Acosta, N; López, E; Lewis, MD; Llewellyn, MS; Gómez, A; Román, F; Miles, MA; Yeo, M; (2017) Hosts and vectors of Trypanosoma cruzi discrete typing units in the Chagas disease endemic region of the Paraguayan Chaco. Parasitology. pp. 1-15. ISSN 0031-1820 DOI: https://doi.org/10.1017/S0031182016002663

Ajileye, A; Alvarez, N; Merker, M; Walker, TM; Akter, S; Brown, K; Moradigaravand, D; Schön, T; Andres, S; Schleusener, V; +14 more... Omar, SV; Coll, F; Huang, H; Diel, R; Ismail, N; Parkhill, J; de Jong, BC; Peto, TE; Crook, DW; Niemann, S; Robledo, J; Smith, EG; Peacock, SJ; Köser, CU; (2017) Some synonymous and non-synonymous gyrA mutations in Mycobacterium tuberculosis lead to systematic false-resistance results to fluoroquinolones with the Hain GenoType MTBDRsl assays. Antimicrobial agents and chemotherapy. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.02169-16

Allen, DJ; Harris, JP; (2017) Methods for ascertaining norovirus disease burdens. Human vaccines & immunotherapeutics. ISSN 2164-5515 DOI: https://doi.org/10.1080/21645515.2017.1360455

Allen, David J; Harris, John P; (2017) Methods for ascertaining norovirus disease burdens. HUMAN VACCINES & IMMUNOTHERAPEUTICS, 13 (11). pp. 2630-2636. ISSN 2164-5515 DOI: https://doi.org/10.1080/21645515.2017.1360455

Andreu, N; Phelan, J; de Sessions, PF; Cliff, JM; Clark, TG; Hibberd, ML; (2017) Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. Scientific reports, 7. p. 42225. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep42225

Ang, Michelle LT; Rahim, Siti Z Zainul; de Sessions, Paola Florez; Lin, Wenwei; Koh, Vanessa; Pethe, Kevin; Hibberd, Martin L; Alonso, Sylvie; (2017) EthA/R-Independent Killing of Mycobacterium tuberculosis by Ethionamide. FRONTIERS IN MICROBIOLOGY, 8 (APR). ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2017.00710

Aung, T; Ozaki, M; Lee, MC; Schlötzer-Schrehardt, U; Thorleifsson, G; Mizoguchi, T; Igo, RPJr; Haripriya, A; Williams, SE; Astakhov, YS; +279 more... Orr, AC; Burdon, KP; Nakano, S; Mori, K; Abu-Amero, K; Hauser, M; Li, Z; Prakadeeswari, G; Bailey, JNC; Cherecheanu, AP; Kang, JH; Nelson, S; Hayashi, K; Manabe, SI; Kazama, S; Zarnowski, T; Inoue, K; Irkec, M; Coca-Prados, M; Sugiyama, K; Järvelä, I; Schlottmann, P; Lerner, SF; Lamari, H; Nilgün, Y; Bikbov, M; Park, KH; Cha, SC; Yamashiro, K; Zenteno, JC; Jonas, JB; Kumar, RS; Perera, SA; Chan, ASY; Kobakhidze, N; George, R; Vijaya, L; Do, T; Edward, DP; de Juan Marcos, L; Pakravan, M; Moghimi, S; Ideta, R; Bach-Holm, D; Kappelgaard, P; Wirostko, B; Thomas, S; Gaston, D; Bedard, K; Greer, WL; Yang, Z; Chen, X; Huang, L; Sang, J; Jia, H; Jia, L; Qiao, C; Zhang, H; Liu, X; Zhao, B; Wang, YX; Xu, L; Leruez, S; Reynier, P; Chichua, G; Tabagari, S; Uebe, S; Zenkel, M; Berner, D; Mossböck, G; Weisschuh, N; Hoja, U; Welge-Luessen, UC; Mardin, C; Founti, P; Chatzikyriakidou, A; Pappas, T; Anastasopoulos, E; Lambropoulos, A; Ghosh, A; Shetty, R; Porporato, N; Saravanan, V; Venkatesh, R; Shivkumar, C; Kalpana, N; Sarangapani, S; Kanavi, MR; Beni, AN; Yazdani, S; Lashay, A; Naderifar, H; Khatibi, N; Fea, A; Lavia, C; Dallorto, L; Rolle, T; Frezzotti, P; Paoli, D; Salvi, E; Manunta, P; Mori, Y; Miyata, K; Higashide, T; Chihara, E; Ishiko, S; Yoshida, A; Yanagi, M; Kiuchi, Y; Ohashi, T; Sakurai, T; Sugimoto, T; Chuman, H; Aihara, M; Inatani, M; Miyake, M; Gotoh, N; Matsuda, F; Yoshimura, N; Ikeda, Y; Ueno, M; Sotozono, C; Jeoung, JW; Sagong, M; Park, KH; Ahn, J; Cruz-Aguilar, M; Ezzouhairi, SM; Rafei, A; Chong, YF; Ng, XY; Goh, SR; Chen, Y; Yong, VHK; Khan, MI; Olawoye, OO; Ashaye, AO; Ugbede, I; Onakoya, A; Kizor-Akaraiwe, N; Teekhasaenee, C; Suwan, Y; Supakontanasan, W; Okeke, S; Uche, NJ; Asimadu, I; Ayub, H; Akhtar, F; Kosior-Jarecka, E; Lukasik, U; Lischinsky, I; Castro, V; Grossmann, RP; Megevand, GS; Roy, S; Dervan, E; Silke, E; Rao, A; Sahay, P; Fornero, P; Cuello, O; Sivori, D; Zompa, T; Mills, RA; Souzeau, E; Mitchell, P; Wang, JJ; Hewitt, AW; Coote, M; Crowston, JG; Astakhov, SY; Akopov, EL; Emelyanov, A; Vysochinskaya, V; Kazakbaeva, G; Fayzrakhmanov, R; Al-Obeidan, SA; Owaidhah, O; Aljasim, LA; Chowbay, B; Foo, JN; Soh, RQ; Sim, KS; Xie, Z; Cheong, AWO; Mok, SQ; Soo, HM; Chen, XY; Peh, SQ; Heng, KK; Husain, R; Ho, SL; Hillmer, AM; Cheng, CY; Escudero-Domínguez, FA; González-Sarmiento, R; Martinon-Torres, F; Salas, A; Pathanapitoon, K; Hansapinyo, L; Wanichwecharugruang, B; Kitnarong, N; Sakuntabhai, A; Nguyn, HX; Nguyn, GTT; Nguyn, TV; Zenz, W; Binder, A; Klobassa, DS; Hibberd, ML; Davila, S; Herms, S; Nöthen, MM; Moebus, S; Rautenbach, RM; Ziskind, A; Carmichael, TR; Ramsay, M; Álvarez, L; García, M; González-Iglesias, H; Rodríguez-Calvo, PP; Cueto, LF; Oguz, Ç; Tamcelik, N; Atalay, E; Batu, B; Aktas, D; Kasım, B; Wilson, MR; Coleman, AL; Liu, Y; Challa, P; Herndon, L; Kuchtey, RW; Kuchtey, J; Curtin, K; Chaya, CJ; Crandall, A; Zangwill, LM; Wong, TY; Nakano, M; Kinoshita, S; den Hollander, AI; Vesti, E; Fingert, JH; Lee, RK; Sit, AJ; Shingleton, BJ; Wang, N; Cusi, D; Qamar, R; Kraft, P; Pericak-Vance, MA; Raychaudhuri, S; Heegaard, S; Kivelä, T; Reis, A; Kruse, FE; Weinreb, RN; Pasquale, LR; Haines, JL; Thorsteinsdottir, U; Jonasson, F; Allingham, RR; Milea, D; Ritch, R; Kubota, T; Tashiro, K; Vithana, EN; Micheal, S; Topouzis, F; Craig, JE; Dubina, M; Sundaresan, P; Stefansson, K; Wiggs, JL; Pasutto, F; Khor, CC; (2017) Genetic association study of exfoliation syndrome identifies a protective rare variant at LOXL1 and five new susceptibility loci. Nature genetics. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3875 Full text not available from this repository.

Baggaley, RF; Irvine, MA; Leber, W; Cambiano, V; Figueroa, J; McMullen, H; Anderson, J; Santos, AC; Terris-Prestholt, F; Miners, A; +2 more... Hollingsworth, TD; Griffiths, CJ; (2017) Cost-effectiveness of screening for HIV in primary care: a health economics modelling analysis. The lancet HIV. ISSN 2405-4704 DOI: https://doi.org/10.1016/S2352-3018(17)30123-6

Bah, A; Pasricha, SR; Jallow, MW; Sise, EA; Wegmuller, R; Armitage, AE; Drakesmith, H; Moore, SE; Prentice, AM; (2017) Serum Hepcidin Concentrations Decline during Pregnancy and May Identify Iron Deficiency: Analysis of a Longitudinal Pregnancy Cohort in The Gambia. The Journal of nutrition, 147 (6). pp. 1131-1137. ISSN 0022-3166 DOI: https://doi.org/10.3945/jn.116.245373

Baker, DA; Drought, LG; Flueck, C; Nofal, SD; Patel, A; Penzo, M; Walker, EM; (2017) Cyclic nucleotide signalling in malaria parasites. Open biology, 7 (12). ISSN 2046-2441 DOI: https://doi.org/10.1098/rsob.170213

Baker, DA; Stewart, LB; Large, JM; Bowyer, PW; Ansell, KH; Jiménez-Díaz, MB; El Bakkouri, M; Birchall, K; Dechering, KJ; Bouloc, NS; +19 more... Coombs, PJ; Whalley, D; Harding, DJ; Smiljanic-Hurley, E; Wheldon, MC; Walker, EM; Dessens, JT; Lafuente, MJ; Sanz, LM; Gamo, FJ; Ferrer, SB; Hui, R; Bousema, T; Angulo-Barturén, I; Merritt, AT; Croft, SL; Gutteridge, WE; Kettleborough, CA; Osborne, SA; (2017) A potent series targeting the malarial cGMP-dependent protein kinase clears infection and blocks transmission. Nature communications, 8 (1). p. 430. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-017-00572-x

Baker, KS; Campos, J; Pichel, M; Della Gaspera, A; Duarte-Martínez, F; Campos-Chacón, E; Bolaños-Acuña, HM; Guzmán-Verri, C; Mather, AE; Diaz Velasco, S; +19 more... Zamudio Rojas, ML; Forbester, JL; Connor, TR; Keddy, KH; Smith, AM; López de Delgado, EA; Angiolillo, G; Cuaical, N; Fernández, J; Aguayo, C; Morales Aguilar, M; Valenzuela, C; Morales Medrano, AJ; Sirok, A; Weiler Gustafson, N; Diaz Guevara, PL; Montaño, LA; Perez, E; Thomson, NR; (2017) Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses. Clinical microbiology and infection. ISSN 1198-743X DOI: https://doi.org/10.1016/j.cmi.2017.03.021

Bednarska, NG; Wren, BW; Willcocks, SJ; (2017) The importance of the glycosylation of antimicrobial peptides: natural and synthetic approaches. Drug discovery today. ISSN 1359-6446 DOI: https://doi.org/10.1016/j.drudis.2017.02.001

Benavente, ED; de Sessions, PF; Moon, RW; Grainger, M; Holder, AA; Blackman, MJ; Roper, C; Drakeley, CJ; Pain, A; Sutherland, CJ; +3 more... Hibberd, ML; Campino, S; Clark, TG; (2017) A reference genome and methylome for the Plasmodium knowlesi A1-H.1 line. International journal for parasitology. ISSN 0020-7519 DOI: https://doi.org/10.1016/j.ijpara.2017.09.008

Berger, CN; Crepin, VF; Roumeliotis, TI; Wright, JC; Carson, D; Pevsner-Fischer, M; Furniss, RCD; Dougan, G; Dori-Bachash, M; Yu, L; +6 more... Clements, A; Collins, JW; Elinav, E; Larrouy-Maumus, GJ; Choudhary, JS; Frankel, G; (2017) Citrobacter rodentium Subverts ATP Flux and Cholesterol Homeostasis in Intestinal Epithelial Cells In Vivo. Cell metabolism, 26 (5). 738-752.e6. ISSN 1550-4131 DOI: https://doi.org/10.1016/j.cmet.2017.09.003

Bernays, S; Bukenya, D; Thompson, C; Ssembajja, F; Seeley, J; (2017) Being an 'adolescent': The consequences of gendered risks for young people in rural Uganda. Childhood (Copenhagen, Denmark), 25 (1). pp. 19-33. ISSN 0907-5682 DOI: https://doi.org/10.1177/0907568217732119

