Dougan, Gordon; Holt, Kathryn E; Pollard, Andrew J; (2018) Laboratory and molecular surveillance of paediatric typhoidal Salmonella in Nepal: Antimicrobial resistance and implications for vaccine policy. PLOS NEGLECTED TROPICAL DISEASES, 12 (4). e0006408-. ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0006408
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Brugman, VA; Kristan, M; Gibbins, MP; Angrisano, F; Sala, KA; Dessens, JT; Blagborough, AM; Walker, T; (2018) Detection of malaria sporozoites expelled during mosquito sugar feeding. Scientific reports, 8 (1). 7545-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-26010-6
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Brynildsrud, Ola B; Pepperell, Caitlin S; Suffys, Philip; Grandjean, Louis; Monteserin, Johana; Debech, Nadia; Bohlin, Jon; Alfsnes, Kristian; Pettersson, John O-H; Kirkeleite, Ingerid; +20 more... Fandinho, Fatima; da Silva, Marcia Aparecida; Perdigao, Joao; Portugal, Isabel; Viveiros, Miguel; Clark, Taane; Caws, Maxine; Dunstan, Sarah; Thai, Phan Vuong Khac; Lopez, Beatriz; Ritacco, Viviana; Kitchen, Andrew; Brown, Tyler S; van Soolingen, Dick; O'Neill, Mary B; Holt, Kathryn E; Feil, Edward J; Mathema, Barun; Balloux, Francois; Eldholm, Vegard; (2018) Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation. SCIENCE ADVANCES, 4 (10). eaat5869-. ISSN 2375-2548 DOI: https://doi.org/10.1126/sciadv.aat5869
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Burza, S; Croft, SL; Boelaert, M; (2018) Leishmaniasis. Elsevier. DOI: https://doi.org/10.1016/S0140-6736(18)31204-2 Full text not available from this repository.

C

Cain, Amy K; Boinett, Christine J; Barquist, Lars; Dordel, Janina; Fookes, Maria; Mayho, Matthew; Ellington, Matthew J; Goulding, David; Pickard, Derek; Wick, Ryan R; +3 more... Holt, Kathryn E; Parkhill, Julian; Thomson, Nicholas R; (2018) Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin. Scientific reports, 8 (1). 9868-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-28199-y
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Campino, Susana; Marin-Menendez, Alejandro; Kemp, Alison; Cross, Nadia; Drought, Laura; Otto, Thomas D; Benavente, Ernest Diez; Ravenhall, Matt; Schwach, Frank; Girling, Gareth; +8 more... Manske, Magnus; Theron, Michel; Gould, Kelda; Drury, Eleanor; Clark, Taane G; Kwiatkowski, Dominic P; Pance, Alena; Rayner, Julian C; (2018) A forward genetic screen reveals a primary role for Plasmodium falciparum Reticulocyte Binding Protein Homologue 2a and 2b in determining alternative erythrocyte invasion pathways. PLoS pathogens, 14 (11). e1007436-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1007436
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Claessens, Antoine; Harris, Lynne M; Stanojcic, Slavica; Chappell, Lia; Stanton, Adam; Kuk, Nada; Veneziano-Broccia, Pamela; Sterkers, Yvon; Rayner, Julian C; Merrick, Catherine J; (2018) RecQ helicases in the malaria parasite Plasmodium falciparum affect genome stability, gene expression patterns and DNA replication dynamics. PLoS genetics, 14 (7). e1007490-. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1007490
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Coll, Francesc; Phelan, Jody; Hill-Cawthorne, Grant A; Nair, Mridul B; Mallard, Kim; Ali, Shahjahan; Abdallah, Abdallah M; Alghamdi, Saad; Alsomali, Mona; Ahmed, Abdallah O; +41 more... Portelli, Stephanie; Oppong, Yaa; Alves, Adriana; Bessa, Theolis Barbosa; Campino, Susana; Caws, Maxine; Chatterjee, Anirvan; Crampin, Amelia C; Dheda, Keertan; Furnham, Nicholas; Glynn, Judith R; Grandjean, Louis; Ha, Dang Minh; Hasan, Rumina; Hasan, Zahra; Hibberd, Martin L; Joloba, Moses; Jones-López, Edward C; Matsumoto, Tomoshige; Miranda, Anabela; Moore, David J; Mocillo, Nora; Panaiotov, Stefan; Parkhill, Julian; Penha, Carlos; Perdigão, João; Portugal, Isabel; Rchiad, Zineb; Robledo, Jaime; Sheen, Patricia; Shesha, Nashwa Talaat; Sirgel, Frik A; Sola, Christophe; Sousa, Erivelton Oliveira; Streicher, Elizabeth M; Van Helden, Paul; Viveiros, Miguel; Warren, Robert M; McNerney, Ruth; Pain, Arnab; Clark, Taane G; (2018) Author Correction: Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics, 50 (5). 764-. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-018-0074-3 Full text not available from this repository.

