Year Item Type Full Text

Bibliographic data only

Cost-Effectiveness of Pertussis Vaccination During Pregnancy in the United States. (2016) Atkins, Katherine E; Fitzpatrick, Meagan C; Galvani, Alison P; Townsend, Jeffrey P

Use of mathematical modelling to assess the impact of vaccines on antibiotic resistance. (2017) Atkins, Katherine E; Lafferty, Erin I; Deeny, Sarah R; Davies, Nicholas G; Robotham, Julie V; Jit, Mark

Can antibiotic resistance be reduced by vaccinating against respiratory disease? (2018) Atkins, Katherine E; Lipsitch, Marc

Strategies for containing Ebola in West Africa. (2014) Pandey, Abhishek; Atkins, Katherine E; Medlock, Jan; Wenzel, Natasha; Townsend, Jeffrey P; Childs, James E; Nyenswah, Tolbert G; Ndeffo-Mbah, Martial L; Galvani, Alison P

Cross-Cultural Household Influence on Vaccination Decisions. (2015) Taylor, Eric; Atkins, Katherine E; Medlock, Jan; Li, Meng; Chapman, Gretchen B; Galvani, Alison P

Public

Vaccination to reduce antimicrobial resistance. (2017) Atkins, Katherine E; Flasche, Stefan

Vaccination of Older Adults Against Respiratory Syncytial Virus: The Final Pieces of the Puzzle. (2023) Atkins, Katherine E; Hodgson, David

Evaluating the impact of Respiratory Syncytial Virus immunisation strategies on antibiotic use and drug resistant bacterial infections in England. (2022) Atkins, Katherine E; Hodgson, David; Jit, Mark; Davies, Nicholas G

Retrospective Analysis of the 2014-2015 Ebola Epidemic in Liberia. (2016) Atkins, Katherine E; Pandey, Abhishek; Wenzel, Natasha S; Skrip, Laura; Yamin, Dan; Nyenswah, Tolbert G; Fallah, Mosoka; Bawo, Luke; Medlock, Jan; Altice, Frederick L; Townsend, Jeffrey; Ndeffo-Mbah, Martial L; Galvani, Alison P

Under-reporting and case fatality estimates for emerging epidemics. (2015) Atkins, Katherine E; Wenzel, Natasha S; Ndeffo-Mbah, Martial; Altice, Frederick L; Townsend, Jeffrey P; Galvani, Alison P html

Seasonal influenza vaccination delivery through community pharmacists in England: evaluation of the London pilot. (2016) Atkins, Katherine; van Hoek, Albert Jan; Watson, Conall; Baguelin, Marc; Choga, Lethiwe; Patel, Anika; Raj, Thara; Jit, Mark; Griffiths, Ulla

SCoVMod – a spatially explicit mobility and deprivation adjusted model of first wave COVID-19 transmission dynamics. (2022) Banks, Christopher J; Colman, Ewan; Doherty, Thomas; Tearne, Oliver; Arnold, Mark; Atkins, Katherine E; Balaz, Daniel; Beaunée, Gaël; Bessell, Paul R; Enright, Jessica; Kleczkowski, Adam; Rossi, Gianluigi; Ruget, Anne-Sophie; Kao, Rowland R

Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis. (2023) Baxter, James; Langhorne, Sarah; Shi, Ting; Tully, Damien C; Villabona-Arenas, Ch Julián; Hué, Stéphane; Albert, Jan; Leigh Brown, Andrew; Atkins, Katherine E

Reconciling founder variant multiplicity of HIV-1 infection with the rate of CD4+ decline. (2024) Baxter, James; Villabona-Arenas, Ch Julián; Thompson, Robin N; Hué, Stéphane; Regoes, Roland R; Kouyos, Roger D; Günthard, Huldrych F; Albert, Jan; Leigh Brown, Andrew; Atkins, Katherine E

