Items where Author is "Holt, KE"
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Number of items: 82.
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Teo, SM;
Tang, HHF;
Mok, D;
Judd, LM;
Watts, SC;
Pham, K;
Holt, BJ;
Kusel, M;
Serralha, M;
Troy, N;
+9 more...
Bochkov, YA;
Grindle, K;
Lemanske, RFJr;
Johnston, SL;
Gern, JE;
Sly, PD;
Holt, PG;
Holt, KE;
Inouye, M;
(2018)
Airway Microbiota Dynamics Uncover a Critical Window for Interplay of Pathogenic Bacteria and Allergy in Childhood Respiratory Disease.
Technical Report.
Elsevier (Cell Press).
DOI: https://doi.org/10.1016/j.chom.2018.08.005
Full text not available from this repository.
Public
Baines, Sarah L;
Holt, Kathryn E;
Schultz, Mark B;
Seemann, Torsten;
Howden, Brian O;
Jensen, Slade O;
van Hal, Sebastiaan J;
Coombs, Geoffrey W;
Firth, Neville;
Powell, David R;
+2 more...
Stinear, Timothy P;
Howden, Benjamin P;
(2015)
Convergent Adaptation in the Dominant Global Hospital Clone ST239 of Methicillin-Resistant Staphylococcus aureus.
MBIO, 6 (2).
ISSN 2150-7511
DOI: https://doi.org/10.1128/mBio.00080-15
Baker, Stephen;
Holt, Kathryn;
Whitehead, Sally;
Goodhead, Ian;
Perkins, Tim;
Stocker, Bruce;
Hardy, Jonathan;
Dougan, Gordon;
(2007)
A linear plasmid truncation induces unidirectional flagellar phase change in H : z66 positive Salmonella Typhi.
MOLECULAR MICROBIOLOGY, 66 (5).
pp. 1207-1218.
ISSN 0950-382X
DOI: https://doi.org/10.1111/j.1365-2958.2007.05995.x
Baltazar, Murielle;
Ngandjio, Antoinette;
Holt, Kathryn Elizabeth;
Lepillet, Elodie;
Pardos de la Gandara, Maria;
Collard, Jean-Marc;
Bercion, Raymond;
Nzouankeu, Ariane;
Le Hello, Simon;
Dougan, Gordon;
+2 more...
Fonkoua, Marie-Christine;
Weill, Francois-Xavier;
(2015)
Multidrug-Resistant Salmonella enterica, Serotype Typhi, Gulf of Guinea Region, Africa.
EMERGING INFECTIOUS DISEASES, 21 (4).
pp. 655-659.
ISSN 1080-6040
DOI: https://doi.org/10.3201/eid2104.141355
Blackwell, Grace A;
Holt, Kathryn E;
Bentley, Stephen D;
Hsu, Li Yang;
Hall, Ruth M;
(2017)
Variants of AbGRI3 carrying the armA gene in extensively antibiotic-resistant Acinetobacter baumannii from Singapore.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 72 (4).
pp. 1031-1039.
ISSN 0305-7453
DOI: https://doi.org/10.1093/jac/dkw542
Boinett, Christine J;
Cain, Amy K;
Hawkey, Jane;
Do Hoang, Nhu Tran;
Khanh, Nhu Nguyen Thi;
Thanh, Duy Pham;
Dordel, Janina;
Campbell, James I;
Lan, Nguyen Phu Huong;
Mayho, Matthew;
+8 more...
Langridge, Gemma C;
Hadfield, James;
Chau, Nguyen Van Vinh;
Thwaites, Guy E;
Parkhill, Julian;
Thomson, Nicholas R;
Holt, Kathryn E;
Baker, Stephen;
(2019)
Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii.
Microbial genomics.
