Items where Author or Contributor is "Phelan, J"

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Number of items: 21.

2020

Doyle, RM; O'Sullivan, DM; Aller, SD; Bruchmann, S; Clark, T; Pelegrin, AC; Cormican, M; Diez Benavente, E; Ellington, MJ; McGrath, E; +11 more... Motro, Y; Nguyen, TPT; Phelan, J; Shaw, LP; Stabler, RA; van Belkum, A; van Dorp, L; Woodford, N; Moran-Gilad, J; Huggett, JF; Harris, KA; (2020) Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: An inter-laboratory study. Microbial Genomics. ISSN 2057-5858 https://researchonline.lshtm.ac.uk/id/eprint/4655844 (In Press)
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2019

Ajawatanawong, Pravech; Yanai, Hideki; Smittipat, Nat; Disratthakit, Areeya; Yamada, Norio; Miyahara, Reiko; Nedsuwan, Supalert; Imasanguan, Worarat; Kantipong, Pacharee; Chaiyasirinroje, Boonchai; +16 more... Wongyai, Jiraporn; Plitphonganphim, Supada; Tantivitayakul, Pornpen; Phelan, Jody; Parkhill, Julian; Clark, Taane G; Hibberd, Martin L; Ruangchai, Wuthiwat; Palittapongarnpim, Panawun; Juthayothin, Tada; Thawornwattana, Yuttapong; Viratyosin, Wasna; Tongsima, Sissades; Mahasirimongkol, Surakameth; Tokunaga, Katsushi; Palittapongarnpim, Prasit; (2019) A novel Ancestral Beijing sublineage of Mycobacterium tuberculosis suggests the transition site to Modern Beijing sublineages. Scientific reports, 9 (1). p. 13718. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-019-50078-3
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Doyle, Ronan M; O’Sullivan, Denise M; Aller, Sean D; Bruchmann, Sebastian; Clark, Tanne; Pelegrin, Andreu Coello; Cormican, Martin; Benavente, Ernest Diez; Ellington, Matthew J; McGrath, Elaine; +11 more... Motro, Yair; Thuy Nguyen, Thi Phuong; Phelan, Jody; Shaw, Liam P; Stabler, Richard A; van Belkum, Alex; van Dorp, Lucy; Woodford, Neil; Moran-Gilad, Jacob; Huggett, Jim F; Harris, Kathryn A; (2019) Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: An inter-laboratory study. BioRxiv. DOI: https://doi.org/10.1101/793885
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Jabbar, Abdul; Phelan, Jody E; de Sessions, Paola Florez; Khan, Taj Ali; Rahman, Hazir; Khan, Sadiq Noor; Cantillon, Daire M; Wildner, Leticia Muraro; Ali, Sajid; Campino, Susana; +2 more... Waddell, Simon J; Clark, Taane G; (2019) Whole genome sequencing of drug resistant Mycobacterium tuberculosis isolates from a high burden tuberculosis region of North West Pakistan. Scientific reports, 9 (1). p. 14996. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-019-51562-6
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2018

Coll, F; Phelan, J; Hill-Cawthorne, GA; Nair, MB; Mallard, K; Ali, S; Abdallah, AM; Alghamdi, S; Alsomali, M; Ahmed, AO; +41 more... Portelli, S; Oppong, Y; Alves, A; Bessa, TB; Campino, S; Caws, M; Chatterjee, A; Crampin, AC; Dheda, K; Furnham, N; Glynn, JR; Grandjean, L; Ha, DM; Hasan, R; Hasan, Z; Hibberd, ML; Joloba, M; Jones-López, EC; Matsumoto, T; Miranda, A; Moore, DJ; Mocillo, N; Panaiotov, S; Parkhill, J; Penha, C; Perdigão, J; Portugal, I; Rchiad, Z; Robledo, J; Sheen, P; Shesha, NT; Sirgel, FA; Sola, C; Sousa, EO; Streicher, EM; Van Helden, P; Viveiros, M; Warren, RM; McNerney, R; Pain, A; Clark, TG; (2018) Author Correction: Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-018-0074-3 Full text not available from this repository.