Coll, Francesc; Phelan, Jody; Hill-Cawthorne, Grant A; Nair, Mridul B; Mallard, Kim; Ali, Shahjahan; Abdallah, Abdallah M; Alghamdi, Saad; Alsomali, Mona; Ahmed, Abdallah O; +41 more... Portelli, Stephanie; Oppong, Yaa; Alves, Adriana; Bessa, Theolis Barbosa; Campino, Susana; Caws, Maxine; Chatterjee, Anirvan; Crampin, Amelia C; Dheda, Keertan; Furnham, Nicholas; Glynn, Judith R; Grandjean, Louis; Minh Ha, Dang; Hasan, Rumina; Hasan, Zahra; Hibberd, Martin L; Joloba, Moses; Jones-López, Edward C; Matsumoto, Tomoshige; Miranda, Anabela; Moore, David J; Mocillo, Nora; Panaiotov, Stefan; Parkhill, Julian; Penha, Carlos; Perdigão, João; Portugal, Isabel; Rchiad, Zineb; Robledo, Jaime; Sheen, Patricia; Shesha, Nashwa Talaat; Sirgel, Frik A; Sola, Christophe; Oliveira Sousa, Erivelton; Streicher, Elizabeth M; Helden, Paul Van; Viveiros, Miguel; Warren, Robert M; McNerney, Ruth; Pain, Arnab; Clark, Taane G; (2018) Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics, 50 (2). pp. 307-316. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-017-0029-0
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Cook, Sarah; Malyutina, Sofia; Kudryavtsev, Alexander V; Averina, Maria; Bobrova, Natalia; Boytsov, Sergey; Brage, Soren; Clark, Taane G; Diez Benavente, Ernest; Eggen, Anne Elise; +26 more... Hopstock, Laila A; Hughes, Alun; Johansen, Heidi; Kholmatova, Kamila; Kichigina, Anastasiya; Kontsevaya, Anna; Kornev, Michael; Leong, Darryl; Magnus, Per; Mathiesen, Ellisiv; McKee, Martin; Morgan, Katy; Nilssen, Odd; Plakhov, Ilya; Quint, Jennifer K; Rapala, Alicja; Ryabikov, Andrey; Saburova, Lyudmila; Schirmer, Henrik; Shapkina, Marina; Shiekh, Suhail; Shkolnikov, Vladimir M; Stylidis, Michael; Voevoda, Michael; Westgate, Kate; Leon, David A; (2018) Know Your Heart: Rationale, design and conduct of a cross-sectional study of cardiovascular structure, function and risk factors in 4500 men and women aged 35-69 years from two Russian cities, 2015-18. Wellcome open research, 3. 67-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.14619.3
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Cook, Sarah; Malyutina, Sofia; Kudryavtsev, Alexander V; Averina, Maria; Bobrova, Natalia; Boytsov, Sergey; Brage, Soren; Clark, Taane G; Diez Benavente, Ernest; Eggen, Anne Elise; +26 more... Hopstock, Laila A; Hughes, Alun; Johansen, Heidi; Kholmatova, Kamila; Kichigina, Anastasiya; Kontsevaya, Anna; Kornev, Michael; Leong, Darryl; Magnus, Per; Mathiesen, Ellisiv; McKee, Martin; Morgan, Katy; Nilssen, Odd; Plakhov, Ilya; Quint, Jennifer K; Rapala, Alicja; Ryabikov, Andrey; Saburova, Lyudmila; Schirmer, Henrik; Shapkina, Marina; Shiekh, Suhail; Shkolnikov, Vladimir M; Stylidis, Michael; Voevoda, Michael; Westgate, Kate; Leon, David A; (2018) Know Your Heart: Rationale, design and conduct of a cross-sectional study of cardiovascular structure, function and risk factors in 4500 men and women aged 35-69 years from two Russian cities, 2015-18. Wellcome Open Research, 3. 67-. DOI: https://doi.org/10.12688/wellcomeopenres.14619.3