Berto, A; Anh, PH; Carrique-Mas, JJ; Simmonds, P; Van Cuong, N; Tue, NT; Van Dung, N; Woolhouse, ME; Smith, I; Marsh, GA; +108 more... Bryant, JE; Thwaites, GE; Baker, S; Rabaa, MA; VIZIONS consortium; , COLLABORATORS; Kiet, BT; Boni, MF; Phu, BD; Campbell, JI; Hung, DM; Huong, DT; Oanh, DT; Day, JN; Van Tan, D; van Doorn, HR; Han, DA; Farrar, JJ; Trang, HTT; Nghia, HDT; Long, HB; Van Duong, H; Thu, HTK; Cuong, LC; Hung, M; Phuong, T; Phuc, T; Phuong, T; Luat, X; Ha, LTT; Van Chuong, L; Loan, MTP; Nadjm, B; Bao, NT; Tu, NC; Thuan, ND; Dong, N; Chuyen, NK; An, NN; Vinh, NN; Hung, NQ; Dung, NT; Minh, NT; Binh, NT; Tham, NTH; Tien, NTH; Chuc, NTK; Le Ngoc, NT; Ha, NTL; Lien, NTN; Diep, NTN; Nhung, NT; Chau, NTS; Chi, NTY; Trinh, NT; Van, NT; Van Hung, N; Van Kinh, N; Van Minh Hoang, N; Van My, N; Van Thang, N; Van Thanh, N; Van Vinh Chau, N; Van Xang, N; My, PH; Khoa, PTM; Tam, PTT; Van Lao, P; Van Minh, P; Van Be Bay, P; Rahman, M; Thompson, C; Ngan, TTD; Nhu, TDH; Chau, THM; Toan, TK; Phuc, TM; Hong, TTK; Dung, TTN; Thanh, TTT; Minh, TTT; Nguyen, TT; Hien, TT; Tri, TQ; Hien, VB; Tai, VN; Cuong, VQ; Phat, VV; Huong, VTL; Hang, VTT; Wertheim, H; Bogaardt, C; Brierley, L; Chase-Topping, M; Ivens, A; Lu, L; Rambaut, A; Woolhouse, M; Cotten, M; Oude Munnink, BB; Kellam, P; Phan, MVT; van der Hoek, L; Deijs, M; Jebbink, MF; Farsani, SMJ; Saylors, K; Wolfe, N; (2017) Detection of potentially novel paramyxovirus and coronavirus viral RNA in bats and rats in the Mekong Delta region of southern Viet Nam. Zoonoses and public health. ISSN 1863-1959 DOI: https://doi.org/10.1111/zph.12362

Berto, A; Day, J; Van Vinh Chau, N; Thwaites, GE; My, NN; Baker, S; Darton, TC; (2017) Current challenges and possible solutions to improve access to care and treatment for hepatitis C infection in Vietnam: a systematic review. BMC infectious diseases, 17 (1). p. 260. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2360-6

Bhattacharyya, T; Marlais, T; Miles, MA; (2017) Diagnostic antigens for visceral leishmaniasis: clarification of nomenclatures. Parasites & vectors, 10 (1). p. 178. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-017-2120-x

Blackwell, Grace A; Holt, Kathryn E; Bentley, Stephen D; Hsu, Li Yang; Hall, Ruth M; (2017) Variants of AbGRI3 carrying the armA gene in extensively antibiotic-resistant Acinetobacter baumannii from Singapore. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 72 (4). pp. 1031-1039. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkw542

Blanchet, K; Ramesh, A; Frison, S; Warren, E; Hossain, M; Smith, J; Knight, A; Post, N; Lewis, C; Woodward, A; +5 more... Dahab, M; Ruby, A; Sistenich, V; Pantuliano, S; Roberts, B; (2017) Evidence on public health interventions in humanitarian crises. Lancet. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(16)30768-1

Bokhari, H; Ali, A; Noreen, Z; Thomson, N; Wren, BW; (2017) Galleria mellonella is low cost and suitable surrogate host for studying virulence of human pathogenic Vibrio cholerae. Gene. ISSN 0378-1119 DOI: https://doi.org/10.1016/j.gene.2017.07.019

Bossé, JT; Li, Y; Rogers, J; Fernandez Crespo, R; Li, Y; Chaudhuri, RR; Holden, MT; Maskell, DJ; Tucker, AW; Wren, BW; +2 more... Rycroft, AN; Langford, PR; (2017) Whole Genome Sequencing for Surveillance of Antimicrobial Resistance in Actinobacillus pleuropneumoniae. Frontiers in microbiology, 8. p. 311. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2017.00311

Brand, S; Ko, EJ; Viayna, E; Thompson, S; Spinks, D; Thomas, M; Sandberg, L; Francisco, AF; Jayawardhana, S; Smith, VC; +26 more... Jansen, C; De Rycker, M; Thomas, J; MacLean, L; Osuna-Cabello, M; Riley, J; Scullion, P; Stojanovski, L; Simeons, FRC; Epemolu, O; Shishikura, Y; Crouch, SD; Bakshi, TS; Nixon, CJ; Reid, IH; Hill, AP; Underwood, TZ; Hindley, SJ; Robinson, SA; Kelly, JM; Fiandor, JM; Wyatt, PG; Marco, M; Miles, TJ; Read, KD; Gilbert, IH; (2017) Discovery and Optimization of 5-Amino-1,2,3-triazole-4-carboxamide Series against Trypanosoma cruzi. Journal of medicinal chemistry. ISSN 0022-2623 DOI: https://doi.org/10.1021/acs.jmedchem.7b00463

Bricio-Moreno, L; Ebruke, C; Chaguza, C; Cornick, J; Kwambana-Adams, B; Yang, M; Mackenzie, G; Wren, BW; Everett, D; Antonio, M; +1 more... Kadioglu, A; (2017) Comparative genomic analysis and in vivo modelling of Streptococcus pneumoniae ST3081 and ST618 isolates reveal key genetic and phenotypic differences contributing to clonal replacement of serotype 1 in The Gambia. The Journal of infectious diseases. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jix472

Brockmeier, SL; Loving, CL; Nicholson, TL; Wang, J; Peters, SE; Weinert, L; Chaudhuri, R; Seilly, DJ; Langford, PR; Rycroft, A; +4 more... Wren, BW; Maskell, DJ; Tucker, AW; BRADP1T Consortium; (2017) Use of proteins identified through a functional genomic screen to develop a protein subunit vaccine that provides significant protection against virulent Streptococcus suis in pigs. Infection and immunity. ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.00559-17

Brodrick, HJ; Raven, KE; Kallonen, T; Jamrozy, D; Blane, B; Brown, NM; Martin, V; Török, ME; Parkhill, J; Peacock, SJ; (2017) Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom. Genome medicine, 9 (1). p. 70. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-017-0457-6

Burchett, HE; Leurent, B; Baiden, F; Baltzell, K; Björkman, A; Bruxvoort, K; Clarke, S; DiLiberto, D; Elfving, K; Goodman, C; +15 more... Hopkins, H; Lal, S; Liverani, M; Magnussen, P; Mårtensson, A; Mbacham, W; Mbonye, A; Onwujekwe, O; Roth Allen, D; Shakely, D; Staedke, S; Vestergaard, LS; Whitty, CJ; Wiseman, V; Chandler, CI; (2017) Improving prescribing practices with rapid diagnostic tests (RDTs): synthesis of 10 studies to explore reasons for variation in malaria RDT uptake and adherence. BMJ open, 7 (3). e012973. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2016-012973

C de Oliveira, T; Rodrigues, PT; Menezes, MJ; Gonçalves-Lopes, RM; Bastos, MS; Lima, NF; Barbosa, S; Gerber, AL; Loss de Morais, G; Berná, L; +5 more... Phelan, J; Robello, C; de Vasconcelos, ATR; Alves, JMP; Ferreira, MU; (2017) Genome-wide diversity and differentiation in New World populations of the human malaria parasite Plasmodium vivax. PLoS neglected tropical diseases, 11 (7). e0005824. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005824

Cairns, MD; Preston, MD; Hall, CL; Gerding, DN; Hawkey, PM; Kato, H; Kim, H; Kuijper, EJ; Lawley, TD; Pituch, H; +8 more... Reid, S; Kullin, B; Riley, TV; Solomon, K; Tsai, PJ; Weese, JS; Stabler, RA; Wren, BW; (2017) Correction for Cairns et al., "Comparative Genome Analysis and Global Phylogeny of the Toxin Variant Clostridium difficile PCR Ribotype 017 Reveals the Evolution of Two Independent Sublineages". Journal of clinical microbiology, 55 (6). p. 1971. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.00487-17 Full text not available from this repository.

Campos, MC; Phelan, J; Francisco, AF; Taylor, MC; Lewis, MD; Pain, A; Clark, TG; Kelly, JM; (2017) Genome-wide mutagenesis and multi-drug resistance in American trypanosomes induced by the front-line drug benznidazole. Scientific reports, 7 (1). p. 14407. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-14986-6

Carmel, K; Gundogdu, O; Scates, P; Linton, M; Laurette, P; Stabler, R; Dorrell, N; Wren, WB; Corcionivoschi, N; (2017) The in vitro and in vivo effect of Carvacrol in preventing Campylobacter infection, colonisation and improve chicken broilers productivity. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648033 Full text not available from this repository.

Carrion Martin, AI; Pebody, RG; Danis, K; Ellis, J; Niazi, S; DE Lusignan, S; Brown, KE; Zambon, M; Allen, DJ; (2017) The emergence of enterovirus D68 in England in autumn 2014 and the necessity for reinforcing enterovirus respiratory screening. Epidemiology and infection. pp. 1-10. ISSN 0950-2688 DOI: https://doi.org/10.1017/S0950268817000590

Chewapreecha, C; Holden, MT; Vehkala, M; Välimäki, N; Yang, Z; Harris, SR; Mather, AE; Tuanyok, A; De Smet, B; Le Hello, S; +13 more... Bizet, C; Mayo, M; Wuthiekanun, V; Limmathurotsakul, D; Phetsouvanh, R; Spratt, BG; Corander, J; Keim, P; Dougan, G; Dance, DA; Currie, BJ; Parkhill, J; Peacock, SJ; (2017) Global and regional dissemination and evolution of Burkholderia pseudomallei. Nature microbiology, 2. p. 16263. ISSN 2058-5276 DOI: https://doi.org/10.1038/nmicrobiol.2016.263

Claessens, A; Affara, M; Assefa, SA; Kwiatkowski, DP; Conway, DJ; (2017) Culture adaptation of malaria parasites selects for convergent loss-of-function mutants. Scientific reports, 7. p. 41303. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep41303

Clarke, GM; Rockett, K; Kivinen, K; Hubbart, C; Jeffreys, AE; Rowlands, K; Jallow, M; Conway, DJ; Bojang, KA; Pinder, M; +68 more... Usen, S; Sisay-Joof, F; Sirugo, G; Toure, O; Thera, MA; Konate, S; Sissoko, S; Niangaly, A; Poudiougou, B; Mangano, VD; Bougouma, EC; Sirima, SB; Modiano, D; Amenga-Etego, LN; Ghansah, A; Koram, KA; Wilson, MD; Enimil, A; Evans, J; Amodu, OK; Olaniyan, S; Apinjoh, T; Mugri, R; Ndi, A; Ndila, CM; Uyoga, S; Macharia, A; Peshu, N; Williams, TN; Manjurano, A; Sepúlveda, N; Clark, TG; Riley, E; Drakeley, C; Reyburn, H; Nyirongo, V; Kachala, D; Molyneux, M; Dunstan, SJ; Phu, NH; Quyen, NN; Thai, CQ; Hien, TT; Manning, L; Laman, M; Siba, P; Karunajeewa, H; Allen, S; Allen, A; Davis, TM; Michon, P; Mueller, I; Molloy, SF; Campino, S; Kerasidou, A; Cornelius, VJ; Hart, L; Shah, SS; Band, G; Spencer, CC; Agbenyega, T; Achidi, E; Doumbo, OK; Farrar, J; Marsh, K; Taylor, T; Kwiatkowski, DP; MalariaGEN Consortium; (2017) Characterisation of the opposing effects of G6PD deficiency on cerebral malaria and severe malarial anaemia. eLife, 6. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.15085

Coll, F; Harrison, EM; Toleman, MS; Reuter, S; Raven, KE; Blane, B; Palmer, B; Kappeler, ARM; Brown, NM; Török, ME; +2 more... Parkhill, J; Peacock, SJ; (2017) Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community. Science translational medicine, 9 (413). ISSN 1946-6234 DOI: https://doi.org/10.1126/scitranslmed.aak9745

Collins, CR; Hackett, F; Atid, J; Tan, MSY; Blackman, MJ; (2017) The Plasmodium falciparum pseudoprotease SERA5 regulates the kinetics and efficiency of malaria parasite egress from host erythrocytes. PLoS pathogens, 13 (7). e1006453. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1006453

Cornick, JE; Bishop, OT; Yalcin, F; Kiran, AM; Kumwenda, B; Chaguza, C; Govindpershad, S; Ousmane, S; Senghore, M; du Plessis, M; +15 more... Pluschke, G; Ebruke, C; McGee, L; Sigauque, B; Collard, JM; Bentley, SD; Kadioglu, A; Antonio, M; von Gottberg, A; French, N; Klugman, KP; Heyderman, RS; Alderson, M; Everett, DB; Consortium, PA; (2017) The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1. Vaccine, 35 (6). pp. 972-980. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.12.037

Cortes, T; Schubert, OT; Banaei-Esfahani, A; Collins, BC; Aebersold, R; Young, DB; (2017) Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survival. Scientific reports, 7 (1). p. 8208. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-08306-1

Darton, Thomas C; Meiring, James E; Tonks, Susan; Khan, Md Arifuzzaman; Khanam, Farhana; Shakya, Mila; Thindwa, Deus; Baker, Stephen; Basnyat, Buddha; Clemens, John D; +10 more... Dougan, Gordon; Dolecek, Christiane; Dunstan, Sarah J; Gordon, Melita A; Heyderman, Robert S; Holt, Kathryn E; Pitzer, Virginia E; Qadri, Firdausi; Zaman, K; Pollard, Andrew J; (2017) The STRATAA study protocol: a programme to assess the burden of enteric fever in Bangladesh, Malawi and Nepal using prospective population census, passive surveillance, serological studies and healthcare utilisation surveys. BMJ OPEN, 7 (6). ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2017-016283

Davies, C; Taylor, A; Gundogdu, O; Wren, WB; Elmi, A; Kelly, D; Dorrell, N; (2017) Investigating the biogenesis of Campylobacter jejuni outer membrane vesicle production. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648039 Full text not available from this repository.

