Browse by Publication
Up a level |
Number of items: 7.
2019
Campbell, Finlay;
Cori, Anne;
Ferguson, Neil;
Jombart, Thibaut;
(2019)
Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data.
PLOS COMPUTATIONAL BIOLOGY, 15 (3).
ISSN 1553-734X
DOI: https://doi.org/10.1371/journal.pcbi.1006930
Kalimeri, Kyriaki;
Delfino, Matteo;
Cattuto, Ciro;
Perrotta, Daniela;
Colizza, Vittoria;
Guerrisi, Caroline;
Turbelin, Clement;
Duggan, Jim;
Edmunds, John;
Obi, Chinelo;
+8 more...
Pebody, Richard;
Franco, Ana O;
Moreno, Yamir;
Meloni, Sandro;
Koppeschaar, Carl;
Kjelso, Charlotte;
Mexia, Ricardo;
Paolotti, Daniela;
(2019)
Unsupervised extraction of epidemic syndromes from participatory influenza surveillance self-reported symptoms.
PLOS COMPUTATIONAL BIOLOGY, 15 (4).
ISSN 1553-734X
DOI: https://doi.org/10.1371/journal.pcbi.1006173
2018
Cori, Anne;
Nouvellet, Pierre;
Garske, Tini;
Bourhy, Herve;
Nakoune, Emmanuel;
Jombart, Thibaut;
(2018)
A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies.
PLOS COMPUTATIONAL BIOLOGY, 14 (12).
ISSN 1553-7358
DOI: https://doi.org/10.1371/journal.pcbi.1006554
2017
Sumner, Tom;
Orton, Richard J;
Green, Darren M;
Kao, Rowland R;
Gubbins, Simon;
(2017)
Quantifying the roles of host movement and vector dispersal in the transmission of vector-borne diseases of livestock.
PLOS COMPUTATIONAL BIOLOGY, 13 (4).
ISSN 1553-734X
DOI: https://doi.org/10.1371/journal.pcbi.1005470
Wick, Ryan R;
Judd, Louise M;
Gorrie, Claire L;
Holt, Kathryn E;
(2017)
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
PLOS COMPUTATIONAL BIOLOGY, 13 (6).
ISSN 1553-734X
DOI: https://doi.org/10.1371/journal.pcbi.1005595
2014
Jombart, Thibaut;
Cori, Anne;
Didelot, Xavier;
Cauchemez, Simon;
Fraser, Christophe;
Ferguson, Neil;
(2014)
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data.
PLOS COMPUTATIONAL BIOLOGY, 10 (1).
ISSN 1553-734X
DOI: https://doi.org/10.1371/journal.pcbi.1003457
Lindgreen, Stinus;
Umu, Sinan Ugur;
Lai, Alicia Sook-Wei;
Eldai, Hisham;
Liu, Wenting;
McGimpsey, Stephanie;
Wheeler, Nicole E;
Biggs, Patrick J;
Thomson, Nick R;
Barquist, Lars;
+2 more...
Poole, Anthony M;
Gardner, Paul P;
(2014)
Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling.
PLOS COMPUTATIONAL BIOLOGY, 10 (10).
ISSN 1553-7358
DOI: https://doi.org/10.1371/journal.pcbi.1003907