Year Authors/Creators Item Type Full Text

Article

On the origin of Mycobacterium ulcerans, the causative agent of Buruli ulcer. (2012) Doig, Kenneth D; Holt, Kathryn E; Fyfe, Janet AM; Lavender, Caroline J; Eddyani, Miriam; Portaels, Françoise; Yeboah-Manu, Dorothy; Pluschke, Gerd; Seemann, Torsten; Stinear, Timothy P

Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis. (2015) Hjerde, Erik; Karlsen, Christian; Sørum, Henning; Parkhill, Julian; Willassen, Nils Peder; Thomson, Nicholas R

The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay. (2008) Hjerde, Erik; Lorentzen, Marit Sjo; Holden, Matthew Tg; Seeger, Kathy; Paulsen, Steinar; Bason, Nathalie; Churcher, Carol; Harris, David; Norbertczak, Halina; Quail, Michael A; Sanders, Suzanne; Thurston, Scott; Parkhill, Julian; Willassen, Nils Peder; Thomson, Nicholas R

Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi. (2009) Holt, Kathryn E; Thomson, Nicholas R; Wain, John; Langridge, Gemma C; Hasan, Rumina; Bhutta, Zulfiqar A; Quail, Michael A; Norbertczak, Halina; Walker, Danielle; Simmonds, Mark; White, Brian; Bason, Nathalie; Mungall, Karen; Dougan, Gordon; Parkhill, Julian

Short read sequence typing (SRST): multi-locus sequence types from short reads. (2012) Inouye, Michael; Conway, Thomas C; Zobel, Justin; Holt, Kathryn E

Genome-wide transcriptional analyses in Anopheles mosquitoes reveal an unexpected association between salivary gland gene expression and insecticide resistance. (2018) Isaacs, Alison T; Mawejje, Henry D; Tomlinson, Sean; Rigden, Daniel J; Donnelly, Martin J

Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement. (2009) Jackson, Andrew P; Thomas, Gavin H; Parkhill, Julian; Thomson, Nicholas R

Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia. (2020) Kamau, Everlyn; Oketch, John W; de Laurent, Zaydah R; Phan, My VT; Agoti, Charles N; Nokes, D James; Cotten, Matthew

Whole genome sequencing of Mycobacterium tuberculosis isolates and clinical outcomes of patients treated for multidrug-resistant tuberculosis in Tanzania. (2020) Katale, Bugwesa Z; Mbelele, Peter M; Lema, Nsiande A; Campino, Susana; Mshana, Stephen E; Rweyemamu, Mark M; Phelan, Jody E; Keyyu, Julius D; Majigo, Mtebe; Mbugi, Erasto V; Dockrell, Hazel M; Clark, Taane G; Matee, Mecky I; Mpagama, Stellah

European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures. (2017) Seth-Smith, HMB; Busó, Leonor Sánchez; Livingstone, M; Sait, M; Harris, SR; Aitchison, KD; Vretou, Evangelia; Siarkou, VI; Laroucau, K; Sachse, K; Longbottom, D; Thomson, NR

Schizont transcriptome variation among clinical isolates and laboratory-adapted clones of the malaria parasite Plasmodium falciparum. (2018) Tarr, Sarah J; Díaz-Ingelmo, Ofelia; Stewart, Lindsay B; Hocking, Suzanne E; Murray, Lee; Duffy, Craig W; Otto, Thomas D; Chappell, Lia; Rayner, Julian C; Awandare, Gordon A; Conway, David J

Evidence for a lineage of virulent bacteriophages that target Campylobacter. (2010) Timms, Andrew R; Cambray-Young, Joanna; Scott, Andrew E; Petty, Nicola K; Connerton, Phillippa L; Clarke, Louise; Seeger, Kathy; Quail, Mike; Cummings, Nicola; Maskell, Duncan J; Thomson, Nicholas R; Connerton, Ian F

RNA-seq analysis of the influence of anaerobiosis and FNR on Shigella flexneri. (2014) Vergara-Irigaray, Marta; Fookes, Maria C; Thomson, Nicholas R; Tang, Christoph M

GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure. (2020) Wan, Yu; Wick, Ryan R; Zobel, Justin; Ingle, Danielle J; Inouye, Michael; Holt, Kathryn E