Year Authors/Creators Item Type Full Text

Article

The Murray collection of pre-antibiotic era Enterobacteriacae: a unique research resource. (2015) Baker, Kate S; Burnett, Edward; McGregor, Hannah; Deheer-Graham, Ana; Boinett, Christine; Langridge, Gemma C; Wailan, Alexander M; Cain, Amy K; Thomson, Nicholas R; Russell, Julie E; Parkhill, Julian

Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network. (2016) Brodrick, Hayley J; Raven, Kathy E; Harrison, Ewan M; Blane, Beth; Reuter, Sandra; Török, M Estée; Parkhill, Julian; Peacock, Sharon J

Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom. (2017) Brodrick, Hayley J; Raven, Kathy E; Kallonen, Teemu; Jamrozy, Dorota; Blane, Beth; Brown, Nicholas M; Martin, Veronique; Török, M Estée; Parkhill, Julian; Peacock, Sharon J

Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences. (2015) Coll, Francesc; McNerney, Ruth; Preston, Mark D; Guerra-Assunção, José Afonso; Warry, Andrew; Hill-Cawthorne, Grant; Mallard, Kim; Nair, Mridul; Miranda, Anabela; Alves, Adriana; Perdigão, João; Viveiros, Miguel; Portugal, Isabel; Hasan, Zahra; Hasan, Rumina; Glynn, Judith R; Martin, Nigel; Pain, Arnab; Clark, Taane G

Genome-wide association studies are coming for human infectious diseases. (2009) Davila, Sonia; Hibberd, Martin L

The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health. (2025) Dyson, Zoe A; Cerdeira, Louise; Sharma, Vandana; Carey, Megan E; Holt, Kathryn E; Aanensen, David M; Abbas, Ali H; Fayad, Antoine Abou; Afolayan, Ayorinde O; Ahmed, Niyaz; Ahmed, Irshad; Amir, Afreenish; Andleeb, Saadia; Argimón, Silvia; Aseffa, Abraham; Ashton, Philip M; Aworh, Mabel K; Bavdekar, Ashish R; Chattaway, Marie A; Chew, Ka Lip; Crump, John A; Darton, Thomas C; Diaz, Paula L; Dolecek, Christiane; Feasey, Nicholas A; Greenhill, Andrew R; Gupta, Madhu; Hatta, Mochammad; Hendriksen, Rene S; Heyderman, Robert S; Ikhimiukor, Odion O; Ikram, Aamer; Ingle, Danielle J; Kapil, Arti; Keane, Jacqueline A; Keddy, Karen H; Kingsley, Robert A; Levine, Myron M; MacLennan, Calman A; Maes, Mailis; Mahindroo, Jaspreet; Mashe, Tapfumanei; Morita, Masatomo; Mylona, Elli; Nagaraj, Geetha; Nair, Satheesh; Naseri, Take K; Njamkepo, Elisabeth; Octavia, Sophie; Okeke, Iruka N; Owusu, Michael; de la Gandara, Maria Pardos; Pollard, Andrew J; Rahman, Sadia IA; Rahman, Saikt; Rasko, David A; Redwan, Elrashdy M; Rokney, Assaf; Rupali, Priscilla; Rutanga, Jean Pierre; Shakya, Jivan; Saha, Senjuti; Sikorski, Michael J; Smith, Anthony M; Tagg, Kaitlin A; Taneja, Neelam; Tamrakar, Dipesh; Turner, Paul; Ussher, James E; Van Puyvelde, Sandra; Vandelannoote, Koen; Weill, François-Xavier; Wong, Vanessa K; Wright, Jackie

GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning. (2021) Gröschel, Matthias I; Owens, Martin; Freschi, Luca; Vargas, Roger; Marin, Maximilian G; Phelan, Jody; Iqbal, Zamin; Dixit, Avika; Farhat, Maha R

