Abaasa, Andrew; Asiki, Gershim; Mpendo, Juliet; Levin, Jonathan; Seeley, Janet; Nielsen, Leslie; Ssetaala, Ali; Nanvubya, Annet; De Bont, Jan; Kaleebu, Pontiano; +1 more... Kamali, Anatoli; (2015) Factors associated with dropout in a long term observational cohort of fishing communities around lake Victoria, Uganda. BMC research notes, 8 (1). 815-. ISSN 1756-0500 DOI: https://doi.org/10.1186/s13104-015-1804-6

Abdallah, Abdallah M; Hill-Cawthorne, Grant A; Otto, Thomas D; Coll, Francesc; Guerra-Assunção, José Afonso; Gao, Ge; Naeem, Raeece; Ansari, Hifzur; Malas, Tareq B; Adroub, Sabir A; +10 more... Verboom, Theo; Ummels, Roy; Zhang, Huoming; Panigrahi, Aswini Kumar; McNerney, Ruth; Brosch, Roland; Clark, Taane G; Behr, Marcel A; Bitter, Wilbert; Pain, Arnab; (2015) Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations. Scientific reports, 5 (1). 15443-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep15443

Alam, Mahmood M; Solyakov, Lev; Bottrill, Andrew R; Flueck, Christian; Siddiqui, Faiza A; Singh, Shailja; Mistry, Sharad; Viskaduraki, Maria; Lee, Kate; Hopp, Christine S; +7 more... Chitnis, Chetan E; Doerig, Christian; Moon, Robert W; Green, Judith L; Holder, Anthony A; Baker, David A; Tobin, Andrew B; (2015) Phosphoproteomics reveals malaria parasite Protein Kinase G as a signalling hub regulating egress and invasion. Nature communications, 6 (1). 7285-. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms8285

Ali, Asho; Hasan, Zahra; McNerney, Ruth; Mallard, Kim; Hill-Cawthorne, Grant; Coll, Francesc; Nair, Mridul; Pain, Arnab; Clark, Taane G; Hasan, Rumina; (2015) Whole genome sequencing based characterization of extensively drug-resistant Mycobacterium tuberculosis isolates from Pakistan. PloS one, 10 (2). e0117771-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0117771

Ashton, Ruth A; Kefyalew, Takele; Rand, Alison; Sime, Heven; Assefa, Ashenafi; Mekasha, Addis; Edosa, Wasihun; Tesfaye, Gezahegn; Cano, Jorge; Teka, Hiwot; +4 more... Reithinger, Richard; Pullan, Rachel L; Drakeley, Chris J; Brooker, Simon J; (2015) Geostatistical modeling of malaria endemicity using serological indicators of exposure collected through school surveys. The American journal of tropical medicine and hygiene, 93 (1). pp. 168-177. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.14-0620

Asiki, Gershim; Baisley, Kathy; Kamali, Anatoli; Kaleebu, Pontiano; Seeley, Janet; Newton, Robert; (2015) A prospective study of trends in consumption of cigarettes and alcohol among adults in a rural Ugandan population cohort, 1994-2011. Tropical medicine & international health, 20 (4). pp. 527-536. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12451 Full text not available from this repository.

Assefa, Samuel; Lim, Caeul; Preston, Mark D; Duffy, Craig W; Nair, Mridul B; Adroub, Sabir A; Kadir, Khamisah A; Goldberg, Jonathan M; Neafsey, Daniel E; Divis, Paul; +5 more... Clark, Taane G; Duraisingh, Manoj T; Conway, David J; Pain, Arnab; Singh, Balbir; (2015) Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi. Proceedings of the National Academy of Sciences of the United States of America, 112 (42). pp. 13027-13032. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1509534112

Badu, Kingsley; Gyan, Ben; Appawu, Maxwell; Mensah, Daniel; Dodoo, Daniel; Yan, Guiyun; Drakeley, Chris; Zhou, Guofa; Owusu-Dabo, Ellis; Koram, Kwadwo Ansah; (2015) Serological evidence of vector and parasite exposure in Southern Ghana: the dynamics of malaria transmission intensity. Parasites & vectors, 8 (1). 251-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-015-0861-y

Baker, Kate S; Burnett, Edward; McGregor, Hannah; Deheer-Graham, Ana; Boinett, Christine; Langridge, Gemma C; Wailan, Alexander M; Cain, Amy K; Thomson, Nicholas R; Russell, Julie E; +1 more... Parkhill, Julian; (2015) The Murray collection of pre-antibiotic era Enterobacteriacae: a unique research resource. Genome medicine, 7 (1). 97-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-015-0222-7

Baker, Kate S; Dallman, Timothy J; Ashton, Philip M; Day, Martin; Hughes, Gwenda; Crook, Paul D; Gilbart, Victoria L; Zittermann, Sandra; Allen, Vanessa G; Howden, Benjamin P; +19 more... Tomita, Takehiro; Valcanis, Mary; Harris, Simon R; Connor, Thomas R; Sintchenko, Vitali; Howard, Peter; Brown, Jeremy D; Petty, Nicola K; Gouali, Malika; Thanh, Duy Pham; Keddy, Karen H; Smith, Anthony M; Talukder, Kaisar A; Faruque, Shah M; Parkhill, Julian; Baker, Stephen; Weill, François-Xavier; Jenkins, Claire; Thomson, Nicholas R; (2015) Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study. The Lancet infectious diseases, 15 (8). pp. 913-921. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(15)00002-X Full text not available from this repository.

Bhattacharya, Bishnupriya; Celma, Cristina C; Roy, Polly; (2015) Influence of cellular trafficking pathway on bluetongue virus infection in ovine cells. VIRUSES-BASEL, 7 (5). pp. 2378-2403. ISSN 1999-4915 DOI: https://doi.org/10.3390/v7052378

Biraro, Irene Andia; Egesa, Moses; Kimuda, Simon; Smith, Steven G; Toulza, Frederic; Levin, Jonathan; Joloba, Moses; Katamba, Achilles; Cose, Stephen; Dockrell, Hazel M; +1 more... Elliott, Alison M; (2015) Effect of isoniazid preventive therapy on immune responses to mycobacterium tuberculosis: an open label randomised, controlled, exploratory study. BMC infectious diseases, 15 (1). 438-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-015-1201-8

Bossé, Janine T; Li, Yanwen; Atherton, Tom G; Walker, Stephanie; Williamson, Susanna M; Rogers, Jon; Chaudhuri, Roy R; Weinert, Lucy A; Holden, Matthew TG; Maskell, Duncan J; +4 more... Tucker, Alexander W; Wren, Brendan W; Rycroft, Andrew N; Langford, Paul R; (2015) Corrigendum to ‘Characterisation of a mobilisable plasmid conferring florfenicol and chloramphenicol resistance in Actinobacillus pleuropneumoniae’ [Veterinary Microbiology 178 (2015) 279–282]. Veterinary microbiology, 179 (3-4). p. 341. ISSN 0378-1135 DOI: https://doi.org/10.1016/j.vetmic.2015.07.002 Full text not available from this repository.

