LSHTM Research Online

Chang, HH; Worby, CJ; Yeka, A; Nankabirwa, J; Kamya, MR; Staedke, SG; Dorsey, G; Murphy, M; Neafsey, DE; Jeffreys, AE; +6 more... (2017) THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites. PLoS computational biology, 13 (1). e1005348. ISSN 1553-734X DOI: 10.1371/journal.pcbi.1005348

Andrianakis, I; Vernon, IR; McCreesh, N; McKinley, TJ; Oakley, JE; Nsubuga, RN; Goldstein, M; White, RG; (2015) Bayesian History Matching of Complex Infectious Disease Models Using Emulation: A Tutorial and a Case Study on HIV in Uganda. PLoS computational biology, 11 (1). e1003968. ISSN 1553-734X DOI: 10.1371/journal.pcbi.1003968

Flasche, S; Le Polain de Waroux, O; OBrien, KL; Edmunds, WJ; (2015) The Serotype Distribution among Healthy Carriers before Vaccination Is Essential for Predicting the Impact of Pneumococcal Conjugate Vaccine on Invasive Disease. PLoS computational biology, 11 (4). e1004173. ISSN 1553-734X DOI: 10.1371/journal.pcbi.1004173

Kucharski, AJ; Edmunds, WJ; (2015) Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks. PLoS computational biology, 11 (4). e1004154. ISSN 1553-734X DOI: 10.1371/journal.pcbi.1004154

Tyagi, N; Farnell, EJ; Fitzsimmons, CM; Ryan, S; Tukahebwa, E; Maizels, RM; Dunne, DW; Thornton, JM; Furnham, N; (2015) Comparisons of Allergenic and Metazoan Parasite Proteins: Allergy the Price of Immunity. PLoS computational biology, 11 (10). e1004546. ISSN 1553-734X DOI: 10.1371/journal.pcbi.1004546

Seoane, JA; Campbell, C; Day, IN; Casas, JP; Gaunt, TR; (2014) Canonical correlation analysis for gene-based pleiotropy discovery. PLoS computational biology, 10 (10). e1003876. ISSN 1553-734X DOI: 10.1371/journal.pcbi.1003876

Funk, S; Nishiura, H; Heesterbeek, H; Edmunds, WJ; Checchi, F; (2013) Identifying transmission cycles at the human-animal interface: the role of animal reservoirs in maintaining gambiense human african trypanosomiasis. PLoS computational biology, 9 (1). e1002855. ISSN 1553-734X DOI: 10.1371/journal.pcbi.1002855

Eames, KT; Tilston, NL; Brooks-Pollock, E; Edmunds, WJ; (2012) Measured Dynamic Social Contact Patterns Explain the Spread of H1N1v Influenza. PLoS computational biology, 8 (3). e1002425. ISSN 1553-734X DOI: 10.1371/journal.pcbi.1002425

Furnham, N; Sillitoe, I; Holliday, GL; Cuff, AL; Laskowski, RA; Orengo, CA; Thornton, JM; (2012) Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies. PLoS computational biology, 8 (3). e1002403. ISSN 1553-734X DOI: 10.1371/journal.pcbi.1002403

Kucharski, AJ; Gog, JR; (2012) The role of social contacts and original antigenic sin in shaping the age pattern of immunity to seasonal influenza. PLoS computational biology, 8 (10). e1002741. ISSN 1553-734X DOI: 10.1371/journal.pcbi.1002741

Mitchell, KM; Mutapi, F; Savill, NJ; Woolhouse, ME; (2011) Explaining observed infection and antibody age-profiles in populations with urogenital schistosomiasis. PLoS computational biology, 7 (10). e1002237. ISSN 1553-734X DOI: 10.1371/journal.pcbi.1002237

Laneri, K; Bhadra, A; Ionides, EL; Bouma, M; Dhiman, RC; Yadav, RS; Pascual, M; (2010) Forcing Versus Feedback: Epidemic Malaria and Monsoon Rains in Northwest India. PLoS computational biology, 6 (9). ISSN 1553-734X DOI: 10.1371/journal.pcbi.1000898

Walker, PG; Cauchemez, S; Metras, R; Dung, doH; Pfeiffer, D; Ghani, AC; (2010) A Bayesian approach to quantifying the effects of mass poultry vaccination upon the spatial and temporal dynamics of H5N1 in Northern Vietnam. PLoS computational biology, 6 (2). e1000683. ISSN 1553-734X DOI: 10.1371/journal.pcbi.1000683

Filipe, JA; Riley, EM; Drakeley, CJ; Sutherland, CJ; Ghani, AC; (2007) Determination of the processes driving the acquisition of immunity to malaria using a mathematical transmission model. PLoS computational biology, 3 (12). e255. ISSN 1553-734X DOI: 10.1371/journal.pcbi.0030255