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ACTwatch Group; Newton, Paul N; Hanson, Kara; Goodman, Catherine; (2017) Do anti-malarials in Africa meet quality standards? The market penetration of non quality-assured artemisinin combination therapy in eight African countries. Malaria journal, 16 (1). 204-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-017-1818-8

Ajileye, Adebisi; Alvarez, Nataly; Merker, Matthias; Walker, Timothy M; Akter, Suriya; Brown, Kerstin; Moradigaravand, Danesh; Schön, Thomas; Andres, Sönke; Schleusener, Viola; +14 more... Omar, Shaheed V; Coll, Francesc; Huang, Hairong; Diel, Roland; Ismail, Nazir; Parkhill, Julian; de Jong, Bouke C; Peto, Tim EA; Crook, Derrick W; Niemann, Stefan; Robledo, Jaime; Smith, E Grace; Peacock, Sharon J; Köser, Claudio U; (2017) Some Synonymous and Nonsynonymous gyrA Mutations in Mycobacterium tuberculosis Lead to Systematic False-Positive Fluoroquinolone Resistance Results with the Hain GenoType MTBDRsl Assays. Antimicrobial agents and chemotherapy, 61 (4). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.02169-16

Atkins, Katherine E; Lafferty, Erin I; Deeny, Sarah R; Davies, Nicholas G; Robotham, Julie V; Jit, Mark; (2017) Use of mathematical modelling to assess the impact of vaccines on antibiotic resistance. The Lancet infectious diseases, 18 (6). e204-e213. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(17)30478-4 Full text not available from this repository.

Aulakh, Alex; Idoko, Patrick; Anderson, Suzanne T; Graham, Wendy; (2017) Caesarean section wound infections and antibiotic use: a retrospective case-series in a tertiary referral hospital in The Gambia. Tropical doctor, 48 (3). pp. 192-199. ISSN 0049-4755 DOI: https://doi.org/10.1177/0049475517739539 Full text not available from this repository.

Baker, David A; Stewart, Lindsay B; Large, Jonathan M; Bowyer, Paul W; Ansell, Keith H; Jiménez-Díaz, María B; El Bakkouri, Majida; Birchall, Kristian; Dechering, Koen J; Bouloc, Nathalie S; +19 more... Coombs, Peter J; Whalley, David; Harding, Denise J; Smiljanic-Hurley, Ela; Wheldon, Mary C; Walker, Eloise M; Dessens, Johannes T; Lafuente, María José; Sanz, Laura M; Gamo, Francisco-Javier; Ferrer, Santiago B; Hui, Raymond; Bousema, Teun; Angulo-Barturén, Iñigo; Merritt, Andy T; Croft, Simon L; Gutteridge, Winston E; Kettleborough, Catherine A; Osborne, Simon A; (2017) A potent series targeting the malarial cGMP-dependent protein kinase clears infection and blocks transmission. Nature communications, 8 (1). 430-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-017-00572-x

Baker, KS; Campos, J; Pichel, M; Della Gaspera, A; Duarte-Martínez, F; Campos-Chacón, E; Bolaños-Acuña, HM; Guzmán-Verri, C; Mather, AE; Diaz Velasco, S; +19 more... Zamudio Rojas, ML; Forbester, JL; Connor, TR; Keddy, KH; Smith, AM; López de Delgado, EA; Angiolillo, G; Cuaical, N; Fernández, J; Aguayo, C; Morales Aguilar, M; Valenzuela, C; Morales Medrano, AJ; Sirok, A; Weiler Gustafson, N; Diaz Guevara, PL; Montaño, LA; Perez, E; Thomson, NR; (2017) Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses. Clinical microbiology and infection, 23 (11). pp. 845-853. ISSN 1198-743X DOI: https://doi.org/10.1016/j.cmi.2017.03.021

Basta, Nicole E; Berthe, Abdoulaye; Keita, Mahamadou; Onwuchekwa, Uma; Tamboura, Boubou; Traore, Awa; Hassan-King, Musa; Manigart, Olivier; Nascimento, Maria; Stuart, James M; +11 more... Trotter, Caroline; Blake, Jayne; Carr, Anthony D; Gray, Stephen J; Newbold, Lynne S; Deng, Yangqing; Wolfson, Julian; Halloran, M Elizabeth; Greenwood, Brian; Borrow, Ray; Sow, Samba O; (2017) Meningococcal carriage within households in the African meningitis belt: A longitudinal pilot study. The Journal of infection, 76 (2). pp. 140-148. ISSN 0163-4453 DOI: https://doi.org/10.1016/j.jinf.2017.11.006

Bednarska, Natalia G; Wren, Brendan W; Willcocks, Sam J; (2017) The importance of the glycosylation of antimicrobial peptides: natural and synthetic approaches. Drug discovery today, 22 (6). pp. 919-926. ISSN 1359-6446 DOI: https://doi.org/10.1016/j.drudis.2017.02.001

Bhambra, AS; Ruparelia, KC; Tan, HL; Tasdemir, D; Burrell-Saward, H; Yardley, V; Beresford, KJ; Arroo, RR; (2017) Synthesis and antitrypanosomal activities of novel pyridylchalcones. European journal of medicinal chemistry, 128. pp. 213-218. ISSN 0223-5234 DOI: https://doi.org/10.1016/j.ejmech.2017.01.027

Bojang, Abdoulie; Kendall, Lindsay; Usuf, Effua; Egere, Uzochukwu; Mulwa, Sarah; Antonio, Martin; Greenwood, Brian; Hill, Philip C; Roca, Anna; (2017) Prevalence and risk factors for Staphylococcus aureus nasopharyngeal carriage during a PCV trial. BMC infectious diseases, 17 (1). 588-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2685-1

Bojang, Ebrima; Jafali, James; Perreten, Vincent; Hart, John; Harding-Esch, Emma M; Sillah, Ansumana; Mabey, David CW; Holland, Martin J; Bailey, Robin L; Roca, Anna; +1 more... Burr, Sarah E; (2017) Short-term increase in prevalence of nasopharyngeal carriage of macrolide-resistant Staphylococcus aureus following mass drug administration with azithromycin for trachoma control. BMC microbiology, 17 (1). 75-. ISSN 1471-2180 DOI: https://doi.org/10.1186/s12866-017-0982-x

Bossé, Janine T; Li, Yanwen; Rogers, Jon; Fernandez Crespo, Roberto; Li, Yinghui; Chaudhuri, Roy R; Holden, Matthew TG; Maskell, Duncan J; Tucker, Alexander W; Wren, Brendan W; +2 more... Rycroft, Andrew N; Langford, Paul R; (2017) Whole Genome Sequencing for Surveillance of Antimicrobial Resistance in Actinobacillus pleuropneumoniae. Frontiers in microbiology, 8 (MAR). 311-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2017.00311