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Cook, Sarah; Malyutina, Sofia; Kudryavtsev, Alexander; Averina, Maria; Bobrova, Natalia; Boytsov, Sergey; Brage, Soren; Clark, Taane; Diez Benavente, Ernest; Eggen, Anne Elise; +26 more... Hopstock, Laila; Hughes, Alun; Johansen, Heidi; Kholmatova, Kamila; Kichigina, Anastasiya; Kontsevaya, Anna; Kornev, Michael; Leong, Darryl; Magnus, Per; Mathiesen, Ellisiv; McKee, Martin; Morgan, Katy; Nilssen, Odd; Plakhov, Ilya; Quint, Jennifer; Rapala, Alicja; Ryabikov, Andrey; Saburova, Lyudmila; Schirmer, Henrik; Shapkina, Marina; Shiekh, Suhail; Shkolnikov, Vladimir; Stylidis, Michael; Voevoda, Michael; Westgate, Kate; Leon, David; (2018) Know Your Heart: Rationale, design and conduct of a cross-sectional study of cardiovascular structure, function and risk factors in 4500 men and women aged 35-69 years from two Russian cities, 2015-18. Wellcome Open Research, 3. 67-67-. DOI: https://doi.org/10.12688/wellcomeopenres.14619.1
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Corbin, Laura J; Tan, Vanessa Y; Hughes, David A; Wade, Kaitlin H; Paul, Dirk S; Tansey, Katherine E; Butcher, Frances; Dudbridge, Frank; Howson, Joanna M; Jallow, Momodou W; +21 more... John, Catherine; Kingston, Nathalie; Lindgren, Cecilia M; O'Donavan, Michael; O'Rahilly, Stephen; Owen, Michael J; Palmer, Colin NA; Pearson, Ewan R; Scott, Robert A; van Heel, David A; Whittaker, John; Frayling, Tim; Tobin, Martin D; Wain, Louise V; Smith, George Davey; Evans, David M; Karpe, Fredrik; McCarthy, Mark I; Danesh, John; Franks, Paul W; Timpson, Nicholas J; (2018) Formalising recall by genotype as an efficient approach to detailed phenotyping and causal inference. Nature communications, 9 (1). 711-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-03109-y
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D

Deligianni, Elena; Silmon de Monerri, Natalie C; McMillan, Paul J; Bertuccini, Lucia; Superti, Fabiana; Manola, Maria; Spanos, Lefteris; Louis, Christos; Blackman, Michael J; Tilley, Leann; +1 more... Siden-Kiamos, Inga; (2018) Essential role of Plasmodium perforin-like protein 4 in ookinete midgut passage. PloS one, 13 (8). e0201651-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0201651
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Domman, Daryl; Chowdhury, Fahima; Khan, Ashraful I; Dorman, Matthew J; Mutreja, Ankur; Uddin, Muhammad Ikhtear; Paul, Anik; Begum, Yasmin A; Charles, Richelle C; Calderwood, Stephen B; +6 more... Bhuiyan, Taufiqur R; Harris, Jason B; LaRocque, Regina C; Ryan, Edward T; Qadri, Firdausi; Thomson, Nicholas R; (2018) Defining endemic cholera at three levels of spatiotemporal resolution within Bangladesh. Nature genetics, 50 (7). pp. 951-955. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-018-0150-8
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Duchene, Sebastian; Duchene, David A; Geoghegan, Jemma L; Dyson, Zoe A; Hawkey, Jane; Holt, Kathryn E; (2018) Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods. BMC EVOLUTIONARY BIOLOGY, 18 (1). 95-. ISSN 1471-2148 DOI: https://doi.org/10.1186/s12862-018-1210-5
