Abaasa, Andrew; Asiki, Gershim; Obuku Ekii, Andrew; Wanyenze, Josephine; Pala, Pietro; J van Dam, Govert; Corstjens, Paul LAM; Hughes, Peter; Ding, Song; Pantaleo, Giuseppe; +3 more... Kaleebu, Pontiano; Elliott, Alison M; Kamali, Anatoli; (2018) Effect of high-intensity versus low-intensity praziquantel treatment on HIV disease progression in HIV and Schistosoma mansoni co-infected patients: a randomised controlled trial. Wellcome open research, 3. 81-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.14683.2

Abolins, Stephen; Lazarou, Luke; Weldon, Laura; Hughes, Louise; King, Elizabeth C; Drescher, Paul; Pocock, Michael JO; Hafalla, Julius CR; Riley, Eleanor M; Viney, Mark; (2018) The ecology of immune state in a wild mammal, Mus musculus domesticus. PLoS biology, 16 (4). e2003538-. ISSN 1544-9173 DOI: https://doi.org/10.1371/journal.pbio.2003538

Adjogatse, Eyram; Erskine, Peter; Wells, Stephen A; Kelly, John M; Wilden, Jonathan D; Chan, AW Edith; Selwood, David; Coker, Alun; Wood, Steve; Cooper, Jonathan B; (2018) Structure and function of L-threonine-3-dehydrogenase from the parasitic protozoan Trypanosoma brucei revealed by X-ray crystallography and geometric simulations. Acta crystallographica Section D, Structural biology, 74 (Pt 9). pp. 861-876. ISSN 2059-7983 DOI: https://doi.org/10.1107/S2059798318009208

Afrough, Babak; Zafar, Afia; Hasan, Rumina; Hewson, Roger; (2018) Complete Genome Sequence of Buffalopox Virus. Genome announcements, 6 (21). ISSN 2169-8287 DOI: https://doi.org/10.1128/genomea.00444-18

Aggerbeck, Henrik; Ruhwald, Morten; Hoff, Søren T; Borregaard, Bettine; Hellstrom, Elizabeth; Malahleha, Mookho; Siebert, Mirna; Gani, Mashra; Seopela, Vincent; Diacon, Andreas; +3 more... Lourens, Madeleine; Andersen, Peter; Dheda, Keertan; (2018) C-Tb skin test to diagnose Mycobacterium tuberculosis infection in children and HIV-infected adults: A phase 3 trial. PLOS ONE, 13 (9). e0204554-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0204554

Ahmad, Liyana; Mashbat, Bayarchimeg; Leung, Corwin; Brookes, Charlotte; Hamad, Samar; Krokowski, Sina; Shenoy, Avinash R; Lorenzo, Lazaro; Levin, Michael; O'Hare, Peter; +4 more... Zhang, Shen-Ying; Casanova, Jean-Laurent; Mostowy, Serge; Sancho-Shimizu, Vanessa; (2018) Human TANK-binding kinase 1 is required for early autophagy induction upon herpes simplex virus 1 infection. The Journal of allergy and clinical immunology, 143 (2). 765-769.e7. ISSN 0091-6749 DOI: https://doi.org/10.1016/j.jaci.2018.09.013

Ahmad, Liyana; Mostowy, Serge; Sancho-Shimizu, Vanessa; (2018) Autophagy-Virus Interplay: From Cell Biology to Human Disease. Frontiers in Cell and Developmental Biology, 6 (NOV). 155-. DOI: https://doi.org/10.3389/fcell.2018.00155

AlShaikhahmed, Kinda; Leonov, German; Sung, Po-Yu; Bingham, Richard J; Twarock, Reidun; Roy, Polly; (2018) Dynamic network approach for the modelling of genomic sub-complexes in multi-segmented viruses. Nucleic acids research, 46 (22). pp. 12087-12098. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gky881

Amambua-Ngwa, Alfred; Jeffries, David; Amato, Roberto; Worwui, Archibald; Karim, Mane; Ceesay, Sukai; Nyang, Haddy; Nwakanma, Davis; Okebe, Joseph; Kwiatkowski, Dominic; +2 more... Conway, David J; D'Alessandro, Umberto; (2018) Consistent signatures of selection from genomic analysis of pairs of temporal and spatial Plasmodium falciparum populations from The Gambia. Scientific reports, 8 (1). 9687-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-28017-5

Amarasinghe, Gaya K; Aréchiga Ceballos, Nidia G; Banyard, Ashley C; Basler, Christopher F; Bavari, Sina; Bennett, Andrew J; Blasdell, Kim R; Briese, Thomas; Bukreyev, Alexander; Caì, Yíngyún; +81 more... Calisher, Charles H; Campos Lawson, Cristine; Chandran, Kartik; Chapman, Colin A; Chiu, Charles Y; Choi, Kang-Seuk; Collins, Peter L; Dietzgen, Ralf G; Dolja, Valerian V; Dolnik, Olga; Domier, Leslie L; Dürrwald, Ralf; Dye, John M; Easton, Andrew J; Ebihara, Hideki; Echevarría, Juan E; Fooks, Anthony R; Formenty, Pierre BH; Fouchier, Ron AM; Freuling, Conrad M; Ghedin, Elodie; Goldberg, Tony L; Hewson, Roger; Horie, Masayuki; Hyndman, Timothy H; Jiāng, Dàohóng; Kityo, Robert; Kobinger, Gary P; Kondō, Hideki; Koonin, Eugene V; Krupovic, Mart; Kurath, Gael; Lamb, Robert A; Lee, Benhur; Leroy, Eric M; Maes, Piet; Maisner, Andrea; Marston, Denise A; Mor, Sunil Kumar; Müller, Thomas; Mühlberger, Elke; Ramírez, Víctor Manuel Neira; Netesov, Sergey V; Ng, Terry Fei Fan; Nowotny, Norbert; Palacios, Gustavo; Patterson, Jean L; Pawęska, Janusz T; Payne, Susan L; Prieto, Karla; Rima, Bertus K; Rota, Paul; Rubbenstroth, Dennis; Schwemmle, Martin; Siddell, Stuart; Smither, Sophie J; Song, Qisheng; Song, Timothy; Stenglein, Mark D; Stone, David M; Takada, Ayato; Tesh, Robert B; Thomazelli, Luciano Matsumiya; Tomonaga, Keizō; Tordo, Noël; Towner, Jonathan S; Vasilakis, Nikos; Vázquez-Morón, Sonia; Verdugo, Claudio; Volchkov, Viktor E; Wahl, Victoria; Walker, Peter J; Wang, David; Wang, Lin-Fa; Wellehan, James FX; Wiley, Michael R; Whitfield, Anna E; Wolf, Yuri I; Yè, Gōngyín; Zhāng, Yǒng-Zhèn; Kuhn, Jens H; (2018) Taxonomy of the order Mononegavirales: update 2018. Archives of virology, 163 (8). pp. 2283-2294. ISSN 0304-8608 DOI: https://doi.org/10.1007/s00705-018-3814-x

Ampah, Khamal K; Greaves, Jennifer; Shun-Shion, Amber S; Asnawi, Asral W; Lidster, Jessica A; Chamberlain, Luke H; Collins, Mark O; Peden, Andrew A; (2018) S-acylation regulates the trafficking and stability of the unconventional Q-SNARE STX19. Journal of cell science, 131 (20). jcs212498-jcs212498. ISSN 0021-9533 DOI: https://doi.org/10.1242/jcs.212498