Brand, Stephen; Ko, Eun Jung; Viayna, Elisabet; Thompson, Stephen; Spinks, Daniel; Thomas, Michael; Sandberg, Lars; Francisco, Amanda F; Jayawardhana, Shiromani; Smith, Victoria C; +26 more... Jansen, Chimed; De Rycker, Manu; Thomas, John; MacLean, Lorna; Osuna-Cabello, Maria; Riley, Jennifer; Scullion, Paul; Stojanovski, Laste; Simeons, Frederick RC; Epemolu, Ola; Shishikura, Yoko; Crouch, Sabrinia D; Bakshi, Tania S; Nixon, Christopher J; Reid, Iain H; Hill, Alan P; Underwood, Tim Z; Hindley, Sean J; Robinson, Sharon A; Kelly, John M; Fiandor, Jose M; Wyatt, Paul G; Marco, Maria; Miles, Timothy J; Read, Kevin D; Gilbert, Ian H; (2017) Discovery and Optimization of 5-Amino-1,2,3-triazole-4-carboxamide Series against Trypanosoma cruzi. Journal of medicinal chemistry, 60 (17). pp. 7284-7299. ISSN 0022-2623 DOI: https://doi.org/10.1021/acs.jmedchem.7b00463

Bricio-Moreno, Laura; Ebruke, Chinelo; Chaguza, Chrispin; Cornick, Jennifer; Kwambana-Adams, Brenda; Yang, Marie; Mackenzie, Grant; Wren, Brendan W; Everett, Dean; Antonio, Martin; +1 more... Kadioglu, Aras; (2017) Comparative Genomic Analysis and In Vivo Modeling of Streptococcus pneumoniae ST3081 and ST618 Isolates Reveal Key Genetic and Phenotypic Differences Contributing to Clonal Replacement of Serotype 1 in The Gambia. The Journal of infectious diseases, 216 (10). pp. 1318-1327. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jix472

Brodrick, Hayley J; Raven, Kathy E; Kallonen, Teemu; Jamrozy, Dorota; Blane, Beth; Brown, Nicholas M; Martin, Veronique; Török, M Estée; Parkhill, Julian; Peacock, Sharon J; (2017) Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom. Genome medicine, 9 (1). 70-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-017-0457-6

Burchett, Helen ED; Leurent, Baptiste; Baiden, Frank; Baltzell, Kimberly; Björkman, Anders; Bruxvoort, Katia; Clarke, Siân; DiLiberto, Deborah; Elfving, Kristina; Goodman, Catherine; +15 more... Hopkins, Heidi; Lal, Sham; Liverani, Marco; Magnussen, Pascal; Mårtensson, Andreas; Mbacham, Wilfred; Mbonye, Anthony; Onwujekwe, Obinna; Roth Allen, Denise; Shakely, Delér; Staedke, Sarah; Vestergaard, Lasse S; Whitty, Christopher JM; Wiseman, Virginia; Chandler, Clare IR; (2017) Improving prescribing practices with rapid diagnostic tests (RDTs): synthesis of 10 studies to explore reasons for variation in malaria RDT uptake and adherence. BMJ open, 7 (3). e012973-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2016-012973

Burrell-Saward, H; Harris, AJ; de LaFlor, R; Sallam, H; Alavijeh, MS; Ward, TH; Croft, SL; (2017) Dose-dependent effect and pharmacokinetics of fexinidazole and its metabolites in a mouse model of human african trypanosomiasis. International journal of antimicrobial agents, 50 (2). pp. 203-209. ISSN 0924-8579 DOI: https://doi.org/10.1016/j.ijantimicag.2017.01.038

Cairns, MD; Preston, MD; Hall, CL; Gerding, DN; Hawkey, PM; Kato, H; Kim, H; Kuijper, EJ; Lawley, TD; Pituch, H; +8 more... Reid, S; Kullin, B; Riley, TV; Solomon, K; Tsai, PJ; Weese, JS; Stabler, RA; Wren, BW; (2017) Correction for Cairns et al., "Comparative Genome Analysis and Global Phylogeny of the Toxin Variant Clostridium difficile PCR Ribotype 017 Reveals the Evolution of Two Independent Sublineages". Journal of clinical microbiology, 55 (6). 1971-. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.00487-17 Full text not available from this repository.

Campos, Mônica C; Phelan, Jody; Francisco, Amanda F; Taylor, Martin C; Lewis, Michael D; Pain, Arnab; Clark, Taane G; Kelly, John M; (2017) Genome-wide mutagenesis and multi-drug resistance in American trypanosomes induced by the front-line drug benznidazole. Scientific reports, 7 (1). 14407-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-14986-6

Carmel, K; Gundogdu, O; Scates, P; Linton, M; Laurette, P; Stabler, R; Dorrell, N; Wren, WB; Corcionivoschi, N; (2017) The in vitro and in vivo effect of Carvacrol in preventing Campylobacter infection, colonisation and improve chicken broilers productivity. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648033 Full text not available from this repository.

Chandler, Clare IR; Webb, Emily L; Maiteki-Sebuguzi, Catherine; Nayiga, Susan; Nabirye, Christine; DiLiberto, Deborah D; Ssemmondo, Emmanuel; Dorsey, Grant; Kamya, Moses R; Staedke, Sarah G; (2017) The impact of an intervention to introduce malaria rapid diagnostic tests on fever case management in a high transmission setting in Uganda: A mixed-methods cluster-randomized trial (PRIME). PloS one, 12 (3). e0170998-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0170998

Chewapreecha, C; Holden, MT; Vehkala, M; Välimäki, N; Yang, Z; Harris, SR; Mather, AE; Tuanyok, A; De Smet, B; Le Hello, S; +13 more... Bizet, C; Mayo, M; Wuthiekanun, V; Limmathurotsakul, D; Phetsouvanh, R; Spratt, BG; Corander, J; Keim, P; Dougan, G; Dance, DA; Currie, BJ; Parkhill, J; Peacock, SJ; (2017) Global and regional dissemination and evolution of Burkholderia pseudomallei. Nature microbiology, 2. p. 16263. ISSN 2058-5276 DOI: https://doi.org/10.1038/nmicrobiol.2016.263

Coll, Francesc; Harrison, Ewan M; Toleman, Michelle S; Reuter, Sandra; Raven, Kathy E; Blane, Beth; Palmer, Beverley; Kappeler, A Ruth M; Brown, Nicholas M; Török, M Estée; +2 more... Parkhill, Julian; Peacock, Sharon J; (2017) Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community. Science translational medicine, 9 (413). eaak9745-eaak9745. ISSN 1946-6234 DOI: https://doi.org/10.1126/scitranslmed.aak9745