Davies, HM; Nofal, SD; McLaughlin, EJ; Osborne, AR; (2017) Repetitive sequences in malaria parasite proteins. FEMS microbiology reviews. ISSN 0168-6445 DOI: https://doi.org/10.1093/femsre/fux046 Full text not available from this repository.

Dheda, K; Gumbo, T; Maartens, G; Dooley, KE; McNerney, R; Murray, M; Furin, J; Nardell, EA; London, L; Lessem, E; +32 more... Theron, G; van Helden, P; Niemann, S; Merker, M; Dowdy, D; Van Rie, A; Siu, GK; Pasipanodya, JG; Rodrigues, C; Clark, TG; Sirgel, FA; Esmail, A; Lin, HH; Atre, SR; Schaaf, HS; Chang, KC; Lange, C; Nahid, P; Udwadia, ZF; Horsburgh, CRJr; Churchyard, GJ; Menzies, D; Hesseling, AC; Nuermberger, E; McIlleron, H; Fennelly, KP; Goemaere, E; Jaramillo, E; Low, M; Jara, CM; Padayatchi, N; Warren, RM; (2017) The epidemiology, pathogenesis, transmission, diagnosis, and management of multidrug-resistant, extensively drug-resistant, and incurable tuberculosis. The lancet Respiratory medicine. ISSN 2213-2600 DOI: https://doi.org/10.1016/S2213-2600(17)30079-6 Full text not available from this repository.

Dheda, K; Limberis, JD; Pietersen, E; Phelan, J; Esmail, A; Lesosky, M; Fennelly, KP; Te Riele, J; Mastrapa, B; Streicher, EM; +13 more... Dolby, T; Abdallah, AM; Ben-Rached, F; Simpson, J; Smith, L; Gumbo, T; van Helden, P; Sirgel, FA; McNerney, R; Theron, G; Pain, A; Clark, TG; Warren, RM; (2017) Outcomes, infectiousness, and transmission dynamics of patients with extensively drug-resistant tuberculosis and home-discharged patients with programmatically incurable tuberculosis: a prospective cohort study. The lancet Respiratory medicine, 5 (4). pp. 269-281. ISSN 2213-2600 DOI: https://doi.org/10.1016/S2213-2600(16)30433-7 Full text not available from this repository.

Diez Benavente, E; Florez de Sessions, P; Moon, RW; Holder, AA; Blackman, MJ; Roper, C; Drakeley, CJ; Pain, A; Sutherland, CJ; Hibberd, ML; +2 more... Campino, S; Clark, TG; (2017) Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. PLoS genetics, 13 (9). e1007008. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1007008

Diez Benavente, E; Ward, Z; Chan, W; Mohareb, FR; Sutherland, CJ; Roper, C; Campino, S; Clark, TG; (2017) Genomic variation in Plasmodium vivax malaria reveals regions under selective pressure. PloS one, 12 (5). e0177134. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0177134

Divis, P; (2017) Population genetic structure and genomic divergence in Plasmodium knowlesi. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04398418

Divis, PC; Lin, LC; Rovie-Ryan, JJ; Kadir, KA; Anderios, F; Hisam, S; Sharma, RS; Singh, B; Conway, DJ; (2017) Three Divergent Subpopulations of the Malaria Parasite Plasmodium knowlesi. Emerging infectious diseases, 23 (4). pp. 616-624. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2304.161738

Do, LAH; Pellet, J; van Doorn, HR; Tran, AT; Nguyen, BH; Tran, TTL; Tran, QH; Vo, QB; Tran Dac, NA; Trinh, HN; +18 more... Nguyen, TTH; Le Binh, BT; Nguyen, HMK; Nguyen, MT; Thai, QT; Vo, TV; Ngo, NQM; Dang, TKH; Cao, NH; Tran, TV; Ho, LV; De Meulder, B; Auffray, C; Hofstra, JJ; Farrar, J; Bryant, JE; de Jong, M; Hibberd, ML; (2017) Host Transcription Profile In Nasal Epithelium And Whole Blood of Hospitalised Children under two years of age with Respiratory Syncytial Virus Infection. The Journal of infectious diseases. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jix519

Dombrowski, JG; Souza, RM; Curry, J; Hinton, L; Silva, NRM; Grignard, L; Gonçalves, LA; Gomes, AR; Epiphanio, S; Drakeley, C; +4 more... Huggett, J; Clark, TG; Campino, S; Marinho, CRF; (2017) G6PD deficiency alleles in a malaria-endemic region in the Western Brazilian Amazon. Malaria journal, 16 (1). p. 253. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-017-1889-6

Domman, D; Quilici, ML; Dorman, MJ; Njamkepo, E; Mutreja, A; Mather, AE; Delgado, G; Morales-Espinosa, R; Grimont, PAD; Lizárraga-Partida, ML; +10 more... Bouchier, C; Aanensen, DM; Kuri-Morales, P; Tarr, CL; Dougan, G; Parkhill, J; Campos, J; Cravioto, A; Weill, FX; Thomson, NR; (2017) Integrated view of Vibrio cholerae in the Americas. Science (New York, NY), 358 (6364). pp. 789-793. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.aao2136 Full text not available from this repository.

Duffy, CW; Ba, H; Assefa, S; Ahouidi, AD; Deh, YB; Tandia, A; Kirsebom, FC; Kwiatkowski, DP; Conway, DJ; (2017) Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution. Molecular ecology. ISSN 0962-1083 DOI: https://doi.org/10.1111/mec.14066

Dung, TTN; Duy, PT; Sessions, OM; Sangumathi, UK; Phat, VV; Tam, PTT; To, NTN; Phuc, TM; Hong Chau, TT; Chau, NNM; +4 more... Minh, NN; Thwaites, GE; Rabaa, MA; Baker, S; (2017) A universal genome sequencing method for rotavirus A from human fecal samples which identifies segment reassortment and multi-genotype mixed infection. BMC genomics, 18 (1). p. 324. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-3714-6

Dyson, ZA; Thanh, DP; Bodhidatta, L; Mason, CJ; Srijan, A; Rabaa, MA; Vinh, PV; Thanh, TH; Thwaites, GE; Baker, S; +1 more... Holt, KE; (2017) Whole Genome Sequence Analysis of Salmonella Typhi Isolated in Thailand before and after the Introduction of a National Immunization Program. PLoS neglected tropical diseases, 11 (1). e0005274. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005274

di Sario, G; Gundogdu, O; Hussein, M; Wren, WB; Canonico, B; Papa, S; Elmi, A; Dorrell, N; (2017) Investigating Campylobacter jejuni interactions with endoplasmic reticulum in intestinal epithelial cells resulting in induction of the unfolded protein response. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648022 Full text not available from this repository.

Elmi, A; Dorey, A; Watson, E; Jagatia, H; Gundogdu, O; Bajaj-Elliott, M; Wren, WB; Smith, DGE; Dorrell, N; (2017) The bile salt sodium taurocholate induces Campylobacter jejuni outer membrane vesicle production and increases OMV-associated proteolytic activity. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648047 Full text not available from this repository.

Elmi, A; Dorey, A; Watson, E; Jagatia, H; Inglis, NF; Gundogdu, O; Bajaj-Elliott, M; Wren, BW; Smith, DGE; Dorrell, N; (2017) The bile salt sodium taurocholate induces Campylobacter jejuni outer membrane vesicle production and increases OMV-associated proteolytic activity. Cellular microbiology. ISSN 1462-5814 DOI: https://doi.org/10.1111/cmi.12814

Esson, D; Gupta, S; Bailey, D; Wigley, P; Wedley, A; Mather, AE; Méric, G; Mastroeni, P; Sheppard, SK; Thomson, NR; +4 more... Parkhill, J; Maskell, DJ; Christie, G; Grant, AJ; (2017) Identification and initial characterisation of a protein involved in Campylobacter jejuni cell shape. Microbial pathogenesis. ISSN 0882-4010 DOI: https://doi.org/10.1016/j.micpath.2017.01.042

Fajardo, T; Sung, PY; Celma, CC; Roy, P; (2017) Rotavirus Genomic RNA Complex Forms via Specific RNA-RNA Interactions: Disruption of RNA Complex Inhibits Virus Infectivity. Viruses, 9 (7). ISSN 1999-4915 DOI: https://doi.org/10.3390/v9070167

Fookes, MC; Hadfield, J; Harris, S; Parmar, S; Unemo, M; Jensen, JS; Thomson, NR; (2017) Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure. BMC genomics, 18 (1). p. 993. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4399-6

Fougere, Aurelie; Jackson, Andrew P; Bechtsi, Dafni Paraskevi; Braks, Joanna AM; Annoura, Takeshi; Fonager, Jannik; Spaccapelo, Roberta; Ramesar, Jai; Chevalley-Maurel, Severine; Klop, Onny; +10 more... van der Laan, Annelies MA; Tanke, Hans J; Kocken, Clemens HM; Pasini, Erica M; Khan, Shahid M; Bohme, Ulrike; van Ooij, Christiaan; Otto, Thomas D; Janse, Chris J; Franke-Fayard, Blandine; (2017) Variant Exported Blood-Stage Proteins Encoded by Plasmodium Multigene Families Are Expressed in Liver Stages Where They Are Exported into the Parasitophorous Vacuole (vol 12, e1005917, 2016). PLOS PATHOGENS, 13 (1). ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1006128

Francisco, AF; Jayawardhana, S; Lewis, MD; Taylor, MC; Kelly, JM; (2017) Biological factors that impinge on Chagas disease drug development. Parasitology. pp. 1-10. ISSN 0031-1820 DOI: https://doi.org/10.1017/S0031182017001469

Furnham, N; (2017) Complementary Sources of Protein Functional Information: The Far Side of GO. In: UNSPECIFIED, (ed.) The Gene Ontology Handbook. Humana Press, pp. 263-274. ISBN 1940-6029 DOI: https://doi.org/10.1007/978-1-4939-3743-1_19

Ganter, M; Goldberg, JM; Dvorin, JD; Paulo, JA; King, JG; Tripathi, AK; Paul, AS; Yang, J; Coppens, I; Jiang, RH; +5 more... Elsworth, B; Baker, DA; Dinglasan, RR; Gygi, SP; Duraisingh, MT; (2017) Plasmodium falciparum CRK4 directs continuous rounds of DNA replication during schizogony. Nature microbiology, 2. p. 17017. ISSN 2058-5276 DOI: https://doi.org/10.1038/nmicrobiol.2017.17

Garrine, Marcelino; Mandomando, Inacio; Vubil, Delfino; Nhampossa, Tacilta; Acacio, Sozinho; Li, Shan; Paulson, Joseph N; Almeida, Mathieu; Domman, Daryl; Thomson, Nicholas R; +2 more... Alonso, Pedro; Stine, Oscar Colin; (2017) Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing. PLOS NEGLECTED TROPICAL DISEASES, 11 (6). ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0005671

Gentekaki, E; Curtis, BA; Stairs, CW; Klimeš, V; Eliáš, M; Salas-Leiva, DE; Herman, EK; Eme, L; Arias, MC; Henrissat, B; +16 more... Hilliou, F; Klute, MJ; Suga, H; Malik, SB; Pightling, AW; Kolisko, M; Rachubinski, RA; Schlacht, A; Soanes, DM; Tsaousis, AD; Archibald, JM; Ball, SG; Dacks, JB; Clark, CG; van der Giezen, M; Roger, AJ; (2017) Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis. PLoS biology, 15 (9). e2003769. ISSN 1544-9173 DOI: https://doi.org/10.1371/journal.pbio.2003769

Goheen, MM; Campino, S; Cerami, C; (2017) The role of the red blood cell in host defence against falciparum malaria: an expanding repertoire of evolutionary alterations. British journal of haematology. ISSN 0007-1048 DOI: https://doi.org/10.1111/bjh.14886 Full text not available from this repository.