Arinaitwe, Emmanuel; Dorsey, Grant; Nankabirwa, Joaniter I; Kigozi, Simon P; Katureebe, Agaba; Kakande, Elijah; Rek, John; Rosenthal, Philip J; Drakeley, Chris; Kamya, Moses R; +1 more... Staedke, Sarah G; (2018) Association Between Recent Overnight Travel and Risk of Malaria: A Prospective Cohort Study at 3 Sites in Uganda. Clinical infectious diseases, 68 (2). pp. 313-320. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy478

Ashwin, Helen; Seifert, Karin; Forrester, Sarah; Brown, Najmeeyah; MacDonald, Sandy; James, Sally; Lagos, Dimitris; Timmis, Jon; Mottram, Jeremy C; Croft, Simon L; +1 more... Kaye, Paul M; (2018) Tissue and host species-specific transcriptional changes in models of experimental visceral leishmaniasis. Wellcome open research, 3. 135-. DOI: https://doi.org/10.12688/wellcomeopenres.14867.2

Aspeling-Jones, Harvey; Conway, David J; (2018) An expanded global inventory of allelic variation in the most extremely polymorphic region of Plasmodium falciparum merozoite surface protein 1 provided by short read sequence data. Malaria journal, 17 (1). 345-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-018-2475-2

Atcheson, Erwan; Bauza, Karolis; Salman, Ahmed M; Alves, Eduardo; Blight, Joshua; Viveros-Sandoval, Martha Eva; Janse, Chris J; Khan, Shahid M; Hill, Adrian VS; Reyes-Sandoval, Arturo; (2018) Tailoring a Plasmodium vivax Vaccine To Enhance Efficacy through a Combination of a CSP Virus-Like Particle and TRAP Viral Vectors. Infection and Immunity, 86 (9). e00114-e00118. ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.00114-18

Auburn, Sarah; Benavente, Ernest D; Miotto, Olivo; Pearson, Richard D; Amato, Roberto; Grigg, Matthew J; Barber, Bridget E; William, Timothy; Handayuni, Irene; Marfurt, Jutta; +9 more... Trimarsanto, Hidayat; Noviyanti, Rintis; Sriprawat, Kanlaya; Nosten, Francois; Campino, Susana; Clark, Taane G; Anstey, Nicholas M; Kwiatkowski, Dominic P; Price, Ric N; (2018) Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics. Nature communications, 9 (1). 2585-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-04965-4

Baker, Kate S; Dallman, Timothy J; Field, Nigel; Childs, Tristan; Mitchell, Holly; Day, Martin; Weill, François-Xavier; Lefèvre, Sophie; Tourdjman, Mathieu; Hughes, Gwenda; +2 more... Jenkins, Claire; Thomson, Nicholas; (2018) Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance. Scientific reports, 8 (1). 7389-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-25764-3

Baker, Kate S; Dallman, Timothy J; Field, Nigel; Childs, Tristan; Mitchell, Holly; Day, Martin; Weill, François-Xavier; Lefèvre, Sophie; Tourdjman, Mathieu; Hughes, Gwenda; +2 more... Jenkins, Claire; Thomson, Nicholas; (2018) Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species. Nature communications, 9 (1). 1462-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-03949-8

Baker, Kate S; Dallman, Timothy J; Thomson, Nicholas R; Jenkins, Claire; (2018) An outbreak of a rare Shiga-toxin-producing Escherichia coli serotype (O117:H7) among men who have sex with men. MICROBIAL GENOMICS, 4 (7). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000181

Baker, Stephen; Thomson, Nicholas; Weill, François-Xavier; Holt, Kathryn E; (2018) Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens. Science, 360 (6390). pp. 733-738. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.aar3777

Bannister, Stephanie A; Kidd, Stephen P; Kirby, Elizabeth; Shah, Sonal; Thomas, Anvy; Vipond, Richard; Elmore, Michael J; Telfer Brunton, Andrew; Marsh, Peter; Green, Steve; +2 more... Silman, Nigel J; Kempsell, Karen E; (2018) Development and Assessment of a Diagnostic DNA Oligonucleotide Microarray for Detection and Typing of Meningitis-Associated Bacterial Species. High-throughput, 7 (4). p. 32. ISSN 2571-5135 DOI: https://doi.org/10.3390/ht7040032

Barry, Aissata; Behet, Marije C; Nébié, Issa; Lanke, Kjerstin; Grignard, Lynn; Ouedraogo, Alphonse; Soulama, Issiaka; Drakeley, Chris; Sauerwein, Robert; Bolscher, Judith M; +4 more... Dechering, Koen J; Bousema, Teun; Tiono, Alfred B; Gonçalves, Bronner P; (2018) Functional antibodies against Plasmodium falciparum sporozoites are associated with a longer time to qPCR-detected infection among schoolchildren in Burkina Faso. Wellcome Open Research, 3. p. 159. DOI: https://doi.org/10.12688/wellcomeopenres.14932.1

Barry, Aissata; Behet, Marije C; Nébié, Issa; Lanke, Kjerstin; Grignard, Lynn; Ouedraogo, Alphonse; Soulama, Issiaka; Drakeley, Chris; Sauerwein, Robert; Bolscher, Judith M; +4 more... Dechering, Koen J; Bousema, Teun; Tiono, Alfred B; Gonçalves, Bronner P; (2018) Functional antibodies against Plasmodium falciparum sporozoites are associated with a longer time to qPCR-detected infection among schoolchildren in Burkina Faso. Wellcome open research, 3. 159-. DOI: https://doi.org/10.12688/wellcomeopenres.14932.2

Bastiaens, Guido JH; Tiono, Alfred B; Okebe, Joseph; Pett, Helmi E; Coulibaly, Sam A; Gonçalves, Bronner P; Affara, Muna; Ouédraogo, Alphonse; Bougouma, Edith C; Sanou, Guillaume S; +8 more... Nébié, Issa; Bradley, John; Lanke, Kjerstin HW; Niemi, Mikko; Sirima, Sodiomon B; d'Alessandro, Umberto; Bousema, Teun; Drakeley, Chris; (2018) Safety of single low-dose primaquine in glucose-6-phosphate dehydrogenase deficient falciparum-infected African males: Two open-label, randomized, safety trials. PloS one, 13 (1). e0190272-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0190272

Behar, Adi; Baker, Kate Susan; Bassal, Ravit; Ezernitchi, Analia; Valinsky, Lea; Thomson, Nicholas R; Cohen, Daniel; (2018) Microevolution and Patterns of Transmission of Shigella sonnei within Cyclic Outbreaks Shigellosis, Israel. EMERGING INFECTIOUS DISEASES, 24 (7). pp. 1335-1339. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2407.171313

Benavente, Ernest Diez; Oresegun, Damilola R; de Sessions, Paola Florez; Walker, Eloise M; Roper, Cally; Dombrowski, Jamille G; de Souza, Rodrigo M; Marinho, Claudio RF; Sutherland, Colin J; Hibberd, Martin L; +4 more... Mohareb, Fady; Baker, David A; Clark, Taane G; Campino, Susana; (2018) Global genetic diversity of var2csa in Plasmodium falciparum with implications for malaria in pregnancy and vaccine development. Scientific reports, 8 (1). 15429-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-33767-3

Beshir, Khalid B; Diallo, Nouhoum; Sutherland, Colin J; (2018) Identifying Recrudescent Plasmodium falciparum in Treated Malaria Patients by Real-time PCR and High Resolution Melt Analysis of Genetic Diversity. Scientific reports, 8 (1). 10097-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-28179-2

Beynon, Fenella; Theron, Grant; Respeito, Durval; Mambuque, Edson; Saavedra, Belen; Bulo, Helder; Sanz, Sergi; Dheda, Keertan; Garcia-Basteiro, Alberto L; (2018) Correlation of Xpert MTB/RIF with measures to assess Mycobacterium tuberculosis bacillary burden in high HIV burden areas of Southern Africa. Scientific reports, 8 (1). 5201-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-23066-2