Bossé, Janine T; Li, Yanwen; Atherton, Tom G; Walker, Stephanie; Williamson, Susanna M; Rogers, Jon; Chaudhuri, Roy R; Weinert, Lucy A; Holden, Matthew TG; Maskell, Duncan J; +5 more... Tucker, Alexander W; Wren, Brendan W; Rycroft, Andrew N; Langford, Paul R; BRaDP1T consortium; (2015) Characterisation of a mobilisable plasmid conferring florfenicol and chloramphenicol resistance in Actinobacillus pleuropneumoniae. Veterinary microbiology, 178 (3-4). pp. 279-282. ISSN 0378-1135 DOI: https://doi.org/10.1016/j.vetmic.2015.05.020

Bossé, Janine T; Li, Yanwen; Walker, Stephanie; Atherton, Tom; Fernandez Crespo, Roberto; Williamson, Susanna M; Rogers, Jon; Chaudhuri, Roy R; Weinert, Lucy A; Oshota, Olusegun; +7 more... Holden, Matt TG; Maskell, Duncan J; Tucker, Alexander W; Wren, Brendan W; Rycroft, Andrew N; Langford, Paul R; BRaDP1T Consortium; (2015) Identification of dfrA14 in two distinct plasmids conferring trimethoprim resistance in Actinobacillus pleuropneumoniae. The Journal of antimicrobial chemotherapy, 70 (8). pp. 2217-2222. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkv121

Bowyer, Paul W; Stewart, Lindsay B; Aspeling-Jones, Harvey; Mensah-Brown, Henrietta E; Ahouidi, Ambroise D; Amambua-Ngwa, Alfred; Awandare, Gordon A; Conway, David J; (2015) Variation in Plasmodium falciparum erythrocyte invasion phenotypes and merozoite ligand gene expression across different populations in areas of malaria endemicity. Infection and immunity, 83 (6). pp. 2575-2582. ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.03009-14 Full text not available from this repository.

Carlton, Jane M; Volkman, Sarah K; Uplekar, Swapna; Hupalo, Daniel N; Pereira Alves, João Marcelo; Cui, Liwang; Donnelly, Martin; Roos, David S; Harb, Omar S; Acosta, Monica; +7 more... Read, Andrew; Ribolla, Paulo EM; Singh, Om P; Valecha, Neena; Wassmer, Samuel C; Ferreira, Marcelo; Escalante, Ananias A; (2015) Population Genetics, Evolutionary Genomics, and Genome-Wide Studies of Malaria: A View Across the International Centers of Excellence for Malaria Research. The American journal of tropical medicine and hygiene, 93 (3 Supp). pp. 87-98. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.15-0049

Chaccour, Carlos J; Rabinovich, N Regina; Slater, Hannah; Canavati, Sara E; Bousema, Teun; Lacerda, Marcus; Ter Kuile, Feiko; Drakeley, Chris; Bassat, Quique; Foy, Brian D; +1 more... Kobylinski, Kevin; (2015) Establishment of the Ivermectin Research for Malaria Elimination Network: updating the research agenda. Malaria journal, 14 (1). 243-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-015-0691-6

Cheeseman, Ian H; Miller, Becky; Tan, John C; Tan, Asako; Nair, Shalini; Nkhoma, Standwell C; De Donato, Marcos; Rodulfo, Hectorina; Dondorp, Arjen; Branch, Oralee H; +8 more... Mesia, Lastenia Ruiz; Newton, Paul; Mayxay, Mayfong; Amambua-Ngwa, Alfred; Conway, David J; Nosten, François; Ferdig, Michael T; Anderson, Tim JC; (2015) Population Structure Shapes Copy Number Variation in Malaria Parasites. Molecular biology and evolution, 33 (3). pp. 603-620. ISSN 0737-4038 DOI: https://doi.org/10.1093/molbev/msv282

Chico, R Matthew; Cano, Jorge; Ariti, Cono; Collier, Timothy J; Chandramohan, Daniel; Roper, Cally; Greenwood, Brian; (2015) Influence of malaria transmission intensity and the 581G mutation on the efficacy of intermittent preventive treatment in pregnancy: systematic review and meta-analysis. Tropical medicine & international health, 20 (12). pp. 1621-1633. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12595

Chung The, Hao; Karkey, Abhilasha; Pham Thanh, Duy; Boinett, Christine J; Cain, Amy K; Ellington, Matthew; Baker, Kate S; Dongol, Sabina; Thompson, Corinne; Harris, Simon R; +11 more... Jombart, Thibaut; Le Thi Phuong, Tu; Tran Do Hoang, Nhu; Ha Thanh, Tuyen; Shretha, Shrijana; Joshi, Suchita; Basnyat, Buddha; Thwaites, Guy; Thomson, Nicholas R; Rabaa, Maia A; Baker, Stephen; (2015) A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae. EMBO molecular medicine, 7 (3). pp. 227-239. ISSN 1757-4676 DOI: https://doi.org/10.15252/emmm.201404767

Chung The, Hao; Rabaa, Maia A; Thanh, Duy Pham; Ruekit, Sirigade; Wangchuk, Sonam; Dorji, Tshering; Tshering, Kinzang Pem; Nguyen, To Nguyen Thi; Vinh, Phat Voong; Thanh, Tuyen Ha; +9 more... Minh, Chau Nguyen Ngoc; Turner, Paul; Sar, Poda; Thwaites, Guy; Holt, Kathryn E; Thomson, Nicholas R; Bodhidatta, Ladaporn; Jeffries Mason, Carl; Baker, Stephen; (2015) Introduction and establishment of fluoroquinolone-resistant Shigella sonnei into Bhutan. Microbial genomics, 1 (6). e000042-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000042

Cliff, Jacqueline M; Cho, Jang-Eun; Lee, Ji-Sook; Ronacher, Katharina; King, Elizabeth C; van Helden, Paul; Walzl, Gerhard; Dockrell, Hazel M; (2015) Excessive Cytolytic Responses Predict Tuberculosis Relapse After Apparently Successful Treatment. The Journal of infectious diseases, 213 (3). pp. 485-495. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiv447

Cliff, Jacqueline M; Kaufmann, Stefan HE; McShane, Helen; van Helden, Paul; O'Garra, Anne; (2015) The human immune response to tuberculosis and its treatment: a view from the blood. Immunological reviews, 264 (1). pp. 88-102. ISSN 0105-2896 DOI: https://doi.org/10.1111/imr.12269

Coll, Francesc; McNerney, Ruth; Preston, Mark D; Guerra-Assunção, José Afonso; Warry, Andrew; Hill-Cawthorne, Grant; Mallard, Kim; Nair, Mridul; Miranda, Anabela; Alves, Adriana; +9 more... Perdigão, João; Viveiros, Miguel; Portugal, Isabel; Hasan, Zahra; Hasan, Rumina; Glynn, Judith R; Martin, Nigel; Pain, Arnab; Clark, Taane G; (2015) Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences. Genome medicine, 7 (1). 51-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-015-0164-0

Connor, Thomas R; Barker, Clare R; Baker, Kate S; Weill, François-Xavier; Talukder, Kaisar Ali; Smith, Anthony M; Baker, Stephen; Gouali, Malika; Pham Thanh, Duy; Jahan Azmi, Ishrat; +10 more... Dias da Silveira, Wanderley; Semmler, Torsten; Wieler, Lothar H; Jenkins, Claire; Cravioto, Alejandro; Faruque, Shah M; Parkhill, Julian; Wook Kim, Dong; Keddy, Karen H; Thomson, Nicholas R; (2015) Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri. eLife, 4 (AUGUST). e07335-. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.07335

Conway, David J; (2015) Paths to a malaria vaccine illuminated by parasite genomics. Trends in genetics, 31 (2). pp. 97-107. ISSN 0168-9525 DOI: https://doi.org/10.1016/j.tig.2014.12.005

Cooke, Mary K; Kahindi, Sam C; Oriango, Robin M; Owaga, Chrispin; Ayoma, Elizabeth; Mabuka, Danspaid; Nyangau, Dennis; Abel, Lucy; Atieno, Elizabeth; Awuor, Stephen; +3 more... Drakeley, Chris; Cox, Jonathan; Stevenson, Jennifer; (2015) 'A bite before bed': exposure to malaria vectors outside the times of net use in the highlands of western Kenya. Malaria journal, 14 (1). 259-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-015-0766-4

