Abaasa, Andrew; Mayanja, Yunia; Asiki, Gershim; Price, Matt A; Fast, Patricia E; Ruzagira, Eugene; Kaleebu, Pontiano; Todd, Jim; LSHTM, MRC/UVRI and LSHTM Uganda Research Unit, IAVI; (2021) Use of propensity score matching to create counterfactual group to assess potential HIV prevention interventions. Scientific reports, 11 (1). 7017-. DOI: https://doi.org/10.1038/s41598-021-86539-x

Allesøe, Rosa L; Lemvigh, Camilla K; Phan, My VT; Clausen, Philip TLC; Florensa, Alfred F; Koopmans, Marion PG; Lund, Ole; Cotten, Matthew; (2021) Automated download and clean-up of family-specific databases for kmer-based virus identification. Bioinformatics (Oxford, England), 37 (5). pp. 705-710. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/btaa857

Bannink Mbazzi, Femke; Nimusiima, Claire; Akellot, Daniella; Kawesa, Elizabeth; Abaasa, Andrew; Hodges, Sarah; Seeley, Janet; Vervoort, Tine; (2021) Use of Virtual Reality Distraction to Reduce Child Pain and Fear during Painful Medical Procedures in Children with Physical Disabilities in Uganda: A Feasibility Study. Pain Medicine, 23 (4). pp. 642-654. ISSN 1526-2375 DOI: https://doi.org/10.1093/pm/pnab206

Bugembe, Daniel Lule; Phan, My VT; Abias, Abe G; Ayei, James; Deng, Lul Lojok; Lako, Richard Lino Loro; Rumunu, John; Kaleebu, Pontiano; Wamala, Joseph Francis; Hm, Juma John; +3 more... Lodiongo, Dennis Kenyi; Bunga, Sudhir; Cotten, Matthew; (2021) SARS-CoV-2 Variants, South Sudan, January-March 2021. Emerging Infectious Diseases, 27 (12). pp. 3133-3136. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2712.211488

Bugembe, Daniel Lule; Phan, My VT; Ssewanyana, Isaac; Semanda, Patrick; Nansumba, Hellen; Dhaala, Beatrice; Nabadda, Susan; O'Toole, Áine Niamh; Rambaut, Andrew; Kaleebu, Pontiano; +1 more... Cotten, Matthew; (2021) Emergence and spread of a SARS-CoV-2 lineage A variant (A.23.1) with altered spike protein in Uganda. Nature microbiology, 6 (8). pp. 1094-1101. ISSN 2058-5276 DOI: https://doi.org/10.1038/s41564-021-00933-9

Cotten, Matthew; Lule Bugembe, Dan; Kaleebu, Pontiano; V T Phan, My; (2021) Alternate primers for whole-genome SARS-CoV-2 sequencing. Virus evolution, 7 (1). veab006-. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/veab006

Cotten, Matthew; Robertson, David L; Phan, My VT; (2021) Unique protein features of SARS-CoV-2 relative to other Sarbecoviruses. Virus evolution, 7 (2). veab067-. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/veab067

Kapaata, Anne; Balinda, Sheila N; Xu, Rui; Salazar, Maria G; Herard, Kimberly; Brooks, Kelsie; Laban, Kato; Hare, Jonathan; Dilernia, Dario; Kamali, Anatoli; +8 more... Ruzagira, Eugene; Mukasa, Freddie; Gilmour, Jill; Salazar-Gonzalez, Jesus F; Yue, Ling; Cotten, Matthew; Hunter, Eric; Kaleebu, Pontiano; (2021) HIV-1 Gag-Pol Sequences from Ugandan Early Infections Reveal Sequence Variants Associated with Elevated Replication Capacity. Viruses, 13 (2). p. 171. ISSN 1999-4915 DOI: https://doi.org/10.3390/v13020171

Kusemererwa, Sylvia; Abaasa, Andrew; Kabarambi, Anita; Onyango, Martin; Mugisha, Joseph Okello; (2021) Assessment of risk compensation following use of the dapivirine vaginal ring in southwestern Uganda. Sexually transmitted infections, 98 (1). pp. 32-37. ISSN 1368-4973 DOI: https://doi.org/10.1136/sextrans-2020-054718

Kyegombe, Nambusi; Buller, Ana Maria; Meiksin, Rebecca; Wamoyi, Joyce; Muhumuza, Richard; Heise, Lori; (2021) Adolescent girls' perceived readiness for sex in Central Uganda - liminal transitions and implications for sexual and reproductive health interventions. Culture, Health & Sexuality, 24 (3). pp. 391-405. ISSN 1369-1058 DOI: https://doi.org/10.1080/13691058.2020.1849802