Bhattacharyya, Tapan; Messenger, Louisa A; Bern, Caryn; Mertens, Pascal; Gilleman, Quentin; Zeippen, Nicolas; Bremer Hinckel, Bruno C; Murphy, Niamh; Gilman, Robert H; Miles, Michael A; +1 more... Chagas Working Group in Bolivia and Peru; (2018) Severity of Chagasic Cardiomyopathy Is Associated With Response to a Novel Rapid Diagnostic Test for Trypanosoma cruzi TcII/V/VI. Clinical infectious diseases, 67 (4). pp. 519-524. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy121

Bistrović, Andrea; Krstulović, Luka; Stolić, Ivana; Drenjančević, Domagoj; Talapko, Jasminka; Taylor, Martin C; Kelly, John M; Bajić, Miroslav; Raić-Malić, Silvana; (2018) Synthesis, anti-bacterial and anti-protozoal activities of amidinobenzimidazole derivatives and their interactions with DNA and RNA. Journal of enzyme inhibition and medicinal chemistry, 33 (1). pp. 1323-1334. ISSN 1475-6366 DOI: https://doi.org/10.1080/14756366.2018.1484733

Black, Sally; Bradley, Carina; Lai, Florence Y; Shenoy, Savitha; Bandi, Srini; Allen, David J; Tang, Julian W; (2018) Comparing the Clinical Severity of Disease Caused by Enteroviruses and Human Parechoviruses in Neonates and Infants. The Pediatric infectious disease journal, 38 (2). e36-e38. ISSN 0891-3668 DOI: https://doi.org/10.1097/INF.0000000000002145

Boonyalai, Nonlawat; Collins, Christine R; Hackett, Fiona; Withers-Martinez, Chrislaine; Blackman, Michael J; (2018) Essentiality of Plasmodium falciparum plasmepsin V. PloS one, 13 (12). e0207621-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0207621

Boonyalai, Nonlawat; Collins, Christine R; Hackett, Fiona; Withers-Martinez, Chrislaine; Blackman, Michael J; (2018) Function and essentiality of <i>Plasmodium falciparum</i> plasmepsin V. BioRxiv. DOI: https://doi.org/10.1101/404798

Borghini, Lisa; Hibberd, Martin; Davila, Sonia; (2018) Changes in H3K27ac following lipopolysaccharide stimulation of nasopharyngeal epithelial cells. BMC genomics, 19 (1). 969-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-018-5295-4

Bossé, Janine T; Li, Yanwen; Fernandez Crespo, Roberto; Lacouture, Sonia; Gottschalk, Marcelo; Sárközi, Rita; Fodor, László; Casas Amoribieta, Maria; Angen, Øystein; Nedbalcova, Katerina; +7 more... Holden, Matthew TG; Maskell, Duncan J; Tucker, Alexander W; Wren, Brendan W; Rycroft, Andrew N; Langford, Paul R; BRaDP1T consortium; (2018) Comparative sequence analysis of the capsular polysaccharide loci of Actinobacillus pleuropneumoniae serovars 1-18, and development of two multiplex PCRs for comprehensive capsule typing. Veterinary microbiology, 220. pp. 83-89. ISSN 0378-1135 DOI: https://doi.org/10.1016/j.vetmic.2018.05.011

Bossé, Janine T; Li, Yanwen; Sárközi, Rita; Fodor, László; Lacouture, Sonia; Gottschalk, Marcelo; Casas Amoribieta, Maria; Angen, Øystein; Nedbalcova, Katerina; Holden, Matthew TG; +6 more... Maskell, Duncan J; Tucker, Alexander W; Wren, Brendan W; Rycroft, Andrew N; Langford, Paul R; BRaDP1T consortium; (2018) Proposal of serovars 17 and 18 of Actinobacillus pleuropneumoniae based on serological and genotypic analysis. Veterinary microbiology, 217. pp. 1-6. ISSN 0378-1135 DOI: https://doi.org/10.1016/j.vetmic.2018.02.019

Bradley, John; Stone, Will; Da, Dari F; Morlais, Isabelle; Dicko, Alassane; Cohuet, Anna; Guelbeogo, Wamdaogo M; Mahamar, Almahamoudou; Nsango, Sandrine; Soumaré, Harouna M; +13 more... Diawara, Halimatou; Lanke, Kjerstin; Graumans, Wouter; Siebelink-Stoter, Rianne; van de Vegte-Bolmer, Marga; Chen, Ingrid; Tiono, Alfred; Gonçalves, Bronner Pamplona; Gosling, Roland; Sauerwein, Robert W; Drakeley, Chris; Churcher, Thomas S; Bousema, Teun; (2018) Predicting the likelihood and intensity of mosquito infection from sex specific Plasmodium falciparum gametocyte density. eLife, 7. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.34463

Britto, Carl D; Dyson, Zoe A; Duchene, Sebastian; Carter, Michael J; Gurung, Meeru; Kelly, Dominic F; Murdoch, David R; Ansari, Imran; Thorson, Stephen; Shrestha, Shrijana; +4 more... Adhikari, Neelam; Dougan, Gordon; Holt, Kathryn E; Pollard, Andrew J; (2018) Laboratory and molecular surveillance of paediatric typhoidal Salmonella in Nepal: Antimicrobial resistance and implications for vaccine policy. PLOS NEGLECTED TROPICAL DISEASES, 12 (4). e0006408-. ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0006408

Brugman, VA; Kristan, M; Gibbins, MP; Angrisano, F; Sala, KA; Dessens, JT; Blagborough, AM; Walker, T; (2018) Detection of malaria sporozoites expelled during mosquito sugar feeding. Scientific reports, 8 (1). 7545-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-26010-6

Brynildsrud, Ola B; Pepperell, Caitlin S; Suffys, Philip; Grandjean, Louis; Monteserin, Johana; Debech, Nadia; Bohlin, Jon; Alfsnes, Kristian; Pettersson, John O-H; Kirkeleite, Ingerid; +20 more... Fandinho, Fatima; da Silva, Marcia Aparecida; Perdigao, Joao; Portugal, Isabel; Viveiros, Miguel; Clark, Taane; Caws, Maxine; Dunstan, Sarah; Thai, Phan Vuong Khac; Lopez, Beatriz; Ritacco, Viviana; Kitchen, Andrew; Brown, Tyler S; van Soolingen, Dick; O'Neill, Mary B; Holt, Kathryn E; Feil, Edward J; Mathema, Barun; Balloux, Francois; Eldholm, Vegard; (2018) Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation. SCIENCE ADVANCES, 4 (10). eaat5869-. ISSN 2375-2548 DOI: https://doi.org/10.1126/sciadv.aat5869

Butkeviciute, Egle; Jones, Christine E; Smith, Steven G; (2018) Heterologous effects of infant BCG vaccination: potential mechanisms of immunity. Future microbiology, 13 (10). pp. 1193-1208. ISSN 1746-0913 DOI: https://doi.org/10.2217/fmb-2018-0026

Byrne, Isabel; Judge, Christy; Downie, J Roger; (2018) The behaviour of recently hatched Tobago glass frog tadpoles. Herpetological Bulletin, 144. pp. 1-4. ISSN 1473-0928 https://www.thebhs.org/publications/the-herpetolog...

Byrne, Isabel; Loughrey, Ciara; McLelland, Jade; Downie, Roger J; (2018) Turtle activity monitoring within North-East Tobago. Testudo, 8 (5). http://www.britishcheloniagroup.org.uk/sites/defau...