Gomes, AR; Ravenhall, M; Benavente, ED; Talman, A; Sutherland, C; Roper, C; Clark, TG; Campino, S; (2017) Corrigendum to "Genetic diversity of next generation antimalarial targets: A baseline for drug resistance surveillance programmes" [Int. J. Parasitol. Drugs and Drug Resist. 7 (2017) 174-180]. International journal for parasitology Drugs and drug resistance. ISSN 2211-3207 DOI: https://doi.org/10.1016/j.ijpddr.2017.11.001

Gomes, AR; Ravenhall, M; Benavente, ED; Talman, A; Sutherland, C; Roper, C; Clark, TG; Campino, S; (2017) Genetic diversity of next generation antimalarial targets: A baseline for drug resistance surveillance programmes. International journal for parasitology Drugs and drug resistance, 7 (2). pp. 174-180. ISSN 2211-3207 DOI: https://doi.org/10.1016/j.ijpddr.2017.03.001

Gorrie, Claire L; Mirceta, Mirjana; Wick, Ryan R; Edwards, David J; Thomson, Nicholas R; Strugnell, Richard A; Pratt, Nigel F; Garlick, Jill S; Watson, Kerri M; Pilcher, David V; +4 more... McGloughlin, Steve A; Spelman, Denis W; Jenney, Adam WJ; Holt, Kathryn E; (2017) Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients. CLINICAL INFECTIOUS DISEASES, 65 (2). pp. 208-215. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix270

Gorrie, Claire; Mirceta, Mirjana; Wick, Ryan; Judd, Louise; Wyres, Kelly; Thomson, Nicholas; Strugnell, Richard; Pratt, Nigel; Garlick, Jill; Watson, Kerrie; +5 more... Hunter, Peter; McGloughlin, Steve; Spelman, Denis; Jenney, Adam; Holt, Kathryn; (2017) Antimicrobial resistant Klebsiella pneumoniae carriage and infection in specialized geriatric care wards linked to acquisition in the referring hospital. BiorXiv. DOI: https://doi.org/10.1101/218461

Grandjean, L; Gilman, RH; Iwamoto, T; Köser, CU; Coronel, J; Zimic, M; Török, ME; Ayabina, D; Kendall, M; Fraser, C; +5 more... Harris, S; Parkhill, J; Peacock, SJ; Moore, DAJ; Colijn, C; (2017) Convergent evolution and topologically disruptive polymorphisms among multidrug-resistant tuberculosis in Peru. PloS one, 12 (12). e0189838. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0189838

Gundogdu, O; Teixeira da Silva, D; Mohammad, B; Elmi, A; Wren, WB; van Vliet, A; Dorrell, N; (2017) The Campylobacter jejuni oxidative stress regulator RrpB is associated with a genomic hypervariable region and altered oxidative stress resistance. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648056 Full text not available from this repository.

Göhler, A; Trung, TT; Hopf, V; Kohler, C; Hartleib, J; Wuthiekanun, V; Peacock, SJ; Limmathurotsakul, D; Tuanyok, A; Steinmetz, I; (2017) Multitarget Quantitative PCR Improves Detection and Predicts Cultivability of the Pathogen Burkholderia pseudomallei. Applied and environmental microbiology, 83 (8). ISSN 0099-2240 DOI: https://doi.org/10.1128/AEM.03212-16

Hadfield, J; Bénard, A; Domman, D; Thomson, N; (2017) The Hidden Genomics of Chlamydia trachomatis. Current topics in microbiology and immunology. ISSN 0070-217X DOI: https://doi.org/10.1007/82_2017_39 Full text not available from this repository.

Hadfield, J; Harris, SR; Seth-Smith, HMB; Parmar, S; Andersson, P; Giffard, PM; Schachter, J; Moncada, J; Ellison, L; Vaulet, MLG; +28 more... Fermepin, MR; Radebe, F; Mendoza, S; Ouburg, S; Morré, SA; Sachse, K; Puolakkainen, M; Korhonen, SJ; Sonnex, C; Wiggins, R; Jalal, H; Brunelli, T; Casprini, P; Pitt, R; Ison, C; Savicheva, A; Shipitsyna, E; Hadad, R; Kari, L; Burton, MJ; Mabey, D; Solomon, AW; Lewis, D; Marsh, P; Unemo, M; Clarke, IN; Parkhill, J; Thomson, NR; (2017) Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome research. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.212647.116

Hale, VL; Watermeyer, JM; Hackett, F; Vizcay-Barrena, G; van Ooij, C; Thomas, JA; Spink, MC; Harkiolaki, M; Duke, E; Fleck, RA; +2 more... Blackman, MJ; Saibil, HR; (2017) Parasitophorous vacuole poration precedes its rupture and rapid host erythrocyte cytoskeleton collapse in Plasmodium falciparum egress. Proceedings of the National Academy of Sciences of the United States of America. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1619441114

Harrison, EM; Coll, F; Toleman, MS; Blane, B; Brown, NM; Török, ME; Parkhill, J; Peacock, SJ; (2017) Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England. Scientific reports, 7 (1). p. 7406. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-07662-2

Haycock, Philip C; Burgess, Stephen; Nounu, Aayah; Zheng, Jie; Okoli, George N; Bowden, Jack; Wade, Kaitlin Hazel; Timpson, Nicholas J; Evans, David M; Willeit, Peter; +188 more... Aviv, Abraham; Gaunt, Tomr; Hemani, Gibran; Mangino, Massimo; Ellis, Hayley Patricia; Kurian, Kathreena M; Pooley, Karen A; Eeles, Rosalind A; Lee, Jeffrey E; Fang, Shenying; Chen, Wei V; Law, Matthew H; Bowdler, Lisa M; Iles, Mark M; Yang, Qiong; Worrall, Bradford B; Markus, Hugh Stephen; Hung, Rayjean J; Amos, Chris I; Spurdle, Amanda B; Thompson, Deborah J; O'Mara, Tracy A; Wolpin, Brian; Amundadottir, Laufey; Stolzenberg-Solomon, Rachael; Trichopoulou, Antonia; Onland-Moret, Charlotte; Lund, Eiliv; Duell, Eric J; Canzian, Federico; Severi, Gianluca; Overvad, Kim; Gunter, Marc J; Tumino, Rosario; Svenson, Ulrika; van Rij, Andre; Baas, Annette F; Bown, Matthew J; Samani, Nilesh J; van t'Hof, Femke NG; Tromp, Gerard; Jones, Gregory T; Kuivaniemi, Helena; Elmore, James R; Johansson, Mattias; Mckay, James; Scelo, Ghislaine; carreras-Torres, Robert; Gaborieau, Valerie; Brennan, Paul; Bracci, Paige M; Neale, Rachel E; Olson, Sara H; Gallinger, Steven; Li, Donghui; Petersen, Gloria M; Risch, Harvey A; Klein, Alison P; Han, Jiali; Abnet, Christian C; Freedman, Neal D; Taylor, Philip R; Maris, John M; Aben, Katja K; Kiemeney, Lambertus A; Vermeulen, Sita H; Wiencke, John K; Walsh, Kyle M; Wrensch, Margaret; Rice, Terri; Turnbull, Clare; Litchfield, Kevin; Paternoster, Lavinia; Standl, Marie; Abecasis, Goncalo R; SanGiovanni, John Paul; Li, Yong; Mijatovic, Vladan; Sapkota, Yadav; Low, Siew-Kee; Zondervan, Krina T; Montgomery, Grant W; Nyholt, Dale R; van Heel, David A; Hunt, Karen; Arking, Dan E; Ashar, Foram N; Sotoodehnia, Nona; Woo, Daniel; Rosand, Jonathan; Comeau, Mary E; Brown, W Mark; Silverman, Edwin K; Hokanson, John E; Cho, Michael H; Hui, Jennie; Ferreira, Manuel A; Thompson, Philip J; Morrison, Alanna C; Felix, Janine F; Smith, Nicholas L; Christiano, Angela M; Petukhova, Lynn; Betz, Regina C; Fan, Xing; Zhang, Xuejun; Zhu, Caihong; Langefeld, Carl D; Thompson, Susan D; Wang, Feijie; Lin, Xu; Schwartz, David A; Fingerlin, Tasha; Rotter, Jerome I; Cotch, Mary Frances; Jensen, Richard A; Munz, Matthias; Dommisch, Henrik; Schaefer, Arne S; Han, Fang; Ollila, Hanna M; Hillary, Ryan P; Albagha, Omar; Ralston, Stuart H; Zeng, Chenjie; Zheng, Wei; Shu, Xiao-Ou; Reis, Andre; Uebe, Steffen; Hueffmeier, Ulrike; Kawamura, Yoshiya; Otowa, Takeshi; Sasaki, Tsukasa; Hibberd, Martin Lloyd; Davila, Sonia; Xie, Gang; Siminovitch, Katherine; Bei, Jin-Xin; Zeng, Yi-Xin; Foersti, Asta; Chen, Bowang; Landi, Stefano; Franke, Andre; Fischer, Annegret; Ellinghaus, David; Flores, Carlos; Noth, Imre; Ma, Shwu-Fan; Foo, Jia Nee; Liu, Jianjun; Kim, Jong-Won; Cox, David G; Delattre, Olivier; Mirabeau, Olivier; Skibola, Christine F; Tang, Clara S; Garcia-Barcelo, Merce; Chang, Kai-Ping; Su, Wen-Hui; Chang, Yu-Sun; Martin, Nicholas G; Gordon, Scott; Wade, Tracey D; Lee, Chaeyoung; Kubo, Michiaki; Cha, Pei-Chieng; Nakamura, Yusuke; Levy, Daniel; Kimura, Masayuki; Hwang, Shih-Jen; Hunt, Steven; Spector, Tim; Soranzo, Nicole; Manichaikul, Aniw; Barr, Graham; Kahali, Bratati; Speliotes, Elizabeth; Yerges-Armstrong, LauraM; Cheng, Ching-Yu; Jonas, Jost B; Wong, Tien Yin; Fogh, Isabella; Lin, Kuang; Powell, John F; Rice, Kenneth; Relton, Caroline L; Martin, Richard M; Smith, George Davey; (2017) Association Between Telomere Length and Risk of Cancer and Non-Neoplastic Diseases: A Mendelian Randomization Study. JAMA ONCOLOGY, 3 (5). pp. 636-651. ISSN 2374-2437 DOI: https://doi.org/10.1001/jamaoncol.2016.5945

Heinson, AI; Gunawardana, Y; Moesker, B; Hume, CC; Vataga, E; Hall, Y; Stylianou, E; McShane, H; Williams, A; Niranjan, M; +1 more... Woelk, CH; (2017) Enhancing the Biological Relevance of Machine Learning Classifiers for Reverse Vaccinology. International journal of molecular sciences, 18 (2). ISSN 1422-0067 DOI: https://doi.org/10.3390/ijms18020312

Henson, SP; Boinett, CJ; Ellington, MJ; Kagia, N; Mwarumba, S; Nyongesa, S; Mturi, N; Kariuki, S; Scott, JAG; Thomson, NR; +1 more... Morpeth, SC; (2017) Molecular epidemiology of Klebsiella pneumoniae invasive infections over a decade at Kilifi County Hospital in Kenya. International journal of medical microbiology, 307 (7). pp. 422-429. ISSN 1438-4221 DOI: https://doi.org/10.1016/j.ijmm.2017.07.006

Hernandez-Garcia, J; Wang, J; Restif, O; Holmes, MA; Mather, AE; Weinert, LA; Wileman, TM; Thomson, JR; Langford, PR; Wren, BW; +4 more... Rycroft, A; Maskell, DJ; Tucker, AW; BRADP1T Consortium; (2017) Patterns of antimicrobial resistance in Streptococcus suis isolates from pigs with or without streptococcal disease in England between 2009 and 2014. Veterinary microbiology, 207. pp. 117-124. ISSN 0378-1135 DOI: https://doi.org/10.1016/j.vetmic.2017.06.002

Heyckendorf, J; Andres, S; Köser, CU; Olaru, ID; Schön, T; Sturegård, E; Beckert, P; Schleusener, V; Kohl, TA; Hillemann, D; +6 more... Moradigaravand, D; Parkhill, J; Peacock, SJ; Niemann, S; Lange, C; Merker, M; (2017) What is resistance? Impact of phenotypic versus molecular drug resistance testing on multi- and extensively drug-resistant tuberculosis therapy. Antimicrobial agents and chemotherapy. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.01550-17

Holmes, CW; Rahman, S; Allen, DJ; Bandi, S; Tang, JW; (2017) Human parechovirus cluster in the UK, 8 May-2 August 2016-sequence analysis. Journal of clinical virology, 93. pp. 37-39. ISSN 1386-6532 DOI: https://doi.org/10.1016/j.jcv.2017.05.018

Howell, KJ; Weinert, LA; Peters, SE; Wang, J; Hernandez-Garcia, J; Chaudhuri, RR; Luan, SL; Angen, Ø; Aragon, V; Williamson, SM; +6 more... Langford, PR; Rycroft, AN; Wren, BW; Maskell, DJ; Tucker, AW; BRADP1T Consortium; (2017) A "pathotyping" multiplex PCR for Haemophilus parasuis: a tool for the prediction of virulence. Journal of clinical microbiology. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.02464-16

Hussein, M; Naz, N; Gundogdu, O; Wren, WB; Elmi, A; Dorrell, N; (2017) Further investigation of the roles of fibronectin-binding proteins CadF and FlpA during Campylobacter jejuni interactions with intestinal epithelial cells. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648029 Full text not available from this repository.

