Wymant, C; Blanquart, F; Golubchik, T; Gall, A; Bakker, M; Bezemer, D; Croucher, NJ; Hall, M; Hillebregt, M; Ong, SH; +23 more... Ratmann, O; Albert, J; Bannert, N; Fellay, J; Fransen, K; Gourlay, A; Grabowski, MK; Gunsenheimer-Bartmeyer, B; Günthard, HF; Kivelä, P; Kouyos, R; Laeyendecker, O; Liitsola, K; Meyer, L; Porter, K; Ristola, M; van Sighem, A; Berkhout, B; Cornelissen, M; Kellam, P; Reiss, P; Fraser, C; BEEHIVE Collaboration; (2018) Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver. Virus evolution, 4 (1). vey007. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vey007

Agoti, CN; Munywoki, PK; Phan, MVT; Otieno, JR; Kamau, E; Bett, A; Kombe, I; Githinji, G; Medley, GF; Cane, PA; +3 more... Kellam, P; Cotten, M; Nokes, DJ; (2017) Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis. Virus evolution, 3 (1). vex006. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vex006

Agoti, CN; Munywoki, PK; Phan, MVT; Otieno, JR; Kamau, E; Bett, A; Kombe, I; Githinji, G; Medley, GF; Cane, PA; +3 more... Kellam, P; Cotton, M; Nokes, DJ; (2017) A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis. Virus evolution, 3 (Suppl). ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vew036.025

Dennis, AM; Hue, S; Learner, E; Sebastian, J; Miller, WC; Eron, JJ; (2017) Rising prevalence of non-B HIV-1 subtypes in North Carolina and evidence for local onward transmission. Virus evolution, 3 (1). vex013. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vex013

Otieno, JR; Agoti, CN; Gitahi, CW; Bett, A; Ngama, M; Medley, GF; Cane, PA; Nokes, DJ; (2017) A49 Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya. Virus evolution, 3 (Suppl). ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vew036.048

Lu, L; Van Dung, N; Bryant, JE; Carrique-Mas, J; Van Cuong, N; Anh, PH; Rabaa, MA; Baker, S; Simmonds, P; Woolhouse, ME; (2016) Evolution and phylogeographic dissemination of endemic porcine picornaviruses in Vietnam. Virus evolution, 2 (1). vew001. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vew001

Phan, MVT; Anh, PH; Cuong, NV; Munnink, BBO; van der Hoek, L; My, PT; Tri, TN; Bryant, JE; Baker, S; Thwaites, G; +5 more... Woolhouse, M; Kellam, P; Rabaa, MA; Cotten, M; VIZIONS Consortium; (2016) Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection. Virus evolution, 2 (2). vew027. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/vew027