Drug resistance mutations in HIV: new bioinformatics approaches and challenges. (2021) Blassel, Luc; Zhukova, Anna; Villabona-Arenas, Christian J; Atkins, Katherine E; Hué, Stéphane; Gascuel, Olivier

Cholera epidemic in Yemen, 2016-18: an analysis of surveillance data. (2018) Camacho, Anton; Bouhenia, Malika; Alyusfi, Reema; Alkohlani, Abdulhakeem; Naji, Munna Abdulla Mohammed; de Radiguès, Xavier; Abubakar, Abdinasir M; Almoalmi, Abdulkareem; Seguin, Caroline; Sagrado, Maria Jose; Poncin, Marc; McRae, Melissa; Musoke, Mohammed; Rakesh, Ankur; Porten, Klaudia; Haskew, Christopher; Atkins, Katherine E; Eggo, Rosalind M; Azman, Andrew S; Broekhuijsen, Marije; Saatcioglu, Mehmet Akif; Pezzoli, Lorenzo; Quilici, Marie-Laure; Al-Mesbahy, Abdul Rahman; Zagaria, Nevio; Luquero, Francisco J

Resolving the apparent transmission paradox of African sleeping sickness. (2018) Capewell, Paul; Atkins, Katie; Weir, William; Jamonneau, Vincent; Camara, Mamadou; Clucas, Caroline; Swar, Nono-Raymond K; Ngoyi, Dieudonne M; Rotureau, Brice; Garside, Paul; Galvani, Alison P; Bucheton, Bruno; MacLeod, Annette

Effect of Pediatric Influenza Vaccination on Antibiotic Resistance, England and Wales. (2020) Chae, Chungman; Davies, Nicholas G; Jit, Mark; Atkins, Katherine E

The 2013-2016 Ebola epidemic: multidisciplinary success conceals a missed opportunity. (2017) Coltart, Cordelia EM; Edmunds, W John; Atkins, Katherine E

Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. (2021) Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; CMMID COVID-19 Working Group; COVID-19 Genomics UK (COG-UK) Consortium; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John

Modeling the effect of vaccination on selection for antibiotic resistance in Streptococcus pneumonia e. (2021) Davies, Nicholas G; Flasche, Stefan; Jit, Mark; Atkins, Katherine E

Within-host dynamics shape antibiotic resistance in commensal bacteria. (2018) Davies, Nicholas G; Flasche, Stefan; Jit, Mark; Atkins, Katherine E

Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. (2022) Endo 遠藤彰, Akira; CMMID COVID-19 Working Group; Uchida 内田満夫, Mitsuo; Liu 刘扬, Yang; Atkins, Katherine E; Kucharski, Adam J; Funk, Sebastian

Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. (2020) Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J

Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. (2020) Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J

Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. (2021) Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J

Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan. (2021) Endo, Akira; Uchida, Mitsuo; Hayashi, Naoki; Liu, Yang; Atkins, Katherine E; Kucharski, Adam J; Funk, Sebastian

Cost-effectiveness of next-generation vaccines: The case of pertussis. (2016) Fitzpatrick, Meagan C; Wenzel, Natasha S; Scarpino, Samuel V; Althouse, Benjamin M; Atkins, Katherine E; Galvani, Alison P; Townsend, Jeffrey P

Balancing Benefits and Risks of Antibiotic Use. (2018) Flasche, Stefan; Atkins, Katherine E

Estimates for quality of life loss due to Respiratory Syncytial Virus. (2019) Hodgson, David; Atkins, Katherine E; Baguelin, Marc; Panovska-Griffiths, Jasmina; Thorrington, Dominic; van Hoek, Albert Jan; Zhao, Hongxin; Fragaszy, Ellen; Hayward, Andrew C; Pebody, Richard