ISSN 2057-5858
DOI: https://doi.org/10.1099/mgen.0.000246
Britto, Carl D;
Dyson, Zoe A;
Duchene, Sebastian;
Carter, Michael J;
Gurung, Meeru;
Kelly, Dominic F;
Murdoch, David R;
Ansari, Imran;
Thorson, Stephen;
Shrestha, Shrijana;
+4 more...
Adhikari, Neelam;
Dougan, Gordon;
Holt, Kathryn E;
Pollard, Andrew J;
(2018)
Laboratory and molecular surveillance of paediatric typhoidal Salmonella in Nepal: Antimicrobial resistance and implications for vaccine policy.
PLOS NEGLECTED TROPICAL DISEASES, 12 (4).
ISSN 1935-2735
DOI: https://doi.org/10.1371/journal.pntd.0006408
Brynildsrud, Ola B;
Pepperell, Caitlin S;
Suffys, Philip;
Grandjean, Louis;
Monteserin, Johana;
Debech, Nadia;
Bohlin, Jon;
Alfsnes, Kristian;
Pettersson, John O-H;
Kirkeleite, Ingerid;
+20 more...
Fandinho, Fatima;
da Silva, Marcia Aparecida;
Perdigao, Joao;
Portugal, Isabel;
Viveiros, Miguel;
Clark, Taane;
Caws, Maxine;
Dunstan, Sarah;
Phan, Vuong Khac Thai;
Lopez, Beatriz;
Ritacco, Viviana;
Kitchen, Andrew;
Brown, Tyler S;
van Soolingen, Dick;
O'Neill, Mary B;
Holt, Kathryn E;
Feil, Edward J;
Mathema, Barun;
Balloux, Francois;
Eldholm, Vegard;
(2018)
Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation.
SCIENCE ADVANCES, 4 (10).
ISSN 2375-2548
DOI: https://doi.org/10.1126/sciadv.aat5869
Cain, AK;
Boinett, CJ;
Barquist, L;
Dordel, J;
Fookes, M;
Mayho, M;
Ellington, MJ;
Goulding, D;
Pickard, D;
Wick, RR;
+3 more...
Holt, KE;
Parkhill, J;
Thomson, NR;
(2018)
Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin.
Scientific reports, 8 (1).
p. 9868.
ISSN 2045-2322
DOI: https://doi.org/10.1038/s41598-018-28199-y
Celik, Nermin;
Webb, Chaille T;
Leyton, Denisse L;
Holt, Kathryn E;
Heinz, Eva;
Gorrell, Rebecca;
Kwok, Terry;
Naderer, Thomas;
Strugnell, Richard A;
Speed, Terence P;
+3 more...
Teasdale, Rohan D;
Likic, Vladimir A;
Lithgow, Trevor;
(2012)
A Bioinformatic Strategy for the Detection, Classification and Analysis of Bacterial Autotransporters.
PLOS ONE, 7 (8).
ISSN 1932-6203
DOI: https://doi.org/10.1371/journal.pone.0043245
Cerdeira, Louise T;
Lam, Margaret MC;
Wyres, Kelly L;
Wick, Ryan R;
Judd, Louise M;
Lopes, Ralf;
Ribas, Rosineide M;
Morais, Marcia M;
Holt, Kathryn E;
Lincopan, Nilton;
(2019)
Small IncQ1 and Col-like Plasmids Harboring bla KPC-2 and non-Tn4401 Elements (NTEKPC-IId) in High-Risk Lineages of Klebsiella pneumoniae CG258.
Antimicrobial agents and chemotherapy.
ISSN 0066-4804
DOI: https://doi.org/10.1128/aac.02140-18
Comas, Inaki;
Coscolla, Mireia;
Luo, Tao;
Borrell, Sonia;
Holt, Kathryn E;
Kato-Maeda, Midori;
Parkhill, Julian;
Malla, Bijaya;
Berg, Stefan;
Thwaites, Guy;
+12 more...