Iguchi, Atsushi; von Mentzer, Astrid; Kikuchi, Taisei; Thomson, Nicholas R; (2017) An untypeable enterotoxigenic Escherichia coli represents one of the dominant types causing human disease. MICROBIAL GENOMICS, 3 (9). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000121

Inns, T; Pulawska-Czub, A; Harris, JP; Vivancos, R; Read, JM; Beeching, NJ; Allen, DJ; Iturriza-Gomara, M; O'Brien, SJ; (2017) Prospective cohort study to investigate the burden and transmission of acute gastroenteritis in care homes: a study protocol. BMJ open, 7 (11). e018867. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2017-018867

Jamrozy, D; Coll, F; Mather, AE; Harris, SR; Harrison, EM; MacGowan, A; Karas, A; Elston, T; Estée Török, M; Parkhill, J; +1 more... Peacock, SJ; (2017) Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events. BMC genomics, 18 (1). p. 684. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4065-z

Jiang, L; Lee, VJ; Cui, L; Lin, R; Tan, CL; Tan, LW; Lim, WY; Leo, YS; Low, L; Hibberd, M; +1 more... Chen, MI; (2017) Detection of viral respiratory pathogens in mild and severe acute respiratory infections in Singapore. Scientific reports, 7. p. 42963. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep42963

Johnson, R; Byrne, A; Berger, CN; Klemm, E; Crepin, VF; Dougan, G; Frankel, G; (2017) The Type III Secretion System Effector SptP of Salmonella enterica Serovar Typhi. Journal of bacteriology, 199 (4). ISSN 0021-9193 DOI: https://doi.org/10.1128/JB.00647-16

Johnson, R; Ravenhall, M; Pickard, D; Dougan, G; Byrne, A; Frankel, G; (2017) Comparison of Salmonella enterica serovars Typhi and Typhimurium reveals typhoidal-specific responses to bile. Infection and immunity. ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.00490-17

Jovel, IT; Björkman, A; Roper, C; Mårtensson, A; Ursing, J; (2017) Unexpected selections of Plasmodium falciparum polymorphisms in previously treatment-naïve areas after monthly presumptive administration of three different anti-malarial drugs in Liberia 1976-78. Malaria journal, 16 (1). p. 113. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-017-1747-6

Kallonen, T; Brodrick, HJ; Harris, SR; Corander, J; Brown, NM; Martin, V; Peacock, SJ; Parkhill, J; (2017) Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131. Genome research. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.216606.116

Kanji, A; Hasan, R; Ali, A; Zaver, A; Zhang, Y; Imtiaz, K; Shi, W; Clark, TG; McNerney, R; Phelan, J; +3 more... Rao, S; Shafiq, S; Hasan, Z; (2017) Single nucleotide polymorphisms in efflux pumps genes in extensively drug resistant Mycobacterium tuberculosis isolates from Pakistan. Tuberculosis (Edinburgh, Scotland), 107 (Supple). pp. 20-30. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2017.07.012 Full text not available from this repository.

Kanji, A; Hasan, R; Ali, A; Zaver, A; Zhang, Y; Imtiaz, K; Shi, W; Clark, TG; McNerney, R; Phelan, J; +3 more... Rao, S; Shafiq, S; Hasan, Z; (2017) Single nucleotide polymorphisms in efflux pumps genes in extensively drug resistant Mycobacterium tuberculosis isolates from Pakistan. Tuberculosis (Edinburgh, Scotland), 107. pp. 20-30. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2017.07.012

Kazakos, EI; Dorrell, N; Polyzos, SA; Deretzi, G; Kountouras, J; (2017) Comment on "Effect of biofilm formation by clinical isolates of Helicobacter pylori on the efflux-mediated resistance to commonly used antibiotics". World journal of gastroenterology, 23 (33). pp. 6194-6196. ISSN 1007-9327 DOI: https://doi.org/10.3748/wjg.v23.i33.6194

Kelly, C; Gundogdu, O; Pircalabioru, G; Cean, A; Scates, P; Linton, M; Pinkerton, L; Magowan, E; Stef, L; Simiz, E; +6 more... Pet, I; Stewart, S; Stabler, R; Wren, B; Dorrell, N; Corcionivoschi, N; (2017) The In Vitro and In Vivo Effect of Carvacrol in Preventing Campylobacter Infection, Colonization and in Improving Productivity of Chicken Broilers. Foodborne pathogens and disease. ISSN 1535-3141 DOI: https://doi.org/10.1089/fpd.2016.2265

Kim, J; Shimizu, C; Kingsmore, SF; Veeraraghavan, N; Levy, E; Ribeiro Dos Santos, AM; Yang, H; Flatley, J; Hoang, LT; Hibberd, ML; +4 more... Tremoulet, AH; Harismendy, O; Ohno-Machado, L; Burns, JC; (2017) Whole genome sequencing of an African American family highlights toll like receptor 6 variants in Kawasaki disease susceptibility. PloS one, 12 (2). e0170977. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0170977

Knetsch, CW; Kumar, N; Forster, SC; Connor, TR; Browne, HP; Harmanus, C; Sanders, IM; Harris, SR; Turner, L; Morris, T; +13 more... Perry, M; Miyajima, F; Roberts, P; Pirmohamed, M; Songer, JG; Weese, JS; Indra, A; Corver, J; Rupnik, M; Wren, BW; Riley, TV; Kuijper, EJ; Lawley, TD; (2017) Zoonotic transfer of Clostridium difficile harboring antimicrobial resistance between farm animals and humans. Journal of clinical microbiology. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01384-17

Knuepfer, Ellen; Napiorkowska, Marta; van Ooij, Christiaan; Holder, Anthony A; (2017) Generating conditional gene knockouts in Plasmodium - a toolkit to produce stable DiCre recombinase-expressing parasite lines using CRISPR/Cas9. SCIENTIFIC REPORTS, 7 (1). ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-03984-3

Kwambana-Adams, B; Hanson, B; Worwui, A; Agbla, S; Foster-Nyarko, E; Ceesay, F; Ebruke, C; Egere, U; Zhou, Y; Ndukum, M; +5 more... Sodergren, E; Barer, M; Adegbola, R; Weinstock, G; Antonio, M; (2017) Rapid replacement by non-vaccine pneumococcal serotypes may mitigate the impact of the pneumococcal conjugate vaccine on nasopharyngeal bacterial ecology. Scientific reports, 7 (1). p. 8127. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-08717-0

Lacerda, EM; Bowman, EW; Cliff, JM; Kingdon, CC; King, EC; Lee, JS; Clark, TG; Dockrell, HM; Riley, EM; Curran, H; +1 more... Nacul, L; (2017) The UK ME/CFS Biobank for biomedical research on Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) and Multiple Sclerosis. Open J Bioresour, 4. ISSN 2056-5542 DOI: https://doi.org/10.5334/ojb.28

Last, Anna; Pickering, Harry; Roberts, Chrissy; Coll, Francesc; Phelan, Jody; Burr, Sarah; Cassama, Eunice; Nabicassa, Meno; Seth-Smith, Helena; Hadfield, James; +7 more... Cutliffe, Leslie; Clarke, Ian; Mabey, David; Bailey, Robin; Clark, Taane; Thomson, Nick; Holland, Martin; (2017) Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity. BioRxiv. DOI: https://doi.org/10.1101/205336

Leffler, EM; Band, G; Busby, GBJ; Kivinen, K; Le, QS; Clarke, GM; Bojang, KA; Conway, DJ; Jallow, M; Sisay-Joof, F; +31 more... Bougouma, EC; Mangano, VD; Modiano, D; Sirima, SB; Achidi, E; Apinjoh, TO; Marsh, K; Ndila, CM; Peshu, N; Williams, TN; Drakeley, C; Manjurano, A; Reyburn, H; Riley, E; Kachala, D; Molyneux, M; Nyirongo, V; Taylor, T; Thornton, N; Tilley, L; Grimsley, S; Drury, E; Stalker, J; Cornelius, V; Hubbart, C; Jeffreys, AE; Rowlands, K; Rockett, KA; Spencer, CCA; Kwiatkowski, DP; Malaria Genomic Epidemiology Network; (2017) Resistance to malaria through structural variation of red blood cell invasion receptors. Science (New York, NY). ISSN 0036-8075 DOI: https://doi.org/10.1126/science.aam6393

Liaw, J; Hachani, A; Wren, WB; Gundogdu, O; Dorrell, N; (2017) Investigation of the role of Campylobacter jejuni Type VI secretion system in secretion of effectors and interactions with host cells. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648024 Full text not available from this repository.

Louradour, I; Monteiro, CC; Inbar, E; Ghosh, K; Merkhofer, R; Lawyer, P; Paun, A; Smelkinson, M; Secundino, N; Lewis, M; +3 more... Erram, D; Zurek, L; Sacks, D; (2017) The midgut microbiota plays an essential role in sand fly vector competence for Leishmania major. Cellular microbiology, 19 (10). ISSN 1462-5814 DOI: https://doi.org/10.1111/cmi.12755 Full text not available from this repository.

Low, MSF; Tan, H; Hartman, M; Tam, CC; Hoo, C; Lim, J; Chiow, S; Lee, S; Thng, R; Cai, M; +2 more... Tan, Y; Lock, J; (2017) Parental perceptions of childhood seasonal influenza vaccination in Singapore: A cross-sectional survey. Vaccine. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2017.09.060

Loza, A; Talaga, A; Herbas, G; Canaviri, RJ; Cahuasiri, T; Luck, L; Guibarra, A; Goncalves, R; Pereira, JA; Gomez, SA; +4 more... Picado, A; Messenger, LA; Bern, C; Courtenay, O; (2017) Systemic insecticide treatment of the canine reservoir of Trypanosoma cruzi induces high levels of lethality in Triatoma infestans, a principal vector of Chagas disease. Parasites & vectors, 10 (1). p. 344. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-017-2278-2

Ludden, C; Reuter, S; Judge, K; Gouliouris, T; Blane, B; Coll, F; Naydenova, P; Hunt, M; Tracey, A; Hopkins, KL; +4 more... Brown, NM; Woodford, N; Parkhill, J; Peacock, SJ; (2017) Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing. Microbial genomics, 3 (7). e000114. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000114

Lulla, V; Losada, A; Lecollinet, S; Kerviel, A; Lilin, T; Sailleau, C; Beck, C; Zientara, S; Roy, P; (2017) Protective efficacy of multivalent replication-abortive vaccine strains in horses against African horse sickness virus challenge. Vaccine, 35 (33). pp. 4262-4269. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2017.06.023

Lynch, CA; Pearce, R; Pota, H; Egwang, C; Egwang, T; Bhasin, A; Cox, J; Abeku, TA; Roper, C; (2017) Travel and the emergence of high-level drug resistance in Plasmodium falciparum in southwest Uganda: results from a population-based study. Malaria journal, 16 (1). p. 150. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-017-1812-1

Macdonald, SE; Gundogdu, O; Dorrell, N; Wren, BW; Blake, D; Stabler, R; (2017) Draft Genome Sequence of Campylobacter jejuni 11168H. The Onderstepoort journal of veterinary research, 5 (5). ISSN 0030-2465 DOI: https://doi.org/10.1128/genomeA.01556-16

Macdonald, SE; Nolan, MJ; Harman, K; Boulton, K; Hume, DA; Tomley, FM; Stabler, RA; Blake, DP; (2017) Effects of Eimeria tenella infection on chicken caecal microbiome diversity, exploring variation associated with severity of pathology. PloS one, 12 (9). e0184890. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0184890

Macedo, JP; Currier, RB; Wirdnam, C; Horn, D; Alsford, S; Rentsch, D; (2017) Ornithine uptake and the modulation of drug sensitivity in Trypanosoma brucei. FASEB journal. ISSN 0892-6638 DOI: https://doi.org/10.1096/fj.201700311R

Madden, R; Hutchison, M; Jordan, K; Pennone, V; Gundogdu, O; Corcionivoschi, N; (2017) Prevalence and persistence of Listeria monocytogenes in premises and products of small food business operators in Northern Ireland. Food control, 87. pp. 70-78. ISSN 0956-7135 DOI: https://doi.org/10.1016/j.foodcont.2017.12.020

Malima, R; Emidi, B; Messenger, LA; Oxborough, RM; Batengana, B; Sudi, W; Weston, S; Mtove, G; Mugasa, JP; Mosha, FW; +2 more... Rowland, MW; Kisinza, W; (2017) Experimental hut evaluation of a novel long-lasting non-pyrethroid durable wall lining for control of pyrethroid-resistant Anopheles gambiae and Anopheles funestus in Tanzania. Malaria journal, 16 (1). p. 82. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-017-1710-6

Marks, M; Fookes, M; Wagner, J; Butcher, R; Ghinai, R; Sokana, O; Sarkodie, YA; Lukehart, SA; Solomon, AW; Mabey, DCW; +1 more... Thomson, N; (2017) Diagnostics for yaws eradication: insights from direct next generation sequencing of cutaneous strains of Treponema pallidum. Clinical infectious diseases. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix892

Matsuo, E; Yamazaki, K; Tsuruta, H; Roy, P; (2017) Interaction between a unique minor protein and a major capsid protein of Bluetongue virus controls virus infectivity. Journal of virology. ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.01784-17

McKenna, A; Nompilo, S; Richmond, A; Gundogdu, O; Green, BD; Corcionivoschi, N; (2017) Efficient prevention of Campylobacter spp. entrance in broiler houses improves flock performance at slaughter. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648023 Full text not available from this repository.

