Abaasa, Andrew; Nash, Stephen; Mayanja, Yunia; Price, Matt; Fast, Patricia E; Kamali, Anatoli; Kaleebu, Pontiano; Todd, Jim; (2019) Simulated vaccine efficacy trials to estimate HIV incidence for actual vaccine clinical trials in key populations in Uganda. Vaccine, 37 (15). pp. 2065-2072. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2019.02.072

Bbosa, Nicholas; Ssemwanga, Deogratius; Nsubuga, Rebecca N; Salazar-Gonzalez, Jesus F; Salazar, Maria G; Nanyonjo, Maria; Kuteesa, Monica; Seeley, Janet; Kiwanuka, Noah; Bagaya, Bernard S; +3 more... Yebra, Gonzalo; Leigh-Brown, Andrew; Kaleebu, Pontiano; (2019) Phylogeography of HIV-1 suggests that Ugandan fishing communities are a sink for, not a source of, virus from general populations. Scientific reports, 9 (1). p. 1051. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-37458-x

Kitonsa, Jonathan; Mayanja, Yunia; Aling, Emmanuel; Kiwanuka, Julius; Namutundu, Juliana; Anywaine, Zacchaeus; Ggayi, Abu-Baker; Kibengo, Freddie; Kiwanuka, Noah; Kaleebu, Pontiano; (2019) Factors affecting mortality among HIV positive patients two years after completing recommended therapy for Cryptococcal meningitis in Uganda. PLOS ONE, 14 (1). ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0210287

Nakiboneka, Ritah; Mugaba, Susan; Auma, Betty O; Kintu, Christopher; Lindan, Christina; Nanteza, Mary Bridget; Kaleebu, Pontiano; Serwanga, Jennifer; (2019) Interferon gamma (IFN-γ) negative CD4+ and CD8+ T-cells can produce immune mediators in response to viral antigens. Vaccine, 37 (1). pp. 113-122. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.11.024

Davis, C; Mgomella, GS; Filipe, ADS; Frost, EH; Giroux, G; Hughes, J; Hogan, C; Kaleebu, P; Asiki, G; McLauchlan, J; +13 more... Niebel, M; Ocama, P; Pomila, C; Pybus, OG; Pépin, J; Simmonds, P; Singer, JB; Sreenu, VB; Wekesa, C; Young, EH; Murphy, DG; Sandhu, M; Thomson, EC; (2018) New highly diverse hepatitis C strains detected in sub-Saharan Africa have unknown susceptibility to direct-acting antiviral treatments. Hepatology (Baltimore, Md). ISSN 0270-9139 DOI: https://doi.org/10.1002/hep.30342 Full text not available from this repository.

Fily, F; Ayikobua, E; Ssemwanga, D; Nicholas, S; Kaleebu, P; Delaugerre, C; Pasquier, E; Amoros Quiles, I; Balkan, S; Schramm, B; (2018) HIV-1 drug resistance testing at second-line regimen failure in Arua, Uganda: avoiding unnecessary switch to an empiric third-line. Tropical medicine & international health, 23 (10). pp. 1075-1083. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.13131 Full text not available from this repository.

Gossez, M; Martin, GE; Pace, M; Ramjee, G; Premraj, A; Kaleebu, P; Rees, H; Inshaw, J; Stöhr, W; Meyerowitz, J; +8 more... Hopkins, E; Jones, M; Hurst, J; Porter, K; Babiker, A; Fidler, S; Frater, J; SPARTAC Trial Investigators; (2018) Virological remission after antiretroviral therapy interruption in female African HIV seroconverters. AIDS (London, England). ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000002044 Item availability may be restricted.

Kaleebu, Pontiano; Kitandwe, Paul Kato; Lutalo, Tom; Kigozi, Aminah; Watera, Christine; Nanteza, Mary Bridget; Hughes, Peter; Musinguzi, Joshua; Opio, Alex; Downing, Robert; +1 more... Mbidde, Edward Katongole; (2018) Evaluation of HIV-1 rapid tests and identification of alternative testing algorithms for use in Uganda. BMC INFECTIOUS DISEASES, 18 (1). ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-018-3001-4

Kazooba, Patrick; Mayanja, Billy Nsubuga; Levin, Jonathan; Masiira, Ben; Kaleebu, Pontiano; (2018) Virological failure on first-line antiretroviral therapy; associated factors and a pragmatic approach for switching to second line therapy-evidence from a prospective cohort study in rural South-Western Uganda, 2004-2011. The Pan African medical journal, 29. p. 191. ISSN 1937-8688 DOI: https://doi.org/10.11604/pamj.2018.29.191.11940