Costales, Jaime A; Kotton, Camille N; Zurita-Leal, Andrea C; Garcia-Perez, Josselyn; Llewellyn, Martin S; Messenger, Louisa A; Bhattacharyya, Tapan; Burleigh, Barbara A; (2015) Chagas disease reactivation in a heart transplant patient infected by domestic Trypanosoma cruzi discrete typing unit I (TcIDOM). Parasites & vectors, 8 (1). 435-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-015-1039-3

Dalla Costa, Elis R; Vasconcelos, Sidra EG; Esteves, Leonardo S; Gomes, Harrison M; Gomes, Lia L; da Silva, Pedro Almeida; Perdigão, João; Portugal, Isabel; Viveiros, Miguel; McNerney, Ruth; +6 more... Pain, Arnab; Clark, Taane G; Rastogi, Nalin; Unis, Gisela; Rossetti, Maria Lucia R; Suffys, Philip Noel; (2015) Multidrug-Resistant Mycobacterium tuberculosis of the Latin American Mediterranean Lineage, Wrongly Identified as Mycobacterium pinnipedii (Spoligotype International Type 863 [SIT863]), Causing Active Tuberculosis in South Brazil. Journal of clinical microbiology, 53 (12). pp. 3805-3811. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.02012-15 Full text not available from this repository.

Das, Sujaan; Hertrich, Nadine; Perrin, Abigail J; Withers-Martinez, Chrislaine; Collins, Christine R; Jones, Matthew L; Watermeyer, Jean M; Fobes, Elmar T; Martin, Stephen R; Saibil, Helen R; +4 more... Wright, Gavin J; Treeck, Moritz; Epp, Christian; Blackman, Michael J; (2015) Processing of Plasmodium falciparum Merozoite Surface Protein MSP1 Activates a Spectrin-Binding Function Enabling Parasite Egress from RBCs. Cell host & microbe, 18 (4). pp. 433-444. ISSN 1931-3128 DOI: https://doi.org/10.1016/j.chom.2015.09.007

Divis, Paul CS; Singh, Balbir; Anderios, Fread; Hisam, Shamilah; Matusop, Asmad; Kocken, Clemens H; Assefa, Samuel A; Duffy, Craig W; Conway, David J; (2015) Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species. PLoS pathogens, 11 (5). e1004888-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1004888

Duffy, Craig W; Assefa, Samuel A; Abugri, James; Amoako, Nicholas; Owusu-Agyei, Seth; Anyorigiya, Thomas; MacInnis, Bronwyn; Kwiatkowski, Dominic P; Conway, David J; Awandare, Gordon A; (2015) Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity. BMC genomics, 16 (1). 527-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-015-1746-3

Ebruke, Chinelo; Roca, Anna; Egere, Uzochukwu; Darboe, Ousainou; Hill, Philip C; Greenwood, Brian; Wren, Brendan W; Adegbola, Richard A; Antonio, Martin; (2015) Temporal changes in nasopharyngeal carriage of Streptococcus pneumoniae serotype 1 genotypes in healthy Gambians before and after the 7-valent pneumococcal conjugate vaccine. PeerJ, 3 (3). e903-. ISSN 2167-8359 DOI: https://doi.org/10.7717/peerj.903

Farnell, Edward J; Tyagi, Nidhi; Ryan, Stephanie; Chalmers, Iain W; Pinot de Moira, Angela; Jones, Frances M; Wawrzyniak, Jakub; Fitzsimmons, Colin M; Tukahebwa, Edridah M; Furnham, Nicholas; +2 more... Maizels, Rick M; Dunne, David W; (2015) Known Allergen Structures Predict Schistosoma mansoni IgE-Binding Antigens in Human Infection. Frontiers in immunology, 6 (FEB). 26-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2015.00026

Fletcher, Helen A; (2015) Profiling the host immune response to tuberculosis vaccines. Vaccine, 33 (40). pp. 5313-5315. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2015.07.090 Full text not available from this repository.

Francisco, Amanda Fortes; Lewis, Michael D; Jayawardhana, Shiromani; Taylor, Martin C; Chatelain, Eric; Kelly, John M; (2015) Limited Ability of Posaconazole To Cure both Acute and Chronic Trypanosoma cruzi Infections Revealed by Highly Sensitive In Vivo Imaging. Antimicrobial agents and chemotherapy, 59 (8). pp. 4653-4661. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.00520-15

Francisco, Amanda Fortes; Lewis, Michael D; Jayawardhana, Shiromani; Taylor, Martin C; Chatelain, Eric; Kelly, John M; (2015) Reply to "Drug Susceptibility of Genetically Engineered Trypanosoma cruzi Strains and Sterile Cure in Animal Models as a Criterion for Potential Clinical Efficacy of Anti-T. cruzi Drugs". Antimicrobial agents and chemotherapy, 59 (12). 7925-. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.02022-15

García Bustos, María F; González-Prieto, Gabriela; Ramos, Federico; Mora, María C; Hashiguchi, Yoshihisa; Parodi, Cecilia; Basombrío, Miguel A; Moreno, Sonia; Monroig, Sibila; Beckar, Josefina; +6 more... Jaime, Daniela; Sajama, Jesús; Yeo, Matthew; Marco, Jorge D; Locatelli, Fabricio M; Barrio, Alejandra; (2015) Clinical and epidemiological features of leishmaniasis in northwestern-Argentina through a retrospective analysis of recent cases. Acta tropica, 154. pp. 125-132. ISSN 0001-706X DOI: https://doi.org/10.1016/j.actatropica.2015.11.008 Full text not available from this repository.

Getachew, Sisay; To, Sheren; Trimarsanto, Hidayat; Thriemer, Kamala; Clark, Taane G; Petros, Beyene; Aseffa, Abraham; Price, Ric N; Auburn, Sarah; (2015) Variation in Complexity of Infection and Transmission Stability between Neighbouring Populations of Plasmodium vivax in Southern Ethiopia. PloS one, 10 (10). e0140780-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0140780

Glynn, Judith R; Guerra-Assunção, José Afonso; Houben, Rein MGJ; Sichali, Lifted; Mzembe, Themba; Mwaungulu, Lorrain K; Mwaungulu, J Nimrod; McNerney, Ruth; Khan, Palwasha; Parkhill, Julian; +2 more... Crampin, Amelia C; Clark, Taane G; (2015) Whole Genome Sequencing Shows a Low Proportion of Tuberculosis Disease Is Attributable to Known Close Contacts in Rural Malawi. PloS one, 10 (7). e0132840-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0132840

Green, Judith L; Moon, Robert W; Whalley, David; Bowyer, Paul W; Wallace, Claire; Rochani, Ankit; Nageshan, Rishi K; Howell, Steven A; Grainger, Munira; Jones, Hayley M; +7 more... Ansell, Keith H; Chapman, Timothy M; Taylor, Debra L; Osborne, Simon A; Baker, David A; Tatu, Utpal; Holder, Anthony A; (2015) Imidazopyridazine Inhibitors of Plasmodium falciparum Calcium-Dependent Protein Kinase 1 Also Target Cyclic GMP-Dependent Protein Kinase and Heat Shock Protein 90 To Kill the Parasite at Different Stages of Intracellular Development. Antimicrobial agents and chemotherapy, 60 (3). pp. 1464-1475. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.01748-15

Griffin, Jamie T; Hollingsworth, T Déirdre; Reyburn, Hugh; Drakeley, Chris J; Riley, Eleanor M; Ghani, Azra C; (2015) Gradual acquisition of immunity to severe malaria with increasing exposure. Proceedings Biological sciences / The Royal Society, 282 (1801). 20142657-. ISSN 0962-8452 DOI: https://doi.org/10.1098/rspb.2014.2657