Yeboah-Manu, Dorothy;
Bothamley, Graham;
Mei, Jian;
Wei, Lanhai;
Bentley, Stephen;
Harris, Simon R;
Niemann, Stefan;
Diel, Roland;
Aseffa, Abraham;
Gao, Qian;
Young, Douglas;
Gagneux, Sebastien;
(2013)
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.
NATURE GENETICS, 45 (10).
1176-U311.
ISSN 1061-4036
DOI: https://doi.org/10.1038/ng.2744
Darton, Thomas C;
Meiring, James E;
Tonks, Susan;
Khan, Md Arifuzzaman;
Khanam, Farhana;
Shakya, Mila;
Thindwa, Deus;
Baker, Stephen;
Basnyat, Buddha;
Clemens, John D;
+10 more...
Dougan, Gordon;
Dolecek, Christiane;
Dunstan, Sarah J;
Gordon, Melita A;
Heyderman, Robert S;
Holt, Kathryn E;
Pitzer, Virginia E;
Qadri, Firdausi;
Zaman, K;
Pollard, Andrew J;
(2017)
The STRATAA study protocol: a programme to assess the burden of enteric fever in Bangladesh, Malawi and Nepal using prospective population census, passive surveillance, serological studies and healthcare utilisation surveys.
BMJ OPEN, 7 (6).
ISSN 2044-6055
DOI: https://doi.org/10.1136/bmjopen-2017-016283
Duchene, Sebastian;
Duchene, David A;
Di Giallonardo, Francesca;
Eden, John-Sebastian;
Geoghegan, Jemma L;
Holt, Kathryn E;
Ho, Simon YW;
Holmes, Edward C;
(2016)
Cross-validation to select Bayesian hierarchical models in phylogenetics.
BMC EVOLUTIONARY BIOLOGY, 16 (1).
ISSN 1471-2148
DOI: https://doi.org/10.1186/s12862-016-0688-y
Duchene, Sebastian;
Duchene, David A;
Geoghegan, Jemma L;
Dyson, Zoe A;
Hawkey, Jane;
Holt, Kathryn E;
(2018)
Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods.
BMC EVOLUTIONARY BIOLOGY, 18 (1).
ISSN 1471-2148
DOI: https://doi.org/10.1186/s12862-018-1210-5
Duchene, Sebastian;
Holt, Kathryn E;
Weill, Francois-Xavier;
Le Hello, Simon;
Hawkey, Jane;
Edwards, David J;
Fourment, Mathieu;
Holmes, Edward C;
(2016)
Genome-scale rates of evolutionary change in bacteria.
MICROBIAL GENOMICS, 2 (11).
ISSN 2057-5858
DOI: https://doi.org/10.1099/mgen.0.000094
Gorrie, Claire L;
Mirceta, Mirjana;
Wick, Ryan R;
Edwards, David J;
Thomson, Nicholas R;
Strugnell, Richard A;
Pratt, Nigel F;
Garlick, Jill S;
Watson, Kerri M;
Pilcher, David V;
+4 more...
McGloughlin, Steve A;
Spelman, Denis W;
Jenney, Adam WJ;
Holt, Kathryn E;
(2017)
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients.
CLINICAL INFECTIOUS DISEASES, 65 (2).
pp. 208-215.
ISSN 1058-4838
DOI: https://doi.org/10.1093/cid/cix270
Gorrie, Claire L;
Mirceta, Mirjana;
Wick, Ryan R;
Judd, Louise M;
Wyres, Kelly L;
Thomson, Nicholas R;
Strugnell, Richard A;
Pratt, Nigel F;
Garlick, Jill S;
Watson, Kerrie M;
+5 more...
Hunter, Peter C;
McGloughlin, Steve A;
Spelman, Denis W;
Jenney, Adam WJ;
Holt, Kathryn E;
(2018)
Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital.
CLINICAL INFECTIOUS DISEASES, 67 (2).
pp. 161-170.