Meeks, KAC; Henneman, P; Venema, A; Burr, T; Galbete, C; Danquah, I; Schulze, MB; Mockenhaupt, FP; Owusu-Dabo, E; Rotimi, CN; +8 more... Addo, J; Smeeth, L; Bahendeka, S; Spranger, J; Mannens, MMAM; Zafarmand, MH; Agyemang, C; Adeyemo, A; (2017) An epigenome-wide association study in whole blood of measures of adiposity among Ghanaians: the RODAM study. Clinical epigenetics, 9. p. 103. ISSN 1868-7075 DOI: https://doi.org/10.1186/s13148-017-0403-x

Mensah-Brown, HE; Abugri, J; Asante, KP; Dwomoh, D; Dosoo, D; Atuguba, F; Conway, DJ; Awandare, GA; (2017) Assessing the impact of differences in malaria transmission intensity on clinical and haematological indices in children with malaria. Malaria journal, 16 (1). p. 96. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-017-1745-8

Meredith, EL; Kumar, A; Konno, A; Szular, J; Alsford, S; Seifert, K; Horn, D; Wilkinson, SR; (2017) Distinct activation mechanisms trigger the trypanocidal activity of DNA damaging prodrugs. Molecular microbiology. ISSN 0950-382X DOI: https://doi.org/10.1111/mmi.13767

Messenger, LA; Gilman, RH; Verastegui, M; Galdos-Cardenas, G; Sanchez, G; Valencia, E; Sanchez, L; Malaga, E; Rendell, VR; Jois, M; +8 more... Shah, V; Santos, N; Del Carmen Abastoflor, M; LaFuente, C; Colanzi, R; Bozo, R; Bern, C; Working Group on Chagas disease in Bolivia and Peru; (2017) Towards improving early diagnosis of congenital Chagas disease in an endemic setting. Clinical infectious diseases. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix277

Messenger, LA; Rowland, M; (2017) Insecticide-treated durable wall lining (ITWL): future prospects for control of malaria and other vector-borne diseases. Malaria journal, 16 (1). p. 213. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-017-1867-z

Messenger, LA; Shililu, J; Irish, SR; Anshebo, GY; Tesfaye, AG; Ye-Ebiyo, Y; Chibsa, S; Dengela, D; Dissanayake, G; Kebede, E; +9 more... Zemene, E; Asale, A; Yohannes, M; Taffese, HS; George, K; Fornadel, C; Seyoum, A; Wirtz, RA; Yewhalaw, D; (2017) Insecticide resistance in Anopheles arabiensis from Ethiopia (2012-2016): a nationwide study for insecticide resistance monitoring. Malaria journal, 16 (1). p. 469. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-017-2115-2

Miari, VF; Solanki, P; Hleba, Y; Stabler, RA; Heap, JT; (2017) In Vitro Susceptibility to Closthioamide among Clinical and Reference Strains of Neisseria gonorrhoeae. Antimicrobial agents and chemotherapy, 61. e00929-17. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.00929-17

Mohl, BP; Emmott, E; Roy, P; (2017) Phosphoproteomic analysis reveals the importance of kinase regulation during orbivirus infection. Molecular & cellular proteomics. ISSN 1535-9476 DOI: https://doi.org/10.1074/mcp.M117.067355

Mohl, BP; Roy, P; (2017) Elucidating virus entry using a tetracysteine-tagged virus. Methods (San Diego, Calif). ISSN 1046-2023 DOI: https://doi.org/10.1016/j.ymeth.2017.08.004

Moradigaravand, D; Gouliouris, T; Blane, B; Naydenova, P; Ludden, C; Crawley, C; Brown, NM; Török, ME; Parkhill, J; Peacock, SJ; (2017) Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients. Genome medicine, 9 (1). p. 119. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-017-0507-0

Moradigaravand, D; Jamrozy, D; Mostowy, R; Anderson, A; Nickerson, EK; Thaipadungpanit, J; Wuthiekanun, V; Limmathurotsakul, D; Tandhavanant, S; Wikraiphat, C; +10 more... Wongsuvan, G; Teerawattanasook, N; Jutrakul, Y; Srisurat, N; Chaimanee, P; Eoin West, T; Blane, B; Parkhill, J; Chantratita, N; Peacock, SJ; (2017) Evolution of the Staphylococcus argenteus ST2250 Clone in Northeastern Thailand Is Linked with the Acquisition of Livestock-Associated Staphylococcal Genes. mBio, 8 (4). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.00802-17

Moradigaravand, D; Martin, V; Peacock, SJ; Parkhill, J; (2017) Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland. mBio, 8 (1). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.01976-16

Moradigaravand, Danesh; Martin, Veronique; Peacock, Sharon J; Parkhill, Julian; (2017) Population Structure of Multidrug-Resistant Klebsiella oxytoca within Hospitals across the United Kingdom and Ireland Identifies Sharing of Virulence and Resistance Genes with K-pneumoniae. GENOME BIOLOGY AND EVOLUTION, 9 (3). pp. 574-584. ISSN 1759-6653 DOI: https://doi.org/10.1093/gbe/evx019

Mullineaux-Sanders, C; Collins, JW; Ruano-Gallego, D; Levy, M; Pevsner-Fischer, M; Glegola-Madejska, IT; Sågfors, AM; Wong, JLC; Elinav, E; Crepin, VF; +1 more... Frankel, G; (2017) Citrobacter rodentium Relies on Commensals for Colonization of the Colonic Mucosa. Cell reports, 21 (12). pp. 3381-3389. ISSN 2211-1247 DOI: https://doi.org/10.1016/j.celrep.2017.11.086

Murray, L; (2017) Investigations into the within-host genomic diversity and phenotypic variation of Plasmodium falciparum. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.03928335

Murray, L; Stewart, LB; Tarr, SJ; Ahouidi, AD; Diakite, M; Amambua-Ngwa, A; Conway, DJ; (2017) Multiplication rate variation in the human malaria parasite Plasmodium falciparum. Scientific reports, 7 (1). p. 6436. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-06295-9

Musicha, P; Feasey, NA; Cain, AK; Kallonen, T; Chaguza, C; Peno, C; Khonga, M; Thompson, S; Gray, KJ; Mather, AE; +4 more... Heyderman, RS; Everett, DB; Thomson, NR; Msefula, CL; (2017) Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting. The Journal of antimicrobial chemotherapy. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkx058

Musonda, KG; (2017) Human Cytomegalovirus Transmission in Early Childhood and Impact of Maternal HIV in Zambia: A Molecular Study. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.03615653

Nakatani, Y; Opel-Reading, HK; Merker, M; Machado, D; Andres, S; Kumar, SS; Moradigaravand, D; Coll, F; Perdigão, J; Portugal, I; +19 more... Schön, T; Nair, D; Devi, KRU; Kohl, TA; Beckert, P; Clark, TG; Maphalala, G; Khumalo, D; Diel, R; Klaos, K; Aung, HL; Cook, GM; Parkhill, J; Peacock, SJ; Swaminathan, S; Viveiros, M; Niemann, S; Krause, KL; Köser, CU; (2017) Role of alanine racemase mutations in Mycobacterium tuberculosis D-cycloserine resistance. Antimicrobial agents and chemotherapy. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.01575-17

Okell, LC; Griffin, JT; Roper, C; (2017) Mapping sulphadoxine-pyrimethamine-resistant Plasmodium falciparum malaria in infected humans and in parasite populations in Africa. Scientific reports, 7 (1). p. 7389. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-06708-9

Oshota, O; Conway, M; Fookes, M; Schreiber, F; Chaudhuri, RR; Yu, L; Morgan, FJE; Clare, S; Choudhary, J; Thomson, NR; +4 more... Lio, P; Maskell, DJ; Mastroeni, P; Grant, AJ; (2017) Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice. PloS one, 12 (8). e0181365. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0181365

Page, Andrew; Wailan, Alexander; Shao, Yan; Judge, Kim; Dougan, Gordon; Klemm, Elizabeth; Thomson, Nicholas; Keane, Jacqueline; (2017) PlasmidTron: assembling the cause of phenotypes from NGS data. BiorXiv. DOI: https://doi.org/10.1101/188920

Patin, EC; Geffken, AC; Willcocks, S; Leschczyk, C; Haas, A; Nimmerjahn, F; Lang, R; Ward, TH; Schaible, UE; (2017) Trehalose dimycolate interferes with FcγR-mediated phagosome maturation through Mincle, SHP-1 and FcγRIIB signalling. PloS one, 12 (4). e0174973. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0174973

Pearson, JS; Giogha, C; Mühlen, S; Nachbur, U; Pham, CL; Zhang, Y; Hildebrand, JM; Oates, CV; Lung, TW; Ingle, D; +13 more... Dagley, LF; Bankovacki, A; Petrie, EJ; Schroeder, GN; Crepin, VF; Frankel, G; Masters, SL; Vince, J; Murphy, JM; Sunde, M; Webb, AI; Silke, J; Hartland, EL; (2017) Erratum: EspL is a bacterial cysteine protease effector that cleaves RHIM proteins to block necroptosis and inflammation. Nature Research. DOI: https://doi.org/10.1038/nmicrobiol.2017.24 Full text not available from this repository.

Pearson, JS; Giogha, C; Mühlen, S; Nachbur, U; Pham, CL; Zhang, Y; Hildebrand, JM; Oates, CV; Lung, TW; Ingle, D; +13 more... Dagley, LF; Bankovacki, A; Petrie, EJ; Schroeder, GN; Crepin, VF; Frankel, G; Masters, SL; Vince, J; Murphy, JM; Sunde, M; Webb, AI; Silke, J; Hartland, EL; (2017) EspL is a bacterial cysteine protease effector that cleaves RHIM proteins to block necroptosis and inflammation. Nature microbiology, 2. p. 16258. ISSN 2058-5276 DOI: https://doi.org/10.1038/nmicrobiol.2016.258

Peckham, S; Hann, A; Kendall, S; Gillam, S; (2017) Health promotion and disease prevention in general practice and primary care: a scoping study. Primary health care research & development. pp. 1-12. ISSN 1463-4236 DOI: https://doi.org/10.1017/S1463423617000494

Peltier, J; Shaw, HA; Wren, BW; Fairweather, NF; (2017) Disparate subcellular location of putative sortase substrates in Clostridium difficile. Scientific reports, 7 (1). p. 9204. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-08322-1

Perrin, Amandine; Larsonneur, Elise; Nicholson, Ainsley C; Edwards, David J; Gundlach, Kristin M; Whitney, Anne M; Gulvik, Christopher A; Bell, Melissa E; Rendueles, Olaya; Cury, Jean; +19 more... Hugon, Perrine; Clermont, Dominique; Enouf, Vincent; Loparev, Vladimir; Juieng, Phalasy; Monson, Timothy; Warshauer, David; Elbadawi, Lina I; Walters, Maroya Spalding; Crist, Matthew B; Noble-Wang, Judith; Borlaug, Gwen; Rocha, Eduardo PC; Criscuolo, Alexis; Touchon, Marie; Davis, Jeffrey P; Holt, Kathryn E; McQuiston, John R; Brisse, Sylvain; (2017) Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain. NATURE COMMUNICATIONS, 8. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms15483

Pickering, H; Teng, A; Faal, N; Joof, H; Makalo, P; Cassama, E; Nabicassa, M; Last, AR; Burr, SE; Rowland-Jones, SL; +7 more... Thomson, NR; Roberts, CH; Mabey, DCW; Bailey, RL; Hayward, RD; de la Maza, LM; Holland, MJ; (2017) Genome-wide profiling of humoral immunity and pathogen genes under selection identifies immune evasion tactics of Chlamydia trachomatis during ocular infection. Scientific reports, 7 (1). p. 9634. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-09193-2

Pino, P; Caldelari, R; Mukherjee, B; Vahokoski, J; Klages, N; Maco, B; Collins, CR; Blackman, MJ; Kursula, I; Heussler, V; +2 more... Brochet, M; Soldati-Favre, D; (2017) A multistage antimalarial targets the plasmepsins IX and X essential for invasion and egress. Technical Report. American Association for the Advancement of Science. DOI: https://doi.org/10.1126/science.aaf8675

Portaliou, AG; Tsolis, KC; Loos, MS; Balabanidou, V; Rayo, J; Tsirigotaki, A; Crepin, VF; Frankel, G; Kalodimos, CG; Karamanou, S; +1 more... Economou, A; (2017) Hierarchical protein targeting and secretion is controlled by an affinity switch in the type III secretion system of enteropathogenic Escherichia coli. The EMBO journal, 36 (23). pp. 3517-3531. ISSN 0261-4189 DOI: https://doi.org/10.15252/embj.201797515 Full text not available from this repository.