Guerra-Assunção, JA; Crampin, AC; Houben, RMGJ; Mzembe, T; Mallard, K; Coll, F; Khan, P; Banda, L; Chiwaya, A; Pereira, RPA; +5 more... McNerney, R; Fine, PEM; Parkhill, J; Clark, TG; Glynn, JR; (2015) Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area. eLife, 4 (4). ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.05166

Hassan, Syeda S; Akram, Muhammad; King, Elizabeth C; Dockrell, Hazel M; Cliff, Jacqueline M; (2015) PD-1, PD-L1 and PD-L2 Gene Expression on T-Cells and Natural Killer Cells Declines in Conjunction with a Reduction in PD-1 Protein during the Intensive Phase of Tuberculosis Treatment. PloS one, 10 (9). e0137646-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0137646

Helb, Danica A; Tetteh, Kevin KA; Felgner, Philip L; Skinner, Jeff; Hubbard, Alan; Arinaitwe, Emmanuel; Mayanja-Kizza, Harriet; Ssewanyana, Isaac; Kamya, Moses R; Beeson, James G; +7 more... Tappero, Jordan; Smith, David L; Crompton, Peter D; Rosenthal, Philip J; Dorsey, Grant; Drakeley, Christopher J; Greenhouse, Bryan; (2015) Novel serologic biomarkers provide accurate estimates of recent Plasmodium falciparum exposure for individuals and communities. Proceedings of the National Academy of Sciences of the United States of America, 112 (32). E4438-E4447. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1501705112 Full text not available from this repository.

Henriques, Gisela; van Schalkwyk, Donelly A; Burrow, Rebekah; Warhurst, David C; Thompson, Eloise; Baker, David A; Fidock, David A; Hallett, Rachel; Flueck, Christian; Sutherland, Colin J; (2015) The Mu subunit of Plasmodium falciparum clathrin-associated adaptor protein 2 modulates in vitro parasite response to artemisinin and quinine. Antimicrobial agents and chemotherapy, 59 (5). pp. 2540-2547. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.04067-14

Hochman, Sarah E; Madaline, Theresa F; Wassmer, Samuel C; Mbale, Emmie; Choi, Namjong; Seydel, Karl B; Whitten, Richard O; Varughese, Julie; Grau, Georges ER; Kamiza, Steve; +5 more... Molyneux, Malcolm E; Taylor, Terrie E; Lee, Sunhee; Milner, Danny A; Kim, Kami; (2015) Fatal Pediatric Cerebral Malaria Is Associated with Intravascular Monocytes and Platelets That Are Increased with HIV Coinfection. mBio, 6 (5). e01390-e01315. ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.01390-15

Holt, Kathryn E; Wertheim, Heiman; Zadoks, Ruth N; Baker, Stephen; Whitehouse, Chris A; Dance, David; Jenney, Adam; Connor, Thomas R; Hsu, Li Yang; Severin, Juliëtte; +18 more... Brisse, Sylvain; Cao, Hanwei; Wilksch, Jonathan; Gorrie, Claire; Schultz, Mark B; Edwards, David J; Nguyen, Kinh Van; Nguyen, Trung Vu; Dao, Trinh Tuyet; Mensink, Martijn; Minh, Vien Le; Nhu, Nguyen Thi Khanh; Schultsz, Constance; Kuntaman, Kuntaman; Newton, Paul N; Moore, Catrin E; Strugnell, Richard A; Thomson, Nicholas R; (2015) Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health. Proceedings of the National Academy of Sciences of the United States of America, 112 (27). E3574-E3581. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1501049112 Full text not available from this repository.

Howes, Rosalind E; Reiner, Robert C; Battle, Katherine E; Longbottom, Joshua; Mappin, Bonnie; Ordanovich, Dariya; Tatem, Andrew J; Drakeley, Chris; Gething, Peter W; Zimmerman, Peter A; +2 more... Smith, David L; Hay, Simon I; (2015) Plasmodium vivax Transmission in Africa. PLoS neglected tropical diseases, 9 (11). e0004222-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004222

Hughes, John; Stabler, Richard; Gaunt, Michael; Karadag, Tacim; Desai, Nergish; Betley, Jason; Ioannou, Avgousta; Aryee, Anna; Hearn, Pasco; Marbach, Helene; +4 more... Patel, Amita; Otter, Jonathan A; Edgeworth, Jonathan D; Tosas Auguet, Olga; (2015) Clonal variation in high- and low-level phenotypic and genotypic mupirocin resistance of MRSA isolates in south-east London. The Journal of antimicrobial chemotherapy, 70 (12). pp. 3191-3199. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkv248

Jamal, Qaisar; Khan, Nazma Habib; Wahid, Sobia; Awan, Mahwish Mustafa; Sutherland, Colin; Shah, Akram; (2015) In-vitro sensitivity of Pakistani Leishmania tropica field isolate against buparvaquone in comparison to standard anti-leishmanial drugs. Experimental parasitology, 154. pp. 93-97. ISSN 0014-4894 DOI: https://doi.org/10.1016/j.exppara.2015.04.017 Full text not available from this repository.

Jones, Sophie; Grignard, Lynn; Nebie, Issa; Chilongola, Jaffu; Dodoo, Daniel; Sauerwein, Robert; Theisen, Michael; Roeffen, Will; Singh, Shrawan Kumar; Singh, Rajesh Kumar; +5 more... Singh, Sanjay; Kyei-Baafour, Eric; Tetteh, Kevin; Drakeley, Chris; Bousema, Teun; (2015) Naturally acquired antibody responses to recombinant Pfs230 and Pfs48/45 transmission blocking vaccine candidates. The Journal of infection, 71 (1). pp. 117-127. ISSN 0163-4453 DOI: https://doi.org/10.1016/j.jinf.2015.03.007 Full text not available from this repository.

Kaleebu, Pontiano; Kirungi, Wilford; Watera, Christine; Asio, Juliet; Lyagoba, Fred; Lutalo, Tom; Kapaata, Anne A; Nanyonga, Faith; Parry, Chris M; Magambo, Brian; +10 more... Nazziwa, Jamirah; Nannyonjo, Maria; Hughes, Peter; Hladik, Wolfgang; Ruberantwari, Anthony; Namuwenge, Norah; Musinguzi, Joshua; Downing, Robert; Katongole-Mbidde, Edward; HIV Drug Resistance Working group; (2015) Virological Response and Antiretroviral Drug Resistance Emerging during Antiretroviral Therapy at Three Treatment Centers in Uganda. PloS one, 10 (12). e0145536-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0145536

Kanji, Akbar; Hasan, Zahra; Ali, Asho; McNerney, Ruth; Mallard, Kim; Coll, Francesc; Hill-Cawthorne, Grant; Nair, Mridul; Clark, Taane G; Zaver, Ambreen; +2 more... Jafri, Sana; Hasan, Rumina; (2015) Characterization of genomic variations in SNPs of PE_PGRS genes reveals deletions and insertions in extensively drug resistant (XDR) M. tuberculosis strains from Pakistan. International journal of mycobacteriology, 4 (1). pp. 73-79. ISSN 2212-5531 DOI: https://doi.org/10.1016/j.ijmyco.2014.11.049

Kaur, Harparkash; Seifert, Karin; Hawkes, Geoffrey E; Coumbarides, Gregory S; Alvar, Jorge; Croft, Simon L; (2015) Chemical and bioassay techniques to authenticate quality of the anti-leishmanial drug miltefosine. The American journal of tropical medicine and hygiene, 92 (6 Supp). pp. 31-38. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.14-0586

Kim, Chang Ho; Lee, Jaehee; Lee, Jisook; Cliff, Jacqueline M; Toulza, Frederic; Smith, Steven; Yoo, Seung Soo; Lee, Shin Yup; Cha, Seung Ick; Park, Jae Yong; +1 more... Dockrell, Hazel M; (2015) Mycobacterial load affects adenosine deaminase 2 levels of tuberculous pleural effusion. The Journal of infection, 71 (4). pp. 488-491. ISSN 0163-4453 DOI: https://doi.org/10.1016/j.jinf.2015.05.015 Full text not available from this repository.