Cain, Amy K; Boinett, Christine J; Barquist, Lars; Dordel, Janina; Fookes, Maria; Mayho, Matthew; Ellington, Matthew J; Goulding, David; Pickard, Derek; Wick, Ryan R; +3 more... Holt, Kathryn E; Parkhill, Julian; Thomson, Nicholas R; (2018) Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin. Scientific reports, 8 (1). 9868-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-28199-y

Campino, Susana; Marin-Menendez, Alejandro; Kemp, Alison; Cross, Nadia; Drought, Laura; Otto, Thomas D; Benavente, Ernest Diez; Ravenhall, Matt; Schwach, Frank; Girling, Gareth; +8 more... Manske, Magnus; Theron, Michel; Gould, Kelda; Drury, Eleanor; Clark, Taane G; Kwiatkowski, Dominic P; Pance, Alena; Rayner, Julian C; (2018) A forward genetic screen reveals a primary role for Plasmodium falciparum Reticulocyte Binding Protein Homologue 2a and 2b in determining alternative erythrocyte invasion pathways. PLoS pathogens, 14 (11). e1007436-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1007436

Campos, Monica C; Dombrowski, Jamille G; Phelan, Jody; Marinho, Claudio RF; Hibberd, Martin; Clark, Taane G; Campino, Susana; (2018) Zika might not be acting alone: Using an ecological study approach to investigate potential co-acting risk factors for an unusual pattern of microcephaly in Brazil. PloS one, 13 (8). e0201452-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0201452

Carroll, Paul; Muwanguzi-Karugaba, Julian; Parish, Tanya; (2018) Codon-optimized DsRed fluorescent protein for use in Mycobacterium tuberculosis. BMC research notes, 11 (1). 685-. ISSN 1756-0500 DOI: https://doi.org/10.1186/s13104-018-3798-3

Cheaveau, James; Nguyen, Hong; Chow, Barbara; Marasinghe, Dewdunee; Mohon, Abu Naser; Yuan, Hong; Viana, Gisele; van Schalkwyk, Donelly; Church, Deirdre; Chan, Wilson; +1 more... Pillai, Dylan R; (2018) Clinical Validation of a Commercial LAMP Test for Ruling out Malaria in Returning Travelers: A Prospective Diagnostic Trial. OPEN FORUM INFECTIOUS DISEASES, 5 (11). ofy260-. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofy260

Chegou, Novel N; Sutherland, Jayne S; Namuganga, Anna-Ritah; Corstjens, Paul Lam; Geluk, Annemieke; Gebremichael, Gebremedhin; Mendy, Joseph; Malherbe, Stephanus; Stanley, Kim; van der Spuy, Gian D; +25 more... Kriel, Magdalena; Loxton, Andre G; Kriel, Belinda; Simukonda, Felanji; Bekele, Yonas; Sheehama, Jacob A; Nelongo, Josefina; van der Vyver, Marieta; Gebrexabher, Atsbeha; Hailu, Habteyes; Esterhuyse, Maria M; Rosenkrands, Ida; Aagard, Claus; Kidd, Martin; Kassa, Desta; Mihret, Adane; Howe, Rawleigh; Cliff, Jacqueline M; Crampin, Amelia C; Mayanja-Kizza, Harriet; Kaufmann, Stefan HE; Dockrell, Hazel M; Ottenhoff, Tom HM; Walzl, Gerhard; AE-TBC consortium; (2018) Africa-wide evaluation of host biomarkers in QuantiFERON supernatants for the diagnosis of pulmonary tuberculosis. Scientific reports, 8 (1). 2675-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-20855-7

Cobelens, Frank; Nagelkerke, Nico; Fletcher, Helen; (2018) The convergent epidemiology of tuberculosis and human cytomegalovirus infection. F1000Research, 7. p. 280. DOI: https://doi.org/10.12688/f1000research.14184.2

Cobelens, Frank; Nagelkerke, Nico; Fletcher, Helen; (2018) The convergent epidemiology of tuberculosis and human cytomegalovirus infection. F1000Research, 7. 280-. ISSN 2046-1402 DOI: https://doi.org/10.12688/f1000research.14184.2

Coll, Francesc; Phelan, Jody; Hill-Cawthorne, Grant A; Nair, Mridul B; Mallard, Kim; Ali, Shahjahan; Abdallah, Abdallah M; Alghamdi, Saad; Alsomali, Mona; Ahmed, Abdallah O; +41 more... Portelli, Stephanie; Oppong, Yaa; Alves, Adriana; Bessa, Theolis Barbosa; Campino, Susana; Caws, Maxine; Chatterjee, Anirvan; Crampin, Amelia C; Dheda, Keertan; Furnham, Nicholas; Glynn, Judith R; Grandjean, Louis; Ha, Dang Minh; Hasan, Rumina; Hasan, Zahra; Hibberd, Martin L; Joloba, Moses; Jones-López, Edward C; Matsumoto, Tomoshige; Miranda, Anabela; Moore, David J; Mocillo, Nora; Panaiotov, Stefan; Parkhill, Julian; Penha, Carlos; Perdigão, João; Portugal, Isabel; Rchiad, Zineb; Robledo, Jaime; Sheen, Patricia; Shesha, Nashwa Talaat; Sirgel, Frik A; Sola, Christophe; Sousa, Erivelton Oliveira; Streicher, Elizabeth M; Van Helden, Paul; Viveiros, Miguel; Warren, Robert M; McNerney, Ruth; Pain, Arnab; Clark, Taane G; (2018) Author Correction: Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics, 50 (5). 764-. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-018-0074-3 Full text not available from this repository.

Coll, Francesc; Phelan, Jody; Hill-Cawthorne, Grant A; Nair, Mridul B; Mallard, Kim; Ali, Shahjahan; Abdallah, Abdallah M; Alghamdi, Saad; Alsomali, Mona; Ahmed, Abdallah O; +41 more... Portelli, Stephanie; Oppong, Yaa; Alves, Adriana; Bessa, Theolis Barbosa; Campino, Susana; Caws, Maxine; Chatterjee, Anirvan; Crampin, Amelia C; Dheda, Keertan; Furnham, Nicholas; Glynn, Judith R; Grandjean, Louis; Minh Ha, Dang; Hasan, Rumina; Hasan, Zahra; Hibberd, Martin L; Joloba, Moses; Jones-López, Edward C; Matsumoto, Tomoshige; Miranda, Anabela; Moore, David J; Mocillo, Nora; Panaiotov, Stefan; Parkhill, Julian; Penha, Carlos; Perdigão, João; Portugal, Isabel; Rchiad, Zineb; Robledo, Jaime; Sheen, Patricia; Shesha, Nashwa Talaat; Sirgel, Frik A; Sola, Christophe; Oliveira Sousa, Erivelton; Streicher, Elizabeth M; Helden, Paul Van; Viveiros, Miguel; Warren, Robert M; McNerney, Ruth; Pain, Arnab; Clark, Taane G; (2018) Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics, 50 (2). pp. 307-316. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-017-0029-0

Cook, Jackie; Owaga, Chrispin; Marube, Elizabeth; Baidjoe, Amrish; Stresman, Gillian; Migiro, Robin; Cox, Jon; Drakeley, Chris; Stevenson, Jennifer C; (2018) Risk factors for Plasmodium falciparum infection in the Kenyan Highlands: a cohort study. Transactions of The Royal Society of Tropical Medicine and Hygiene, 113 (3). pp. 152-159. ISSN 0035-9203 DOI: https://doi.org/10.1093/trstmh/try122