Cooper, Laura V; Boukary, Rahamatou Moustapha; Aseffa, Abraham; Mihret, Wude; Collard, Jean-Marc; Daugla, Doumagoum; Hodgson, Abraham; Sokhna, Cheikh; Omotara, Babatunji; Sow, Samba; +9 more... Quaye, Stephen Laryea; Diallo, Kanny; Manigart, Olivier; Maiden, Martin CJ; Findlow, Helen; Borrow, Ray; Stuart, James M; Greenwood, Brian M; Trotter, Caroline L; (2017) Investigation of correlates of protection against pharyngeal carriage of Neisseria meningitidis genogroups W and Y in the African meningitis belt. PloS one, 12 (8). e0182575-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0182575

Cox, Helen; Dickson-Hall, Lindy; Ndjeka, Norbert; Van't Hoog, Anja; Grant, Alison; Cobelens, Frank; Stevens, Wendy; Nicol, Mark; (2017) Delays and loss to follow-up before treatment of drug-resistant tuberculosis following implementation of Xpert MTB/RIF in South Africa: A retrospective cohort study. PLoS medicine, 14 (2). e1002238-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1002238

Degefie Hailegebriel, Tedbabe; Mulligan, Brian; Cousens, Simon; Mathewos, Bereket; Wall, Steve; Bekele, Abeba; Russell, Jeanne; Sitrin, Deborah; Tensou, Biruk; Lawn, Joy; +6 more... de Graft Johnson, Joseph; Legesse, Hailemariam; Hailu, Sirak; Nigussie, Assaye; Worku, Bogale; Baqui, Abdullah; (2017) Effect on Neonatal Mortality of Newborn Infection Management at Health Posts When Referral Is Not Possible: A Cluster-Randomized Trial in Rural Ethiopia. Global health, science and practice, 5 (2). pp. 202-216. ISSN 2169-575X DOI: https://doi.org/10.9745/GHSP-D-16-00312

Dheda, Keertan; Gumbo, Tawanda; Maartens, Gary; Dooley, Kelly E; McNerney, Ruth; Murray, Megan; Furin, Jennifer; Nardell, Edward A; London, Leslie; Lessem, Erica; +32 more... Theron, Grant; van Helden, Paul; Niemann, Stefan; Merker, Matthias; Dowdy, David; Van Rie, Annelies; Siu, Gilman KH; Pasipanodya, Jotam G; Rodrigues, Camilla; Clark, Taane G; Sirgel, Frik A; Esmail, Aliasgar; Lin, Hsien-Ho; Atre, Sachin R; Schaaf, H Simon; Chang, Kwok Chiu; Lange, Christoph; Nahid, Payam; Udwadia, Zarir F; Horsburgh, C Robert; Churchyard, Gavin J; Menzies, Dick; Hesseling, Anneke C; Nuermberger, Eric; McIlleron, Helen; Fennelly, Kevin P; Goemaere, Eric; Jaramillo, Ernesto; Low, Marcus; Jara, Carolina Morán; Padayatchi, Nesri; Warren, Robin M; (2017) The epidemiology, pathogenesis, transmission, diagnosis, and management of multidrug-resistant, extensively drug-resistant, and incurable tuberculosis. The lancet Respiratory medicine, 5 (4). pp. 291-360. ISSN 2213-2600 DOI: https://doi.org/10.1016/S2213-2600(17)30079-6 Full text not available from this repository.

Diez Benavente, Ernest; Ward, Zoe; Chan, Wilson; Mohareb, Fady R; Sutherland, Colin J; Roper, Cally; Campino, Susana; Clark, Taane G; (2017) Genomic variation in Plasmodium vivax malaria reveals regions under selective pressure. PloS one, 12 (5). e0177134-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0177134

Driscoll, Amanda J; Deloria Knoll, Maria; Hammitt, Laura L; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; O'Brien, Katherine L; +26 more... Scott, J Anthony G; Thea, Donald M; Howie, Stephen RC; Adrian, Peter V; Ahmed, Dilruba; DeLuca, Andrea N; Ebruke, Bernard E; Gitahi, Caroline; Higdon, Melissa M; Kaewpan, Anek; Karani, Angela; Karron, Ruth A; Mazumder, Razib; McLellan, Jessica; Moore, David P; Mwananyanda, Lawrence; Park, Daniel E; Prosperi, Christine; Rhodes, Julia; Saifullah, Md; Seidenberg, Phil; Sow, Samba O; Tamboura, Boubou; Zeger, Scott L; Murdoch, David R; PERCH Study Group; (2017) The Effect of Antibiotic Exposure and Specimen Volume on the Detection of Bacterial Pathogens in Children With Pneumonia. Clinical infectious diseases, 64 (suppl_). S368-S377. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix101

Feikin, Daniel R; Hammitt, Laura L; Murdoch, David R; O'Brien, Katherine L; Scott, J Anthony G; (2017) The Enduring Challenge of Determining Pneumonia Etiology in Children: Considerations for Future Research Priorities. Clinical infectious diseases, 64 (suppl_). S188-S196. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix143

Firoz, Tabassum; Woodd, Susannah L; (2017) Maternal sepsis: Opportunity for improvement. Obstetric medicine, 10 (4). pp. 174-176. ISSN 1753-495X DOI: https://doi.org/10.1177/1753495X17704362

Flasche, Stefan; Ojal, John; Le Polain de Waroux, Olivier; Otiende, Mark; O'Brien, Katherine L; Kiti, Moses; Nokes, D James; Edmunds, W John; Scott, J Anthony G; (2017) Assessing the efficiency of catch-up campaigns for the introduction of pneumococcal conjugate vaccine: a modelling study based on data from PCV10 introduction in Kilifi, Kenya. BMC medicine, 15 (1). 113-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-017-0882-9

Fookes, Maria C; Hadfield, James; Harris, Simon; Parmar, Surendra; Unemo, Magnus; Jensen, Jørgen S; Thomson, Nicholas R; (2017) Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure. BMC genomics, 18 (1). 993-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4399-6

Francisco, Amanda F; Jayawardhana, Shiromani; Lewis, Michael D; Taylor, Martin C; Kelly, John M; (2017) Biological factors that impinge on Chagas disease drug development. Parasitology, 144 (14). pp. 1871-1880. ISSN 0031-1820 DOI: https://doi.org/10.1017/S0031182017001469

Gomes, Ana Rita; Ravenhall, Matt; Benavente, Ernest Diez; Talman, Arthur; Sutherland, Colin; Roper, Cally; Clark, Taane G; Campino, Susana; (2017) Genetic diversity of next generation antimalarial targets: A baseline for drug resistance surveillance programmes. International journal for parasitology Drugs and drug resistance, 7 (2). pp. 174-180. ISSN 2211-3207 DOI: https://doi.org/10.1016/j.ijpddr.2017.03.001