Kyegombe, Nambusi; Pocock, Nicola S; Chan, Clara W; Blagbrough, Jonathan; Zimmerman, Cathy; (2021) Evaluations of Interventions with Child Domestic Workers: A Rapid Systematic Review. International journal of environmental research and public health, 18 (19). p. 10084. ISSN 1661-7827 DOI: https://doi.org/10.3390/ijerph181910084

Kyegombe, Nambusi; Stern, Erin; Buller, Ana Maria; (2021) "We saw that jealousy can also bring violence": A qualitative exploration of the intersections between jealousy, infidelity and intimate partner violence in Rwanda and Uganda. Social Science & Medicine, 292. 114593-. ISSN 0277-9536 DOI: https://doi.org/10.1016/j.socscimed.2021.114593

Kyegombe, Nambusi; Stoebenau, Kirsten; Chimbindi, Natsayi; Zuma, Thembelihle; Shahmanesh, Maryam; Seeley, Janet; Wamoyi, Joyce; (2021) Measuring transactional sex in different contexts: How do tools to measure this practice perform in rural South Africa? African Journal of AIDS Research, 20 (4). pp. 329-335. ISSN 1608-5906 DOI: https://doi.org/10.2989/16085906.2021.2012213

Lambisia, Arnold W; Phan, My VT; de Laurent, Zaydah R; Cotten, Matthew; Nokes, D James; Agoti, Charles N; (2021) Near-Complete Genome Sequences of Eight Human Astroviruses Recovered from Diarrheal Stool Samples of Hospitalized Children in Coastal Kenya in 2019. Microbiology resource announcements, 10 (15). e00162-e00121. ISSN 2576-098X DOI: https://doi.org/10.1128/MRA.00162-21

Lubega, Gloria; Mayanja, Billy; Lutaakome, Joseph; Abaasa, Andrew; Thomson, Rebecca; Lindan, Christina; (2021) Prevalence and factors associated with hypertension among people living with HIV/AIDS on antiretroviral therapy in Uganda. The Pan African medical journal, 38. 216-. ISSN 1937-8688 DOI: https://doi.org/10.11604/pamj.2021.38.216.28034

Lutalo, Tom; Nalumansi, Aminah; Olara, Denis; Kayiwa, John; Ogwang, Bernard; Odwilo, Emmanuel; Watera, Christine; Balinandi, Stephen; Kiconco, Jocelyn; Nakaseegu, Joweria; +10 more... Serwanga, Jennifer; Kikaire, Bernard; Ssemwanga, Deogratius; Abiko, Brendah; Nsereko, Christopher; Cotten, Matthew; Buule, Joshua; Lutwama, Julius; Downing, Robert; Kaleebu, Pontiano; (2021) Evaluation of the performance of 25 SARS-CoV-2 serological rapid diagnostic tests using a reference panel of plasma specimens at the Uganda Virus Research Institute. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 112. pp. 281-287. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2021.09.020

Nanvubya, Annet; Matovu, Francis; Abaasa, Andrew; Mayanja, Yunia; Nakaweesa, Teddy; Mpendo, Juliet; Kawoozo, Barbarah; Chinyenze, Kundai; Price, Matt A; Wanyenze, Rhoda; +1 more... Geertruyden, Jean Pierre Van; (2021) Abortion and its correlates among female fisherfolk along Lake Victoria in Uganda. Journal of Family Medicine and Primary Care, 10 (11). pp. 3968-3975. ISSN 2249-4863 DOI: https://doi.org/10.4103/jfmpc.jfmpc_771_21

Roach, Michael; Cantu, Adrian; Vieri, Melissa Krizia; Cotten, Matthew; Kellam, Paul; Phan, My; Hoek, Lia van der; Mandro, Michel; Tepage, Floribert; Mambandu, Germain; +5 more... Musinya, Gisele; Laudisoit, Anne; Colebunders, Robert; Edwards, Robert; Mokili, John L; (2021) No Evidence Known Viruses Play a Role in the Pathogenesis of Onchocerciasis-Associated Epilepsy. An Explorative Metagenomic Case-Control Study. Pathogens (Basel, Switzerland), 10 (7). p. 787. ISSN 2076-0817 DOI: https://doi.org/10.3390/pathogens10070787

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