Kim, Jeong Joo; Flueck, Christian; Franz, Eugen; Sanabria-Figueroa, Eduardo; Thompson, Eloise; Lorenz, Robin; Bertinetti, Daniela; Baker, David A; Herberg, Friedrich W; Kim, Choel; (2015) Crystal structures of the carboxyl cGMP binding domain of the Plasmodium falciparum cGMP-dependent protein kinase reveal a novel capping triad crucial for merozoite egress. PLoS pathogens, 11 (2). e1004639-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1004639

King, Christopher L; Davies, D Huw; Felgner, Phil; Baum, Elizabeth; Jain, Aarti; Randall, Arlo; Tetteh, Kevin; Drakeley, Christopher J; Greenhouse, Bryan; (2015) Biosignatures of Exposure/Transmission and Immunity. The American journal of tropical medicine and hygiene, 93 (3 Supp). pp. 16-27. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.15-0037

Longwe, Herbert; Jambo, Kondwani C; Phiri, Kamija S; Mbeye, Nyanyiwe; Gondwe, Thandile; Hall, Tom; Tetteh, Kevin KA; Drakeley, Chris; Mandala, Wilson L; (2015) The effect of daily co-trimoxazole prophylaxis on natural development of antibody-mediated immunity against P. falciparum malaria infection in HIV-exposed uninfected Malawian children. PloS one, 10 (3). e0121643-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0121643

Lynch, Caroline A; Bruce, Jane; Bhasin, Amit; Roper, Cally; Cox, Jonathan; Abeku, Tarekegn A; (2015) Association between recent internal travel and malaria in Ugandan highland and highland fringe areas. Tropical medicine & international health, 20 (6). pp. 773-780. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12480

Manjurano, Alphaxard; Sepulveda, Nuno; Nadjm, Behzad; Mtove, George; Wangai, Hannah; Maxwell, Caroline; Olomi, Raimos; Reyburn, Hugh; Riley, Eleanor M; Drakeley, Christopher J; +2 more... Clark, Taane G; MalariaGEN Consortium; (2015) African glucose-6-phosphate dehydrogenase alleles associated with protection from severe malaria in heterozygous females in Tanzania. PLoS genetics, 11 (2). e1004960-. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1004960

Manjurano, Alphaxard; Sepúlveda, Nuno; Nadjm, Behzad; Mtove, George; Wangai, Hannah; Maxwell, Caroline; Olomi, Raimos; Reyburn, Hugh; Drakeley, Christopher J; Riley, Eleanor M; +2 more... Clark, Taane G; in Collaboration With MalariaGEN; (2015) USP38, FREM3, SDC1, DDC, and LOC727982 Gene Polymorphisms and Differential Susceptibility to Severe Malaria in Tanzania. The Journal of infectious diseases, 212 (7). pp. 1129-1139. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiv192

Martin, Diana L; Bid, Rhiannon; Sandi, Frank; Goodhew, E Brook; Massae, Patrick A; Lasway, Augustin; Philippin, Heiko; Makupa, William; Molina, Sandra; Holland, Martin J; +4 more... Mabey, David CW; Drakeley, Chris; Lammie, Patrick J; Solomon, Anthony W; (2015) Serology for trachoma surveillance after cessation of mass drug administration. PLoS neglected tropical diseases, 9 (2). e0003555-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0003555

Mawa, Patrice A; Nkurunungi, Gyaviira; Egesa, Moses; Webb, Emily L; Smith, Steven G; Kizindo, Robert; Akello, Mirriam; Lule, Swaib A; Muwanga, Moses; Dockrell, Hazel M; +2 more... Cose, Stephen; Elliott, Alison M; (2015) The impact of maternal infection with Mycobacterium tuberculosis on the infant response to bacille Calmette-Guérin immunization. Philosophical transactions of the Royal Society of London Series B, Biological sciences, 370 (1671). p. 20140137. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2014.0137

Mensah-Brown, Henrietta E; Amoako, Nicholas; Abugri, James; Stewart, Lindsay B; Agongo, Godfred; Dickson, Emmanuel K; Ofori, Michael F; Stoute, José A; Conway, David J; Awandare, Gordon A; (2015) Analysis of Erythrocyte Invasion Mechanisms of Plasmodium falciparum Clinical Isolates Across 3 Malaria-Endemic Areas in Ghana. The Journal of infectious diseases, 212 (8). pp. 1288-1297. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiv207 Full text not available from this repository.

Messenger, Louisa A; Yeo, Matthew; Lewis, Michael D; Llewellyn, Martin S; Miles, Michael A; (2015) Molecular genotyping of Trypanosoma cruzi for lineage assignment and population genetics. In: Peacock, C, (ed.) Parasite Genomics Protocols, Second Edition. UNSPECIFIED, pp. 297-337. ISBN 9781493914371 DOI: https://doi.org/10.1007/978-1-4939-1438-8_19 Full text not available from this repository.

Miwanda, Berthe; Moore, Sandra; Muyembe, Jean-Jacques; Nguefack-Tsague, Georges; Kabangwa, Ickel Kakongo; Ndjakani, Daniel Yassa; Mutreja, Ankur; Thomson, Nicholas; Thefenne, Helene; Garnotel, Eric; +4 more... Tshapenda, Gaston; Kakongo, Denis Kandolo; Kalambayi, Guy; Piarroux, Renaud; (2015) Antimicrobial Drug Resistance of Vibrio cholerae, Democratic Republic of the Congo. Emerging infectious diseases, 21 (5). pp. 847-851. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2105.141233

Moule, Madeleine G; Spink, Natasha; Willcocks, Sam; Lim, Jiali; Guerra-Assunção, José Afonso; Cia, Felipe; Champion, Olivia L; Senior, Nicola J; Atkins, Helen S; Clark, Taane; +3 more... Bancroft, Gregory J; Cuccui, Jon; Wren, Brendan W; (2015) Characterization of New Virulence Factors Involved in the Intracellular Growth and Survival of Burkholderia pseudomallei. Infection and immunity, 84 (3). pp. 701-710. ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.01102-15

Nalwoga, Angela; Cose, Stephen; Wakeham, Katie; Miley, Wendell; Ndibazza, Juliet; Drakeley, Christopher; Elliott, Alison; Whitby, Denise; Newton, Robert; (2015) Association between malaria exposure and Kaposi's sarcoma-associated herpes virus seropositivity in Uganda. Tropical medicine & international health, 20 (5). pp. 665-672. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12464

Nankabirwa, Joaniter I; Yeka, Adoke; Arinaitwe, Emmanuel; Kigozi, Ruth; Drakeley, Chris; Kamya, Moses R; Greenhouse, Bryan; Rosenthal, Philip J; Dorsey, Grant; Staedke, Sarah G; (2015) Estimating malaria parasite prevalence from community surveys in Uganda: a comparison of microscopy, rapid diagnostic tests and polymerase chain reaction. Malaria journal, 14 (1). 528-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-015-1056-x

Nielsen, Carolyn M; White, Matthew J; Bottomley, Christian; Lusa, Chiara; Rodríguez-Galán, Ana; Turner, Scarlett EG; Goodier, Martin R; Riley, Eleanor M; (2015) Impaired NK Cell Responses to Pertussis and H1N1 Influenza Vaccine Antigens in Human Cytomegalovirus-Infected Individuals. Journal of immunology (Baltimore, Md, 194 (10). pp. 4657-4667. ISSN 0022-1767 DOI: https://doi.org/10.4049/jimmunol.1403080