Gordon, NC; Pichon, B; Golubchik, T; Wilson, DJ; Paul, J; Blanc, DS; Cole, K; Collins, J; Cortes, N; Cubbon, M; +14 more... Gould, FK; Jenks, PJ; Llewelyn, M; Nash, JQ; Orendi, JM; Paranthaman, K; Price, JR; Senn, L; Thomas, HL; Wyllie, S; Crook, DW; Peto, TEA; Walker, AS; Kearns, AM; (2017) Whole-Genome Sequencing Reveals the Contribution of Long-Term Carriers in Staphylococcus aureus Outbreak Investigation. Journal of clinical microbiology, 55 (7). pp. 2188-2197. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.00363-17

Grandjean, Louis; Gilman, Robert H; Iwamoto, Tomatada; Köser, Claudio U; Coronel, Jorge; Zimic, Mirko; Török, M Estee; Ayabina, Diepreye; Kendall, Michelle; Fraser, Christophe; +5 more... Harris, Simon; Parkhill, Julian; Peacock, Sharon J; Moore, David AJ; Colijn, Caroline; (2017) Convergent evolution and topologically disruptive polymorphisms among multidrug-resistant tuberculosis in Peru. PloS one, 12 (12). e0189838-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0189838

Green, Stuart A; Bell, Derek; Mays, Nicholas; (2017) Identification of factors that support successful implementation of care bundles in the acute medical setting: a qualitative study. BMC health services research, 17 (1). 120-. ISSN 1472-6963 DOI: https://doi.org/10.1186/s12913-017-2070-1

Greenwood, B; (2017) Elimination of malaria: halfway there. Transactions of the Royal Society of Tropical Medicine and Hygiene. pp. 1-2. ISSN 0035-9203 DOI: https://doi.org/10.1093/trstmh/trx012

Göhler, Andre; Trung, Trinh Thanh; Hopf, Verena; Kohler, Christian; Hartleib, Jörg; Wuthiekanun, Vanaporn; Peacock, Sharon J; Limmathurotsakul, Direk; Tuanyok, Apichai; Steinmetz, Ivo; (2017) Multitarget Quantitative PCR Improves Detection and Predicts Cultivability of the Pathogen Burkholderia pseudomallei. Applied and environmental microbiology, 83 (8). ISSN 0099-2240 DOI: https://doi.org/10.1128/AEM.03212-16

Hadfield, James; Harris, Simon R; Seth-Smith, Helena MB; Parmar, Surendra; Andersson, Patiyan; Giffard, Philip M; Schachter, Julius; Moncada, Jeanne; Ellison, Louise; Vaulet, María Lucía Gallo; +28 more... Fermepin, Marcelo Rodríguez; Radebe, Frans; Mendoza, Suyapa; Ouburg, Sander; Morré, Servaas A; Sachse, Konrad; Puolakkainen, Mirja; Korhonen, Suvi J; Sonnex, Chris; Wiggins, Rebecca; Jalal, Hamid; Brunelli, Tamara; Casprini, Patrizia; Pitt, Rachel; Ison, Cathy; Savicheva, Alevtina; Shipitsyna, Elena; Hadad, Ronza; Kari, Laszlo; Burton, Matthew J; Mabey, David; Solomon, Anthony W; Lewis, David; Marsh, Peter; Unemo, Magnus; Clarke, Ian N; Parkhill, Julian; Thomson, Nicholas R; (2017) Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome research, 27 (7). pp. 1220-1229. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.212647.116

Hanefeld, Johanna; Khan, Mishal; Tomson, Göran; Smith, Richard; (2017) Trade is central to achieving the sustainable development goals: a case study of antimicrobial resistance. BMJ (Clinical research ed), 358. j3505-. ISSN 0959-8138 DOI: https://doi.org/10.1136/bmj.j3505

Harding-Esch, Emma M; Kadimpeul, Julbert; Sarr, Boubacar; Sane, Awa; Badji, Souleymane; Laye, Mass; Sillah, Ansumana; Burr, Sarah E; MacLeod, David; Last, Anna R; +3 more... Holland, Martin J; Mabey, David C; Bailey, Robin L; (2017) Population-based prevalence survey of follicular trachoma and trachomatous trichiasis in the Casamance region of Senegal. BMC public health, 18 (1). 62-. ISSN 1471-2458 DOI: https://doi.org/10.1186/s12889-017-4605-0

Harrison, Ewan M; Coll, Francesc; Toleman, Michelle S; Blane, Beth; Brown, Nicholas M; Török, M Estee; Parkhill, Julian; Peacock, Sharon J; (2017) Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England. Scientific reports, 7 (1). 7406-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-07662-2

Heyckendorf, Jan; Andres, Sönke; Köser, Claudio U; Olaru, Ioana D; Schön, Thomas; Sturegård, Erik; Beckert, Patrick; Schleusener, Viola; Kohl, Thomas A; Hillemann, Doris; +6 more... Moradigaravand, Danesh; Parkhill, Julian; Peacock, Sharon J; Niemann, Stefan; Lange, Christoph; Merker, Matthias; (2017) What Is Resistance? Impact of Phenotypic versus Molecular Drug Resistance Testing on Therapy for Multi- and Extensively Drug-Resistant Tuberculosis. Antimicrobial agents and chemotherapy, 62 (2). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.01550-17

Hopkins, Heidi; Bruxvoort, Katia J; Cairns, Matthew E; Chandler, Clare IR; Leurent, Baptiste; Ansah, Evelyn K; Baiden, Frank; Baltzell, Kimberly A; Björkman, Anders; Burchett, Helen ED; +27 more... Clarke, Siân E; DiLiberto, Deborah D; Elfving, Kristina; Goodman, Catherine; Hansen, Kristian S; Kachur, S Patrick; Lal, Sham; Lalloo, David G; Leslie, Toby; Magnussen, Pascal; Jefferies, Lindsay Mangham; Mårtensson, Andreas; Mayan, Ismail; Mbonye, Anthony K; Msellem, Mwinyi I; Onwujekwe, Obinna E; Owusu-Agyei, Seth; Reyburn, Hugh; Rowland, Mark W; Shakely, Delér; Vestergaard, Lasse S; Webster, Jayne; Wiseman, Virginia L; Yeung, Shunmay; Schellenberg, David; Staedke, Sarah G; Whitty, Christopher JM; (2017) Impact of introduction of rapid diagnostic tests for malaria on antibiotic prescribing: analysis of observational and randomised studies in public and private healthcare settings. BMJ (Clinical research ed), 356. j1054-. ISSN 0959-8138 DOI: https://doi.org/10.1136/bmj.j1054

Hutchinson, Eleanor; Hutchison, Coll; Lal, Sham; Hansen, Kristian; Kayendeke, Miriam; Nabirye, Christine; Magnussen, Pascal; Clarke, Siân E; Mbonye, Anthony; Chandler, Clare IR; (2017) Introducing rapid tests for malaria into the retail sector: what are the unintended consequences? BMJ global health, 2 (1). e000067-. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2016-000067

