Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021.

Nicholas Bbosa ORCID logo ; Deogratius Ssemwanga ; Hamidah Namagembe ; Ronald Kiiza ; Jocelyn Kiconco ; John Kayiwa ; Tom Lutalo ; Julius Lutwama ; Alfred Ssekagiri ; Isaac Ssewanyana ; +13 more... Susan Nabadda ; Henry Kyobe-Bbosa ; Jennifer Giandhari ; Sureshnee Pillay ; Upasana Ramphal ; Yajna Ramphal ; Yeshnee Naidoo ; Derek Tshiabuila ; Houriiyah Tegally ; Emmanuel J San ; Eduan Wilkinson ; Tulio de Oliveira ; Pontiano Kaleebu ORCID logo ; (2022) Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021. EMERGING INFECTIOUS DISEASES, 28 (5). pp. 1021-1025. ISSN 1080-6040 DOI: 10.3201/eid2805.220121
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Genomic surveillance in Uganda showed rapid replacement of severe acute respiratory syndrome coronavirus 2 over time by variants, dominated by Delta. However, detection of the more transmissible Omicron variant among travelers and increasing community transmission highlight the need for near-real-time genomic surveillance and adherence to infection control measures to prevent future pandemic waves.


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