Baker, Kate S; Dallman, Timothy J; Thomson, Nicholas R; Jenkins, Claire; (2018) An outbreak of a rare Shiga-toxin-producing Escherichia coli serotype (O117:H7) among men who have sex with men. MICROBIAL GENOMICS, 4 (7). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000181

Bentley, Stephen; Thomson, Nicholas; (2015) 70th Anniversary Collection for the Microbiology Society: Microbial Genomics. MICROBIAL GENOMICS, 1 (6). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000040

Dallman, Tim; Inns, Thomas; Jombart, Thibaut; Ashton, Philip; Loman, Nicolas; Chatt, Carol; Messelhaeusser, Ute; Rabsch, Wolfgang; Simon, Sandra; Nikisins, Sergejs; +9 more... Bernard, Helen; le Hello, Simon; da-Silva, Nathalie Jourdan; Kornschober, Christian; Mossong, Joel; Hawkey, Peter; De Pinna, Elizabeth; Grant, Kathie; Cleary, Paul; (2016) Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network. MICROBIAL GENOMICS, 2 (8). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000070

Duchene, Sebastian; Holt, Kathryn E; Weill, Francois-Xavier; Le Hello, Simon; Hawkey, Jane; Edwards, David J; Fourment, Mathieu; Holmes, Edward C; (2016) Genome-scale rates of evolutionary change in bacteria. MICROBIAL GENOMICS, 2 (11). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000094

Hawkey, Jane; Ascher, David B; Judd, Louise M; Wick, Ryan R; Kostoulias, Xenia; Cleland, Heather; Spelman, Denis W; Padiglione, Alex; Peleg, Anton Y; Holt, Kathryn E; (2018) Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection. MICROBIAL GENOMICS, 4 (3). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000165

Heinz, Eva; Brindle, Richard; Morgan-McCalla, Andrina; Peters, Keisha; Thomson, Nicholas R; (2019) Caribbean multi-centre study of Klebsiella pneumoniae: whole-genome sequencing, antimicrobial resistance and virulence factors. MICROBIAL GENOMICS, 5 (5). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000266

Holt, Kathryn; Kenyon, Johanna J; Hamidian, Mohammad; Schultz, Mark B; Pickard, Derek J; Dougan, Gordon; Hall, Ruth; (2016) Five decades of genome evolution in the globally distributed, extensively antibiotic-resistant Acinetobacter baumannii global clone 1. MICROBIAL GENOMICS, 2 (2). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000052

Iguchi, Atsushi; von Mentzer, Astrid; Kikuchi, Taisei; Thomson, Nicholas R; (2017) An untypeable enterotoxigenic Escherichia coli represents one of the dominant types causing human disease. MICROBIAL GENOMICS, 3 (9). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000121

Ingle, Danielle J; Valcanis, Mary; Kuzevski, Alex; Tauschek, Marija; Inouye, Michael; Stinear, Tim; Levine, Myron M; Robins-Browne, Roy M; Holt, Kathryn E; (2016) In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages. MICROBIAL GENOMICS, 2 (7). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000064

Lam, Margaret MC; Wick, Ryan R; Wyres, Kelly L; Gorrie, Claire L; Judd, Louise M; Jenney, Adam WJ; Brisse, Sylvain; Holt, Kathryn E; (2018) Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations. MICROBIAL GENOMICS, 4 (9). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000196

Page, Andrew J; Wailan, Alexander; Shao, Yan; Judge, Kim; Dougan, Gordon; Klemm, Elizabeth J; Thomson, Nicholas R; Keane, Jacqueline A; (2018) PlasmidTron: assembling the cause of phenotypes and genotypes from NGS data. MICROBIAL GENOMICS, 4 (3). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000164

Raven, Kathy; Blane, Beth; Churcher, Carol; Parkhill, Julian; Peacock, Sharon J; (2018) Are commercial providers a viable option for clinical bacterial sequencing? MICROBIAL GENOMICS, 4 (4). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000173

Rew, Vanessa; Mook, Piers; Trienekens, Suzan; Baker, Kate S; Dallman, Timothy J; Jenkins, Claire; Crook, Paul D; Thomson, Nicholas R; (2018) Whole-genome sequencing revealed concurrent outbreaks of shigellosis in the English Orthodox Jewish Community caused by multiple importations of Shigella sonnei from Israel. MICROBIAL GENOMICS, 4 (3). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000170 Item availability may be restricted.

Schultz, Mark B; Duy, Pham Thanh; Nhu, Tran Do Hoan; Wick, Ryan R; Ingle, Danielle J; Hawkey, Jane; Edwards, David J; Kenyon, Johanna J; Nguyen, Phu Huong Lan; Campbell, James I; +6 more... Thwaites, Guy; Nguyen, Thi Khanh Nhu; Hall, Ruth M; Fournier-Level, Alexandre; Baker, Stephen; Holt, Kathryn E; (2016) Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward. MICROBIAL GENOMICS, 2 (3). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000050

Wick, Ryan R; Judd, Louise M; Gorrie, Claire L; Holt, Kathryn E; (2017) Completing bacterial genome assemblies with multiplex MinION sequencing. MICROBIAL GENOMICS, 3 (10). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000132