ISSN 1058-4838
DOI: https://doi.org/10.1093/cid/ciy027
Hamidian, Mohammad;
Hawkey, Jane;
Holt, Kathryn E;
Hall, Ruth M;
(2015)
Genome Sequence of Acinetobacter baumannii Strain D36, an Antibiotic-Resistant Isolate from Lineage 2 of Global Clone 1.
Genome announcements, 3 (6).
ISSN 2169-8287
DOI: https://doi.org/10.1128/genomeA.01478-15
Hamidian, Mohammad;
Hawkey, Jane;
Wick, Ryan;
Holt, Kathryn E;
Hall, Ruth M;
(2019)
Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1.
Microbial Genomics, 5 (1).
DOI: https://doi.org/10.1099/mgen.0.000242
Hamidian, Mohammad;
Holt, Kathryn E;
Pickard, Derek;
Dougan, Gordon;
Hall, Ruth M;
(2014)
A GC1 Acinetobacter baumannii isolate carrying AbaR3 and the aminoglycoside resistance transposon TnaphA6 in a conjugative plasmid.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 69 (4).
pp. 955-958.
ISSN 0305-7453
DOI: https://doi.org/10.1093/jac/dkt454
Hamidian, Mohammad;
Holt, Kathryn E;
Pickard, Derek;
Hall, Ruth M;
(2016)
A small Acinetobacter plasmid carrying the tet39 tetracycline resistance determinant.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 71 (1).
pp. 269-271.
ISSN 0305-7453
DOI: https://doi.org/10.1093/jac/dkv293
Hamidian, Mohammad;
Wynn, Matthew;
Holt, Kathryn E;
Pickard, Derek;
Dougan, Gordon;
Hall, Ruth M;
(2014)
Identification of a marker for two lineages within the GC1 clone of Acinetobacter baumannii.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 69 (2).
pp. 557-558.
ISSN 0305-7453
DOI: https://doi.org/10.1093/jac/dkt379
Hawkey, Jane;
Ascher, David B;
Judd, Louise M;
Wick, Ryan R;
Kostoulias, Xenia;
Cleland, Heather;
Spelman, Denis W;
Padiglione, Alex;
Peleg, Anton Y;
Holt, Kathryn E;
(2018)
Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection.
MICROBIAL GENOMICS, 4 (3).
ISSN 2057-5858
DOI: https://doi.org/10.1099/mgen.0.000165
Hawkey, Jane;
Le Hello, Simon;
Doublet, Benoît;
Granier, Sophie A;
Hendriksen, Rene S;
Fricke, W Florian;
Ceyssens, Pieter-Jan;
Gomart, Camille;
Billman-Jacobe, Helen;
Holt, Kathryn E;
+1 more...
Weill, François-Xavier;
(2019)
Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198.
Microbial genomics.
DOI: https://doi.org/10.1099/mgen.0.000269
Hogg, Geoff;
Dimovski, Karolina;
Hiley, Lester;
Holt, Kathryn E;
(2013)
Draft Genome Sequences for Ten Salmonella enterica Serovar Typhimurium Phage Type 135 Variants.
Genome announcements, 1 (3).
S69-S82.
ISSN 2169-8287
DOI: https://doi.org/10.1128/genomeA.00293-13
Holt, Kathryn E;
Hamidian, Mohammad;
Kenyon, Johanna J;
Wynn, Matthew T;
Hawkey, Jane;
Pickard, Derek;
Hall, Ruth M;
(2015)
Genome Sequence of Acinetobacter baumannii Strain A1, an Early Example of Antibiotic-Resistant Global Clone 1.
Genome announcements, 3 (2).
ISSN 2169-8287
DOI: https://doi.org/10.1128/genomeA.00032-15
Holt, Kathryn E;
McAdam, Paul;
Phan, Vuong Khac Thai;
Nguyen, Thuy Thuong Thuong;
Dang, Thi Minh Ha;
Nguyen, Ngoc Lan;
Nguyen, Huu Lan;
Nguyen, Thi Quynh Nhu;
Hoang, Thanh Hai;
Vu, Thi Ngoc Ha;
+11 more...
