Items where Author is "Doyle, Ronan"

Year Item Type Full Text

Article

Co-causation of reduced newborn size by maternal undernutrition, infections, and inflammation. (2018) Ashorn, Per; Hallamaa, Lotta; Allen, Lindsay H; Ashorn, Ulla; Chandrasiri, Upeksha; Deitchler, Megan; Doyle, Ronan; Harjunmaa, Ulla; Jorgensen, Josh M; Kamiza, Steve; Klein, Nigel; Maleta, Kenneth; Nkhoma, Minyanga; Oaks, Brietta M; Poelman, Basho; Rogerson, Stephen J; Stewart, Christine P; Zeilani, Mamane; Dewey, Kathryn G

Evaluation of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Molecular Typing of Acinetobacter baumannii in Comparison with Orthogonal Methods. (2023) Busby, Eloise J; Doyle, Ronan M; Leboreiro Babe, Clara; Harris, Kathryn A; Mack, Damien; Méndez-Cervantes, Gema; O'Sullivan, Denise M; Pang, Vicky; Sadouki, Zahra; Solanki, Priya; Huggett, Jim F; McHugh, Timothy D; Wey, Emmanuel Q

Targeted DNA enrichment and whole genome sequencing of Neisseria meningitidis directly from clinical specimens. (2018) Clark, Stephen A; Doyle, Ronan; Lucidarme, Jay; Borrow, Ray; Breuer, Judith

Term and preterm labour are associated with distinct microbial community structures in placental membranes which are independent of mode of delivery. (2014) Doyle, RM; Alber, DG; Jones, HE; Harris, K; Fitzgerald, F; Peebles, D; Klein, N

Direct Whole-Genome Sequencing of Sputum Accurately Identifies Drug-Resistant Mycobacterium tuberculosis Faster than MGIT Culture Sequencing. (2018) Doyle, Ronan M; Burgess, Carrie; Williams, Rachel; Gorton, Rebecca; Booth, Helen; Brown, James; Bryant, Josephine M; Chan, Jackie; Creer, Dean; Holdstock, Jolyon; Kunst, Heinke; Lozewicz, Stefan; Platt, Gareth; Romero, Erika Yara; Speight, Graham; Tiberi, Simon; Abubakar, Ibrahim; Lipman, Marc; McHugh, Timothy D; Breuer, Judith

Bacterial communities found in placental tissues are associated with severe chorioamnionitis and adverse birth outcomes. (2017) Doyle, Ronan M; Harris, Kathryn; Kamiza, Steve; Harjunmaa, Ulla; Ashorn, Ulla; Nkhoma, Minyanga; Dewey, Kathryn G; Maleta, Kenneth; Ashorn, Per; Klein, Nigel

Bacterial communities found in placental tissues are associated with severe chorioamnionitis and adverse birth outcomes. (2017) Doyle, Ronan M; Harris, Kathryn; Kamiza, Steve; Harjunmaa, Ulla; Ashorn, Ulla; Nkhoma, Minyanga; Dewey, Kathryn G; Maleta, Kenneth; Ashorn, Per; Klein, Nigel

Ex Vivo Host Transcriptomics During Cryptococcus neoformans, Cryptococcus gattii, and Candida albicans Infection of Peripheral Blood Mononuclear Cells From South African Volunteers. (2024) Doyle, Ronan M; Kannambath, Shichina; Pittman, Alan; Goliath, Rene; Kumar, Vinod; Meintjes, Graeme; Milburn, James; Netea, Mihai G; Harrison, Thomas S; Jarvis, Joseph N; Bicanic, Tihana picture_as_pdf

Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study. (2020) Doyle, Ronan M; O'Sullivan, Denise M; Aller, Sean D; Bruchmann, Sebastian; Clark, Taane; Coello Pelegrin, Andreu; Cormican, Martin; Diez Benavente, Ernest; Ellington, Matthew J; McGrath, Elaine; Motro, Yair; Phuong Thuy Nguyen, Thi; Phelan, Jody; Shaw, Liam P; Stabler, Richard A; van Belkum, Alex; van Dorp, Lucy; Woodford, Neil; Moran-Gilad, Jacob; Huggett, Jim F; Harris, Kathryn A picture_as_pdf

Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: An inter-laboratory study. (2019) Doyle, Ronan M; O’Sullivan, Denise M; Aller, Sean D; Bruchmann, Sebastian; Clark, Taane; Pelegrin, Andreu Coello; Cormican, Martin; Benavente, Ernest Diez; Ellington, Matthew J; McGrath, Elaine; Motro, Yair; Thuy Nguyen, Thi Phuong; Phelan, Jody; Shaw, Liam P; Stabler, Richard A; van Belkum, Alex; van Dorp, Lucy; Woodford, Neil; Moran-Gilad, Jacob; Huggett, Jim F; Harris, Kathryn A

