Items where Author or Contributor is "Bbosa, Nicholas"
Up a level |
Number of items: 13.
2022
Bbosa, Nicholas;
Ssemwanga, Deogratius;
Namagembe, Hamidah;
Kiiza, Ronald;
Kiconco, Jocelyn;
Kayiwa, John;
Lutalo, Tom;
Lutwama, Julius;
Ssekagiri, Alfred;
Ssewanyana, Isaac;
+13 more...
Nabadda, Susan;
Kyobe-Bbosa, Henry;
Giandhari, Jennifer;
Pillay, Sureshnee;
Ramphal, Upasana;
Ramphal, Yajna;
Naidoo, Yeshnee;
Tshiabuila, Derek;
Tegally, Houriiyah;
San, Emmanuel J;
Wilkinson, Eduan;
de Oliveira, Tulio;
Kaleebu, Pontiano;
(2022)
Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021.
EMERGING INFECTIOUS DISEASES, 28 (5).
pp. 1021-1025.
ISSN 1080-6040
DOI: https://doi.org/10.3201/eid2805.220121
Omooja, Jonah;
Bbosa, Nicholas;
Lule, Dan Bugembe;
Nannyonjo, Maria;
Lunkuse, Sandra;
Nassolo, Faridah;
Nabirye, Stella Esther;
Suubi, Hamidah Namagembe;
Kaleebu, Pontiano;
Ssemwanga, Deogratius;
(2022)
HIV-1 drug resistance genotyping success rates and correlates of Dried-blood spots and plasma specimen genotyping failure in a resource-limited setting.
BMC Infectious Diseases, 22 (1).
474-.
ISSN 1471-2334
DOI: https://doi.org/10.1186/s12879-022-07453-9
Ssekagiri, Alfred;
Jjingo, Daudi;
Lujumba, Ibra;
Bbosa, Nicholas;
Bugembe, Daniel L;
Kateete, David P;
Jordan, I King;
Kaleebu, Pontiano;
Ssemwanga, Deogratius;
(2022)
QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data.
Bioinformatics advances, 2 (1).
vbac089.
ISSN 2635-0041
DOI: https://doi.org/10.1093/bioadv/vbac089
2021
Bbosa, Nicholas;
Ssemwanga, Deogratius;
Nsubuga, Rebecca N;
Kiwanuka, Noah;
Bagaya, Bernard S;
Kitayimbwa, John M;
Ssekagiri, Alfred;
Yebra, Gonzalo;
Kaleebu, Pontiano;
Leigh-Brown, Andrew;
(2021)
Phylogenetic Networks and Parameters Inferred from HIV Nucleotide Sequences of High-Risk and General Population Groups in Uganda: Implications for Epidemic Control.
Viruses, 13 (6).
p. 970.
ISSN 1999-4915
DOI: https://doi.org/10.3390/v13060970
Kayondo, Hassan W;
Ssekagiri, Alfred;
Nabakooza, Grace;
Bbosa, Nicholas;
Ssemwanga, Deogratius;
Kaleebu, Pontiano;
Mwalili, Samuel;
Mango, John M;
Leigh Brown, Andrew J;
Saenz, Roberto A;
+2 more...
Galiwango, Ronald;
Kitayimbwa, John M;
(2021)
Employing phylogenetic tree shape statistics to resolve the underlying host population structure.
BMC bioinformatics, 22 (1).
546-.
ISSN 1471-2105
DOI: https://doi.org/10.1186/s12859-021-04465-1
2020
Bbosa, Nicholas;
Ssemwanga, Deogratius;
Kaleebu, Pontiano;
(2020)
Short Communication: Choosing the Right Program for the Identification of HIV-1 Transmission Networks from Nucleotide Sequences Sampled from Different Populations.
AIDS research and human retroviruses, 36 (11).
pp. 948-951.
ISSN 0889-2229
DOI: https://doi.org/10.1089/AID.2020.0033
Bbosa, Nicholas;
Ssemwanga, Deogratius;
Ssekagiri, Alfred;
Xi, Xiaoyue;
Mayanja, Yunia;
Bahemuka, Ubaldo;
Seeley, Janet;
Pillay, Deenan;
Abeler-Dörner, Lucie;
Golubchik, Tanya;
+3 more...
Fraser, Christophe;
Kaleebu, Pontiano;
Ratmann, Oliver;
(2020)
Phylogenetic and Demographic Characterization of Directed HIV-1 Transmission Using Deep Sequences from High-Risk and General Population Cohorts/Groups in Uganda.
