Year Authors/Creators Item Type Full Text

Article

Automated download and clean-up of family-specific databases for kmer-based virus identification. (2021) Allesøe, Rosa L; Lemvigh, Camilla K; Phan, My VT; Clausen, Philip TLC; Florensa, Alfred F; Koopmans, Marion PG; Lund, Ole; Cotten, Matthew

SnoopCGH: software for visualizing comparative genomic hybridization data. (2009) Almagro-Garcia, Jacob; Manske, Magnus; Carret, Celine; Campino, Susana; Auburn, Sarah; Macinnis, Bronwyn L; Maslen, Gareth; Pain, Arnab; Newbold, Christopher I; Kwiatkowski, Dominic P; Clark, Taane G

estMOI: estimating multiplicity of infection using parasite deep sequencing data. (2014) Assefa, Samuel A; Preston, Mark D; Campino, Susana; Ocholla, Harold; Sutherland, Colin J; Clark, Taane G

A mixture model-based strategy for selecting sets of genes in multiclass response microarray experiments. (2004) Broët, Philippe; Lewin, Alex; Richardson, Sylvia; Dalmasso, Cyril; Magdelenat, Henri

PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. (2016) Chen, Feng; Wang, Shuang; Jiang, Xiaoqian; Ding, Sijie; Lu, Yao; Kim, Jihoon; Sahinalp, S Cenk; Shimizu, Chisato; Burns, Jane C; Wright, Victoria J; Png, Eileen; Hibberd, Martin L; Lloyd, David D; Yang, Hai; Telenti, Amalio; Bloss, Cinnamon S; Fox, Dov; Lauter, Kristin; Ohno-Machado, Lucila

A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals. (2010) Clark, Taane G; Campino, Susana G; Anastasi, Elisa; Auburn, Sarah; Teo, Yik Y; Small, Kerrin; Rockett, Kirk A; Kwiatkowski, Dominic P; Holmes, Christopher C

SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences. (2012) Coll, Francesc; Mallard, Kim; Preston, Mark D; Bentley, Stephen; Parkhill, Julian; McNerney, Ruth; Martin, Nigel; Clark, Taane G

Two novel pathway analysis methods based on a hierarchical model. (2013) Evangelou, Marina; Dudbridge, Frank; Wernisch, Lorenz

The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistance. (2009) Gifford, Robert J; Liu, Tommy F; Rhee, Soo-Yon; Kiuchi, Mark; Hue, Stephane; Pillay, Deenan; Shafer, Robert W

PrimedRPA: primer design for recombinase polymerase amplification assays. (2018) Higgins, Matthew; Ravenhall, Matt; Ward, Daniel; Phelan, Jody; Ibrahim, Amy; Forrest, Matthew S; Clark, Taane G; Campino, Susana

MT-HESS: an efficient Bayesian approach for simultaneous association detection in OMICS datasets, with application to eQTL mapping in multiple tissues. (2015) Lewin, Alex; Saadi, Habib; Peters, James E; Moreno-Moral, Aida; Lee, James C; Smith, Kenneth GC; Petretto, Enrico; Bottolo, Leonardo; Richardson, Sylvia

SVAMP: sequence variation analysis, maps and phylogeny. (2014) Naeem, Raeece; Hidayah, Lailatul; Preston, Mark D; Clark, Taane G; Pain, Arnab

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data. (2012) Preston, Mark D; Manske, Magnus; Horner, Neil; Assefa, Samuel; Campino, Susana; Auburn, Sarah; Zongo, Issaka; Ouedraogo, Jean-Bosco; Nosten, Francois; Anderson, Tim; Clark, Taane G

Bayesian survival analysis in genetic association studies. (2008) Tachmazidou, Ioanna; Andrew, Toby; Verzilli, Claudio J; Johnson, Michael R; De Iorio, Maria

A genotype calling algorithm for the Illumina BeadArray platform. (2007) Teo, Yik Y; Inouye, Michael; Small, Kerrin S; Gwilliam, Rhian; Deloukas, Panagiotis; Kwiatkowski, Dominic P; Clark, Taane G

SNPLINK: multipoint linkage analysis of densely distributed SNP data incorporating automated linkage disequilibrium removal. (2005) Webb, Emily L; Sellick, Gabrielle S; Houlston, Richard S