Hutchison, C; Khan, MS; Yoong, J; Lin, X; Coker, RJ; (2017) Financial barriers and coping strategies: a qualitative study of accessing multidrug-resistant tuberculosis and tuberculosis care in Yunnan, China. BMC public health, 17 (1). 221-. ISSN 1471-2458 DOI: https://doi.org/10.1186/s12889-017-4089-y

Jamrozy, Dorota; Coll, Francesc; Mather, Alison E; Harris, Simon R; Harrison, Ewan M; MacGowan, Alasdair; Karas, Andreas; Elston, Tony; Estée Török, M; Parkhill, Julian; +1 more... Peacock, Sharon J; (2017) Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events. BMC genomics, 18 (1). 684-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4065-z

Johnson, Rebecca; Ravenhall, Matt; Pickard, Derek; Dougan, Gordon; Byrne, Alexander; Frankel, Gad; (2017) Comparison of Salmonella enterica Serovars Typhi and Typhimurium Reveals Typhoidal Serovar-Specific Responses to Bile. Infection and immunity, 86 (3). e00490-e00417. ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.00490-17

Jovel, Irina T; Björkman, Anders; Roper, Cally; Mårtensson, Andreas; Ursing, Johan; (2017) Unexpected selections of Plasmodium falciparum polymorphisms in previously treatment-naïve areas after monthly presumptive administration of three different anti-malarial drugs in Liberia 1976-78. Malaria journal, 16 (1). 113-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-017-1747-6

Kafy, Hmooda Toto; Ismail, Bashir Adam; Mnzava, Abraham Peter; Lines, Jonathan; Abdin, Mogahid Shiekh Eldin; Eltaher, Jihad Sulieman; Banaga, Anuar Osman; West, Philippa; Bradley, John; Cook, Jackie; +8 more... Thomas, Brent; Subramaniam, Krishanthi; Hemingway, Janet; Knox, Tessa Bellamy; Malik, Elfatih M; Yukich, Joshua O; Donnelly, Martin James; Kleinschmidt, Immo; (2017) Impact of insecticide resistance in Anopheles arabiensis on malaria incidence and prevalence in Sudan and the costs of mitigation. Proceedings of the National Academy of Sciences of the United States of America, 114 (52). E11267-E11275. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1713814114

Kanji, A; Hasan, R; Ali, A; Zaver, A; Zhang, Y; Imtiaz, K; Shi, W; Clark, TG; McNerney, R; Phelan, J; +3 more... Rao, S; Shafiq, S; Hasan, Z; (2017) Single nucleotide polymorphisms in efflux pumps genes in extensively drug resistant Mycobacterium tuberculosis isolates from Pakistan. Tuberculosis (Edinburgh, Scotland), 107. pp. 20-30. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2017.07.012

Kanji, Akbar; Hasan, Rumina; Ali, Asho; Zaver, Ambreen; Zhang, Ying; Imtiaz, Kehkashan; Shi, Wanliang; Clark, Taane G; McNerney, Ruth; Phelan, Jody; +3 more... Rao, Shoaib; Shafiq, Samreen; Hasan, Zahra; (2017) Single nucleotide polymorphisms in efflux pumps genes in extensively drug resistant Mycobacterium tuberculosis isolates from Pakistan. Tuberculosis (Edinburgh, Scotland), 107 (Supple). pp. 20-30. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2017.07.012 Full text not available from this repository.

Kelly, C; Gundogdu, O; Pircalabioru, G; Cean, A; Scates, P; Linton, M; Pinkerton, L; Magowan, E; Stef, L; Simiz, E; +6 more... Pet, I; Stewart, S; Stabler, R; Wren, B; Dorrell, N; Corcionivoschi, N; (2017) The In Vitro and In Vivo Effect of Carvacrol in Preventing Campylobacter Infection, Colonization and in Improving Productivity of Chicken Broilers. Foodborne pathogens and disease. ISSN 1535-3141 DOI: https://doi.org/10.1089/fpd.2016.2265

Khan, Mishal S; Hutchison, Coll; Coker, Richard J; (2017) Risk factors that may be driving the emergence of drug resistance in tuberculosis patients treated in Yangon, Myanmar. PloS one, 12 (6). e0177999-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0177999

Khan, Mishal S; Hutchison, Coll; Coker, Richard J; Yoong, Joanne; Hane, Khaung M; Innes, Anh L; Khaing, Tin M; Aung, Sithu; (2017) Preventing emergence of drug resistant tuberculosis in Myanmar's transitioning health system. Health policy and planning, 32 (suppl_). i43-i50. ISSN 0268-1080 DOI: https://doi.org/10.1093/heapol/czx093 Full text not available from this repository.

Khan, Mishal S; Meghani, Ankita; Liverani, Marco; Roychowdhury, Imara; Parkhurst, Justin; (2017) How do external donors influence national health policy processes? Experiences of domestic policy actors in Cambodia and Pakistan. Health policy and planning, 33 (2). pp. 215-223. ISSN 0268-1080 DOI: https://doi.org/10.1093/heapol/czx145

Knetsch, CW; Kumar, N; Forster, SC; Connor, TR; Browne, HP; Harmanus, C; Sanders, IM; Harris, SR; Turner, L; Morris, T; +13 more... Perry, M; Miyajima, F; Roberts, P; Pirmohamed, M; Songer, JG; Weese, JS; Indra, A; Corver, J; Rupnik, M; Wren, BW; Riley, TV; Kuijper, EJ; Lawley, TD; (2017) Zoonotic Transfer of Clostridium difficile Harboring Antimicrobial Resistance between Farm Animals and Humans. Journal of clinical microbiology, 56 (3). ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01384-17

Knight, Gwenan M; Costelloe, Ceire; Murray, Kris A; Robotham, Julie V; Atun, Rifat; Holmes, Alison H; (2017) Addressing the Unknowns of Antimicrobial Resistance: Quantifying and Mapping the Drivers of Burden. Clinical infectious diseases, 66 (4). pp. 612-616. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix765

Koniordou, Markela; Patterson, Stephen; Wyllie, Susan; Seifert, Karin; (2017) Snapshot Profiling of the Antileishmanial Potency of Lead Compounds and Drug Candidates against Intracellular Leishmania donovani Amastigotes, with a Focus on Human-Derived Host Cells. Antimicrobial agents and chemotherapy, 61 (3). e01228-e01216. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.01228-16

Kousoulis, Antonis A; Tsoucalas, Gregory; (2017) Infection, contagion and causality in Colonial Britain: the 1889-90 influenza pandemic and the British Medical Journal. Le infezioni in medicina, 25 (3). pp. 285-291. ISSN 1124-9390 https://researchonline.lshtm.ac.uk/id/eprint/4468726