Transmission of methicillin-resistant Staphylococcus aureus in long-term care facilities and their related healthcare networks. (2016) Harrison, Ewan M; Ludden, Catherine; Brodrick, Hayley J; Blane, Beth; Brennan, Gráinne; Morris, Dearbháile; Coll, Francesc; Reuter, Sandra; Brown, Nicholas M; Holmes, Mark A; O'Connell, Brian; Parkhill, Julian; Török, M Estee; Cormican, Martin; Peacock, Sharon J

ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. (2022) Hawkey, Jane; Wyres, Kelly L; Judd, Louise M; Harshegyi, Taylor; Blakeway, Luke; Wick, Ryan R; Jenney, Adam WJ; Holt, Kathryn E

Microbial genomics: an increasingly revealing interface in human health and disease. (2013) Hibberd, Martin L

Global gene expression profiling identifies new therapeutic targets in acute Kawasaki disease. (2014) Hoang, Long Truong; Shimizu, Chisato; Ling, Ling; Naim, Ahmad Nazri Mohamed; Khor, Chiea Chuen; Tremoulet, Adriana H; Wright, Victoria; Levin, Michael; Hibberd, Martin L; Burns, Jane C

Shared pathways to infectious disease susceptibility? (2010) Khor, Chiea C; Hibberd, Martin L

The impact of genomics on precision public health: beyond the pandemic. (2021) Khoury, Muin J; Holt, Kathryn E

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae. (2018) Lam, Margaret MC; Wyres, Kelly L; Judd, Louise M; Wick, Ryan R; Jenney, Adam; Brisse, Sylvain; Holt, Kathryn E

Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity. (2018) Last, AR; Pickering, H; Roberts, CH; Coll, F; Phelan, J; Burr, SE; Cassama, E; Nabicassa, M; Seth-Smith, HMB; Hadfield, J; Cutcliffe, LT; Clarke, IN; Mabey, DCW; Bailey, RL; Clark, TG; Thomson, NR; Holland, MJ

Moving pathogen genomics out of the lab and into the clinic: what will it take? (2015) Luheshi, Leila M; Raza, Sobia; Peacock, Sharon J

Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients. (2017) Moradigaravand, Danesh; Gouliouris, Theodore; Blane, Beth; Naydenova, Plamena; Ludden, Catherine; Crawley, Charles; Brown, Nicholas M; Török, M Estée; Parkhill, Julian; Peacock, Sharon J