Noviyanti, Rintis; Coutrier, Farah; Utami, Retno AS; Trimarsanto, Hidayat; Tirta, Yusrifar K; Trianty, Leily; Kusuma, Andreas; Sutanto, Inge; Kosasih, Ayleen; Kusriastuti, Rita; +7 more... Hawley, William A; Laihad, Ferdinand; Lobo, Neil; Marfurt, Jutta; Clark, Taane G; Price, Ric N; Auburn, Sarah; (2015) Contrasting Transmission Dynamics of Co-endemic Plasmodium vivax and P. falciparum: Implications for Malaria Control and Elimination. PLoS neglected tropical diseases, 9 (5). e0003739-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0003739

Oguike, Mary C; Sutherland, Colin J; (2015) Dimorphism in genes encoding sexual-stage proteins of Plasmodium ovale curtisi and Plasmodium ovale wallikeri. International journal for parasitology, 45 (7). pp. 449-454. ISSN 0020-7519 DOI: https://doi.org/10.1016/j.ijpara.2015.02.004

Okebe, Joseph; Bousema, Teun; Affara, Muna; DiTanna, GianLuca; Eziefula, Alice C; Jawara, Musa; Nwakanma, Davis; Amambua-Ngwa, Alfred; Van Geertruyden, Jean-Pierre; Drakeley, Chris; +1 more... D'Alessandro, Umberto; (2015) The gametocytocidal efficacy of primaquine in malaria asymptomatic carriers treated with dihydroartemisinin-piperaquine in The Gambia (PRINOGAM): study protocol for a randomised controlled trial. Trials, 16 (1). 70-. ISSN 1745-6215 DOI: https://doi.org/10.1186/s13063-015-0597-1

Oladipo, Oladosu O; Wellington, Oyibo A; Sutherland, Colin J; (2015) Persistence of chloroquine-resistant haplotypes of Plasmodium falciparum in children with uncomplicated Malaria in Lagos, Nigeria, four years after change of chloroquine as first-line antimalarial medicine. Diagnostic pathology, 10 (1). 41-. ISSN 1746-1596 DOI: https://doi.org/10.1186/s13000-015-0276-2

Ouédraogo, André Lin; Gonçalves, Bronner P; Gnémé, Awa; Wenger, Edward A; Guelbeogo, Moussa W; Ouédraogo, Amathe; Gerardin, Jaline; Bever, Caitlin A; Lyons, Hil; Pitroipa, Xavier; +7 more... Verhave, Jan Peter; Eckhoff, Philip A; Drakeley, Chris; Sauerwein, Robert; Luty, Adrian JF; Kouyaté, Bocar; Bousema, Teun; (2015) Dynamics of the Human Infectious Reservoir for Malaria Determined by Mosquito Feeding Assays and Ultrasensitive Malaria Diagnosis in Burkina Faso. The Journal of infectious diseases, 213 (1). pp. 90-99. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiv370 Full text not available from this repository.

Phelan, Jody; Maitra, Arundhati; McNerney, Ruth; Nair, Mridul; Gupta, Antima; Coll, Francesc; Pain, Arnab; Bhakta, Sanjib; Clark, Taane G; (2015) The draft genome of Mycobacterium aurum, a potential model organism for investigating drugs against Mycobacterium tuberculosis and Mycobacterium leprae. International journal of mycobacteriology, 4 (3). pp. 207-216. ISSN 2212-5531 DOI: https://doi.org/10.1016/j.ijmyco.2015.05.001

Prentice, Sarah; Webb, Emily L; Dockrell, Hazel M; Kaleebu, Pontiano; Elliott, Alison M; Cose, Stephen; (2015) Investigating the non-specific effects of BCG vaccination on the innate immune system in Ugandan neonates: study protocol for a randomised controlled trial. Trials, 16 (1). 149-. ISSN 1745-6215 DOI: https://doi.org/10.1186/s13063-015-0682-5

Ramdani, Ghania; Naissant, Bernina; Thompson, Eloise; Breil, Florence; Lorthiois, Audrey; Dupuy, Florian; Cummings, Ross; Duffier, Yoann; Corbett, Yolanda; Mercereau-Puijalon, Odile; +5 more... Vernick, Kenneth; Taramelli, Donatella; Baker, David A; Langsley, Gordon; Lavazec, Catherine; (2015) cAMP-Signalling Regulates Gametocyte-Infected Erythrocyte Deformability Required for Malaria Parasite Transmission. PLoS pathogens, 11 (5). e1004815-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1004815

Reuter, Sandra; Corander, Jukka; de Been, Mark; Harris, Simon; Cheng, Lu; Hall, Miquette; Thomson, Nicholas R; McNally, Alan; (2015) Directional gene flow and ecological separation in Yersinia enterocolitica. Microbial genomics, 1 (3). e000030-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000030

Rhodes, Sophie J; Knight, Gwenan M; Fielding, Katherine; Scriba, Thomas J; Pathan, Ansar A; McShane, Helen; Fletcher, Helen; White, Richard G; (2015) Individual-level factors associated with variation in mycobacterial-specific immune response: Gender and previous BCG vaccination status. Tuberculosis (Edinburgh, Scotland), 96. pp. 37-43. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2015.10.002

Riede, O; Seifert, K; Oswald, D; Endmann, A; Hock, C; Winkler, A; Salguero, FJ; Schroff, M; Croft, SL; Juhls, C; (2015) Preclinical safety and tolerability of a repeatedly administered human leishmaniasis DNA vaccine. Gene therapy, 22 (8). pp. 628-635. ISSN 0969-7128 DOI: https://doi.org/10.1038/gt.2015.35

Roberts, Chrissy H; Franklin, Christopher S; Makalo, Pateh; Joof, Hassan; Sarr, Isatou; Mahdi, Olaimatu S; Sillah, Ansumana; Bah, Momodou; Payne, Felicity; Jeffreys, Anna E; +13 more... Bottomley, William; Natividad, Angels; Molina-Gonzalez, Sandra; Burr, Sarah E; Preston, Mark; Kwiatkowski, Dominic; Rockett, Kirk A; Clark, Taane G; Burton, Matthew J; Mabey, David CW; Bailey, Robin; Barroso, Inês; Holland, Martin J; (2015) Conjunctival fibrosis and the innate barriers to Chlamydia trachomatis intracellular infection: a genome wide association study. Scientific reports, 5 (1). 17447-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep17447

Sahu, Praveen K; Satpathi, Sanghamitra; Behera, Prativa K; Mishra, Saroj K; Mohanty, Sanjib; Wassmer, Samuel Crocodile; (2015) Pathogenesis of cerebral malaria: new diagnostic tools, biomarkers, and therapeutic approaches. Frontiers in cellular and infection microbiology, 5 (OCT). 75-. ISSN 2235-2988 DOI: https://doi.org/10.3389/fcimb.2015.00075

Samad, Hanif; Coll, Francesc; Preston, Mark D; Ocholla, Harold; Fairhurst, Rick M; Clark, Taane G; (2015) Imputation-based population genetics analysis of Plasmodium falciparum malaria parasites. PLoS genetics, 11 (4). e1005131-. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1005131

Santolamazza, Federica; Caputo, Beniamino; Nwakanma, Davis C; Fanello, Caterina; Petrarca, Vincenzo; Conway, David J; Weetman, David; Pinto, Joao; Mancini, Emiliano; della Torre, Alessandra; (2015) Remarkable diversity of intron-1 of the para voltage-gated sodium channel gene in an Anopheles gambiae/Anopheles coluzzii hybrid zone. Malaria journal, 14 (1). 9-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-014-0522-1

Schito, Marco; Migliori, Giovanni Battista; Fletcher, Helen A; McNerney, Ruth; Centis, Rosella; D'Ambrosio, Lia; Bates, Matthew; Kibiki, Gibson; Kapata, Nathan; Corrah, Tumena; +6 more... Bomanji, Jamshed; Vilaplana, Cris; Johnson, Daniel; Mwaba, Peter; Maeurer, Markus; Zumla, Alimuddin; (2015) Perspectives on Advances in Tuberculosis Diagnostics, Drugs, and Vaccines. Clinical infectious diseases, 61Supp (suppl ). S102-S118. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/civ609 Full text not available from this repository.

