Nimmo, Camus; Shaw, Liam P; Doyle, Ronan; Williams, Rachel; Brien, Kayleen; Burgess, Carrie; Breuer, Judith; Balloux, Francois; Pym, Alexander S; (2019) Correction to: Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture. BMC genomics, 20 (1). p. 433. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-019-5841-8

Oppong, Yaa EA; Phelan, Jody; Perdigão, João; Machado, Diana; Miranda, Anabela; Portugal, Isabel; Viveiros, Miguel; Clark, Taane G; Hibberd, Martin L; (2019) Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance. BMC genomics, 20 (1). p. 252. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-019-5615-3

Borghini, Lisa; Hibberd, Martin; Davila, Sonia; (2018) Changes in H3K27ac following lipopolysaccharide stimulation of nasopharyngeal epithelial cells. BMC genomics, 19 (1). p. 969. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-018-5295-4

Sobkowiak, B; Glynn, JR; Houben, RMGJ; Mallard, K; Phelan, JE; Guerra-Assunção, JA; Banda, L; Mzembe, T; Viveiros, M; McNerney, R; +3 more... Parkhill, J; Crampin, AC; Clark, TG; (2018) Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. BMC genomics, 19 (1). p. 613. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-018-4988-z

Diallo, K; Gamougam, K; Daugla, DM; Harrison, OB; Bray, JE; Caugant, DA; Lucidarme, J; Trotter, CL; Hassan-King, M; Stuart, JM; +3 more... Manigart, O; Greenwood, BM; Maiden, MCJ; (2017) Hierarchical genomic analysis of carried and invasive serogroup A Neisseria meningitidis during the 2011 epidemic in Chad. BMC genomics, 18 (1). p. 398. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-3789-0

Dung, TTN; Duy, PT; Sessions, OM; Sangumathi, UK; Phat, VV; Tam, PTT; To, NTN; Phuc, TM; Hong Chau, TT; Chau, NNM; +4 more... Minh, NN; Thwaites, GE; Rabaa, MA; Baker, S; (2017) A universal genome sequencing method for rotavirus A from human fecal samples which identifies segment reassortment and multi-genotype mixed infection. BMC genomics, 18 (1). p. 324. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-3714-6

Fookes, MC; Hadfield, J; Harris, S; Parmar, S; Unemo, M; Jensen, JS; Thomson, NR; (2017) Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure. BMC genomics, 18 (1). p. 993. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4399-6

Jamrozy, D; Coll, F; Mather, AE; Harris, SR; Harrison, EM; MacGowan, A; Karas, A; Elston, T; Estée Török, M; Parkhill, J; +1 more... Peacock, SJ; (2017) Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events. BMC genomics, 18 (1). p. 684. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4065-z

Sheen, P; Requena, D; Gushiken, E; Gilman, RH; Antiparra, R; Lucero, B; Lizárraga, P; Cieza, B; Roncal, E; Grandjean, L; +5 more... Pain, A; McNerney, R; Clark, TG; Moore, D; Zimic, M; (2017) A multiple genome analysis of Mycobacterium tuberculosis reveals specific novel genes and mutations associated with pyrazinamide resistance. BMC genomics, 18 (1). p. 769. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4146-z

Zhu, YO; Aw, PPK; de Sessions, PF; Hong, S; See, LX; Hong, LZ; Wilm, A; Li, CH; Hue, S; Lim, SG; +3 more... Nagarajan, N; Burkholder, WF; Hibberd, M; (2017) Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history. BMC genomics, 18 (1). p. 829. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4217-1

Mullin, BH; Walsh, JP; Zheng, HF; Brown, SJ; Surdulescu, GL; Curtis, C; Breen, G; Dudbridge, F; Richards, JB; Spector, TD; +1 more... Wilson, SG; (2016) Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density. BMC genomics, 17 (1). p. 136. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-016-2481-0

Phelan, JE; Coll, F; Bergval, I; Anthony, RM; Warren, R; Sampson, SL; Gey van Pittius, NC; Glynn, JR; Crampin, AC; Alves, A; +20 more... Bessa, TB; Campino, S; Dheda, K; Grandjean, L; Hasan, R; Hasan, Z; Miranda, A; Moore, D; Panaiotov, S; Perdigao, J; Portugal, I; Sheen, P; de Oliveira Sousa, E; Streicher, EM; van Helden, PD; Viveiros, M; Hibberd, ML; Pain, A; McNerney, R; Clark, TG; (2016) Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages. BMC genomics, 17 (1). p. 151. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-016-2467-y

Duffy, CW; Assefa, SA; Abugri, J; Amoako, N; Owusu-Agyei, S; Anyorigiya, T; MacInnis, B; Kwiatkowski, DP; Conway, DJ; Awandare, GA; (2015) Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity. BMC genomics, 16. p. 527. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-015-1746-3

Perdigão, J; Silva, H; Machado, D; Macedo, R; Maltez, F; Silva, C; Jordao, L; Couto, I; Mallard, K; Coll, F; +6 more... Hill-Cawthorne, GA; McNerney, R; Pain, A; Clark, TG; Viveiros, M; Portugal, I; (2014) Unraveling Mycobacterium tuberculosis genomic diversity and evolution in Lisbon, Portugal, a highly drug resistant setting. BMC genomics, 15. p. 991. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-15-991

Kimaro Mlacha, SZ; Peret, TC; Umar, N; Romero-Steiner, S; Dunning Hotopp, JC; Ishmael, N; Grinblat-Huse, V; Riley, DR; Erdman, DD; Carlone, GM; +3 more... Sampson, J; Scott, JA; Tettelin, H; (2013) Transcriptional adaptation of pneumococci and human pharyngeal cells in the presence of a virus infection. BMC genomics, 14. p. 378. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-14-378