Last, Anna R; Burr, Sarah E; Harding-Esch, Emma; Cassama, Eunice; Nabicassa, Meno; Roberts, Chrissy H; Mabey, David CW; Holland, Martin J; Bailey, Robin L; (2017) The impact of a single round of community mass treatment with azithromycin on disease severity and ocular Chlamydia trachomatis load in treatment-naïve trachoma-endemic island communities in West Africa. Parasites & vectors, 10 (1). 624-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-017-2566-x

Le Doare, Kirsty; O'Driscoll, Megan; Turner, Kim; Seedat, Farah; Russell, Neal J; Seale, Anna C; Heath, Paul T; Lawn, Joy E; Baker, Carol J; Bartlett, Linda; +11 more... Cutland, Clare; Gravett, Michael G; Ip, Margaret; Madhi, Shabir A; Rubens, Craig E; Saha, Samir K; Schrag, Stephanie; Sobanjo-Ter Meulen, Ajoke; Vekemans, Johan; Kampmann, Beate; GBS Intrapartum Antibiotic Investigator Group; (2017) Intrapartum Antibiotic Chemoprophylaxis Policies for the Prevention of Group B Streptococcal Disease Worldwide: Systematic Review. Clinical infectious diseases, 65 (suppl_). S143-S151. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix654

Le Rutte, Epke A; Chapman, Lloyd AC; Coffeng, Luc E; Jervis, Sarah; Hasker, Epco C; Dwivedi, Shweta; Karthick, Morchan; Das, Aritra; Mahapatra, Tanmay; Chaudhuri, Indrajit; +5 more... Boelaert, Marleen C; Medley, Graham F; Srikantiah, Sridhar; Hollingsworth, T Deirdre; de Vlas, Sake J; (2017) Elimination of visceral leishmaniasis in the Indian subcontinent: a comparison of predictions from three transmission models. Epidemics, 18. pp. 67-80. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2017.01.002

Leung, Kathy; Jit, Mark; Lau, Eric HY; Wu, Joseph T; (2017) Social contact patterns relevant to the spread of respiratory infectious diseases in Hong Kong. Scientific reports, 7 (1). 7974-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-08241-1

Loh, Lip Nam; McCarthy, Elizabeth MC; Narang, Priyanka; Khan, Naveed A; Ward, Theresa H; (2017) Escherichia coli K1 utilizes host macropinocytic pathways for invasion of brain microvascular endothelial cells. Traffic (Copenhagen, Denmark), 18 (11). pp. 733-746. ISSN 1398-9219 DOI: https://doi.org/10.1111/tra.12508

Ludden, Catherine; Reuter, Sandra; Judge, Kim; Gouliouris, Theodore; Blane, Beth; Coll, Francesc; Naydenova, Plamena; Hunt, Martin; Tracey, Alan; Hopkins, Katie L; +4 more... Brown, Nicholas M; Woodford, Neil; Parkhill, Julian; Peacock, Sharon J; (2017) Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing. Microbial genomics, 3 (7). e000114-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000114

Lynch, Caroline A; Pearce, Richard; Pota, Hirva; Egwang, Connie; Egwang, Thomas; Bhasin, Amit; Cox, Jonathan; Abeku, Tarekegn A; Roper, Cally; (2017) Travel and the emergence of high-level drug resistance in Plasmodium falciparum in southwest Uganda: results from a population-based study. Malaria journal, 16 (1). 150-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-017-1812-1

Macdonald, Sarah E; Nolan, Matthew J; Harman, Kimberley; Boulton, Kay; Hume, David A; Tomley, Fiona M; Stabler, Richard A; Blake, Damer P; (2017) Effects of Eimeria tenella infection on chicken caecal microbiome diversity, exploring variation associated with severity of pathology. PloS one, 12 (9). e0184890-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0184890

Macedo, Juan P; Currier, Rachel B; Wirdnam, Corina; Horn, David; Alsford, Sam; Rentsch, Doris; (2017) Ornithine uptake and the modulation of drug sensitivity in Trypanosoma brucei. FASEB journal, 31 (10). pp. 4649-4660. ISSN 0892-6638 DOI: https://doi.org/10.1096/fj.201700311R

Magwenzi, Marcelyn T; Gudza-Mugabe, Muchaneta; Mujuru, Hilda A; Dangarembizi-Bwakura, Mutsa; Robertson, Valerie; Aiken, Alexander M; (2017) Carriage of antibiotic-resistant Enterobacteriaceae in hospitalised children in tertiary hospitals in Harare, Zimbabwe. Antimicrobial resistance and infection control, 6 (1). 10-. ISSN 2047-2994 DOI: https://doi.org/10.1186/s13756-016-0155-y

Marks, Michael; Mabey, David; (2017) Single-dose azithromycin to treat latent yaws. The Lancet Global health, 5 (12). e1172-e1173. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(17)30424-2

Marks, Michael; Mabey, David Cw; (2017) The introduction of syphilis point of care tests in resource limited settings. Expert review of molecular diagnostics, 17 (4). pp. 321-325. ISSN 1473-7159 DOI: https://doi.org/10.1080/14737159.2017.1303379

Mawa, PA; (2017) The Impact of Maternal Infection with Mycobacterium tuberculosis on the Infant Response to BCG Immunisation. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.03928321

Meredith, Emma Louise; Kumar, Ambika; Konno, Aya; Szular, Joanna; Alsford, Sam; Seifert, Karin; Horn, David; Wilkinson, Shane R; (2017) Distinct activation mechanisms trigger the trypanocidal activity of DNA damaging prodrugs. Molecular microbiology, 106 (2). pp. 207-222. ISSN 0950-382X DOI: https://doi.org/10.1111/mmi.13767

Miari, Victoria F; Solanki, Priya; Hleba, Yonek; Stabler, Richard A; Heap, John T; (2017) In Vitro Susceptibility to Closthioamide among Clinical and Reference Strains of Neisseria gonorrhoeae. Antimicrobial agents and chemotherapy, 61 (10). e00929-17. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.00929-17

Miller, Rosalind; Goodman, Catherine; (2017) Do chain pharmacies perform better than independent pharmacies? Evidence from a standardised patient study of the management of childhood diarrhoea and suspected tuberculosis in urban India. BMJ global health, 2 (3). e000457-. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2017-000457

Moradigaravand, Danesh; Gouliouris, Theodore; Blane, Beth; Naydenova, Plamena; Ludden, Catherine; Crawley, Charles; Brown, Nicholas M; Török, M Estée; Parkhill, Julian; Peacock, Sharon J; (2017) Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients. Genome medicine, 9 (1). 119-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-017-0507-0