Cook, Sarah; Malyutina, Sofia; Kudryavtsev, Alexander V; Averina, Maria; Bobrova, Natalia; Boytsov, Sergey; Brage, Soren; Clark, Taane G; Diez Benavente, Ernest; Eggen, Anne Elise; +26 more... Hopstock, Laila A; Hughes, Alun; Johansen, Heidi; Kholmatova, Kamila; Kichigina, Anastasiya; Kontsevaya, Anna; Kornev, Michael; Leong, Darryl; Magnus, Per; Mathiesen, Ellisiv; McKee, Martin; Morgan, Katy; Nilssen, Odd; Plakhov, Ilya; Quint, Jennifer K; Rapala, Alicja; Ryabikov, Andrey; Saburova, Lyudmila; Schirmer, Henrik; Shapkina, Marina; Shiekh, Suhail; Shkolnikov, Vladimir M; Stylidis, Michael; Voevoda, Michael; Westgate, Kate; Leon, David A; (2018) Know Your Heart: Rationale, design and conduct of a cross-sectional study of cardiovascular structure, function and risk factors in 4500 men and women aged 35-69 years from two Russian cities, 2015-18. Wellcome Open Research, 3. 67-. DOI: https://doi.org/10.12688/wellcomeopenres.14619.3

Costa, Fernanda Cristina; Francisco, Amanda Fortes; Jayawardhana, Shiromani; Calderano, Simone Guedes; Lewis, Michael D; Olmo, Francisco; Beneke, Tom; Gluenz, Eva; Sunter, Jack; Dean, Samuel; +2 more... Kelly, John Morrison; Taylor, Martin Craig; (2018) Expanding the toolbox for Trypanosoma cruzi: A parasite line incorporating a bioluminescence-fluorescence dual reporter and streamlined CRISPR/Cas9 functionality for rapid in vivo localisation and phenotyping. PLoS neglected tropical diseases, 12 (4). e0006388-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006388

Currier, Rachel B; Cooper, Anneli; Burrell-Saward, Hollie; MacLeod, Annette; Alsford, Sam; (2018) Decoding the network of Trypanosoma brucei proteins that determines sensitivity to apolipoprotein-L1. PLoS pathogens, 14 (1). e1006855-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1006855

Deligianni, Elena; Silmon de Monerri, Natalie C; McMillan, Paul J; Bertuccini, Lucia; Superti, Fabiana; Manola, Maria; Spanos, Lefteris; Louis, Christos; Blackman, Michael J; Tilley, Leann; +1 more... Siden-Kiamos, Inga; (2018) Essential role of Plasmodium perforin-like protein 4 in ookinete midgut passage. PloS one, 13 (8). e0201651-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0201651

Delves, MJ; Angrisano, F; Blagborough, AM; (2018) Antimalarial Transmission-Blocking Interventions: Past, Present, and Future. Trends in parasitology, 34 (9). pp. 735-746. ISSN 1471-4922 DOI: https://doi.org/10.1016/j.pt.2018.07.001

Delves, Michael J; Miguel-Blanco, Celia; Matthews, Holly; Molina, Irene; Ruecker, Andrea; Yahiya, Sabrina; Straschil, Ursula; Abraham, Matthew; León, María Luisa; Fischer, Oliver J; +11 more... Rueda-Zubiaurre, Ainoa; Brandt, Jochen R; Cortés, Álvaro; Barnard, Anna; Fuchter, Matthew J; Calderón, Félix; Winzeler, Elizabeth A; Sinden, Robert E; Herreros, Esperanza; Gamo, Francisco J; Baum, Jake; (2018) A high throughput screen for next-generation leads targeting malaria parasite transmission. NATURE COMMUNICATIONS, 9 (1). 3805-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-05777-2

Deshpande, Devyani; Srivastava, Shashikant; Bendet, Paula; Martin, Katherine R; Cirrincione, Kayle N; Lee, Pooi S; Pasipanodya, Jotam G; Dheda, Keertan; Gumbo, Tawanda; (2018) Antibacterial and Sterilizing Effect of Benzylpenicillin in Tuberculosis. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 62 (2). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.02232-17

Dicko, Alassane; Roh, Michelle E; Diawara, Halimatou; Mahamar, Almahamoudou; Soumare, Harouna M; Lanke, Kjerstin; Bradley, John; Sanogo, Koualy; Kone, Daouda T; Diarra, Kalifa; +13 more... Keita, Sekouba; Issiaka, Djibrilla; Traore, Sekou F; McCulloch, Charles; Stone, Will JR; Hwang, Jimee; Müller, Olaf; Brown, Joelle M; Srinivasan, Vinay; Drakeley, Chris; Gosling, Roly; Chen, Ingrid; Bousema, Teun; (2018) Efficacy and safety of primaquine and methylene blue for prevention of Plasmodium falciparum transmission in Mali: a phase 2, single-blind, randomised controlled trial. The Lancet infectious diseases, 18 (6). pp. 627-639. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(18)30044-6

Dinko, Bismarck; Ansah, Felix; Agyare-Kwabi, Comfort; Tagboto, Senyo; Amoah, Linda Eva; Urban, Britta C; Sutherland, Colin J; Awandare, Gordon A; Williamson, Kim C; Binka, Fred N; +1 more... Deitsch, Kirk W; (2018) Gametocyte Development and Carriage in Ghanaian Individuals with Uncomplicated Plasmodium falciparum Malaria. The American journal of tropical medicine and hygiene, 99 (1). pp. 57-64. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.18-0077

Divis, Paul CS; Duffy, Craig W; Kadir, Khamisah A; Singh, Balbir; Conway, David J; (2018) Genome-wide mosaicism in divergence between zoonotic malaria parasite subpopulations with separate sympatric transmission cycles. Molecular ecology, 27 (4). pp. 860-870. ISSN 0962-1083 DOI: https://doi.org/10.1111/mec.14477

Domman, Daryl; Chowdhury, Fahima; Khan, Ashraful I; Dorman, Matthew J; Mutreja, Ankur; Uddin, Muhammad Ikhtear; Paul, Anik; Begum, Yasmin A; Charles, Richelle C; Calderwood, Stephen B; +6 more... Bhuiyan, Taufiqur R; Harris, Jason B; LaRocque, Regina C; Ryan, Edward T; Qadri, Firdausi; Thomson, Nicholas R; (2018) Defining endemic cholera at three levels of spatiotemporal resolution within Bangladesh. Nature genetics, 50 (7). pp. 951-955. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-018-0150-8

Dowd, Jennifer B; Fletcher, Helen A; Boccia, Delia; (2018) Social determinants and BCG efficacy: a call for a socio-biological approach to TB prevention. F1000Research, 7. 224-. ISSN 2046-1402 DOI: https://doi.org/10.12688/f1000research.14085.1

Duchene, Sebastian; Duchene, David A; Geoghegan, Jemma L; Dyson, Zoe A; Hawkey, Jane; Holt, Kathryn E; (2018) Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods. BMC EVOLUTIONARY BIOLOGY, 18 (1). 95-. ISSN 1471-2148 DOI: https://doi.org/10.1186/s12862-018-1210-5

Duffy, Craig W; Amambua-Ngwa, Alfred; Ahouidi, Ambroise D; Diakite, Mahamadou; Awandare, Gordon A; Ba, Hampate; Tarr, Sarah J; Murray, Lee; Stewart, Lindsay B; D'Alessandro, Umberto; +3 more... Otto, Thomas D; Kwiatkowski, Dominic P; Conway, David J; (2018) Multi-population genomic analysis of malaria parasites indicates local selection and differentiation at the gdv1 locus regulating sexual development. Scientific reports, 8 (1). 15763-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-34078-3