Effect of mass paediatric influenza vaccination on existing influenza vaccination programmes in England and Wales: a modelling and cost-effectiveness analysis. (2017) Hodgson, David; Baguelin, Marc; van Leeuwen, Edwin; Panovska-Griffiths, Jasmina; Ramsay, Mary; Pebody, Richard; Atkins, Katherine E

Optimal Respiratory Syncytial Virus intervention programmes using Nirsevimab in England and Wales. (2022) Hodgson, David; Koltai, Mihaly; Krauer, Fabienne; Flasche, Stefan; Jit, Mark; Atkins, Katherine E

Evaluating the next generation of RSV intervention strategies: a mathematical modelling study and cost-effectiveness analysis. (2020) Hodgson, David; Pebody, Richard; Panovska-Griffiths, Jasmina; Baguelin, Marc; Atkins, Katherine E

Protecting infants against RSV disease: an impact and cost-effectiveness comparison of long-acting monoclonal antibodies and maternal vaccination. (2024) Hodgson, David; Wilkins, Neil; van Leeuwen, Edwin; Watson, Conall H; Crofts, Jonathan; Flasche, Stefan; Jit, Mark; Atkins, Katherine E

Quantitative analyses and modelling to support achievement of the 2020 goals for nine neglected tropical diseases. (2015) Hollingsworth, T Déirdre; Adams, Emily R; Anderson, Roy M; Atkins, Katherine; Bartsch, Sarah; Basáñez, María-Gloria; Behrend, Matthew; Blok, David J; Chapman, Lloyd AC; Coffeng, Luc; Courtenay, Orin; Crump, Ron E; de Vlas, Sake J; Dobson, Andy; Dyson, Louise; Farkas, Hajnal; Galvani, Alison P; Gambhir, Manoj; Gurarie, David; Irvine, Michael A; Jervis, Sarah; Keeling, Matt J; Kelly-Hope, Louise; King, Charles; Lee, Bruce Y; Le Rutte, Epke A; Lietman, Thomas M; Ndeffo-Mbah, Martial; Medley, Graham F; Michael, Edwin; Pandey, Abhishek; Peterson, Jennifer K; Pinsent, Amy; Porco, Travis C; Richardus, Jan Hendrik; Reimer, Lisa; Rock, Kat S; Singh, Brajendra K; Stolk, Wilma; Swaminathan, Subramanian; Torr, Steve J; Townsend, Jeffrey; Truscott, James; Walker, Martin; Zoueva, Alexandra; NTD Modelling Consortium

Social contacts, vaccination decisions and influenza in Japan. (2015) Ibuka, Yoko; Ohkusa, Yasushi; Sugawara, Tamie; Chapman, Gretchen B; Yamin, Dan; Atkins, Katherine E; Taniguchi, Kiyosu; Okabe, Nobuhiko; Galvani, Alison P

Quantifying the economic cost of antibiotic resistance and the impact of related interventions: rapid methodological review, conceptual framework and recommendations for future studies. (2020) Jit, Mark; Ng, Dorothy Hui Lin; Luangasanatip, Nantasit; Sandmann, Frank; Atkins, Katherine E; Robotham, Julie V; Pouwels, Koen B

Mathematical modelling for antibiotic resistance control policy: do we know enough? (2019) Knight, Gwenan M; Davies, Nicholas G; Colijn, Caroline; Coll, Francesc; Donker, Tjibbe; Gifford, Danna R; Glover, Rebecca E; Jit, Mark; Klemm, Elizabeth; Lehtinen, Sonja; Lindsay, Jodi A; Lipsitch, Marc; Llewelyn, Martin J; Mateus, Ana LP; Robotham, Julie V; Sharland, Mike; Stekel, Dov; Yakob, Laith; Atkins, Katherine E

Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England. (2021) Leclerc, Quentin J; Fuller, Naomi M; Keogh, Ruth H; Diaz-Ordaz, Karla; Sekula, Richard; Semple, Malcolm G; ISARIC4C Investigators; CMMID COVID-19 Working Group; Atkins, Katherine E; Procter, Simon R; Knight, Gwenan M