Moradigaravand, Danesh; Jamrozy, Dorota; Mostowy, Rafal; Anderson, Annaliesa; Nickerson, Emma K; Thaipadungpanit, Janjira; Wuthiekanun, Vanaporn; Limmathurotsakul, Direk; Tandhavanant, Sarunporn; Wikraiphat, Chanthiwa; +10 more... Wongsuvan, Gumphol; Teerawattanasook, Nittaya; Jutrakul, Yaowaruk; Srisurat, Nuttiya; Chaimanee, Prajuab; Eoin West, T; Blane, Beth; Parkhill, Julian; Chantratita, Narisara; Peacock, Sharon J; (2017) Evolution of the Staphylococcus argenteus ST2250 Clone in Northeastern Thailand Is Linked with the Acquisition of Livestock-Associated Staphylococcal Genes. mBio, 8 (4). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.00802-17

Moradigaravand, Danesh; Martin, Veronique; Peacock, Sharon J; Parkhill, Julian; (2017) Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland. mBio, 8 (1). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.01976-16

Musicha, Patrick; Feasey, Nicholas A; Cain, Amy K; Kallonen, Teemu; Chaguza, Chrispin; Peno, Chikondi; Khonga, Margaret; Thompson, Sarah; Gray, Katherine J; Mather, Alison E; +4 more... Heyderman, Robert S; Everett, Dean B; Thomson, Nicholas R; Msefula, Chisomo L; (2017) Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting. The Journal of antimicrobial chemotherapy, 72 (6). pp. 1602-1609. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkx058

Muthumbi, Esther; Lowe, Brett S; Muyodi, Cyprian; Getambu, Esther; Gleeson, Fergus; Scott, J Anthony G; (2017) Risk factors for community-acquired pneumonia among adults in Kenya: a case-control study. Pneumonia (Nathan Qld), 9 (1). 17-. ISSN 2200-6133 DOI: https://doi.org/10.1186/s41479-017-0041-2

Nakatani, Yoshio; Opel-Reading, Helen K; Merker, Matthias; Machado, Diana; Andres, Sönke; Kumar, S Siva; Moradigaravand, Danesh; Coll, Francesc; Perdigão, João; Portugal, Isabel; +19 more... Schön, Thomas; Nair, Dina; Devi, KR Uma; Kohl, Thomas A; Beckert, Patrick; Clark, Taane G; Maphalala, Gugu; Khumalo, Derrick; Diel, Roland; Klaos, Kadri; Aung, Htin Lin; Cook, Gregory M; Parkhill, Julian; Peacock, Sharon J; Swaminathan, Soumya; Viveiros, Miguel; Niemann, Stefan; Krause, Kurt L; Köser, Claudio U; (2017) Role of Alanine Racemase Mutations in Mycobacterium tuberculosis d-Cycloserine Resistance. Antimicrobial agents and chemotherapy, 61 (12). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.01575-17

Ojal, John; Goldblatt, David; Tigoi, Caroline; Scott, J Anthony G; (2017) Effect of Maternally Derived Anti-protein and Anticapsular IgG Antibodies on the Rate of Acquisition of Nasopharyngeal Carriage of Pneumococcus in Newborns. Clinical infectious diseases, 66 (1). pp. 121-130. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix742

Okell, Lucy C; Griffin, Jamie T; Roper, Cally; (2017) Mapping sulphadoxine-pyrimethamine-resistant Plasmodium falciparum malaria in infected humans and in parasite populations in Africa. Scientific reports, 7 (1). 7389-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-06708-9

Osarfo, J; Tagbor, H; Cairns, M; Alifrangis, M; Magnussen, P; (2017) Dihydroartemisinin-piperaquine versus artesunate-amodiaquine for treatment of malaria infection in pregnancy in Ghana: an open-label, randomized, non-inferiority trial. Tropical medicine & international health. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12905

Oshota, Olusegun; Conway, Max; Fookes, Maria; Schreiber, Fernanda; Chaudhuri, Roy R; Yu, Lu; Morgan, Fiona JE; Clare, Simon; Choudhary, Jyoti; Thomson, Nicholas R; +4 more... Lio, Pietro; Maskell, Duncan J; Mastroeni, Pietro; Grant, Andrew J; (2017) Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice. PloS one, 12 (8). e0181365-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0181365

Park, Daniel E; Baggett, Henry C; Howie, Stephen RC; Shi, Qiyuan; Watson, Nora L; Brooks, W Abdullah; Deloria Knoll, Maria; Hammitt, Laura L; Kotloff, Karen L; Levine, Orin S; +28 more... Madhi, Shabir A; Murdoch, David R; O'Brien, Katherine L; Scott, J Anthony G; Thea, Donald M; Ahmed, Dilruba; Antonio, Martin; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Fu, Wei; Gitahi, Caroline W; Olutunde, Emmanuel; Higdon, Melissa M; Hossain, Lokman; Karron, Ruth A; Maiga, Abdoul Aziz; Maloney, Susan A; Moore, David P; Morpeth, Susan C; Mwaba, John; Mwenechanya, Musaku; Prosperi, Christine; Sylla, Mamadou; Thamthitiwat, Somsak; Zeger, Scott L; Feikin, Daniel R; PERCH Study Group; (2017) Colonization Density of the Upper Respiratory Tract as a Predictor of Pneumonia-Haemophilus influenzae, Moraxella catarrhalis, Staphylococcus aureus, and Pneumocystis jirovecii. Clinical infectious diseases, 64 (suppl_). S328-S336. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix104

Peltier, Johann; Shaw, Helen A; Wren, Brendan W; Fairweather, Neil F; (2017) Disparate subcellular location of putative sortase substrates in Clostridium difficile. Scientific reports, 7 (1). 9204-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-08322-1

Pickering, Harry; Teng, Andy; Faal, Nkoyo; Joof, Hassan; Makalo, Pateh; Cassama, Eunice; Nabicassa, Meno; Last, Anna R; Burr, Sarah E; Rowland-Jones, Sarah L; +7 more... Thomson, Nicholas R; Roberts, Chrissy H; Mabey, David CW; Bailey, Robin L; Hayward, Richard D; de la Maza, Luis M; Holland, Martin J; (2017) Genome-wide profiling of humoral immunity and pathogen genes under selection identifies immune evasion tactics of Chlamydia trachomatis during ocular infection. Scientific reports, 7 (1). 9634-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-09193-2

Queenan, Kevin; Chandler, Clare; Goodman, Catherine; (2017) Meeting report: Metrics and methods for assessing antibiotic use at the granular level in humans and livestock in LMICs. Working Paper. London School of Hygiene & Tropical Medicine, London, UK. https://researchonline.lshtm.ac.uk/id/eprint/4650709 (Unpublished)

Queenan, Kevin; Chandler, Clare; Goodman, Catherine; (2017) A review of methods and metrics for studying human and livestock antibiotic use at the granular level. A pre-read for roundtable discussion in London. Working Paper. London School of Hygiene and Tropical Medicine, London, UK. https://researchonline.lshtm.ac.uk/id/eprint/4650710 (Unpublished)