Duffy, Fergal J; Thompson, Ethan; Downing, Katrina; Suliman, Sara; Mayanja-Kizza, Harriet; Boom, W Henry; Thiel, Bonnie; Weiner Iii, January; Kaufmann, Stefan HE; Dover, Drew; +8 more... Tabb, David L; Dockrell, Hazel M; Ottenhoff, Tom HM; Tromp, Gerard; Scriba, Thomas J; Zak, Daniel E; Walzl, Gerhard; GC6-74 Consortium; (2018) A Serum Circulating miRNA Signature for Short-Term Risk of Progression to Active Tuberculosis Among Household Contacts. Frontiers in immunology, 9 (APR). 661-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2018.00661

Duggan, Gina M; Mostowy, Serge; (2018) Use of zebrafish to study Shigella infection. DISEASE MODELS & MECHANISMS, 11 (2). dmm032151-dmm032151. ISSN 1754-8403 DOI: https://doi.org/10.1242/dmm.032151

Elsheikha, Hany M; Regan, Carl S; Clark, C Graham; (2018) Novel Entamoeba Findings in Nonhuman Primates. Trends in parasitology, 34 (4). pp. 283-294. ISSN 1471-4922 DOI: https://doi.org/10.1016/j.pt.2017.12.008

Ezewudo, Matthew; Borens, Amanda; Chiner-Oms, Álvaro; Miotto, Paolo; Chindelevitch, Leonid; Starks, Angela M; Hanna, Debra; Liwski, Richard; Zignol, Matteo; Gilpin, Christopher; +19 more... Niemann, Stefan; Kohl, Thomas Andreas; Warren, Robin M; Crook, Derrick; Gagneux, Sebastien; Hoffner, Sven; Rodrigues, Camilla; Comas, Iñaki; Engelthaler, David M; Alland, David; Rigouts, Leen; Lange, Christoph; Dheda, Keertan; Hasan, Rumina; McNerney, Ruth; Cirillo, Daniela M; Schito, Marco; Rodwell, Timothy C; Posey, James; (2018) Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase. SCIENTIFIC REPORTS, 8 (1). 15382-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-33731-1

Fang, Hanwei; Gomes, Ana Rita; Klages, Natacha; Pino, Paco; Maco, Bohumil; Walker, Eloise M; Zenonos, Zenon A; Angrisano, Fiona; Baum, Jake; Doerig, Christian; +3 more... Baker, David A; Billker, Oliver; Brochet, Mathieu; (2018) Epistasis studies reveal redundancy among calcium-dependent protein kinases in motility and invasion of malaria parasites. Nature communications, 9 (1). 4248-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-06733-w

Faulds-Pain, Alexandra; Shaw, Helen Alexandra; Terra, Vanessa Sofia; Kellner, Steven; Brockmeier, Susan L; Wren, Brendan W; (2018) The Streptococcos suis sortases SrtB and SrtF are essential for disease in pigs. Microbiology, 165 (2). pp. 163-173. ISSN 1350-0872 DOI: https://doi.org/10.1099/mic.0.000752

Fernandes, Jorlan; Guterres, Alexandro; de Oliveira, Renata Carvalho; Chamberlain, John; Lewandowski, Kuiama; Teixeira, Bernardo Rodrigues; Coelho, Thayssa Alves; Crisóstomo, Charle Ferreira; Bonvicino, Cibele Rodrigues; D'Andrea, Paulo Sérgio; +2 more... Hewson, Roger; de Lemos, Elba Regina Sampaio; (2018) Xapuri virus, a novel mammarenavirus: natural reassortment and increased diversity between New World viruses. Emerging microbes & infections, 7 (1). 120-. ISSN 2222-1751 DOI: https://doi.org/10.1038/s41426-018-0119-9

Ferreras Antolín, Laura; Kadambari, Seilesh; Braccio, Serena; Tang, Julian Wei-Tze; Xerry, Jacqueline; Allen, David James; Ladhani, Shamez N; Parechovirus Surveillance Network; (2018) Increased detection of human parechovirus infection in infants in England during 2016: epidemiology and clinical characteristics. Archives of disease in childhood, 103 (11). pp. 1061-1066. ISSN 0003-9888 DOI: https://doi.org/10.1136/archdischild-2017-314281 Full text not available from this repository.

Fletcher, Helen A; (2018) Systems approaches to correlates of protection and progression to TB disease. Seminars in immunology, 39 (C). pp. 81-87. ISSN 1044-5323 DOI: https://doi.org/10.1016/j.smim.2018.10.001 Full text not available from this repository.

Fletcher, Helen A; Chatterjee, Mitali; Cooper, Andrea; Hussell, Tracy; Kaye, Paul M; Prior, Joann; Reljic, Rajko; Vermaak, Samantha; Vordermeier, Martin; Williams, Ann; +1 more... McShane, Helen; (2018) VALIDATE: Exploiting the synergy between complex intracellular pathogens to expedite vaccine research and development for tuberculosis, leishmaniasis, melioidosis and leprosy. F1000Research, 7. 485-. ISSN 2046-1402 DOI: https://doi.org/10.12688/f1000research.14386.1

Fornace, Kimberly M; Herman, Lou S; Abidin, Tommy R; Chua, Tock Hing; Daim, Sylvia; Lorenzo, Pauline J; Grignard, Lynn; Nuin, Nor Afizah; Ying, Lau Tiek; Grigg, Matthew J; +5 more... William, Timothy; Espino, Fe; Cox, Jonathan; Tetteh, Kevin KA; Drakeley, Chris J; (2018) Exposure and infection to Plasmodium knowlesi in case study communities in Northern Sabah, Malaysia and Palawan, The Philippines. PLoS neglected tropical diseases, 12 (6). e0006432-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006432

Fornace, Kimberly M; Surendra, Henry; Abidin, Tommy Rowel; Reyes, Ralph; Macalinao, Maria LM; Stresman, Gillian; Luchavez, Jennifer; Ahmad, Riris A; Supargiyono, Supargiyono; Espino, Fe; +2 more... Drakeley, Chris J; Cook, Jackie; (2018) Use of mobile technology-based participatory mapping approaches to geolocate health facility attendees for disease surveillance in low resource settings. International journal of health geographics, 17 (1). 21-. ISSN 1476-072X DOI: https://doi.org/10.1186/s12942-018-0141-0

Francisco, Amanda Fortes; Jayawardhana, Shiromani; Taylor, Martin C; Lewis, Michael D; Kelly, John M; (2018) Assessing the Effectiveness of Curative Benznidazole Treatment in Preventing Chronic Cardiac Pathology in Experimental Models of Chagas Disease. Antimicrobial agents and chemotherapy, 62 (10). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.00832-18

Fraschka, Sabine A; Filarsky, Michael; Hoo, Regina; Niederwieser, Igor; Yam, Xue Yan; Brancucci, Nicolas MB; Mohring, Franziska; Mushunje, Annals T; Huang, Ximei; Christensen, Peter R; +8 more... Nosten, Francois; Bozdech, Zbynek; Russell, Bruce; Moon, Robert W; Marti, Matthias; Preiser, Peter R; Bártfai, Richárd; Voss, Till S; (2018) Comparative Heterochromatin Profiling Reveals Conserved and Unique Epigenome Signatures Linked to Adaptation and Development of Malaria Parasites. Cell host & microbe, 23 (3). 407-420.e8. ISSN 1931-3128 DOI: https://doi.org/10.1016/j.chom.2018.01.008

Gatuguta, Anne; Merrill, Katherine G; Colombini, Manuela; Soremekun, Seyi; Seeley, Janet; Mwanzo, Isaac; Devries, Karen; (2018) Missed treatment opportunities and barriers to comprehensive treatment for sexual violence survivors in Kenya: a mixed methods study. BMC public health, 18 (1). 769-. ISSN 1471-2458 DOI: https://doi.org/10.1186/s12889-018-5681-5