Coll, F; Phelan, J; Hill-Cawthorne, GA; Nair, MB; Mallard, K; Ali, S; Abdallah, AM; Alghamdi, S; Alsomali, M; Ahmed, AO; +41 more... Portelli, S; Oppong, Y; Alves, A; Bessa, TB; Campino, S; Caws, M; Chatterjee, A; Crampin, AC; Dheda, K; Furnham, N; Glynn, JR; Grandjean, L; Minh Ha, D; Hasan, R; Hasan, Z; Hibberd, ML; Joloba, M; Jones-López, EC; Matsumoto, T; Miranda, A; Moore, DJ; Mocillo, N; Panaiotov, S; Parkhill, J; Penha, C; Perdigão, J; Portugal, I; Rchiad, Z; Robledo, J; Sheen, P; Shesha, NT; Sirgel, FA; Sola, C; Oliveira Sousa, E; Streicher, EM; Helden, PV; Viveiros, M; Warren, RM; McNerney, R; Pain, A; Clark, TG; (2018) Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-017-0029-0
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Higgins, M; Ravenhall, M; Ward, D; Phelan, J; Ibrahim, A; Forrest, MS; Clark, TG; Campino, S; (2018) PrimedRPA: Primer design for Recombinase polymerase amplification assays. Bioinformatics (Oxford, England). ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/bty701
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Palittapongarnpim, P; Ajawatanawong, P; Viratyosin, W; Smittipat, N; Disratthakit, A; Mahasirimongkol, S; Yanai, H; Yamada, N; Nedsuwan, S; Imasanguan, W; +13 more... Kantipong, P; Chaiyasirinroje, B; Wongyai, J; Toyo-Oka, L; Phelan, J; Parkhill, J; Clark, TG; Hibberd, ML; Ruengchai, W; Palittapongarnpim, P; Juthayothin, T; Tongsima, S; Tokunaga, K; (2018) Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. Scientific reports, 8 (1). p. 11597. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-29986-3
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Phelan, J; de Sessions, PF; Tientcheu, L; Perdigao, J; Machado, D; Hasan, R; Hasan, Z; Bergval, IL; Anthony, R; McNerney, R; +6 more... Antonio, M; Portugal, I; Viveiros, M; Campino, S; Hibberd, ML; Clark, TG; (2018) Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally. Scientific reports, 8 (1). p. 160. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-18188-y
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Sobkowiak, B; Glynn, JR; Houben, RMGJ; Mallard, K; Phelan, JE; Guerra-Assunção, JA; Banda, L; Mzembe, T; Viveiros, M; McNerney, R; +3 more... Parkhill, J; Crampin, AC; Clark, TG; (2018) Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. BMC genomics, 19 (1). p. 613. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-018-4988-z
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2017

C de Oliveira, T; Rodrigues, PT; Menezes, MJ; Gonçalves-Lopes, RM; Bastos, MS; Lima, NF; Barbosa, S; Gerber, AL; Loss de Morais, G; Berná, L; +5 more... Phelan, J; Robello, C; de Vasconcelos, ATR; Alves, JMP; Ferreira, MU; (2017) Genome-wide diversity and differentiation in New World populations of the human malaria parasite Plasmodium vivax. PLoS neglected tropical diseases, 11 (7). e0005824. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005824
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Kanji, A; Hasan, R; Ali, A; Zaver, A; Zhang, Y; Imtiaz, K; Shi, W; Clark, TG; McNerney, R; Phelan, J; +3 more... Rao, S; Shafiq, S; Hasan, Z; (2017) Single nucleotide polymorphisms in efflux pumps genes in extensively drug resistant Mycobacterium tuberculosis isolates from Pakistan. Tuberculosis (Edinburgh, Scotland), 107 (Supple). pp. 20-30. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2017.07.012 Full text not available from this repository.

Kanji, A; Hasan, R; Ali, A; Zaver, A; Zhang, Y; Imtiaz, K; Shi, W; Clark, TG; McNerney, R; Phelan, J; +3 more... Rao, S; Shafiq, S; Hasan, Z; (2017) Single nucleotide polymorphisms in efflux pumps genes in extensively drug resistant Mycobacterium tuberculosis isolates from Pakistan. Tuberculosis (Edinburgh, Scotland), 107. pp. 20-30. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2017.07.012
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Sengstake, S; Bergval, IL; Schuitema, AR; de Beer, JL; Phelan, J; de Zwaan, R; Clark, TG; van Soolingen, D; Anthony, RM; (2017) Pyrazinamide resistance-conferring mutations in pncA and the transmission of multidrug resistant TB in Georgia. BMC infectious diseases, 17. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2594-3
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This list was generated on Wed Jan 22 06:56:32 2020 GMT.