Martin, GE; Pace, M; Thornhill, JP; Phetsouphanh, C; Meyerowitz, J; Gossez, M; Brown, H; Olejniczak, N; Lwanga, J; Ramjee, G; +8 more... Kaleebu, P; Porter, K; Willberg, CB; Klenerman, P; Nwokolo, N; Fox, J; Fidler, S; Frater, J; (2018) CD32-Expressing CD4 T Cells Are Phenotypically Diverse and Can Contain Proviral HIV DNA. Frontiers in immunology, 9. p. 928. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2018.00928

Ntale, RS; Rutayisire, G; Mujyarugamba, P; Shema, E; Greatorex, J; Frost, SDW; Kaleebu, P; (2018) HIV seroprevalence, self-reported STIs and associated risk factors among men who have sex with men: a cross-sectional study in Rwanda, 2015. Sexually transmitted infections. ISSN 1368-4973 DOI: https://doi.org/10.1136/sextrans-2017-053311

Okoboi, S; Castelnuovo, B; Moore, DM; Musaazi, J; Kambugu, A; Birungi, J; Kaleebu, P; Nanfuka, M; Kamya, MR; Van Rie, A; (2018) Risky sexual behavior among patients on long-term antiretroviral therapy: a prospective cohort study in urban and rural Uganda. AIDS research and therapy, 15 (1). p. 15. ISSN 1742-6405 DOI: https://doi.org/10.1186/s12981-018-0203-1

von Braun, Amrei; Sekaggya-Wiltshire, Christine; Bachmann, Nadine; Ssemwanga, Deogratius; Scherrer, Alexandra U; Nanyonjo, Maria; Kapaata, Anne; Kaleebu, Pontiano; Günthard, Huldrych F; Castelnuovo, Barbara; +2 more... Fehr, Jan; Kambugu, Andrew; (2018) HIV-1 Drug Resistance Among Ugandan Adults Attending an Urban Out-Patient Clinic. Journal of acquired immune deficiency syndromes, 78 (5). pp. 566-573. ISSN 1525-4135 DOI: https://doi.org/10.1097/qai.0000000000001717

Dolling, DI; Goodall, RL; Chirara, M; Hakim, J; Nkurunziza, P; Munderi, P; Eram, D; Tumukunde, D; Spyer, MJ; Gilks, CF; +4 more... Kaleebu, P; Dunn, DT; Pillay, D; , DARTVirologyGroup; (2017) The virological durability of first-line ART among HIV-positive adult patients in resource limited settings without virological monitoring: a retrospective analysis of DART trial data. BMC infectious diseases, 17 (1). p. 160. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2266-3

Ekoru, K; Murphy, GAV; Young, EH; Delisle, H; Jerome, CS; Assah, F; Longo-Mbenza, B; Nzambi, JPD; On'Kin, JBK; Buntix, F; +33 more... Muyer, MC; Christensen, DL; Wesseh, CS; Sabir, A; Okafor, C; Gezawa, ID; Puepet, F; Enang, O; Raimi, T; Ohwovoriole, E; Oladapo, OO; Bovet, P; Mollentze, W; Unwin, N; Gray, WK; Walker, R; Agoudavi, K; Siziya, S; Chifamba, J; Njelekela, M; Fourie, CM; Kruger, S; Schutte, AE; Walsh, C; Gareta, D; Kamali, A; Seeley, J; Norris, SA; Crowther, NJ; Pillay, D; Kaleebu, P; Motala, AA; Sandhu, MS; (2017) Deriving an optimal threshold of waist circumference for detecting cardiometabolic risk in sub-Saharan Africa. Int J Obes (Lond). ISSN 1476-5497 DOI: https://doi.org/10.1038/ijo.2017.240

Jordan, MR; Penazzato, M; Cournil, A; Vubil, A; Jani, I; Hunt, G; Carmona, S; Maphalala, G; Mthethwa, N; Watera, C; +8 more... Kaleebu, P; Musanhu, CC; Mtapuri-Zinyowera, S; Dzangare, J; Peeters, M; Yang, C; Parkin, N; Bertagnolio, S; (2017) Human Immunodeficiency Virus (HIV) Drug Resistance in African Infants and Young Children Newly Diagnosed With HIV: A Multicountry Analysis. Clinical infectious diseases, 65 (12). pp. 2018-2025. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix698 Full text not available from this repository.

