Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021.

Bbosa, NORCID logo; Ssemwanga, D; Namagembe, H; Kiiza, R; Kiconco, J; Kayiwa, J; Lutalo, T; Lutwama, J; Ssekagiri, A; Ssewanyana, I; +13 more...Nabadda, S; Kyobe-Bbosa, H; Giandhari, J; Pillay, S; Ramphal, U; Ramphal, Y; Naidoo, Y; Tshiabuila, D; Tegally, H; San, EJ; Wilkinson, E; de Oliveira, T; Kaleebu, PORCID logo and (2022) Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021. EMERGING INFECTIOUS DISEASES, 28 (5). pp. 1021-1025. ISSN 1080-6040 DOI: 10.3201/eid2805.220121
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Genomic surveillance in Uganda showed rapid replacement of severe acute respiratory syndrome coronavirus 2 over time by variants, dominated by Delta. However, detection of the more transmissible Omicron variant among travelers and increasing community transmission highlight the need for near-real-time genomic surveillance and adherence to infection control measures to prevent future pandemic waves.


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