Schousboe, Mette L; Ranjitkar, Samir; Rajakaruna, Rupika S; Amerasinghe, Priyanie H; Morales, Francisco; Pearce, Richard; Ord, Rosalyn; Leslie, Toby; Rowland, Mark; Gadalla, Nahla B; +4 more... Konradsen, Flemming; Bygbjerg, Ib C; Roper, Cally; Alifrangis, Michael; (2015) Multiple Origins of Mutations in the mdr1 Gene--A Putative Marker of Chloroquine Resistance in P. vivax. PLoS neglected tropical diseases, 9 (11). e0004196-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004196

Seifert, Karin; Juhls, Christiane; Salguero, Francisco J; Croft, Simon L; (2015) Sequential chemoimmunotherapy of experimental visceral leishmaniasis using a single low dose of liposomal amphotericin B and a novel DNA vaccine candidate. Antimicrobial agents and chemotherapy, 59 (9). pp. 5819-5823. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.00273-15 Full text not available from this repository.

Sepúlveda, Nuno; Paulino, Carlos Daniel; Drakeley, Chris; (2015) Sample size and power calculations for detecting changes in malaria transmission using antibody seroconversion rate. Malaria journal, 14 (1). 529-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-015-1050-3

Sepúlveda, Nuno; Stresman, Gillian; White, Michael T; Drakeley, Chris J; (2015) Current Mathematical Models for Analyzing Anti-Malarial Antibody Data with an Eye to Malaria Elimination and Eradication. Journal of immunology research, 2015. 738030-. ISSN 2314-8861 DOI: https://doi.org/10.1155/2015/738030

Slater, Hannah C; Ross, Amanda; Ouédraogo, André Lin; White, Lisa J; Nguon, Chea; Walker, Patrick GT; Ngor, Pengby; Aguas, Ricardo; Silal, Sheetal P; Dondorp, Arjen M; +7 more... La Barre, Paul; Burton, Robert; Sauerwein, Robert W; Drakeley, Chris; Smith, Thomas A; Bousema, Teun; Ghani, Azra C; (2015) Assessing the impact of next-generation rapid diagnostic tests on Plasmodium falciparum malaria elimination strategies. Nature, 528 (7580). S94-101. ISSN 0028-0836 DOI: https://doi.org/10.1038/nature16040 Full text not available from this repository.

Smith, Steven G; Smits, Kaatje; Joosten, Simone A; van Meijgaarden, Krista E; Satti, Iman; Fletcher, Helen A; Caccamo, Nadia; Dieli, Francesco; Mascart, Francoise; McShane, Helen; +3 more... Dockrell, Hazel M; Ottenhoff, Tom HM; TBVI TB Biomarker Working Group; (2015) Intracellular Cytokine Staining and Flow Cytometry: Considerations for Application in Clinical Trials of Novel Tuberculosis Vaccines. PloS one, 10 (9). e0138042-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0138042

Sola, Irene; Castellà, Sílvia; Viayna, Elisabet; Galdeano, Carles; Taylor, Martin C; Gbedema, Stephen Y; Pérez, Belén; Clos, M Victòria; Jones, Deuan C; Fairlamb, Alan H; +3 more... Wright, Colin W; Kelly, John M; Muñoz-Torrero, Diego; (2015) Synthesis, biological profiling and mechanistic studies of 4-aminoquinoline-based heterodimeric compounds with dual trypanocidal-antiplasmodial activity. Bioorganic & medicinal chemistry, 23 (16). pp. 5156-5167. ISSN 0968-0896 DOI: https://doi.org/10.1016/j.bmc.2015.01.031 Full text not available from this repository.

Ssetaala, Ali; Nakiyingi-Miiro, Jessica; Asiki, Gershim; Kyakuwa, Nassim; Mpendo, Juliet; Van Dam, Govert J; Corstjens, Paul L; Pala, Pietro; Nielsen, Leslie; Bont, Jan De; +5 more... Pantaleo, Giuseppe; Kiwanuka, Noah; Kaleebu, Pontiano; Kamali, Anatoli; Elliott, Alison M; (2015) Schistosoma mansoni and HIV acquisition in fishing communities of Lake Victoria, Uganda: a nested case-control study. Tropical medicine & international health, 20 (9). pp. 1190-1195. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12531

Stevenson, Jennifer C; Stresman, Gillian H; Baidjoe, Amrish; Okoth, Albert; Oriango, Robin; Owaga, Chrispin; Marube, Elizabeth; Bousema, Teun; Cox, Jonathan; Drakeley, Chris; (2015) Use of different transmission metrics to describe malaria epidemiology in the highlands of western Kenya. Malaria journal, 14 (1). 418-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-015-0944-4

Stone, Will; Gonçalves, Bronner P; Bousema, Teun; Drakeley, Chris; (2015) Assessing the infectious reservoir of falciparum malaria: past and future. Trends in parasitology, 31 (7). pp. 287-296. ISSN 1471-4922 DOI: https://doi.org/10.1016/j.pt.2015.04.004 Full text not available from this repository.

Stone, Will; Grabias, Bryan; Lanke, Kjerstin; Zheng, Hong; Locke, Emily; Diallo, Diadier; Birkett, Ashley; Morin, Merribeth; Bousema, Teun; Kumar, Sanjai; (2015) A comparison of Plasmodium falciparum circumsporozoite protein-based slot blot and ELISA immuno-assays for oocyst detection in mosquito homogenates. Malaria journal, 14 (1). 451-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-015-0954-2

Stresman, Gillian H; Baidjoe, Amrish Y; Stevenson, Jennifer; Grignard, Lynn; Odongo, Wycliffe; Owaga, Chrispin; Osoti, Victor; Makori, Euniah; Shagari, Shehu; Marube, Elisabeth; +3 more... Cox, Jonathan; Drakeley, Chris; Bousema, Teun; (2015) Focal Screening to Identify the Subpatent Parasite Reservoir in an Area of Low and Heterogeneous Transmission in the Kenya Highlands. The Journal of infectious diseases, 212 (11). pp. 1768-1777. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiv302 Full text not available from this repository.