Kiwanuka, Noah; Ssetaala, Ali; Ssekandi, Ismail; Nalutaaya, Annet; Kitandwe, Paul Kato; Ssempiira, Julius; Bagaya, Bernard Ssentalo; Balyegisawa, Apolo; Kaleebu, Pontiano; Hahn, Judith; +2 more... Lindan, Christina; Sewankambo, Nelson Kaulukusi; (2017) Population attributable fraction of incident HIV infections associated with alcohol consumption in fishing communities around Lake Victoria, Uganda. PLOS ONE, 12 (2). ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0171200

Price, H; Dunn, D; Zachary, T; Vudriko, T; Chirara, M; Kityo, C; Munderi, P; Spyer, M; Hakim, J; Gilks, C; +4 more... Kaleebu, P; Pillay, D; Gilson, R; DART Virology Group; (2017) Hepatitis B serological markers and plasma DNA concentrations. AIDS (London, England), 31 (8). pp. 1109-1117. ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000001454

Ratmann, O; Wymant, C; Colijn, C; Danaviah, S; Essex, M; Frost, SDW; Gall, A; Gaiseitsiwe, S; Grabowski, M; Gray, R; +22 more... Guindon, S; von Haeseler, A; Kaleebu, P; Kendall, M; Kozlov, A; Manasa, J; Minh, BQ; Moyo, S; Novitsky, V; Nsubuga, R; Pillay, S; Quinn, TC; Serwadda, D; Ssemwanga, D; Stamatakis, A; Trifinopoulos, J; Wawer, M; Leigh Brown, A; de Oliveira, T; Kellam, P; Pillay, D; Fraser, C; (2017) HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences. AIDS research and human retroviruses. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2017.0061

Rhee, SY; Varghese, V; Holmes, SP; Van Zyl, GU; Steegen, K; Boyd, MA; Cooper, DA; Nsanzimana, S; Saravanan, S; Charpentier, C; +32 more... de Oliveira, T; Etiebet, MA; Garcia, F; Goedhals, D; Gomes, P; Günthard, HF; Hamers, RL; Hoffmann, CJ; Hunt, G; Jiamsakul, A; Kaleebu, P; Kanki, P; Kantor, R; Kerschberger, B; Marconi, VC; D'amour Ndahimana, J; Ndembi, N; Ngo-Giang-Huong, N; Rokx, C; Santoro, MM; Schapiro, JM; Schmidt, D; Seu, L; Sigaloff, KCE; Sirivichayakul, S; Skhosana, L; Sunpath, H; Tang, M; Yang, C; Carmona, S; Gupta, RK; Shafer, RW; (2017) Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration. EBioMedicine, 18. pp. 225-235. ISSN 2352-3964 DOI: https://doi.org/10.1016/j.ebiom.2017.03.024

Goodall, RL; Dunn, DT; Nkurunziza, P; Mugarura, L; Pattery, T; Munderi, P; Kityo, C; Gilks, C; Kaleebu, P; Pillay, D; +2 more... Gupta, RK; DART Virology Group; (2016) Rapid accumulation of HIV-1 thymidine analogue mutations and phenotypic impact following prolonged viral failure on zidovudine-based first-line ART in sub-Saharan Africa. The Journal of antimicrobial chemotherapy, 72 (5). pp. 1450-1455. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkw583

Thornhill, John; Inshaw, Jamie; Kaleebu, Pontiano; Cooper, David; Ramjee, Gita; Schechter, Mauro; Tambussi, Giuseppe; Fox, Julie; Samuel, Miriam; Miro, Jose M; +3 more... Weber, Jonathan; Porter, Kholoud; Fidler, Sarah; (2016) Brief Report: Enhanced Normalization of CD4/CD8 Ratio With Earlier Antiretroviral Therapy at Primary HIV Infection. Journal of acquired immune deficiency syndromes (1999), 73 (1). pp. 69-73. ISSN 1525-4135 DOI: https://doi.org/10.1097/QAI.0000000000001013