Aggregation tests identify new gene associations with breast cancer in populations with diverse ancestry. (2023) Mueller, Stefanie H; Lai, Alvina G; Valkovskaya, Maria; Michailidou, Kyriaki; Bolla, Manjeet K; Wang, Qin; Dennis, Joe; Lush, Michael; Abu-Ful, Zomoruda; Ahearn, Thomas U; Andrulis, Irene L; Anton-Culver, Hoda; Antonenkova, Natalia N; Arndt, Volker; Aronson, Kristan J; Augustinsson, Annelie; Baert, Thais; Freeman, Laura E Beane; Beckmann, Matthias W; Behrens, Sabine; Benitez, Javier; Bermisheva, Marina; Blomqvist, Carl; Bogdanova, Natalia V; Bojesen, Stig E; Bonanni, Bernardo; Brenner, Hermann; Brucker, Sara Y; Buys, Saundra S; Castelao, Jose E; Chan, Tsun L; Chang-Claude, Jenny; Chanock, Stephen J; Choi, Ji-Yeob; Chung, Wendy K; NBCS Collaborators; Colonna, Sarah V; CTS Consortium; Cornelissen, Sten; Couch, Fergus J; Czene, Kamila; Daly, Mary B; Devilee, Peter; Dörk, Thilo; Dossus, Laure; Dwek, Miriam; Eccles, Diana M; Ekici, Arif B; Eliassen, A Heather; Engel, Christoph; Evans, D Gareth; Fasching, Peter A; Fletcher, Olivia; Flyger, Henrik; Gago-Dominguez, Manuela; Gao, Yu-Tang; García-Closas, Montserrat; García-Sáenz, José A; Genkinger, Jeanine; Gentry-Maharaj, Aleksandra; Grassmann, Felix; Guénel, Pascal; Gündert, Melanie; Haeberle, Lothar; Hahnen, Eric; Haiman, Christopher A; Håkansson, Niclas; Hall, Per; Harkness, Elaine F; Harrington, Patricia A; Hartikainen, Jaana M; Hartman, Mikael; Hein, Alexander; Ho, Weang-Kee; Hooning, Maartje J; Hoppe, Reiner; Hopper, John L; Houlston, Richard S; Howell, Anthony; Hunter, David J; Huo, Dezheng; ABCTB Investigators; Ito, Hidemi; Iwasaki, Motoki; Jakubowska, Anna; Janni, Wolfgang; John, Esther M; Jones, Michael E; Jung, Audrey; Kaaks, Rudolf; Kang, Daehee; Khusnutdinova, Elza K; Kim, Sung-Won; Kitahara, Cari M; Koutros, Stella; Kraft, Peter; Kristensen, Vessela N; Kubelka-Sabit, Katerina; Kurian, Allison W; Kwong, Ava; Lacey, James V; Lambrechts, Diether; Le Marchand, Loic; Li, Jingmei; Linet, Martha; Lo, Wing-Yee; Long, Jirong; Lophatananon, Artitaya; Mannermaa, Arto; Manoochehri, Mehdi; Margolin, Sara; Matsuo, Keitaro; Mavroudis, Dimitrios; Menon, Usha; Muir, Kenneth; Murphy, Rachel A; Nevanlinna, Heli; Newman, William G; Niederacher, Dieter; O'Brien, Katie M; Obi, Nadia; Offit, Kenneth; Olopade, Olufunmilayo I; Olshan, Andrew F; Olsson, Håkan; Park, Sue K; Patel, Alpa V; Patel, Achal; Perou, Charles M; Peto, Julian; Pharoah, Paul DP; Plaseska-Karanfilska, Dijana; Presneau, Nadege; Rack, Brigitte; Radice, Paolo; Ramachandran, Dhanya; Rashid, Muhammad U; Rennert, Gad; Romero, Atocha; Ruddy, Kathryn J; Ruebner, Matthias; Saloustros, Emmanouil; Sandler, Dale P; Sawyer, Elinor J; Schmidt, Marjanka K; Schmutzler, Rita K; Schneider, Michael O; Scott, Christopher; Shah, Mitul; Sharma, Priyanka; Shen, Chen-Yang; Shu, Xiao-Ou; Simard, Jacques; Surowy, Harald; Tamimi, Rulla M; Tapper, William J; Taylor, Jack A; Teo, Soo Hwang; Teras, Lauren R; Toland, Amanda E; Tollenaar, Rob AEM; Torres, Diana; Torres-Mejía, Gabriela; Troester, Melissa A; Truong, Thérèse; Vachon, Celine M; Vijai, Joseph; Weinberg, Clarice R; Wendt, Camilla; Winqvist, Robert; Wolk, Alicja; Wu, Anna H; Yamaji, Taiki; Yang, Xiaohong R; Yu, Jyh-Cherng; Zheng, Wei; Ziogas, Argyrios; Ziv, Elad; Dunning, Alison M; Easton, Douglas F; Hemingway, Harry; Hamann, Ute; Kuchenbaecker, Karoline B

Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. (2019) Phelan, Jody E; O'Sullivan, Denise M; Machado, Diana; Ramos, Jorge; Oppong, Yaa EA; Campino, Susana; O'Grady, Justin; McNerney, Ruth; Hibberd, Martin L; Viveiros, Miguel; Huggett, Jim F; Clark, Taane G