Sullivan, Richard T; Kim, Charles C; Fontana, Mary F; Feeney, Margaret E; Jagannathan, Prasanna; Boyle, Michelle J; Drakeley, Chris J; Ssewanyana, Isaac; Nankya, Felistas; Mayanja-Kizza, Harriet; +2 more... Dorsey, Grant; Greenhouse, Bryan; (2015) FCRL5 Delineates Functionally Impaired Memory B Cells Associated with Plasmodium falciparum Exposure. PLoS pathogens, 11 (5). e1004894-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1004894

Tadesse, Fitsum G; Pett, Helmi; Baidjoe, Amrish; Lanke, Kjerstin; Grignard, Lynn; Sutherland, Colin; Hall, Tom; Drakeley, Chris; Bousema, Teun; Mamo, Hassen; (2015) Submicroscopic carriage of Plasmodium falciparum and Plasmodium vivax in a low endemic area in Ethiopia where no parasitaemia was detected by microscopy or rapid diagnostic test. Malaria journal, 14 (1). 303-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-015-0821-1

Taylor, Martin C; Lewis, Michael D; Fortes Francisco, Amanda; Wilkinson, Shane R; Kelly, John M; (2015) The Trypanosoma cruzi vitamin C dependent peroxidase confers protection against oxidative stress but is not a determinant of virulence. PLoS neglected tropical diseases, 9 (4). e0003707-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0003707

Teo, Beatrix Huei-Yi; Lansdell, Paul; Smith, Valerie; Blaze, Marie; Nolder, Debbie; Beshir, Khalid B; Chiodini, Peter L; Cao, Jun; Färnert, Anna; Sutherland, Colin J; (2015) Delayed Onset of Symptoms and Atovaquone-Proguanil Chemoprophylaxis Breakthrough by Plasmodium malariae in the Absence of Mutation at Codon 268 of pmcytb. PLoS neglected tropical diseases, 9 (10). e0004068-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004068

van Schalkwyk, Donelly A; Sutherland, Colin J; (2015) Malaria resistance to non-artemisinin partner drugs: how to reACT. The Lancet infectious diseases, 15 (6). pp. 621-623. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(15)70080-0 Full text not available from this repository.

van den Hoogen, Lotus L; Griffin, Jamie T; Cook, Jackie; Sepúlveda, Nuno; Corran, Patrick; Conway, David J; Milligan, Paul; Affara, Muna; Allen, Stephen J; Proietti, Carla; +6 more... Ceesay, Serign J; Targett, Geoffrey A; D'Alessandro, Umberto; Greenwood, Brian; Riley, Eleanor M; Drakeley, Chris; (2015) Serology describes a profile of declining malaria transmission in Farafenni, The Gambia. Malaria journal, 14 (1). 416-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-015-0939-1

WAMIN consortium authors include (in alphabetical order):; Ahouidi, Ambroise D; Amambua-Ngwa, Alfred; Awandare, Gordon A; Bei, Amy K; Conway, David J; Diakite, Mahamadou; Duraisingh, Manoj T; Rayner, Julian C; Zenonos, Zenon A; (2015) Malaria Vaccine Development: Focusing Field Erythrocyte Invasion Studies on Phenotypic Diversity: The West African Merozoite Invasion Network (WAMIN). Trends in parasitology, 32 (4). pp. 274-283. ISSN 1471-4922 DOI: https://doi.org/10.1016/j.pt.2015.11.009 Full text not available from this repository.

Watermeyer, Jean M; Hale, Victoria L; Hackett, Fiona; Clare, Daniel K; Cutts, Erin E; Vakonakis, Ioannis; Fleck, Roland A; Blackman, Michael J; Saibil, Helen R; (2015) A spiral scaffold underlies cytoadherent knobs in Plasmodium falciparum-infected erythrocytes. Blood, 127 (3). pp. 343-351. ISSN 0006-4971 DOI: https://doi.org/10.1182/blood-2015-10-674002

White, Michael T; Verity, Robert; Griffin, Jamie T; Asante, Kwaku Poku; Owusu-Agyei, Seth; Greenwood, Brian; Drakeley, Chris; Gesase, Samwel; Lusingu, John; Ansong, Daniel; +28 more... Adjei, Samuel; Agbenyega, Tsiri; Ogutu, Bernhards; Otieno, Lucas; Otieno, Walter; Agnandji, Selidji T; Lell, Bertrand; Kremsner, Peter; Hoffman, Irving; Martinson, Francis; Kamthunzu, Portia; Tinto, Halidou; Valea, Innocent; Sorgho, Hermann; Oneko, Martina; Otieno, Kephas; Hamel, Mary J; Salim, Nahya; Mtoro, Ali; Abdulla, Salim; Aide, Pedro; Sacarlal, Jahit; Aponte, John J; Njuguna, Patricia; Marsh, Kevin; Bejon, Philip; Riley, Eleanor M; Ghani, Azra C; (2015) Immunogenicity of the RTS,S/AS01 malaria vaccine and implications for duration of vaccine efficacy: secondary analysis of data from a phase 3 randomised controlled trial. The Lancet infectious diseases, 15 (12). pp. 1450-1458. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(15)00239-X

Wong, Meng L; Chua, Tock H; Leong, Cherng S; Khaw, Loke T; Fornace, Kimberly; Wan-Sulaiman, Wan-Yusoff; William, Timothy; Drakeley, Chris; Ferguson, Heather M; Vythilingam, Indra; (2015) Seasonal and Spatial Dynamics of the Primary Vector of Plasmodium knowlesi within a Major Transmission Focus in Sabah, Malaysia. PLoS neglected tropical diseases, 9 (10). e0004135-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004135

Wong, Vanessa K; Baker, Stephen; Pickard, Derek J; Parkhill, Julian; Page, Andrew J; Feasey, Nicholas A; Kingsley, Robert A; Thomson, Nicholas R; Keane, Jacqueline A; Weill, François-Xavier; +64 more... Edwards, David J; Hawkey, Jane; Harris, Simon R; Mather, Alison E; Cain, Amy K; Hadfield, James; Hart, Peter J; Thieu, Nga Tran Vu; Klemm, Elizabeth J; Glinos, Dafni A; Breiman, Robert F; Watson, Conall H; Kariuki, Samuel; Gordon, Melita A; Heyderman, Robert S; Okoro, Chinyere; Jacobs, Jan; Lunguya, Octavie; Edmunds, W John; Msefula, Chisomo; Chabalgoity, Jose A; Kama, Mike; Jenkins, Kylie; Dutta, Shanta; Marks, Florian; Campos, Josefina; Thompson, Corinne; Obaro, Stephen; MacLennan, Calman A; Dolecek, Christiane; Keddy, Karen H; Smith, Anthony M; Parry, Christopher M; Karkey, Abhilasha; Mulholland, E Kim; Campbell, James I; Dongol, Sabina; Basnyat, Buddha; Dufour, Muriel; Bandaranayake, Don; Naseri, Take Toleafoa; Singh, Shalini Pravin; Hatta, Mochammad; Newton, Paul; Onsare, Robert S; Isaia, Lupeoletalalei; Dance, David; Davong, Viengmon; Thwaites, Guy; Wijedoru, Lalith; Crump, John A; De Pinna, Elizabeth; Nair, Satheesh; Nilles, Eric J; Thanh, Duy Pham; Turner, Paul; Soeng, Sona; Valcanis, Mary; Powling, Joan; Dimovski, Karolina; Hogg, Geoff; Farrar, Jeremy; Holt, Kathryn E; Dougan, Gordon; (2015) Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. Nature genetics, 47 (6). pp. 632-639. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3281 Full text not available from this repository.

Wu, Lindsey; van den Hoogen, Lotus L; Slater, Hannah; Walker, Patrick GT; Ghani, Azra C; Drakeley, Chris J; Okell, Lucy C; (2015) Comparison of diagnostics for the detection of asymptomatic Plasmodium falciparum infections to inform control and elimination strategies. Nature, 528 (7580). S86-S93. ISSN 0028-0836 DOI: https://doi.org/10.1038/nature16039 Full text not available from this repository.

Zongo, Issaka; Milligan, Paul; Compaore, Yves Daniel; Some, A Fabrice; Greenwood, Brian; Tarning, Joel; Rosenthal, Philip J; Sutherland, Colin; Nosten, Francois; Ouedraogo, Jean-Bosco; (2015) Randomized Noninferiority Trial of Dihydroartemisinin-Piperaquine Compared with Sulfadoxine-Pyrimethamine plus Amodiaquine for Seasonal Malaria Chemoprevention in Burkina Faso. Antimicrobial agents and chemotherapy, 59 (8). pp. 4387-4396. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.04923-14