Thwaites, Guy;
Edwards, David J;
Nath, Artika P;
Pham, Kym;
Ascher, David B;
Farrar, Jeremy;
Khor, Chiea Chuen;
Teo, Yik Ying;
Inouye, Michael;
Caws, Maxine;
Dunstan, Sarah J;
(2018)
Frequent transmission of the Mycobacterium tuberculosis Beijing lineage and positive selection for the EsxW Beijing variant in Vietnam.
NATURE GENETICS, 50 (6).
849-+.
ISSN 1061-4036
DOI: https://doi.org/10.1038/s41588-018-0117-9
Holt, Kathryn E;
Millar, A Harvey;
Whelan, James;
(2006)
ModuleFinder and CoReg: alternative tools for linking gene expression modules with promoter sequences motifs to uncover gene regulation mechanisms in plants.
PLANT METHODS, 2 (1).
ISSN 1746-4811
DOI: https://doi.org/10.1186/1746-4811-2-8
Holt, Kathryn E;
Teo, Yik Y;
Li, Heng;
Nair, Satheesh;
Dougan, Gordon;
Wain, John;
Parkhill, Julian;
(2009)
Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA.
BIOINFORMATICS, 25 (16).
pp. 2074-2075.
ISSN 1367-4803
DOI: https://doi.org/10.1093/bioinformatics/btp344
Holt, Kathryn E;
Thomson, Nicholas R;
Wain, John;
Langridge, Gemma C;
Hasan, Rumina;
Bhutta, Zulfiqar A;
Quail, Michael A;
Norbertczak, Halina;
Walker, Danielle;
Simmonds, Mark;
+5 more...
White, Brian;
Bason, Nathalie;
Mungall, Karen;
Dougan, Gordon;
Parkhill, Julian;
(2009)
Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi.
BMC GENOMICS, 10 (1).
ISSN 1471-2164
DOI: https://doi.org/10.1186/1471-2164-10-36
Holt, Kathryn;
Kenyon, Johanna J;
Hamidian, Mohammad;
Schultz, Mark B;
Pickard, Derek J;
Dougan, Gordon;
Hall, Ruth;
(2016)
Five decades of genome evolution in the globally distributed, extensively antibiotic-resistant Acinetobacter baumannii global clone 1.
MICROBIAL GENOMICS, 2 (2).
ISSN 2057-5858
DOI: https://doi.org/10.1099/mgen.0.000052
Howden, Benjamin P;
Holt, Kathryn E;
Lam, Margaret MC;
Seemann, Torsten;
Ballard, Susan;
Coombs, Geoffrey W;
Tong, Steven YC;
Grayson, M Lindsay;
Johnson, Paul DR;
Stinear, Timothy P;
(2013)
Genomic Insights to Control the Emergence of Vancomycin-Resistant Enterococci.
MBIO, 4 (4).
ISSN 2150-7511
DOI: https://doi.org/10.1128/mBio.00412-13
Ingle, DJ;
Levine, MM;
Kotloff, KL;
Holt, KE;
Robins-Browne, RM;
(2018)
Dynamics of antimicrobial resistance in intestinal Escherichia coli from children in community settings in South Asia and sub-Saharan Africa.
Nature microbiology.
ISSN 2058-5276
DOI: https://doi.org/10.1038/s41564-018-0217-4
Ingle, Danielle J;
Valcanis, Mary;
Kuzevski, Alex;
Tauschek, Marija;
Inouye, Michael;
Stinear, Tim;
Levine, Myron M;
Robins-Browne, Roy M;
Holt, Kathryn E;
(2016)
In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages.
MICROBIAL GENOMICS, 2 (7).
ISSN 2057-5858
DOI: https://doi.org/10.1099/mgen.0.000064
Inouye, Michael;
Conway, Thomas C;
Zobel, Justin;
Holt, Kathryn E;
(2012)
Short read sequence typing (SRST): multi-locus sequence types from short reads.