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Duffy, Craig W; Amambua-Ngwa, Alfred; Ahouidi, Ambroise D; Diakite, Mahamadou; Awandare, Gordon A; Ba, Hampate; Tarr, Sarah J; Murray, Lee; Stewart, Lindsay B; D'Alessandro, Umberto; +3 more... Otto, Thomas D; Kwiatkowski, Dominic P; Conway, David J; (2018) Multi-population genomic analysis of malaria parasites indicates local selection and differentiation at the gdv1 locus regulating sexual development. Scientific reports, 8 (1). 15763-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-34078-3
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de Alwis, Ruklanthi; Tu, Le Thi Phuong; Quynh, Nhi Le Thi; Thompson, Corinne N; Anders, Katherine L; Van Thuy, Nguyen Thi; Hieu, Nguyen Trong; Vi, Lu Lan; Chau, Nguyen Van Vinh; Duong, Vu Thuy; +10 more... Chau, Tran Thi Hong; Tuyen, Ha Thanh; Nga, Tran Vu Thieu; Minh, Pham Van; Tan, Trinh Van; Thu, Trang Nguyen Hoang; Nhu, Tran Do Hoang; Thwaites, Guy E; Simmons, Cameron; Baker, Stephen; (2018) The Role of Maternally Acquired Antibody in Providing Protective Immunity Against Nontyphoidal Salmonella in Urban Vietnamese Infants: A Birth Cohort Study. The Journal of infectious diseases, 219 (2). pp. 295-304. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiy501
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de Goffau, Marcus C; Lager, Susanne; Salter, Susannah J; Wagner, Josef; Kronbichler, Andreas; Charnock-Jones, D Stephen; Peacock, Sharon J; Smith, Gordon CS; Parkhill, Julian; (2018) Recognizing the reagent microbiome. Nature microbiology, 3 (8). pp. 851-853. ISSN 2058-5276 DOI: https://doi.org/10.1038/s41564-018-0202-y Full text not available from this repository.

E

Elsheikha, Hany M; Regan, Carl S; Clark, C Graham; (2018) Novel Entamoeba Findings in Nonhuman Primates. Trends in parasitology, 34 (4). pp. 283-294. ISSN 1471-4922 DOI: https://doi.org/10.1016/j.pt.2017.12.008
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F

Fang, Hanwei; Gomes, Ana Rita; Klages, Natacha; Pino, Paco; Maco, Bohumil; Walker, Eloise M; Zenonos, Zenon A; Angrisano, Fiona; Baum, Jake; Doerig, Christian; +3 more... Baker, David A; Billker, Oliver; Brochet, Mathieu; (2018) Epistasis studies reveal redundancy among calcium-dependent protein kinases in motility and invasion of malaria parasites. Nature communications, 9 (1). 4248-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-06733-w
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Faulds-Pain, Alexandra; Shaw, Helen Alexandra; Terra, Vanessa Sofia; Kellner, Steven; Brockmeier, Susan L; Wren, Brendan W; (2018) The Streptococcos suis sortases SrtB and SrtF are essential for disease in pigs. Microbiology, 165 (2). pp. 163-173. ISSN 1350-0872 DOI: https://doi.org/10.1099/mic.0.000752
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Ferreras Antolín, Laura; Kadambari, Seilesh; Braccio, Serena; Tang, Julian Wei-Tze; Xerry, Jacqueline; Allen, David James; Ladhani, Shamez N; Parechovirus Surveillance Network; (2018) Increased detection of human parechovirus infection in infants in England during 2016: epidemiology and clinical characteristics. Archives of disease in childhood, 103 (11). pp. 1061-1066. ISSN 0003-9888 DOI: https://doi.org/10.1136/archdischild-2017-314281 Full text not available from this repository.