Cross-transmission Is Not the Source of New Mycobacterium abscessus Infections in a Multicenter Cohort of Cystic Fibrosis Patients. (2019) Doyle, Ronan M; Rubio, Marc; Dixon, Garth; Hartley, John; Klein, Nigel; Coll, Pere; Harris, Kathryn A

Cross-transmission is not the source of new<i>Mycobacterium abscessus</i>infections in a multi-centre cohort of cystic fibrosis patients. (2019) Doyle, Ronan M; Rubio, Marc; Dixon, Garth; Hartley, John; Klein, Nigel; Coll, Pere; Harris, Kathryn A

A Lactobacillus-Deficient Vaginal Microbiota Dominates Postpartum Women in Rural Malawi. (2018) Doyle, Ronan; Gondwe, Austridia; Fan, Yue-Mei; Maleta, Kenneth; Ashorn, Per; Klein, Nigel; Harris, Kathryn

Microbial Translocation Does Not Drive Immune Activation in Ugandan Children Infected With HIV. (2019) Fitzgerald, Felicity C; Lhomme, Edouard; Harris, Kathryn; Kenny, Julia; Doyle, Ronan; Kityo, Cissy; Shaw, Liam P; Abongomera, George; Musiime, Victor; Cook, Adrian; Brown, Julianne R; Brooks, Anthony; Owen-Powell, Ellen; Gibb, Diana M; Prendergast, Andrew J; Sarah Walker, A; Thiebaut, Rodolphe; Klein, Nigel; CHAPAS-3 Trial Team

Using 16s rRNA sequencing to characterize the microbiome of tropical cutaneous ulcer disease: insights into the microbial landscape and implications for diagnosis and treatment. (2024) Handley, Becca L; Sokana, Oliver; Addo, Kennedy Kwasi; Wagner, Josef; Fookes, María; Harding-Esch, Emma; Marks, Michael; Thomson, Nicholas R; Doyle, Ronan M

Periapical infection may affect birth outcomes via systemic inflammation. (2018) Harjunmaa, U; Doyle, R; Järnstedt, J; Kamiza, S; Jorgensen, JM; Stewart, CP; Shaw, L; Hallamaa, L; Ashorn, U; Klein, N; Dewey, KG; Maleta, K; Ashorn, P

Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans. (2020) Kannambath, Shichina; Jarvis, Joseph N; Wake, Rachel M; Longley, Nicky; Loyse, Angela; Matzaraki, Vicky; Aguirre-Gamboa, Raúl; Wijmenga, Cisca; Doyle, Ronan; Paximadis, Maria; Tiemessen, Caroline T; Kumar, Vinod; Pittman, Alan; Meintjes, Graeme; Harrison, Thomas S; Netea, Mihai G; Bicanic, Tihana

Enrichment of Clinically Relevant Organisms in Spontaneous Preterm-Delivered Placentas and Reagent Contamination across All Clinical Groups in a Large Pregnancy Cohort in the United Kingdom. (2018) Leon, Lydia J; Doyle, Ronan; Diez-Benavente, Ernest; Clark, Taane G; Klein, Nigel; Stanier, Philip; Moore, Gudrun E

Human Herpesvirus-6 Detection in Cerebrospinal Fluid on the BioFire FilmArray Meningitis/Encephalitis Panel in a High Human Immunodeficiency Virus-Prevalence African Setting. (2022) Milburn, James; Lechiile, Kwana; Siamisang, Keatlaretse; Williams, Christopher G; Owen, Leah; Gwakuba, Ezekiel; Machiya, Tichaona; Leeme, Tshepo; Barton, Hannah E; Doyle, Ronan; Tenforde, Mark W; Mine, Madisa; Goldfarb, David M; Mokomane, Margaret; Jarvis, Joseph N picture_as_pdf

The Impact of GeneXpert Cerebrospinal Fluid Testing on Tuberculous Meningitis Diagnosis in Routine Care in Botswana. (2024) Milburn, James; Ntwayagae, Ookeditse; Ngoni, Kebatshabile; Suresh, Rachita; Lemme, Neo; Northcott, Cassie; Penney, James; Kinsella, Matthew; Mechie, Imogen; Ensor, Samuel; Chebani, Tony; Grint, Daniel; Tenforde, Mark W; Avalos, Ava; Ramaabya, Dinah; Doyle, Ronan; Mokomane, Margaret; Mine, Madisa; Kranzer, Katharina; Jarvis, Joseph N picture_as_pdf