Ramírez-Vargas, G; Quesada-Gómez, C; Acuña-Amador, L; López-Ureña, D; Murillo, T; Del Mar Gamboa-Coronado, M; Chaves-Olarte, E; Thomson, N; Rodríguez-Cavallini, E; Rodríguez, C; (2017) A Clostridium difficile lineage endemic to Costa Rican hospitals is multidrug-resistant by acquisition of chromosomal mutations and novel mobile genetic elements. Antimicrobial agents and chemotherapy, 61 (4). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.02054-16

Raven, KE; Gouliouris, T; Brodrick, H; Coll, F; Brown, NM; Reynolds, R; Reuter, S; Török, ME; Parkhill, J; Peacock, SJ; (2017) Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing. Clinical infectious diseases, 64 (7). pp. 886-893. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciw872

Raven, KE; Gouliouris, T; Parkhill, J; Peacock, SJ; (2017) Genome-based analysis of Enterococcus faecium bacteremia associated with recurrent and mixed strain infection. Journal of clinical microbiology. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01520-17

Recker, M; Laabei, M; Toleman, MS; Reuter, S; Saunderson, RB; Blane, B; Török, ME; Ouadi, K; Stevens, E; Yokoyama, M; +7 more... Steventon, J; Thompson, L; Milne, G; Bayliss, S; Bacon, L; Peacock, SJ; Massey, RC; (2017) Clonal differences in Staphylococcus aureus bacteraemia-associated mortality. Nature microbiology. ISSN 2058-5276 DOI: https://doi.org/10.1038/s41564-017-0001-x

Ribeiro, AJM; Holliday, GL; Furnham, N; Tyzack, JD; Ferris, K; Thornton, JM; (2017) Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites. Nucleic acids research. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkx1012

Roy, P; (2017) Bluetongue virus structure and assembly. Current opinion in virology, 24. pp. 115-123. ISSN 1879-6257 DOI: https://doi.org/10.1016/j.coviro.2017.05.003

Ruis, C; Roy, S; Brown, JR; Allen, DJ; Goldstein, RA; Breuer, J; (2017) The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission. PloS one, 12 (6). e0179572. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0179572

Runcharoen, C; Moradigaravand, D; Blane, B; Paksanont, S; Thammachote, J; Anun, S; Parkhill, J; Chantratita, N; Peacock, SJ; (2017) Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae. Genome medicine, 9 (1). p. 6. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-017-0397-1

Runcharoen, C; Raven, KE; Reuter, S; Kallonen, T; Paksanont, S; Thammachote, J; Anun, S; Blane, B; Parkhill, J; Peacock, SJ; +1 more... Chantratita, N; (2017) Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand. Genome medicine, 9 (1). p. 81. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-017-0471-8

Sallah, N; Carstensen, T; Wakeham, K; Bagni, R; Labo, N; Pollard, MO; Gurdasani, D; Ekoru, K; Pomilla, C; Young, EH; +8 more... Fatumo, S; Asiki, G; Kamali, A; Sandhu, M; Kellam, P; Whitby, D; Barroso, I; Newton, R; (2017) Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot. GLOBAL HEALTH EPIDEMIOLOGY AND GENOMICS, 2. ISSN 2054-4200 DOI: https://doi.org/10.1017/gheg.2017.16

Sandu, P; Crepin, VF; Drechsler, H; McAinsh, AD; Frankel, G; Berger, CN; (2017) The Enterohemorrhagic Escherichia coli Effector EspW Triggers Actin Remodeling in a Rac1-Dependent Manner. Infection and immunity, 85 (9). ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.00244-17

Scott, TA; Quintaneiro, LM; Cabreiro, F; (2017) Microbiome genetics underpins chemotherapy. Oncotarget, 8 (55). pp. 93303-93304. ISSN 1949-2553 DOI: https://doi.org/10.18632/oncotarget.22066

Scott, TA; Quintaneiro, LM; Norvaisas, P; Lui, PP; Wilson, MP; Leung, KY; Herrera-Dominguez, L; Sudiwala, S; Pessia, A; Clayton, PT; +6 more... Bryson, K; Velagapudi, V; Mills, PB; Typas, A; Greene, NDE; Cabreiro, F; (2017) Host-Microbe Co-metabolism Dictates Cancer Drug Efficacy in C. elegans. Cell, 169 (3). 442-456.e18. ISSN 0092-8674 DOI: https://doi.org/10.1016/j.cell.2017.03.040

Seale, AC; Gordon, NC; Islam, J; Peacock, SJ; Scott, JAG; (2017) AMR Surveillance in low and middle-income settings - A roadmap for participation in the Global Antimicrobial Surveillance System (GLASS). Wellcome open research, 2. p. 92. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.12527.1

Seale, AC; Hutchison, C; Fernandes, S; Stoesser, N; Kelly, H; Lowe, B; Turner, P; Hanson, K; Chandler, CIR; Goodman, C; +2 more... Stabler, RA; Scott, JAG; (2017) Supporting surveillance capacity for antimicrobial resistance: Laboratory capacity strengthening for drug resistant infections in low and middle income countries. Wellcome open research, 2. p. 91. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.12523.1

Sengstake, S; Bergval, IL; Schuitema, AR; de Beer, JL; Phelan, J; de Zwaan, R; Clark, TG; van Soolingen, D; Anthony, RM; (2017) Pyrazinamide resistance-conferring mutations in pncA and the transmission of multidrug resistant TB in Georgia. BMC infectious diseases, 17. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2594-3

Sepúlveda, N; Manjurano, A; Campino, SG; Lemnge, M; Lusingu, J; Olomi, R; Rockett, KA; Hubbart, C; Jeffreys, A; Rowlands, K; +4 more... MalariaGen consortium; Clark, TG; Riley, EM; Drakeley, CJ; (2017) Malaria host candidate genes validated by association with current, recent and historic measures of transmission intensity. The Journal of infectious diseases. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jix250

Seth-Smith, HM; Galán, JC; Goldenberger, D; Lewis, DA; Peuchant, O; Bébéar, C; de Barbeyrac, B; Bénard, A; Carter, I; Kok, J; +6 more... Bruisten, SM; Versteeg, B; Morré, SA; Thomson, NR; Egli, A; de Vries, HJ; (2017) Concern regarding the alleged spread of hypervirulent lymphogranuloma venereum Chlamydia trachomatis strain in Europe. Euro surveillance, 22 (15). ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2017.22.15.30511

Seth-Smith, HMB; Buso, Leonor Sanchez; Livingstone, M; Sait, M; Harris, SR; Aitchison, KD; Vretou, Evangelia; Siarkou, VI; Laroucau, K; Sachse, K; +2 more... Longbottom, D; Thomson, NR; (2017) European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures. BMC GENOMICS, 18 (1). ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-3657-y

Sheen, P; Requena, D; Gushiken, E; Gilman, RH; Antiparra, R; Lucero, B; Lizárraga, P; Cieza, B; Roncal, E; Grandjean, L; +5 more... Pain, A; McNerney, R; Clark, TG; Moore, D; Zimic, M; (2017) A multiple genome analysis of Mycobacterium tuberculosis reveals specific novel genes and mutations associated with pyrazinamide resistance. BMC genomics, 18 (1). p. 769. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4146-z

Sherling, ES; Knuepfer, E; Brzostowski, JA; Miller, LH; Blackman, MJ; van Ooij, C; (2017) The Plasmodium falciparum rhoptry protein RhopH3 plays essential roles in host cell invasion and nutrient uptake. eLife, 6. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.23239

Singapore Zika Study Group; , COLLABORATORS; Ho, ZJM; Hapuarachchi, HC; Barkham, T; Chow, A; Ng, LC; Lee, JMV; Leo, YS; Prem, K; +33 more... Lim, YHG; de Sessions, PF; Rabaa, MA; Chong, CS; Tan, CH; Rajarethinam, J; Tan, J; Anderson, DE; Ong, X; Cook, AR; Chong, CY; Hsu, LY; Yap, G; Lai, YL; Chawla, T; Pan, L; Sim, S; Chen, IM; Thoon, KC; Yung, CF; Li, JH; Ng, HLD; Nandar, K; Ooi, PL; Lin, RTP; Aw, P; Uehara, A; Pratim De, P; Soon, W; Hibberd, ML; Ng, HH; Maurer-Stroh, S; Sessions, OM; (2017) Outbreak of Zika virus infection in Singapore: an epidemiological, entomological, virological, and clinical analysis. The Lancet infectious diseases, 17 (8). pp. 813-821. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(17)30249-9 Full text not available from this repository.

Smith, KC; Inns, T; Decraene, V; Fox, A; Allen, DJ; Shah, A; (2017) An outbreak of norovirus GI-6 infection following a wedding in North West England. Epidemiology and infection, 145 (6). pp. 1239-1245. ISSN 0950-2688 DOI: https://doi.org/10.1017/S0950268816003368

Stabler, RA; Rosado, H; Doyle, R; Negus, D; Carvil, PA; Kristjánsson, JG; Green, DA; Franco-Cendejas, R; Davies, C; Mogensen, A; +2 more... Scott, J; Taylor, PW; (2017) Impact of the Mk VI SkinSuit on skin microbiota of terrestrial volunteers and an International Space Station-bound astronaut. NPJ Microgravity, 3. p. 23. ISSN 2373-8065 DOI: https://doi.org/10.1038/s41526-017-0029-5

Stortz, JA; Serafim, TD; Alsford, S; Wilkes, J; Fernandez-Cortes, F; Hamilton, G; Briggs, E; Lemgruber, L; Horn, D; Mottram, JC; +1 more... McCulloch, R; (2017) Genome-wide and protein kinase-focused RNAi screens reveal conserved and novel damage response pathways in Trypanosoma brucei. PLoS pathogens, 13 (7). e1006477. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1006477

Suarez-Esquivel, Marcela; Baker, Kate S; Ruiz-Villalobos, Nazareth; Hernandez-Mora, Gabriela; Barquero-Calvo, Elias; Gonzalez-Barrientos, Rocio; Castillo-Zeledon, Amanda; Jimenez-Rojas, Cesar; Chacon-Diaz, Carlos; Cloeckaert, Axel; +4 more... Chaves-Olarte, Esteban; Thomson, Nicholas R; Moreno, Edgardo; Guzman-Verri, Caterina; (2017) Brucella Genetic Variability in Wildlife Marine Mammals Populations Relates to Host Preference and Ocean Distribution. GENOME BIOLOGY AND EVOLUTION, 9 (7). pp. 1901-1912. ISSN 1759-6653 DOI: https://doi.org/10.1093/gbe/evx137

Suarez-Esquivel, Marcela; Ruiz-Villalobos, Nazareth; Jimenez-Rojas, Cesar; Barquero-Calvo, Elias; Chacon-Diaz, Carlos; Viquez-Ruiz, Eunice; Rojas-Campos, Norman; Baker, Kate S; Oviedo-Sanchez, Gerardo; Amuy, Ernesto; +4 more... Chaves-Olarte, Esteban; Thomson, Nicholas R; Moreno, Edgardo; Guzman-Verri, Caterina; (2017) Brucella neotomae Infection in Humans, Costa Rica. EMERGING INFECTIOUS DISEASES, 23 (6). pp. 997-1000. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2306.162018

Suttisunhakul, V; Pumpuang, A; Ekchariyawat, P; Wuthiekanun, V; Elrod, MG; Turner, P; Currie, BJ; Phetsouvanh, R; Dance, DA; Limmathurotsakul, D; +2 more... Peacock, SJ; Chantratita, N; (2017) Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the identification of Burkholderia pseudomallei from Asia and Australia and differentiation between Burkholderia species. PloS one, 12 (4). e0175294. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0175294

Taylor, MC; Ward, TH; (2017) Pathogen imaging applications. Methods (San Diego, Calif), 127. pp. 1-2. ISSN 1046-2023 DOI: https://doi.org/10.1016/j.ymeth.2017.08.011

Teixeira da Silva, D; (2017) The role of the MarR transcriptional regulators RrpA and RrpB in the response of Campylobacter jejuni to oxidative and aerobic stress. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.03817562

Teparrukkul, P; Kongkasame, W; Chitsaeng, S; Wongsuwan, G; Wuthiekanun, V; Peacock, SJ; Limmathurotsakul, D; (2017) Gastrointestinal tract involvement in melioidosis. Transactions of the Royal Society of Tropical Medicine and Hygiene, 111 (4). pp. 185-187. ISSN 0035-9203 DOI: https://doi.org/10.1093/trstmh/trx031