Stimulating Influenza Vaccination via Prosocial Motives. (2016) Li, Meng; Taylor, Eric G; Atkins, Katherine E; Chapman, Gretchen B; Galvani, Alison P

Respiratory syncytial virus seasonality and prevention strategy planning for passive immunisation of infants in low-income and middle-income countries: a modelling study. (2021) Li, You; Hodgson, David; Wang, Xin; Atkins, Katherine E; Feikin, Daniel R; Nair, Harish

Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves. (2022) Lindsey, Benjamin B; Villabona-Arenas, Ch Julián; Campbell, Finlay; Keeley, Alexander J; Parker, Matthew D; Shah, Dhruv R; Parsons, Helena; Zhang, Peijun; Kakkar, Nishchay; Gallis, Marta; Foulkes, Benjamin H; Wolverson, Paige; Louka, Stavroula F; Christou, Stella; State, Amy; Johnson, Katie; Raza, Mohammad; Hsu, Sharon; Jombart, Thibaut; Cori, Anne; Sheffield COVID-19 Genomics Group; COVID-19 Genomics UK (COG-UK) consortium; CMMID COVID-19 working group; Evans, Cariad M; Partridge, David G; Atkins, Katherine E; Hué, Stéphane; de Silva, Thushan I

Quantifying the public's view on social value judgments in vaccine decision-making: A discrete choice experiment. (2019) Luyten, Jeroen; Kessels, Roselinde; Atkins, Katherine E; Jit, Mark; van Hoek, Albert Jan

The Impact of Social Groups on Variation in Infectious Disease Transmission and Control. (2021) Munday, JD

Estimating the risk and spatial spread of measles in populations with high MMR uptake: Using school-household networks to understand the 2013 to 2014 outbreak in the Netherlands. (2024) Munday, James D; Atkins, Katherine E; Klinkenberg, Don; Meurs, Marc; Fleur, Erik; Hahné, Susan Jm; Wallinga, Jacco; Jan van Hoek, Albert

Changing socio-economic and ethnic disparities in influenza/A/H1N1 infection early in the 2009 UK epidemic: a descriptive analysis. (2021) Munday, James D; Pebody, Richard; Atkins, Katherine E; van Hoek, Albert Jan

Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in England. (2021) Munday, James D; Sherratt, Katharine; Meakin, Sophie; Endo, Akira; Pearson, Carl AB; Hellewell, Joel; Abbott, Sam; Bosse, Nikos I; CMMID COVID-19 Working Group; Atkins, Katherine E; Wallinga, Jacco; Edmunds, W John; van Hoek, Albert Jan; Funk, Sebastian

Quantifying the impact of social groups and vaccination on inequalities in infectious diseases using a mathematical model. (2018) Munday, James D; van Hoek, Albert Jan; Edmunds, W John; Atkins, Katherine E

The impact of vector migration on the effectiveness of strategies to control gambiense human African trypanosomiasis. (2019) Ndeffo-Mbah, Martial L; Pandey, Abhishek; Atkins, Katherine E; Aksoy, Serap; Galvani, Alison P

Evaluating long-term effectiveness of sleeping sickness control measures in Guinea. (2015) Pandey, Abhishek; Atkins, Katherine E; Bucheton, Bruno; Camara, Mamadou; Aksoy, Serap; Galvani, Alison P; Ndeffo-Mbah, Martial L

Preface: 'The 2013-2016 West African Ebola epidemic: data, decision-making and disease control'. (2017) Piot, Peter; Coltart, Cordelia EM; Atkins, Katherine E