Viruses, 12 (3).
p. 331.
DOI: https://doi.org/10.3390/v12030331
Grant, Heather E;
Hodcroft, Emma B;
Ssemwanga, Deogratius;
Kitayimbwa, John M;
Yebra, Gonzalo;
Esquivel Gomez, Luis Roger;
Frampton, Dan;
Gall, Astrid;
Kellam, Paul;
de Oliveira, Tulio;
+12 more...
Bbosa, Nicholas;
Nsubuga, Rebecca N;
Kibengo, Freddie;
Kwan, Tsz Ho;
Lycett, Samantha;
Kao, Rowland;
Robertson, David L;
Ratmann, Oliver;
Fraser, Christophe;
Pillay, Deenan;
Kaleebu, Pontiano;
Leigh Brown, Andrew J;
(2020)
Pervasive and non-random recombination in near full-length HIV genomes from Uganda.
Virus evolution, 6 (1).
veaa004-.
ISSN 2057-1577
DOI: https://doi.org/10.1093/ve/veaa004
Segujja, Farouk;
Omooja, Jonah;
Lunkuse, Sandra;
Nanyonjo, Maria;
Nabirye, Stella E;
Nassolo, Faridah;
Bugembe, Daniel L;
Bbosa, Nicholas;
Kateete, David P;
Ssenyonga, William;
+5 more...
Mayanja, Yunia;
Nsubuga, Rebecca N;
Seeley, Janet;
Kaleebu, Pontiano;
Ssemwanga, Deogratius;
(2020)
High Levels of Acquired HIV Drug Resistance Following Virological Nonsuppression in HIV-Infected Women from a High-Risk Cohort in Uganda.
AIDS research and human retroviruses, 36 (9).
pp. 782-791.
ISSN 0889-2229
DOI: https://doi.org/10.1089/AID.2019.0279
Ssemwanga, Deogratius;
Bbosa, Nicholas;
Nsubuga, Rebecca N;
Ssekagiri, Alfred;
Kapaata, Anne;
Nannyonjo, Maria;
Nassolo, Faridah;
Karabarinde, Alex;
Mugisha, Joseph;
Seeley, Janet;
+3 more...
Yebra, Gonzalo;
Leigh Brown, Andrew;
Kaleebu, Pontiano;
(2020)
The Molecular Epidemiology and Transmission Dynamics of HIV Type 1 in a General Population Cohort in Uganda.
Viruses, 12 (11).
p. 1283.
DOI: https://doi.org/10.3390/v12111283
2019
Bbosa, Nicholas;
Kaleebu, Pontiano;
Ssemwanga, Deogratius;
(2019)
HIV subtype diversity worldwide.
Current opinion in HIV and AIDS, 14 (3).
pp. 153-160.
ISSN 1746-630X
DOI: https://doi.org/10.1097/COH.0000000000000534
Bbosa, Nicholas;
Ssemwanga, Deogratius;
Nsubuga, Rebecca N;
Salazar-Gonzalez, Jesus F;
Salazar, Maria G;
Nanyonjo, Maria;
Kuteesa, Monica;
Seeley, Janet;
Kiwanuka, Noah;
Bagaya, Bernard S;
+3 more...
Yebra, Gonzalo;
Leigh-Brown, Andrew;
Kaleebu, Pontiano;
(2019)
Phylogeography of HIV-1 suggests that Ugandan fishing communities are a sink for, not a source of, virus from general populations.
Scientific reports, 9 (1).
1051-.
ISSN 2045-2322
DOI: https://doi.org/10.1038/s41598-018-37458-x
Omooja, Jonah;
Nannyonjo, Maria;
Sanyu, Grace;
Nabirye, Stella E;
Nassolo, Faridah;
Lunkuse, Sandra;
Kapaata, Anne;
Segujja, Farouk;
Kateete, David Patrick;
Ssebaggala, Eric;
+5 more...
Bbosa, Nicholas;
Aling, Emmanuel;
Nsubuga, Rebecca N;
Kaleebu, Pontiano;
Ssemwanga, Deogratius;
(2019)
Rates of HIV-1 virological suppression and patterns of acquired drug resistance among fisherfolk on first-line antiretroviral therapy in Uganda.
The Journal of antimicrobial chemotherapy, 74 (10).
pp. 3021-3029.
ISSN 0305-7453
DOI: https://doi.org/10.1093/jac/dkz261