Kamali, Anatoli; Price, Matt A; Lakhi, Shabir; Karita, Etienne; Inambao, Mubiana; Sanders, Eduard J; Anzala, Omu; Latka, Mary H; Bekker, Linda-Gail; Kaleebu, Pontiano; +16 more... Asiki, Gershim; Ssetaala, Ali; Ruzagira, Eugene; Allen, Susan; Farmer, Paul; Hunter, Eric; Mutua, Gaudensia; Makkan, Heeran; Tichacek, Amanda; Brill, Ilene K; Fast, Pat; Stevens, Gwynn; Chetty, Paramesh; Amornkul, Pauli N; Gilmour, Jill; IAVI Africa HIV Prevention Partnership; (2015) Creating an African HIV clinical research and prevention trials network: HIV prevalence, incidence and transmission. PloS one, 10 (1). e0116100-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0116100

Kim, Jiho; Zhang, Wendy; Nyonyitono, Maureen; Lourenco, Lillian; Nanfuka, Mastula; Okoboi, Stephen; Birungi, Josephine; Lester, Richard T; Kaleebu, Pontiano; Munderi, Paula; +1 more... Moore, David M; (2015) Feasibility and acceptability of mobile phone short message service as a support for patients receiving antiretroviral therapy in rural Uganda: a cross-sectional study. Journal of the International AIDS Society, 18 (1). 20311-. ISSN 1758-2652 DOI: https://doi.org/10.7448/IAS.18.1.20311

King, Rachel; Min, Jeong; Birungi, Josephine; Nyonyintono, Maureen; Muldoon, Katherine A; Khanakwa, Sarah; Kaleebu, Pontiano; Moore, David M; (2015) Effect of Couples Counselling on Reported HIV Risk Behaviour among HIV Serodiscordant Couples by ART Use, HIV Status and Gender in Rural Uganda. PloS one, 10 (9). e0136531-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0136531

Okoboi, Stephen; Ding, Erin; Persuad, Steven; Wangisi, Jonathan; Birungi, Josephine; Shurgold, Susan; Kato, Darius; Nyonyintono, Maureen; Egessa, Aggrey; Bakanda, Celestin; +3 more... Munderi, Paula; Kaleebu, Pontiano; Moore, David M; (2015) Community-based ART distribution system can effectively facilitate long-term program retention and low-rates of death and virologic failure in rural Uganda. AIDS research and therapy, 12 (1). 37-. ISSN 1742-6405 DOI: https://doi.org/10.1186/s12981-015-0077-4

Rhee, Soo-Yon; Blanco, Jose Luis; Jordan, Michael R; Taylor, Jonathan; Lemey, Philippe; Varghese, Vici; Hamers, Raph L; Bertagnolio, Silvia; de Wit, Tobias F Rinke; Aghokeng, Avelin F; +63 more... Albert, Jan; Avi, Radko; Avila-Rios, Santiago; Bessong, Pascal O; Brooks, James I; Boucher, Charles AB; Brumme, Zabrina L; Busch, Michael P; Bussmann, Hermann; Chaix, Marie-Laure; Chin, Bum Sik; D'Aquin, Toni T; De Gascun, Cillian F; Derache, Anne; Descamps, Diane; Deshpande, Alaka K; Djoko, Cyrille F; Eshleman, Susan H; Fleury, Herve; Frange, Pierre; Fujisaki, Seiichiro; Harrigan, P Richard; Hattori, Junko; Holguin, Africa; Hunt, Gillian M; Ichimura, Hiroshi; Kaleebu, Pontiano; Katzenstein, David; Kiertiburanakul, Sasisopin; Kim, Jerome H; Kim, Sung Soon; Li, Yanpeng; Lutsar, Irja; Morris, Lynn; Ndembi, Nicaise; Kee, Peng NG; Paranjape, Ramesh S; Peeters, Martine; Poljak, Mario; Price, Matt A; Ragonnet-Cronin, Manon L; Reyes-Terán, Gustavo; Rolland, Morgane; Sirivichayakul, Sunee; Smith, Davey M; Soares, Marcelo A; Soriano, Vincent V; Ssemwanga, Deogratius; Stanojevic, Maja; Stefani, Mariane A; Sugiura, Wataru; Sungkanuparph, Somnuek; Tanuri, Amilcar; Tee, Kok Keng; Truong, Hong-Ha M; van de Vijver, David AMC; Vidal, Nicole; Yang, Chunfu; Yang, Rongge; Yebra, Gonzalo; Ioannidis, John PA; Vandamme, Anne-Mieke; Shafer, Robert W; (2015) Correction: Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis. PLoS medicine, 12 (6). e1001845-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1001845