Rapid identification of a Mycobacterium tuberculosis full genetic drug resistance profile through whole genome sequencing directly from sputum. (2017) Nimmo, Camus; Doyle, Ronan; Burgess, Carrie; Williams, Rachel; Gorton, Rebecca; McHugh, Timothy D; Brown, Mike; Morris-Jones, Stephen; Booth, Helen; Breuer, Judith

Correction to: Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture. (2019) Nimmo, Camus; Shaw, Liam P; Doyle, Ronan; Williams, Rachel; Brien, Kayleen; Burgess, Carrie; Breuer, Judith; Balloux, Francois; Pym, Alexander S

Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture. (2019) Nimmo, Camus; Shaw, Liam P; Doyle, Ronan; Williams, Rachel; Brien, Kayleen; Burgess, Carrie; Breuer, Judith; Balloux, Francois; Pym, Alexander S

Whole genome sequencing <i>Mycobacterium tuberculosis</i> directly from sputum identifies more genetic diversity than sequencing from culture. (2018) Nimmo, Camus; Shaw, Liam P; Doyle, Ronan; Williams, Rachel; Brien, Kayleen; Burgess, Carrie; Breuer, Judith; Balloux, Francois; Pym, Alexander S

An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities. (2021) O'Sullivan, Denise M; Doyle, Ronan M; Temisak, Sasithon; Redshaw, Nicholas; Whale, Alexandra S; Logan, Grace; Huang, Jiabin; Fischer, Nicole; Amos, Gregory CA; Preston, Mark D; Marchesi, Julian R; Wagner, Josef; Parkhill, Julian; Motro, Yair; Denise, Hubert; Finn, Robert D; Harris, Kathryn A; Kay, Gemma L; O'Grady, Justin; Ransom-Jones, Emma; Wu, Huihai; Laing, Emma; Studholme, David J; Benavente, Ernest Diez; Phelan, Jody; Clark, Taane G; Moran-Gilad, Jacob; Huggett, Jim F

Chlamydia trachomatis Biovar L2 Infection in Women in South Africa. (2017) Peters, Remco PH; Doyle, Ronan; Redelinghuys, Mathys J; McIntyre, James A; Verjans, Georges M; Breuer, Judith; Kock, Marleen M

Whole-genome sequencing of Chlamydia trachomatis isolates from persistently infected patients. (2022) Pitt, Rachel; Doyle, Ronan; Theilgaard Christiansen, Mette; Horner, Paddy; Hathorn, Emma; Alexander, Sarah; Woodford, Neil; Cole, Michelle; Breuer, Judith

Children with cystic fibrosis are infected with multiple subpopulations of Mycobacterium abscessus with different antimicrobial resistance profiles. (2018) Shaw, Liam P; Doyle, Ronan M; Kavaliunaite, Ema; Spencer, Helen; Balloux, Francois; Dixon, Garth; Harris, Kathryn A

Children With Cystic Fibrosis Are Infected With Multiple Subpopulations of Mycobacterium abscessus With Different Antimicrobial Resistance Profiles. (2019) Shaw, Liam P; Doyle, Ronan M; Kavaliunaite, Ema; Spencer, Helen; Balloux, Francois; Dixon, Garth; Harris, Kathryn A

Distinguishing the Signals of Gingivitis and Periodontitis in Supragingival Plaque: a Cross-Sectional Cohort Study in Malawi. (2016) Shaw, Liam; Harjunmaa, Ulla; Doyle, Ronan; Mulewa, Simeon; Charlie, Davie; Maleta, Ken; Callard, Robin; Walker, A Sarah; Balloux, Francois; Ashorn, Per; Klein, Nigel

Impact of the Mk VI SkinSuit on skin microbiota of terrestrial volunteers and an International Space Station-bound astronaut. (2017) Stabler, Richard A; Rosado, Helena; Doyle, Ronan; Negus, David; Carvil, Philip A; Kristjánsson, Juan G; Green, David A; Franco-Cendejas, Rafael; Davies, Cadi; Mogensen, Andreas; Scott, Jonathan; Taylor, Peter W

Conference or Workshop Item

Presence of genital Chlamydia trachomatis serotype l2 infection in South African women. (2017) Peters, Remco; Redelinghuys, Mathys; Mcintyre, James; Doyle, Ronan; Verjans, Georges; Breuer, Judith; Kock, Marleen

Thesis

Strategies to improve diagnosis of central nervous system infections in high HIV-prevalence African settings. (2024) Milburn, J E