Kumari, V; Iyer, LR; Roy, R; Bhargava, V; Panda, S; Paul, J; Verweij, JJ; Clark, CG; Bhattacharya, A; Bhattacharya, S; (2013) Genomic distribution of SINEs in Entamoeba histolytica strains: implication for genotyping. BMC genomics, 14 (1). p. 432. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-14-432

Mlacha, SZ; Romero-Steiner, S; Hotopp, JC; Umar, N; Ishmael, N; Riley, DR; Farooq, U; Creasy, TH; Tallon, LJ; Liu, X; +6 more... Goldsmith, CS; Sampson, J; Carlone, GM; Hollingshead, SK; Scott, JA; Tettelin, H; (2013) Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells. BMC genomics, 14. p. 383. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-14-383

Sepúlveda, N; Campino, SG; Assefa, SA; Sutherland, CJ; Pain5, A; Clark, TG; (2013) A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data. BMC genomics, 14 (1). p. 128. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-14-128

Donkor, ES; Stabler, RA; Hinds, J; Adegbola, RA; Antonio, M; Wren, BW; (2012) Comparative phylogenomics of Streptococcus pneumoniae isolated from invasive disease and nasopharyngeal carriage from West Africans. BMC genomics, 13. p. 569. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-13-569

Echeverry, MC; Bot, C; Obado, SO; Taylor, MC; Kelly, JM; (2012) Centromere-associated repeat arrays on Trypanosoma brucei chromosomes are much more extensive than predicted. BMC genomics, 13. p. 29. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-13-29

Franzén, O; Talavera-López, C; Ochaya, S; Butler, CE; Messenger, LA; Lewis, MD; Llewellyn, MS; Marinkelle, CJ; Tyler, KM; Miles, MA; +1 more... Andersson, B; (2012) Comparative genomic analysis of human infective Trypanosoma cruzi lineages with the bat-restricted subspecies T. cruzi marinkellei. BMC genomics, 13. p. 531. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-13-531

Zheng, Y; Wang, JL; Liu, C; Wang, CP; Walker, T; Wang, YF; (2011) Differentially expressed profiles in the larval testes of Wolbachia infected and uninfected Drosophila. BMC genomics, 12. p. 595. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-12-595

Huntley, DM; Pandis, I; Butcher, SA; Ackers, JP; (2010) Bioinformatic analysis of Entamoeba histolytica SINE1 elements. BMC genomics, 11 (1). p. 321. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-11-321

Snyder, LA; Loman, NJ; Linton, JD; Langdon, RR; Weinstock, GM; Wren, BW; Pallen, MJ; (2010) Simple sequence repeats in Helicobacter canadensis and their role in phase variable expression and C-terminal sequence switching. BMC genomics, 11. p. 67. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-11-67

Cheeseman, IH; Gomez-Escobar, N; Carret, CK; Ivens, A; Stewart, LB; Tetteh, KK; Conway, DJ; (2009) Gene copy number variation throughout the Plasmodium falciparum genome. BMC genomics, 10. p. 353. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-10-353

Klasson, L; Kambris, Z; Cook, PE; Walker, T; Sinkins, SP; (2009) Horizontal gene transfer between Wolbachia and the mosquito Aedes aegypti. BMC genomics, 10. p. 33. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-10-33

Seth-Smith, HMB; Harris, SR; Persson, K; Marsh, P; Barron, A; Bignell, A; Bjartling, C; Clark, L; Cutcliffe, LT; Lambden, PR; +10 more... Lennard, N; Lockey, SJ; Quail, MA; Salim, O; Skilton, RJ; Wang, YB; Holland, MJ; Parkhill, J; Thomson, NR; Clarke, IN; (2009) Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain. BMC genomics, 10. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-10-239

Smargiasso, N; Gabelica, V; Damblon, C; Rosu, F; De Pauw, E; Teulade-Fichou, MP; Rowe, JA; Claessens, A; (2009) Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes. BMC genomics, 10. p. 362. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-10-362

Stubben, CJ; Duffield, ML; Cooper, IA; Ford, DC; Gans, JD; Karlyshev, AV; Lingard, B; Oyston, PCF; de Rochefort, A; Song, J; +3 more... Wren, BW; Titball, RW; Wolinsky, M; (2009) Steps toward broad-spectrum therapeutics: discovering virulence-associated genes present in diverse human pathogens. BMC genomics, 10. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-10-501

Horn, D; (2008) Codon usage suggests that translational selection has a major impact on protein expression in trypanosomatids. BMC genomics, 9. p. 2. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-9-2

Chelala, C; Hahn, SA; Whiteman, HJ; Barry, S; Hariharan, D; Radon, TP; Lemoine, NR; Crnogorac-Jurcevic, T; (2007) Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets. BMC genomics, 8. p. 439. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-8-439

Gundogdu, O; Bentley, SD; Holden, MT; Parkhill, J; Dorrell, N; Wren, BW; (2007) Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence. BMC genomics, 8. p. 162. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-8-162

Harland, DN; Dassa, E; Titball, RW; Brown, KA; Atkins, HS; (2007) ATP-binding cassette systems in Burkholderia pseudomallei and Burkholderia mallei. BMC genomics, 8. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-8-83

Stabler, R; Hinds, J; (2006) The majority of genes in the pathogenic Neisseria species are present in non-pathogenic Neisseria lactamica, including those designated as virulence genes: response. BMC genomics, 7. p. 129. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-7-129