BMC GENOMICS, 13 (1).
ISSN 1471-2164
DOI: https://doi.org/10.1186/1471-2164-13-338
Inouye, Michael;
Dashnow, Harriet;
Raven, Lesley-Ann;
Schultz, Mark B;
Pope, Bernard J;
Tomita, Takehiro;
Zobel, Justin;
Holt, Kathryn E;
(2014)
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs.
GENOME MEDICINE, 6 (11).
ISSN 1756-994X
DOI: https://doi.org/10.1186/s13073-014-0090-6
Jansen, Angela M;
Hall, Lindsay J;
Clare, Simon;
Goulding, David;
Holt, Kathryn E;
Grant, Andrew J;
Mastroeni, Piero;
Dougan, Gordon;
Kingsley, Robert A;
(2011)
A Salmonella Typhimurium-Typhi Genomic Chimera: A Model to Study Vi Polysaccharide Capsule Function In Vivo.
PLOS PATHOGENS, 7 (7).
ISSN 1553-7366
DOI: https://doi.org/10.1371/journal.ppat.1002131
Karkey, Abhilasha;
Arjyal, Amit;
Anders, Katherine L;
Boni, Maciej F;
Dongol, Sabina;
Koirala, Samir;
Phan, Vu Tra My;
Tran, Vu Thieu Nga;
Clements, Archie CA;
Holt, Kathryn E;
+8 more...
Pham, Thanh Duy;
Day, Jeremy N;
Campbell, James I;
Dougan, Gordon;
Dolecek, Christiane;
Farrar, Jeremy;
Basnyat, Buddha;
Baker, Stephen;
(2010)
The Burden and Characteristics of Enteric Fever at a Healthcare Facility in a Densely Populated Area of Kathmandu.
PLOS ONE, 5 (11).
ISSN 1932-6203
DOI: https://doi.org/10.1371/journal.pone.0013988
Karmakar, Malancha;
Rodrigues, Carlos HM;
Holt, Kathryn E;
Dunstan, Sarah J;
Denholm, Justin;
Ascher, David B;
(2019)
Empirical ways to identify novel Bedaquiline resistance mutations in AtpE.
PloS one, 14 (5).
e0217169.
ISSN 1932-6203
DOI: https://doi.org/10.1371/journal.pone.0217169
Kingsley, Robert A;
Kay, Sally;
Connor, Thomas;
Barquist, Lars;
Sait, Leanne;
Holt, Kathryn E;
Sivaraman, Karthi;
Wileman, Thomas;
Goulding, David;
Clare, Simon;
+10 more...
Hale, Christine;
Seshasayee, Aswin;
Harris, Simon;
Thomson, Nicholas R;
Gardner, Paul;
Rabsch, Wolfgang;
Wigley, Paul;
Humphrey, Tom;
Parkhill, Julian;
Dougan, Gordon;
(2013)
Genome and Transcriptome Adaptation Accompanying Emergence of the Definitive Type 2 Host-Restricted Salmonella enterica Serovar Typhimurium Pathovar.
MBIO, 4 (5).
ISSN 2150-7511
DOI: https://doi.org/10.1128/mBio.00565-13
Lam, MMC;
Wyres, KL;
Judd, LM;
Wick, RR;
Jenney, A;
Brisse, S;
Holt, KE;
(2018)
Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae.
Genome medicine, 10 (1).
p. 77.
ISSN 1756-994X
DOI: https://doi.org/10.1186/s13073-018-0587-5
Lam, Margaret MC;
Wick, Ryan R;
Wyres, Kelly L;
Gorrie, Claire L;
Judd, Louise M;
Jenney, Adam WJ;
Brisse, Sylvain;
Holt, Kathryn E;
(2018)
Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations.
MICROBIAL GENOMICS, 4 (9).