Fukuda, Keiji; Limmathurotsakul, Direk; Okeke, Iruka N; Shetty, Nandini; van Doorn, Rogier; Feasey, Nicholas A; Chiara, Francesca; Zoubiane, Ghada; Jinks, Tim; Parkhill, Julian; +5 more... Patel, Jean; Reid, Stuart WJ; Holmes, Alison H; Peacock, Sharon J; Surveillance and Epidemiology of Drug Resistant Infections Conso; (2018) Surveillance and Epidemiology of Drug Resistant Infections Consortium (SEDRIC): Supporting the transition from strategy to action. Wellcome open research, 3. 59-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.14586.2
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Torrellas, Annhymariet; Ferrer, Elizabeth; Cruz, Israel; Lima, Héctor de; Delgado, Olinda; Rangel, José Carrero; Bravo, José Arturo; Chicharro, Carmen; Llanes-Acevedo, Ivonne Pamela; Miles, Michael A; +1 more... Feliciangeli, María Dora; (2018) Molecular typing reveals the co-existence of two transmission cycles of American cutaneous leishmaniasis in the Andean Region of Venezuela with Lutzomyia migonei as the vector. Memorias do Instituto Oswaldo Cruz, 113 (12). e180323-. ISSN 1678-8060 DOI: https://doi.org/10.1590/0074-02760180323
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Ugarte-Ruiz, Maria; Domínguez, Lucas; Corcionivoschi, Nicolae; Wren, Brendan W; Dorrell, Nick; Gundogdu, Ozan; (2018) Exploring the oxidative, antimicrobial and genomic properties of Campylobacter jejuni strains isolated from poultry. Research in veterinary science, 119. pp. 170-175. ISSN 0034-5288 DOI: https://doi.org/10.1016/j.rvsc.2018.06.016
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Van Nguyen, Dung; Van Nguyen, Cuong; Bonsall, David; Ngo, Tue Tri; Carrique-Mas, Juan; Pham, Anh Hong; Bryant, Juliet E; Thwaites, Guy; Baker, Stephen; Woolhouse, Mark; +1 more... Simmonds, Peter; (2018) Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam. Viruses, 10 (3). p. 102. ISSN 1999-4915 DOI: https://doi.org/10.3390/v10030102
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van Beek, Anna E; Sarr, Isatou; Correa, Simon; Nwakanma, Davis; Brouwer, Mieke C; Wouters, Diana; Secka, Fatou; Anderson, Suzanne TB; Conway, David J; Walther, Michael; +3 more... Levin, Michael; Kuijpers, Taco W; Cunnington, Aubrey J; (2018) Complement Factor H Levels Associate With Plasmodium falciparum Malaria Susceptibility and Severity. Open forum infectious diseases, 5 (7). ofy166-. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofy166
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Watts, Stephen C; Ritchie, Scott C; Inouye, Michael; Holt, Kathryn E; (2018) FastSpar: rapid and scalable correlation estimation for compositional data. Bioinformatics, 35 (6). pp. 1064-1066. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/bty734
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Wick, Ryan R; Heinz, Eva; Holt, Kathryn E; Wyres, Kelly L; (2018) Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes. JOURNAL OF CLINICAL MICROBIOLOGY, 56 (6). ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.00197-18
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Wick, Ryan R; Judd, Louise M; Holt, Kathryn E; (2018) Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks. PLoS computational biology, 14 (11). e1006583-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1006583
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Wiersinga, W Joost; Virk, Harjeet S; Torres, Alfredo G; Currie, Bart J; Peacock, Sharon J; Dance, David AB; Limmathurotsakul, Direk; (2018) Melioidosis. Nature reviews Disease primers, 4 (1). 17107-. ISSN 2056-676X DOI: https://doi.org/10.1038/nrdp.2017.107 Full text not available from this repository.