Ramírez-Vargas, Gabriel; Quesada-Gómez, Carlos; Acuña-Amador, Luis; López-Ureña, Diana; Murillo, Tatiana; Del Mar Gamboa-Coronado, María; Chaves-Olarte, Esteban; Thomson, Nicholas; Rodríguez-Cavallini, Evelyn; Rodríguez, César; (2017) A Clostridium difficile Lineage Endemic to Costa Rican Hospitals Is Multidrug Resistant by Acquisition of Chromosomal Mutations and Novel Mobile Genetic Elements. Antimicrobial agents and chemotherapy, 61 (4). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.02054-16

Raven, Kathy E; Gouliouris, Theodore; Parkhill, Julian; Peacock, Sharon J; (2017) Genome-Based Analysis of Enterococcus faecium Bacteremia Associated with Recurrent and Mixed-Strain Infection. Journal of clinical microbiology, 56 (3). ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01520-17

Recker, Mario; Laabei, Maisem; Toleman, Michelle S; Reuter, Sandra; Saunderson, Rebecca B; Blane, Beth; Török, M Estee; Ouadi, Khadija; Stevens, Emily; Yokoyama, Maho; +7 more... Steventon, Joseph; Thompson, Luke; Milne, Gregory; Bayliss, Sion; Bacon, Leann; Peacock, Sharon J; Massey, Ruth C; (2017) Clonal differences in Staphylococcus aureus bacteraemia-associated mortality. Nature microbiology, 2 (10). pp. 1381-1388. ISSN 2058-5276 DOI: https://doi.org/10.1038/s41564-017-0001-x

Requena-Méndez, Ana; Bussion, Sheila; Aldasoro, Edelweiss; Jackson, Yves; Angheben, Andrea; Moore, David; Pinazo, Maria-Jesús; Gascón, Joaquim; Muñoz, Jose; Sicuri, Elisa; (2017) Cost-effectiveness of Chagas disease screening in Latin American migrants at primary health-care centres in Europe: a Markov model analysis. The Lancet Global health, 5 (4). e439-e447. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(17)30073-6

Roca, A; Bojang, A; Camara, B; Oluwalana, C; Lette, K; West, P; D'Alessandro, U; Bottomley, C; (2017) Maternal colonization with Staphylococcus aureus and Group B streptococcus is associated with colonization in newborns. Clinical microbiology and infection, 23 (12). pp. 974-979. ISSN 1198-743X DOI: https://doi.org/10.1016/j.cmi.2017.04.020

Runcharoen, Chakkaphan; Raven, Kathy E; Reuter, Sandra; Kallonen, Teemu; Paksanont, Suporn; Thammachote, Jeeranan; Anun, Suthatip; Blane, Beth; Parkhill, Julian; Peacock, Sharon J; +1 more... Chantratita, Narisara; (2017) Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand. Genome medicine, 9 (1). 81-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-017-0471-8

Schallig, Henk Dfh; Tinto, Halidou; Sawa, Patrick; Kaur, Harparkash; Duparc, Stephan; Ishengoma, Deus S; Magnussen, Pascal; Alifrangis, Michael; Sutherland, Colin J; (2017) Randomised controlled trial of two sequential artemisinin-based combination therapy regimens to treat uncomplicated falciparum malaria in African children: a protocol to investigate safety, efficacy and adherence. BMJ global health, 2 (3). e000371-. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2017-000371

Seale, Anna C; Gordon, N Claire; Islam, Jasmin; Peacock, Sharon J; Scott, J Anthony G; (2017) AMR Surveillance in low and middle-income settings - A roadmap for participation in the Global Antimicrobial Surveillance System (GLASS). Wellcome open research, 2. 92-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.12527.1

Seale, Anna C; Hutchison, Coll; Fernandes, Silke; Stoesser, Nicole; Kelly, Helen; Lowe, Brett; Turner, Paul; Hanson, Kara; Chandler, Clare IR; Goodman, Catherine; +2 more... Stabler, Richard A; Scott, J Anthony G; (2017) Supporting surveillance capacity for antimicrobial resistance: Laboratory capacity strengthening for drug resistant infections in low and middle income countries. Wellcome open research, 2. 91-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.12523.1

Sengstake, Sarah; Bergval, Indra L; Schuitema, Anja R; de Beer, Jessica L; Phelan, Jody; de Zwaan, Rina; Clark, Taane G; van Soolingen, Dick; Anthony, Richard M; (2017) Pyrazinamide resistance-conferring mutations in pncA and the transmission of multidrug resistant TB in Georgia. BMC infectious diseases, 17 (1). 491-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2594-3

Shankar, Nivedita; Chow, Angela Li Ping; Oon, Jolene; Hsu, Li Yang; Ang, Brenda; Pang, Junxiong; De Sessions, Paola Florez; Periaswamy, Balamurugan; Tambyah, Paul A; Teo, Desmond B; +1 more... Tam, Clarence C; (2017) The epidemiology and transmission of methicillin-resistant Staphylococcus aureus in the community in Singapore: study protocol for a longitudinal household study. BMC infectious diseases, 17 (1). 678-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2793-y

Sheen, Patricia; Requena, David; Gushiken, Eduardo; Gilman, Robert H; Antiparra, Ricardo; Lucero, Bryan; Lizárraga, Pilar; Cieza, Basilio; Roncal, Elisa; Grandjean, Louis; +5 more... Pain, Arnab; McNerney, Ruth; Clark, Taane G; Moore, David; Zimic, Mirko; (2017) A multiple genome analysis of Mycobacterium tuberculosis reveals specific novel genes and mutations associated with pyrazinamide resistance. BMC genomics, 18 (1). 769-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4146-z

Smith, CM; Lessells, R; Grant, AD; Herbst, K; Tanser, F; (2017) Spatial clustering of drug-resistant tuberculosis in Hlabisa subdistrict, KwaZulu-Natal, 2011-2015. The international journal of tuberculosis and lung disease, 22 (3). pp. 287-293. ISSN 1027-3719 DOI: https://doi.org/10.5588/ijtld.17.0457

Sutherland, Colin J; (2017) Reply to van der Pluijm et al., "Antimalarial Resistance Unlikely To Explain U.K. Artemether-Lumefantrine Failures". Antimicrobial agents and chemotherapy, 61 (7). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.00815-17 Full text not available from this repository.

Sutherland, Colin J; Lansdell, Paul; Sanders, Mandy; Muwanguzi, Julian; van Schalkwyk, Donelly A; Kaur, Harparkash; Nolder, Debbie; Tucker, Julie; Bennett, Hayley M; Otto, Thomas D; +5 more... Berriman, Matthew; Patel, Trupti A; Lynn, Roderick; Gkrania-Klotsas, Effrossyni; Chiodini, Peter L; (2017) pfk13-Independent Treatment Failure in Four Imported Cases of Plasmodium falciparum Malaria Treated with Artemether-Lumefantrine in the United Kingdom. Antimicrobial agents and chemotherapy, 61 (3). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.02382-16

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