ISSN 2057-5858
DOI: https://doi.org/10.1099/mgen.0.000196
Lam, Margaret MC;
Wyres, Kelly L;
Wick, Ryan R;
Judd, Louise M;
Fostervold, Aasmund;
Holt, Kathryn E;
Löhr, Iren Høyland;
(2019)
Convergence of virulence and MDR in a single plasmid vector in MDR Klebsiella pneumoniae ST15.
The Journal of antimicrobial chemotherapy.
ISSN 0305-7453
DOI: https://doi.org/10.1093/jac/dkz028
Lee, I Russel;
Molton, James S;
Wyres, Kelly L;
Gorrie, Claire;
Wong, Jocelyn;
Hoh, Chu Han;
Teo, Jeanette;
Kalimuddin, Shirin;
Lye, David C;
Archuleta, Sophia;
+2 more...
Holt, Kathryn E;
Gan, Yunn-Hwen;
(2016)
Differential host susceptibility and bacterial virulence factors driving Klebsiella liver abscess in an ethnically diverse population.
SCIENTIFIC REPORTS, 6.
ISSN 2045-2322
DOI: https://doi.org/10.1038/srep29316
M C Lam, M;
Wyres, KL;
Duchêne, S;
Wick, RR;
Judd, LM;
Gan, YH;
Hoh, CH;
Archuleta, S;
Molton, JS;
Kalimuddin, S;
+4 more...
Koh, TH;
Passet, V;
Brisse, S;
Holt, KE;
(2018)
Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination.
Nature communications, 9 (1).
p. 2703.
ISSN 2041-1723
DOI: https://doi.org/10.1038/s41467-018-05114-7
Manna, S;
Ortika, BD;
Dunne, EM;
Holt, KE;
Kama, M;
Russell, FM;
Hinds, J;
Satzke, C;
(2018)
A novel genetic variant of Streptococcus pneumoniae serotype 11A discovered in Fiji.
CLINICAL MICROBIOLOGY AND INFECTION, 24 (4).
ISSN 1198-743X
DOI: https://doi.org/10.1016/j.cmi.2017.06.031
Mostowy, RJ;
Holt, KE;
(2018)
Diversity-Generating Machines: Genetics of Bacterial Sugar-Coating.
Trends in microbiology.
ISSN 0966-842X
DOI: https://doi.org/10.1016/j.tim.2018.06.006
Nigro, Steven J;
Holt, Kathryn E;
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Carbapenem and amikacin resistance on a large conjugative Acinetobacter baumannii plasmid.
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Complete Genome Sequence of WM99c, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 2 (GC2) Strain Representing an Australian GC2 Lineage.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 7 (22).
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Park, Se Eun;
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Panzner, Ursula;
Espinoza, Ligia Maria Cruz;
von Kalckreuth, Vera;
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Crump, John A;
Breiman, Robert F;
Adu-Sarkodie, Yaw;
Owusu-Dabo, Ellis;
Rakotozandrindrainy, Raphaël;
Soura, Abdramane Bassiahi;
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Gasmelseed, Nagla;
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Biggs, Holly M;
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Montgomery, Joel M;
Cosmas, Leonard;
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Fields, Barry;
Sarpong, Nimako;
Razafindrabe, Tsiriniaina Jean Luco;
Raminosoa, Tiana Mirana;
Kabore, Leon Parfait;
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Teferi, Mekonnen;
Yeshitela, Biruk;
El Tayeb, Muna Ahmed;
Sooka, Arvinda;
Meyer, Christian G;
Krumkamp, Ralf;
Dekker, Denise Myriam;
Jaeger, Anna;
Poppert, Sven;
Tall, Adama;
Niang, Aissatou;
Bjerregaard-Andersen, Morten;
Løfberg, Sandra Valborg;
Seo, Hye Jin;
Jeon, Hyon Jin;
Deerin, Jessica Fung;
Park, Jinkyung;
Konings, Frank;
Ali, Mohammad;
Clemens, John D;
Hughes, Peter;
Sendagala, Juliet Nsimire;
Vudriko, Tobias;
Downing, Robert;
Ikumapayi, Usman N;
Mackenzie, Grant A;
Obaro, Stephen;
Argimon, Silvia;
Aanensen, David M;
Page, Andrew;
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Nicholson, Ainsley C;
Edwards, David J;
Gundlach, Kristin M;
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Gulvik, Christopher A;
Bell, Melissa E;
Rendueles, Olaya;
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Hugon, Perrine;
Clermont, Dominique;
Enouf, Vincent;
Loparev, Vladimir;
Juieng, Phalasy;
Monson, Timothy;
Warshauer, David;
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Noble-Wang, Judith;
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A Scalable Permutation Approach Reveals Replication and Preservation Patterns of Network Modules in Large Datasets.