Wright, Victoria J; Herberg, Jethro A; Kaforou, Myrsini; Shimizu, Chisato; Eleftherohorinou, Hariklia; Shailes, Hannah; Barendregt, Anouk M; Menikou, Stephanie; Gormley, Stuart; Berk, Maurice; +11 more... Hoang, Long Truong; Tremoulet, Adriana H; Kanegaye, John T; Coin, Lachlan JM; Glodé, Mary P; Hibberd, Martin; Kuijpers, Taco W; Hoggart, Clive J; Burns, Jane C; Levin, Michael; Immunopathology of Respiratory, Inflammatory and Infectious Dise; (2018) Diagnosis of Kawasaki Disease Using a Minimal Whole-Blood Gene Expression Signature. JAMA Pediatrics, 172 (10). e182293-. ISSN 2168-6203 DOI: https://doi.org/10.1001/jamapediatrics.2018.2293
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Wyres, Kelly L; Hawkey, Jane; Hetland, Marit AK; Fostervold, Aasmund; Wick, Ryan R; Judd, Louise M; Hamidian, Mohammad; Howden, Benjamin P; Löhr, Iren H; Holt, Kathryn E; (2018) Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307. DOI: https://doi.org/10.1101/352740
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Wyres, Kelly L; Hawkey, Jane; Hetland, Marit AK; Fostervold, Aasmund; Wick, Ryan R; Judd, Louise M; Hamidian, Mohammad; Howden, Benjamin P; Löhr, Iren H; Holt, Kathryn E; (2018) Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307. The Journal of antimicrobial chemotherapy, 74 (3). pp. 577-581. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dky492
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Wyres, Kelly L; Wick, Ryan R; Judd, Louise M; Froumine, Roni; Tokolyi, Alex; Gorrie, Claire L; Lam, Margaret MC; Duchêne, Sebastián; Jenney, Adam; Holt, Kathryn E; (2018) Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae. DOI: https://doi.org/10.1101/414235
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Zhou, Zhemin; Lundstrøm, Inge; Tran-Dien, Alicia; Duchêne, Sebastián; Alikhan, Nabil-Fareed; Sergeant, Martin J; Langridge, Gemma; Fotakis, Anna K; Nair, Satheesh; Stenøien, Hans K; +9 more... Hamre, Stian S; Casjens, Sherwood; Christophersen, Axel; Quince, Christopher; Thomson, Nicholas R; Weill, François-Xavier; Ho, Simon YW; Gilbert, M Thomas P; Achtman, Mark; (2018) Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia. CURRENT BIOLOGY, 28 (15). 2420-2428.e10. ISSN 0960-9822 DOI: https://doi.org/10.1016/j.cub.2018.05.058
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Zhu, Yuan O; Aw, Pauline; Aung, Myo Myint; Lee, Hong Kai; Hibberd, Martin; Lee, Guan Huei; (2018) Patterns of mutation within an emerging endemic lineage of HEV-3a. Journal of viral hepatitis, 26 (1). pp. 191-198. ISSN 1352-0504 DOI: https://doi.org/10.1111/jvh.13015 Full text not available from this repository.

This list was generated on Fri Jul 10 05:40:31 2020 BST.