Rapid profiling of Plasmodium parasites from genome sequences to assist malaria control. (2023) Phelan, Jody E; Turkiewicz, Anna; Manko, Emilia; Thorpe, Joseph; Vanheer, Leen N; van de Vegte-Bolmer, Marga; Ngoc, Nguyen Thi Hong; Binh, Nguyen Thi Huong; Thieu, Nguyen Quang; Gitaka, Jesse; Nolder, Debbie; Beshir, Khalid B; Dombrowski, Jamille G; Di Santi, Silvia Maria; Bousema, Teun; Sutherland, Colin J; Campino, Susana; Clark, Taane G

The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs. (2016) Phelan, Jody; O'Sullivan, Denise M; Machado, Diana; Ramos, Jorge; Whale, Alexandra S; O'Grady, Justin; Dheda, Keertan; Campino, Susana; McNerney, Ruth; Viveiros, Miguel; Huggett, Jim F; Clark, Taane G

Killer-cell Immunoglobulin-like Receptor gene linkage and copy number variation analysis by droplet digital PCR. (2014) Roberts, Chrissy H; Jiang, Wei; Jayaraman, Jyothi; Trowsdale, John; Holland, Martin J; Traherne, James A

Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae. (2017) Runcharoen, Chakkaphan; Moradigaravand, Danesh; Blane, Beth; Paksanont, Suporn; Thammachote, Jeeranan; Anun, Suthatip; Parkhill, Julian; Chantratita, Narisara; Peacock, Sharon J

Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand. (2017) Runcharoen, Chakkaphan; Raven, Kathy E; Reuter, Sandra; Kallonen, Teemu; Paksanont, Suporn; Thammachote, Jeeranan; Anun, Suthatip; Blane, Beth; Parkhill, Julian; Peacock, Sharon J; Chantratita, Narisara

DNA methylome-wide association study of genetic risk for depression implicates antigen processing and immune responses. (2022) Shen, Xueyi; Caramaschi, Doretta; Adams, Mark J; Walker, Rosie M; Min, Josine L; Kwong, Alex; Hemani, Gibran; Genetics of DNA Methylation Consortium; Barbu, Miruna C; Whalley, Heather C; Harris, Sarah E; Deary, Ian J; Morris, Stewart W; Cox, Simon R; Relton, Caroline L; Marioni, Riccardo E; Evans, Kathryn L; McIntosh, Andrew M

A new method for detecting mixed Mycobacterium tuberculosis infection and reconstructing constituent strains provides insights into transmission. (2025) Sobkowiak, Benjamin; Cudahy, Patrick; Chitwood, Melanie H; Clark, Taane G; Colijn, Caroline; Grandjean, Louis; Walter, Katharine S; Crudu, Valeriu; Cohen, Ted

Large-scale genomic analysis of global Klebsiella pneumoniae plasmids reveals multiple simultaneous clusters of carbapenem-resistant hypervirulent strains. (2023) Spadar, Anton; Perdigão, João; Campino, Susana; Clark, Taane G

Exploiting genomics to mitigate the public health impact of antimicrobial resistance. (2022) Waddington, Claire; Carey, Megan E; Boinett, Christine J; Higginson, Ellen; Veeraraghavan, Balaji; Baker, Stephen

An integrated in silico immuno-genetic analytical platform provides insights into COVID-19 serological and vaccine targets. (2021) Ward, Daniel; Higgins, Matthew; Phelan, Jody E; Hibberd, Martin L; Campino, Susana; Clark, Taane G

Genetics and Genomics of Infectious Diseases: advancing our understanding of host/pathogens and their interactions. (2009) Yang, Ninghan; Hibberd, Martin L

The conjunctival microbiome in health and trachomatous disease: a case control study. (2014) Zhou, Yanjiao; Holland, Martin J; Makalo, Pateh; Joof, Hassan; Roberts, Chrissy H; Mabey, David Cw; Bailey, Robin L; Burton, Matthew J; Weinstock, George M; Burr, Sarah E