CELL SYSTEMS, 3 (1).
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Are Escherichia coli Pathotypes Still Relevant in the Era of Whole-Genome Sequencing?
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 6 (NOV).
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Brozynska, Marta;
Kusel, Merci Mh;
Johnston, Sebastian L;
Gern, James E;
Lemanske, Robert F;
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Simpson, Angela;
Custovic, Adnan;
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Holt, Kathryn;
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Campbell, James I;
Tran, Thuy Chau;
Nguyen, Van Vinh Chau;
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Arjyal, Amit;
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Haworth, Kathryn;
Peters, Anna;
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Kingsley, Robert A;
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Holt, Kathryn E;
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An Outpatient, Ambulant-Design, Controlled Human Infection Model Using Escalating Doses of Salmonella Typhi Challenge Delivered in Sodium Bicarbonate Solution.
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hicap: in silico serotyping of the Haemophilus influenzae capsule locus.
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FastSpar: Rapid and scalable correlation estimation for compositional data.
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Completing bacterial genome assemblies with multiplex MinION sequencing.
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Wick, Ryan;
Judd, Louise;
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Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks.
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Sivaraman, Karthikeyan;
Page, Andrew J;
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Gorrie, Claire L;
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Wyres, Kelly;
Hawkey, Jane;
Hetland, Marit;
Fostervold, Aasmund;
Wick, Ryan;
Judd, Louise;
Hamidian, Mohammad;
Howden, Benjamin;
Lohr, Iren;
Holt, Kathryn;
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Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307.
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Doig, Kenneth D;
Holt, Kathryn E;
Fyfe, Janet AM;
Lavender, Caroline J;
Eddyani, Miriam;
Portaels, Francoise;
Yeboah-Manu, Dorothy;
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Item availability may be restricted.
Ingle, Danielle J;
Easton, Marion;
Valcanis, Mary;
Seemann, Torsten;
Kwong, Jason C;
Stephens, Nicola;
Carter, Glen P;
Gonçalves da Silva, Anders;
Adamopoulos, James;
Baines, Sarah L;
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Holt, Kathryn E;
Chow, Eric PF;
Fairley, Christopher K;
Chen, Marcus Y;
Kirk, Martyn;
Howden, Benjamin P;
Williamson, Deborah A;
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Co-circulation of multidrug-resistant Shigella among men who have sex with men, Australia.
Clinical Infectious Diseases.
ISSN 1058-4838
DOI: https://doi.org/10.1093/cid/ciz005
Item availability may be restricted.
Wyres, Kelly;
Holt, Kathryn;
(2018)
Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria.
DOI: https://doi.org/10.7287/peerj.preprints.26852
Item availability may be restricted.
Wyres, Kelly;
Wick, Ryan;
Judd, Louise;
Froumine, Roni;
Tokolyi, Alex;
Gorrie, Claire;
Lam, Margaret;
Duchene, Sebastian;
Jenney, Adam;
Holt, Kathryn;
(2018)
Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae.
DOI: https://doi.org/10.1101/414235
Item availability may be restricted.