Ghashghaei, Ouldouz; Kielland, Nicola; Revés, Marc; Taylor, Martin C; Kelly, John M; Di Pietro, Ornella; Muñoz-Torrero, Diego; Pérez, Belén; Lavilla, Rodolfo; (2018) Tetrasubstituted Imidazolium Salts as Potent Antiparasitic Agents against African and American Trypanosomiases. Molecules (Basel, Switzerland), 23 (1). p. 177. ISSN 1420-3049 DOI: https://doi.org/10.3390/molecules23010177

Giuliani, Sandra; Silva, Arthur C; Borba, Joyce VVB; Ramos, Pablo IP; Paveley, Ross A; Muratov, Eugene N; Andrade, Carolina Horta; Furnham, Nicholas; (2018) Computationally-guided drug repurposing enables the discovery of kinase targets and inhibitors as new schistosomicidal agents. PLoS computational biology, 14 (10). e1006515-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1006515

Gorrie, Claire L; Mirceta, Mirjana; Wick, Ryan R; Judd, Louise M; Wyres, Kelly L; Thomson, Nicholas R; Strugnell, Richard A; Pratt, Nigel F; Garlick, Jill S; Watson, Kerrie M; +5 more... Hunter, Peter C; McGloughlin, Steve A; Spelman, Denis W; Jenney, Adam WJ; Holt, Kathryn E; (2018) Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital. CLINICAL INFECTIOUS DISEASES, 67 (2). pp. 161-170. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy027

Gouliouris, Theodore; Raven, Kathy E; Ludden, Catherine; Blane, Beth; Corander, Jukka; Horner, Carolyne S; Hernandez-Garcia, Juan; Wood, Paul; Hadjirin, Nazreen F; Radakovic, Milorad; +5 more... Holmes, Mark A; de Goffau, Marcus; Brown, Nicholas M; Parkhill, Julian; Peacock, Sharon J; (2018) Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom. mBio, 9 (6). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.01780-18

Greenhouse, Bryan; Smith, David L; Rodríguez-Barraquer, Isabel; Mueller, Ivo; Drakeley, Chris J; (2018) Taking Sharper Pictures of Malaria with CAMERAs: Combined Antibodies to Measure Exposure Recency Assays. The American journal of tropical medicine and hygiene, 99 (5). pp. 1120-1127. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.18-0303

Grigg, Matthew J; William, Timothy; Barber, Bridget E; Rajahram, Giri S; Menon, Jayaram; Schimann, Emma; Piera, Kim; Wilkes, Christopher S; Patel, Kaajal; Chandna, Arjun; +3 more... Drakeley, Christopher J; Yeo, Tsin W; Anstey, Nicholas M; (2018) Age-Related Clinical Spectrum of Plasmodium knowlesi Malaria and Predictors of Severity. Clinical infectious diseases, 67 (3). pp. 350-359. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy065

Grignard, Lynn; Gonçalves, Bronner P; Early, Angela M; Daniels, Rachel F; Tiono, Alfred B; Guelbéogo, Wamdaogo M; Ouédraogo, Alphonse; van Veen, Elke M; Lanke, Kjerstin; Diarra, Amidou; +8 more... Nebie, Issa; Sirima, Sodiomon B; Targett, Geoff A; Volkman, Sarah K; Neafsey, Daniel E; Wirth, Dyann F; Bousema, Teun; Drakeley, Chris; (2018) Transmission of molecularly undetectable circulating parasite clones leads to high infection complexity in mosquitoes post feeding. International journal for parasitology, 48 (8). pp. 671-677. ISSN 0020-7519 DOI: https://doi.org/10.1016/j.ijpara.2018.02.005

Grint, Daniel; Alisjhabana, Bachti; Ugarte-Gil, Cesar; Riza, Anca-Leila; Walzl, Gerhard; Pearson, Fiona; Ruslami, Rovina; Moore, David AJ; Ioana, Mihai; McAllister, Susan; +10 more... Ronacher, Katharina; Koeseomadinata, Raspati C; Kerry-Barnard, Sarah R; Coronel, Jorge; Malherbe, Stephanus T; Dockrell, Hazel M; Hill, Philip C; Van Crevel, Reinout; Critchley, Julia A; TANDEM consortium; (2018) Accuracy of diabetes screening methods used for people with tuberculosis, Indonesia, Peru, Romania, South Africa. Bulletin of the World Health Organization, 96 (11). pp. 738-749. ISSN 0042-9686 DOI: https://doi.org/10.2471/BLT.17.206227

Guelbéogo, Wamdaogo M; Gonçalves, Bronner Pamplona; Grignard, Lynn; Bradley, John; Serme, Samuel S; Hellewell, Joel; Lanke, Kjerstin; Zongo, Soumanaba; Sepúlveda, Nuno; Soulama, Issiaka; +5 more... Wangrawa, Dimitri W; Yakob, Laith; Sagnon, N'Falé; Bousema, Teun; Drakeley, Chris; (2018) Variation in natural exposure to anopheles mosquitoes and its effects on malaria transmission. eLife, 7. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.32625

Guo, Minshan; Wang, Ke; Qiao, Ning; Yardley, Vanessa; Li, Mingzhong; (2018) Investigating Permeation Behavior of Flufenamic Acid Cocrystals Using a Dissolution and Permeation System. Molecular pharmaceutics, 15 (9). pp. 4257-4272. ISSN 1543-8384 DOI: https://doi.org/10.1021/acs.molpharmaceut.8b00670

Gupta-Wright, Ankur; Tomlinson, Gillian S; Rangaka, Molebogeng X; Fletcher, Helen A; (2018) World TB Day 2018: The Challenge of Drug Resistant Tuberculosis. F1000Research, 7. 217-. ISSN 2046-1402 DOI: https://doi.org/10.12688/f1000research.14088.1

Harding-Esch, EM; Cousins, EC; Chow, S-LC; Phillips, LT; Hall, CL; Cooper, N; Fuller, SS; Nori, AV; Patel, R; Thomas-William, S; +8 more... Whitlock, G; Edwards, SJE; Green, M; Clarkson, J; Arlett, B; Dunbar, JK; Lowndes, CM; Sadiq, ST; (2018) A 30-Min Nucleic Acid Amplification Point-of-Care Test for Genital Chlamydia trachomatis Infection in Women: A Prospective, Multi-center Study of Diagnostic Accuracy. EBioMedicine, 28. pp. 120-127. ISSN 2352-3964 DOI: https://doi.org/10.1016/j.ebiom.2017.12.029

Harding-Esch, EM; Fuller, SS; Chow, S-LC; Nori, AV; Harrison, MA; Parker, M; Piepenburg, O; Forrest, MS; Brooks, DG; Patel, R; +8 more... Hay, PE; Fearnley, N; Pond, MJ; Dunbar, JK; Butcher, PD; Planche, T; Lowndes, CM; Sadiq, ST; (2018) Diagnostic accuracy of a prototype rapid chlamydia and gonorrhoea recombinase polymerase amplification assay: a multicentre cross-sectional preclinical evaluation. Clinical microbiology and infection, 25 (3). 380.e1-380.e7. ISSN 1198-743X DOI: https://doi.org/10.1016/j.cmi.2018.06.003