The, HC; Florez de Sessions, P; Jie, S; Pham Thanh, D; Thompson, CN; Nguyen Ngoc Minh, C; Chu, CW; Tran, TA; Thomson, NR; Thwaites, GE; +3 more... Rabaa, MA; Hibberd, M; Baker, S; (2017) Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children. Gut microbes. ISSN 1949-0976 DOI: https://doi.org/10.1080/19490976.2017.1361093

Thi Ty Hang, V; Thi Han Ny, N; My Phuc, T; Thi Thanh Tam, P; Thao Huong, D; Dang Trung Nghia, H; Tran Anh Vu, N; Thi Hong Phuong, P; Van Xang, N; Dong, N; +9 more... Nhu Hiep, P; Van Hung, N; Tinh Hien, T; Rabaa, M; Thwaites, GE; Baker, S; Van Tan, L; van Doorn, HR; VIZIONS consortium; (2017) Evaluation of the Luminex xTAG Respiratory Viral Panel FAST v2 assay for detection of multiple respiratory viral pathogens in nasal and throat swabs in Vietnam. Wellcome open research, 2. p. 80. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.12429.1

Thomas, Christopher M; Thomson, Nicholas R; Cerdeno-Tarraga, Ana M; Brown, Celeste J; Top, Eva M; Frost, Laura S; (2017) Annotation of plasmid genes. PLASMID, 91. pp. 61-67. ISSN 0147-619X DOI: https://doi.org/10.1016/j.plasmid.2017.03.006

Titball, RW; Burtnick, MN; Bancroft, GJ; Brett, P; (2017) Burkholderia pseudomallei and Burkholderia mallei vaccines: Are we close to clinical trials? Vaccine, 35 (44). pp. 5981-5989. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2017.03.022

Toleman, MS; Watkins, ER; Williams, T; Blane, B; Sadler, B; Harrison, EM; Coll, F; Parkhill, J; Nazareth, B; Brown, NM; +1 more... Peacock, SJ; (2017) Investigation of a Cluster of Sequence Type 22 Methicillin-Resistant Staphylococcus aureus Transmission in a Community Setting. Clinical infectious diseases. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix539

Torok, Estee; Brodrick, Hayley; Khokhar, Fahad; Blane, Beth; Polgarova, Petra; Brown, Joanne; Enoch, David; Brown, Nicholas; Summers, Charlotte; Preller, Jacobus; +4 more... Thomson, Nick; Dougan, Gordon; Parkhill, Julian; Peacock, Sharon; (2017) Prospective Surveillance and Rapid Whole-Genome Sequencing Detects Two Unsuspected Outbreaks of Carbapenemase-Producing Klebsiella pneumoniae in a UK Teaching Hospital. Open Forum Infectious Diseases, 4 (Suppl). S43-S44. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofx162.104

Tosas Auguet, O; Stabler, RA; Betley, J; Preston, MD; Dhaliwal, M; Gaunt, M; Ioannou, A; Desai, N; Karadag, T; Batra, R; +4 more... Otter, JA; Marbach, H; Clark, TG; Edgeworth, JD; (2017) Frequent undetected MRSA ward-based transmission linked to patient sharing between hospitals. Clinical infectious diseases. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix901

Tremp, AZ; Al-Khattaf, FS; Dessens, JT; (2017) Palmitoylation of Plasmodium alveolins promotes cytoskeletal function. Molecular and biochemical parasitology, 213. pp. 16-21. ISSN 0166-6851 DOI: https://doi.org/10.1016/j.molbiopara.2017.02.003

Tremp, AZ; Sharma, V; Carter, V; Lasonder, E; Dessens, JT; (2017) LCCL protein complex formation in Plasmodium is critically dependent on LAP1. Molecular and biochemical parasitology, 214. pp. 87-90. ISSN 0166-6851 DOI: https://doi.org/10.1016/j.molbiopara.2017.04.005

Trimarsanto, H; Benavente, ED; Noviyanti, R; Utami, RA; Trianty, L; Pava, Z; Getachew, S; Kim, JY; Goo, YK; Wangchuck, S; +7 more... Liu, Y; Gao, Q; Dowd, S; Cheng, Q; Clark, TG; Price, RN; Auburn, S; (2017) VivaxGEN: An open access platform for comparative analysis of short tandem repeat genotyping data in Plasmodium vivax Populations. PLoS neglected tropical diseases, 11 (3). e0005465. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005465

Turner, CE; Bedford, L; Brown, NM; Judge, K; Török, ME; Parkhill, J; Peacock, SJ; (2017) Community outbreaks of group A Streptococcus revealed by genome sequencing. Scientific reports, 7 (1). p. 8554. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-08914-x

Tweedy, JG; Escriva, E; Topf, M; Gompels, UA; (2017) Analyses of Tissue Culture Adaptation of Human Herpesvirus-6A by Whole Genome Deep Sequencing Redefines the Reference Sequence and Identifies Virus Entry Complex Changes. Viruses, 10 (1). ISSN 1999-4915 DOI: https://doi.org/10.3390/v10010016

Tweedy, JG; Prusty, BK; Gompels, UA; (2017) Use of whole genome deep sequencing to define emerging minority variants in virus envelope genes in herpesvirus treated with novel antimicrobial K21. Antiviral research, 146. pp. 201-204. ISSN 0166-3542 DOI: https://doi.org/10.1016/j.antiviral.2017.09.011

Tyzack, JD; Furnham, N; Sillitoe, I; Orengo, CM; Thornton, JM; (2017) Understanding enzyme function evolution from a computational perspective. Current opinion in structural biology, 47. pp. 131-139. ISSN 0959-440X DOI: https://doi.org/10.1016/j.sbi.2017.08.003

Valasatava, Y; Rosato, A; Furnham, N; Thornton, JM; Andreini, C; (2017) To what extent do structural changes in catalytic metal sites affect enzyme function? Journal of inorganic biochemistry, 179. pp. 40-53. ISSN 0162-0134 DOI: https://doi.org/10.1016/j.jinorgbio.2017.11.002

Wagley, S; Vanaporn, M; Rinchai, D; Conejero, L; Lertmemongkolchai, G; Bancroft, GJ; Titball, RW; (2017) A proteasome inhibitor produced by Burkholderia pseudomallei modulates intracellular growth. Microbial pathogenesis, 107. pp. 175-180. ISSN 0882-4010 DOI: https://doi.org/10.1016/j.micpath.2017.03.015

Walakira, A; Tukwasibwe, S; Kiggundu, M; Verra, F; Kakeeto, P; Ruhamyankaka, E; Drakeley, C; Dorsey, G; Kamya, MR; Nsobya, SL; +1 more... Rosenthal, PJ; (2017) Marked variation in prevalence of malaria-protective human genetic polymorphisms across Uganda. Infection, genetics and evolution. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2017.09.021

Walk, J; Reuling, IJ; Behet, MC; Meerstein-Kessel, L; Graumans, W; van Gemert, GJ; Siebelink-Stoter, R; van de Vegte-Bolmer, M; Janssen, T; Teelen, K; +11 more... de Wilt, JHW; de Mast, Q; van der Ven, AJ; Diez Benavente, E; Campino, S; Clark, TG; Huynen, MA; Hermsen, CC; Bijker, EM; Scholzen, A; Sauerwein, RW; (2017) Modest heterologous protection after Plasmodium falciparum sporozoite immunization: a double-blind randomized controlled clinical trial. BMC medicine, 15 (1). p. 168. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-017-0923-4

Weill, FX; Domman, D; Njamkepo, E; Tarr, C; Rauzier, J; Fawal, N; Keddy, KH; Salje, H; Moore, S; Mukhopadhyay, AK; +31 more... Bercion, R; Luquero, FJ; Ngandjio, A; Dosso, M; Monakhova, E; Garin, B; Bouchier, C; Pazzani, C; Mutreja, A; Grunow, R; Sidikou, F; Bonte, L; Breurec, S; Damian, M; Njanpop-Lafourcade, BM; Sapriel, G; Page, AL; Hamze, M; Henkens, M; Chowdhury, G; Mengel, M; Koeck, JL; Fournier, JM; Dougan, G; Grimont, PAD; Parkhill, J; Holt, KE; Piarroux, R; Ramamurthy, T; Quilici, ML; Thomson, NR; (2017) Genomic history of the seventh pandemic of cholera in Africa. Science (New York, NY), 358 (6364). pp. 785-789. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.aad5901 Full text not available from this repository.

West, TE; Wikraiphat, C; Tandhavanant, S; Ariyaprasert, P; Suntornsut, P; Okamoto, S; Mahavanakul, W; Srisamang, P; Phiphitaporn, S; Anukunananchai, J; +3 more... Chetchotisakd, P; Peacock, SJ; Chantratita, N; (2017) Patient Characteristics, Management, and Predictors of Outcome from Severe Community-Onset Staphylococcal Sepsis in Northeast Thailand: A Prospective Multicenter Study. The American journal of tropical medicine and hygiene. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.16-0606

Whitehorn, J; Kien, DTH; Quyen, NTH; Wills, B; Van Vinh Chau, N; Tam, DTH; Tuan, NM; Jaenisch, T; Hibberd, M; Khor, CC; +1 more... Simmons, CP; (2017) Genetic variants of MICB and PLCE1 and associations with the laboratory features of dengue. BMC infectious diseases, 17 (1). p. 412. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2514-6

Wick, Ryan R; Judd, Louise M; Gorrie, Claire L; Holt, Kathryn E; (2017) Completing bacterial genome assemblies with multiplex MinION sequencing. MICROBIAL GENOMICS, 3 (10). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000132

Wick, Ryan R; Judd, Louise M; Gorrie, Claire L; Holt, Kathryn E; (2017) Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PLOS COMPUTATIONAL BIOLOGY, 13 (6). ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1005595

Wick, Ryan; Judd, Louise; Gorrie, Claire; Holt, Kathryn; (2017) Completing bacterial genome assemblies with multiplex MinION sequencing. DOI: https://doi.org/10.1101/160614

Yang, W; Willemse, J; Sawyer, EB; Lou, F; Gong, WB; Zhang, H; Gras, SL; Claessen, D; Perrett, S; (2017) The propensity of the bacterial rodlin protein RdlB to form amyloid fibrils determines its function in Streptomyces coelicolor. Scientific reports, 7. p. 13. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep42867

Yeung, Amy TY; Hale, Christine; Lee, Amy H; Gill, Erin E; Bushell, Wendy; Parry-Smith, David; Goulding, David; Pickard, Derek; Roumeliotis, Theodoros; Choudhary, Jyoti; +4 more... Thomson, Nick; Skarnes, William C; Dougan, Gordon; Hancock, Robert EW; (2017) Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis. NATURE COMMUNICATIONS, 8. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms15013

Yeung, Amy TY; Hale, Christine; Lee, Amy H; Gill, Erin E; Bushell, Wendy; Parry-Smith, David; Goulding, David; Pickard, Derek; Roumeliotis, Theodoros; Choudhary, Jyoti; +4 more... Thomson, Nick; Skarnes, William C; Dougan, Gordon; Hancock, Robert EW; (2017) Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis. NATURE COMMUNICATIONS, 8. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms15013

Zellweger, RM; Carrique-Mas, J; Limmathurotsakul, D; Day, NPJ; Thwaites, GE; Baker, S; Southeast Asia Antimicrobial Resistance Network; (2017) A current perspective on antimicrobial resistance in Southeast Asia. The Journal of antimicrobial chemotherapy. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkx260

Zhang, R; Knapp, M; Suzuki, K; Kajioka, D; Schmidt, JM; Winkler, J; Yilmaz, Ö; Pleschka, M; Cao, J; Kockum, CC; +32 more... Barker, G; Holmdahl, G; Beaman, G; Keene, D; Woolf, AS; Cervellione, RM; Cheng, W; Wilkins, S; Gearhart, JP; Sirchia, F; Di Grazia, M; Ebert, AK; Rösch, W; Ellinger, J; Jenetzky, E; Zwink, N; Feitz, WF; Marcelis, C; Schumacher, J; Martinón-Torres, F; Hibberd, ML; Khor, CC; Heilmann-Heimbach, S; Barth, S; Boyadjiev, SA; Brusco, A; Ludwig, M; Newman, W; Nordenskjöld, A; Yamada, G; Odermatt, B; Reutter, H; (2017) ISL1 is a major susceptibility gene for classic bladder exstrophy and a regulator of urinary tract development. Scientific reports, 7. p. 42170. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep42170

Zhu, YO; Aw, PPK; de Sessions, PF; Hong, S; See, LX; Hong, LZ; Wilm, A; Li, CH; Hue, S; Lim, SG; +3 more... Nagarajan, N; Burkholder, WF; Hibberd, M; (2017) Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history. BMC genomics, 18 (1). p. 829. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4217-1

Zoidis, G; Tsotinis, A; Tsatsaroni, A; Taylor, MC; Kelly, JM; Efstathiou, A; Smirlis, D; Fytas, G; (2017) Lipophilic conformationally constrained spiro carbocyclic 2,6-diketopiperazine-1-acetohydroxamic acid analogues as trypanocidal and leishmanicidal agents: an extended SAR study. Chemical biology & drug design. ISSN 1747-0277 DOI: https://doi.org/10.1111/cbdd.13088