Serwanga, Jennifer; Nakiboneka, Ritah; Mugaba, Susan; Magambo, Brian; Ndembi, Nicaise; Gotch, Frances; Kaleebu, Pontiano; (2015) Frequencies of Gag-restricted T-cell escape "footprints" differ across HIV-1 clades A1 and D chronically infected Ugandans irrespective of host HLA B alleles. Vaccine, 33 (14). pp. 1664-1672. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2015.02.037

Sutherland, Katherine A; Goodall, Ruth L; McCormick, Adele; Kapaata, Anne; Lyagoba, Fred; Kaleebu, Pontiano; Thiltgen, Geant; Gilks, Charles F; Spyer, Moira; Kityo, Cissy; +5 more... Pillay, Deenan; Dunn, David; Gupta, Ravindra K; DART Virology Group; DART Trial Team; (2015) Gag-Protease Sequence Evolution Following Protease Inhibitor Monotherapy Treatment Failure in HIV-1 Viruses Circulating in East Africa. AIDS research and human retroviruses, 31 (10). pp. 1032-1037. ISSN 0889-2229 DOI: https://doi.org/10.1089/aid.2015.0138

Sutherland, Katherine A; Parry, Chris M; McCormick, Adele; Kapaata, Anne; Lyagoba, Fred; Kaleebu, Pontiano; Gilks, Charles F; Goodall, Ruth; Spyer, Moira; Kityo, Cissy; +3 more... Pillay, Deenan; Gupta, Ravindra K; DART Virology Group; (2015) Evidence for Reduced Drug Susceptibility without Emergence of Major Protease Mutations following Protease Inhibitor Monotherapy Failure in the SARA Trial. PloS one, 10 (9). e0137834-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0137834

Yebra, Gonzalo; Ragonnet-Cronin, Manon; Ssemwanga, Deogratius; Parry, Chris M; Logue, Christopher H; Cane, Patricia A; Kaleebu, Pontiano; Brown, Andrew J Leigh; (2015) Analysis of the history and spread of HIV-1 in Uganda using phylodynamics. The Journal of general virology, 96 (Pt 7). pp. 1890-1898. ISSN 0022-1317 DOI: https://doi.org/10.1099/vir.0.000107

Kityo, Cissy; Gibb, Diana M; Gilks, Charles F; Goodall, Ruth L; Mambule, Ivan; Kaleebu, Pontiano; Pillay, Deenan; Kasirye, Ronnie; Mugyenyi, Peter; Walker, A Sarah; +2 more... Dunn, David T; DART Trial Team; (2014) High level of viral suppression and low switch rate to second-line antiretroviral therapy among HIV-infected adult patients followed over five years: retrospective analysis of the DART trial. PloS one, 9 (3). e90772-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0090772

Kiwanuka, Noah; Ssetaala, Ali; Nalutaaya, Annet; Mpendo, Juliet; Wambuzi, Matthias; Nanvubya, Annet; Sigirenda, Simon; Kitandwe, Paul Kato; Nielsen, Leslie Elizabeth; Balyegisawa, Apolo; +3 more... Kaleebu, Pontiano; Nalusiba, Josephine; Sewankambo, Nelson Kaulukusi; (2014) High Incidence of HIV-1 Infection in a General Population of Fishing Communities around Lake Victoria, Uganda. PLOS ONE, 9 (5). ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0094932

Thornhill, John; Thornhill, John; Inshaw, Jamie; Oomeer, Soonita; Kaleebu, Pontiano; Cooper, David; Ramjee, Gita; Schechter, Mauro; Tambussi, Giuseppe; Fox, Julie; +5 more... Miro, Jose Maria; Weber, Jonathan; Babiker, Abdel; Porter, Kholoud; Fidler, Sarah; (2014) Enhanced normalisation of CD4/CD8 ratio with early antiretroviral therapy in primary HIV infection. Journal of the International AIDS Society, 17 (4 Supp). 19480-. ISSN 1758-2652 DOI: https://doi.org/10.7448/IAS.17.4.19480

Voronin, Yegor; Mofenson, Lynne M; Cunningham, Coleen K; Fowler, Mary G; Kaleebu, Pontiano; McFarland, Elizabeth J; Safrit, Jeffrey T; Graham, Barney S; Snow, William; (2014) HIV monoclonal antibodies: a new opportunity to further reduce mother-to-child HIV transmission. PLoS medicine, 11 (4). e1001616-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1001616