Direct and indirect effects of rotavirus vaccination: comparing predictions from transmission dynamic models. (2012) Pitzer, Virginia E; Atkins, Katherine E; de Blasio, Birgitte Freiesleben; Van Effelterre, Thierry; Atchison, Christina J; Harris, John P; Shim, Eunha; Galvani, Alison P; Edmunds, W John; Viboud, Cécile; Patel, Manish M; Grenfell, Bryan T; Parashar, Umesh D; Lopman, Ben A

Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa. (2022) Pujol-Hodge, Emma; Salazar-Gonzalez, Jesus F; Ssemwanga, Deogratius; Charlebois, Edwin D; Ayieko, James; Grant, Heather E; Liegler, Teri; Atkins, Katherine E; Kaleebu, Pontiano; Kamya, Moses R; Petersen, Maya; Havlir, Diane V; Leigh Brown, Andrew J

Data-driven models to predict the elimination of sleeping sickness in former Equateur province of DRC. (2017) Rock, KS; Pandey, A; Ndeffo-Mbah, ML; Atkins, KE; Lumbala, C; Galvani, A; Keeling, MJ

Assessing Strategies Against Gambiense Sleeping Sickness Through Mathematical Modeling. (2018) Rock, Kat S; Ndeffo-Mbah, Martial L; Castaño, Soledad; Palmer, Cody; Pandey, Abhishek; Atkins, Katherine E; Ndung'u, Joseph M; Hollingsworth, T Déirdre; Galvani, Alison; Bever, Caitlin; Chitnis, Nakul; Keeling, Matt J

Impact of the national rotavirus vaccination programme on acute gastroenteritis in England and associated costs averted. (2016) Thomas, Sara L; Walker, Jemma L; Fenty, Justin; Atkins, Katherine E; Elliot, Alex J; Hughes, Helen E; Stowe, Julia; Ladhani, Shamez; Andrews, Nick J

Number of HIV-1 founder variants is determined by the recency of the source partner infection. (2020) Villabona-Arenas, Ch Julián; Hall, Matthew; Lythgoe, Katrina A; Gaffney, Stephen G; Regoes, Roland R; Hué, Stéphane; Atkins, Katherine E

Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs. (2022) Villabona-Arenas, Christian Julian; Hué, Stéphane; Baxter, James AC; Hall, Matthew; Lythgoe, Katrina A; Bradley, John; Atkins, Katherine E

Harnessing case isolation and ring vaccination to control Ebola. (2015) Wells, Chad; Yamin, Dan; Ndeffo-Mbah, Martial L; Wenzel, Natasha; Gaffney, Stephen G; Townsend, Jeffrey P; Meyers, Lauren Ancel; Fallah, Mosoka; Nyenswah, Tolbert G; Altice, Frederick L; Atkins, Katherine E; Galvani, Alison P

Acquisition of extended-spectrum beta-lactamase-producing Enterobacteriaceae (ESBL-PE) carriage after exposure to systemic antimicrobials during travel: Systematic review and meta-analysis. (2020) Wuerz, Terence C; Kassim, Sameer S; Atkins, Katherine E

Cost-Effectiveness of Rotavirus Vaccination in France-Accounting for Indirect Protection. (2016) Yamin, Dan; Atkins, Katherine E; Remy, Vanessa; Galvani, Alison P

Cost-effectiveness of introducing national seasonal influenza vaccination for adults aged 60 years and above in mainland China: a modelling analysis. (2020) Yang, Juan; Atkins, Katherine E; Feng, Luzhao; Baguelin, Marc; Wu, Peng; Yan, Han; Lau, Eric HY; Wu, Joseph T; Liu, Yang; Cowling, Benjamin J; Jit, Mark; Yu, Hongjie

Seasonal influenza vaccination in China: Landscape of diverse regional reimbursement policy, and budget impact analysis. (2016) Yang, Juan; Atkins, Katherine E; Feng, Luzhao; Pang, Mingfan; Zheng, Yaming; Liu, Xinxin; Cowling, Benjamin J; Yu, Hongjie

Restricted

Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. (2020) Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John picture_as_pdf