Harvala, Heli; Broberg, Eeva; Benschop, Kimberley; Berginc, Natasa; Ladhani, Shamez; Susi, Petri; Christiansen, Claus; McKenna, James; Allen, David; Makiello, Phoebe; +56 more... McAllister, Georgina; Carmen, Mirabelli; Zakikhany, Katherina; Dyrdak, Robert; Nielsen, Xiaohui; Madsen, Tina; Paul, Joel; Moore, Catherine; von Eije, Karin; Piralla, Antonio; Carlier, Mieke; Vanoverschelde, Laura; Poelman, Randy; Anton, Andrés; López-Labrador, F Xavier; Pellegrinelli, Laura; Keeren, Kathrin; Maier, Melanie; Cassidy, Hayley; Derdas, Stavros; Savolainen-Kopra, Carita; Diedrich, Sabine; Nordbø, Svein; Buesa, Javier; Bailly, Jean-Luc; Baldanti, Fausto; MacAdam, Andrew; Mirand, Audrey; Dudman, Susanne; Schuffenecker, Isabelle; Kadambari, Seilesh; Neyts, Johan; Griffiths, Michael J; Richter, Jan; Margaretto, Cristina; Govind, Sheila; Morley, Ursula; Adams, Ortwin; Krokstad, Sidsel; Dean, Jonathan; Pons-Salort, Margarita; Prochazka, Birgit; Cabrerizo, Maria; Majumdar, Manasi; Nebbia, Gaia; Wiewel, Maryse; Cottrell, Simon; Coyle, Peter; Martin, Javier; Moore, Catrin; Midgley, Sofie; Horby, Peter; Wolthers, Katja; Simmonds, Peter; Niesters, Hubert; Fischer, Thea K; (2018) Recommendations for enterovirus diagnostics and characterisation within and beyond Europe. Journal of clinical virology, 101. pp. 11-17. ISSN 1386-6532 DOI: https://doi.org/10.1016/j.jcv.2018.01.008

Hasso-Agopsowicz, Mateusz; Scriba, Thomas J; Hanekom, Willem A; Dockrell, Hazel M; Smith, Steven G; (2018) Differential DNA methylation of potassium channel KCa3.1 and immune signalling pathways is associated with infant immune responses following BCG vaccination. Scientific reports, 8 (1). 13086-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-31537-9

Hawkey, Jane; Ascher, David B; Judd, Louise M; Wick, Ryan R; Kostoulias, Xenia; Cleland, Heather; Spelman, Denis W; Padiglione, Alex; Peleg, Anton Y; Holt, Kathryn E; (2018) Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection. MICROBIAL GENOMICS, 4 (3). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000165

Henrici, Ryan C; Sutherland, Colin J; (2018) Alternative pathway to reduced artemisinin susceptibility in Plasmodium falciparum. Proceedings of the National Academy of Sciences of the United States of America, 115 (50). pp. 12556-12558. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1818287115

Herbert, Jenny A; Kay, Emily J; Faustini, Sian E; Richter, Alex; Abouelhadid, Sherif; Cuccui, Jon; Wren, Brendan; Mitchell, Timothy J; (2018) Production and efficacy of a low-cost recombinant pneumococcal protein polysaccharide conjugate vaccine. Vaccine, 36 (26). pp. 3809-3819. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.05.036

Herman, Lou S; Fornace, Kimberly; Phelan, Jody; Grigg, Matthew J; Anstey, Nicholas M; William, Timothy; Moon, Robert W; Blackman, Michael J; Drakeley, Chris J; Tetteh, Kevin KA; (2018) Identification and validation of a novel panel of Plasmodium knowlesi biomarkers of serological exposure. PLoS neglected tropical diseases, 12 (6). e0006457-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006457

Higgins, Matthew; Ravenhall, Matt; Ward, Daniel; Phelan, Jody; Ibrahim, Amy; Forrest, Matthew S; Clark, Taane G; Campino, Susana; (2018) PrimedRPA: primer design for recombinase polymerase amplification assays. Bioinformatics (Oxford, England), 35 (4). pp. 682-684. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/bty701

Ho, Eliza Xin Pei; Cheung, Chui Ming Gemmy; Sim, Shuzhen; Chu, Collins Wenhan; Wilm, Andreas; Lin, Clarabelle Bitong; Mathur, Ranjana; Wong, Doric; Chan, Choi Mun; Bhagarva, Mayuri; +6 more... Laude, Augustinus; Lim, Tock Han; Wong, Tien Yin; Cheng, Ching Yu; Davila, Sonia; Hibberd, Martin; (2018) Human pharyngeal microbiota in age-related macular degeneration. PloS one, 13 (8). e0201768-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0201768

Hoffmann, Angelika; Wassmer, Samuel C; (2018) New Syndromes Identified by Neuroimaging during Cerebral Malaria. The American journal of tropical medicine and hygiene, 98 (2). pp. 349-350. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.17-0926

Holt, Kathryn E; McAdam, Paul; Thai, Phan Vuong Khac; Thuong, Nguyen Thuy Thuong; Ha, Dang Thi Minh; Lan, Nguyen Ngoc; Lan, Nguyen Huu; Nhu, Nguyen Thi Quynh; Hai, Hoang Thanh; Ha, Vu Thi Ngoc; +11 more... Thwaites, Guy; Edwards, David J; Nath, Artika P; Pham, Kym; Ascher, David B; Farrar, Jeremy; Khor, Chiea Chuen; Teo, Yik Ying; Inouye, Michael; Caws, Maxine; Dunstan, Sarah J; (2018) Frequent transmission of the Mycobacterium tuberculosis Beijing lineage and positive selection for the EsxW Beijing variant in Vietnam. NATURE GENETICS, 50 (6). pp. 849-856. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-018-0117-9

Horesh, Gal; Harms, Alexander; Fino, Cinzia; Parts, Leopold; Gerdes, Kenn; Heinz, Eva; Thomson, Nicholas Robert; (2018) SLING: a tool to search for linked genes in bacterial datasets. Nucleic acids research, 46 (21). e128-. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gky738

Husna, Asma Ul; Wang, Nancy; Cobbold, Simon A; Newton, Hayley J; Hocking, Dianna M; Wilksch, Jonathan J; Scott, Timothy A; Davies, Mark R; Hinton, Jay C; Tree, Jai J; +3 more... Lithgow, Trevor; McConville, Malcolm J; Strugnell, Richard A; (2018) Methionine biosynthesis and transport are functionally redundant for the growth and virulence of Salmonella Typhimurium. The Journal of biological chemistry, 293 (24). pp. 9506-9519. ISSN 0021-9258 DOI: https://doi.org/10.1074/jbc.RA118.002592

Ijaz, Umer Zeeshan; Sivaloganathan, Lojika; McKenna, Aaron; Richmond, Anne; Kelly, Carmel; Linton, Mark; Stratakos, Alexandros Ch; Lavery, Ursula; Elmi, Abdi; Wren, Brendan W; +3 more... Dorrell, Nick; Corcionivoschi, Nicolae; Gundogdu, Ozan; (2018) Comprehensive Longitudinal Microbiome Analysis of the Chicken Cecum Reveals a Shift From Competitive to Environmental Drivers and a Window of Opportunity for Campylobacter. Frontiers in microbiology, 9. 2452-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2018.02452

Ijaz, Umer Zeeshan; Sivaloganathan, Lojika; Mckenna, Aaron; Richmond, Anne; Kelly, Carmel; Linton, Mark; Stratakos, Alexandros; Lavery, Ursula; Elmi, Abdi; Wren, Brendan; +3 more... Dorrell, Nick; Corcionivoschi, Nicolae; Gundogdu, Ozan; (2018) Comprehensive longitudinal microbiome analysis of the chicken cecum reveals a shift from competitive to environmental drivers and a window of opportunity for <i>Campylobacter</i>. Working Paper. Frontiers Media. DOI: https://doi.org/10.1101/341842

Ingle, Danielle J; Levine, Myron M; Kotloff, Karen L; Holt, Kathryn E; Robins-Browne, Roy M; (2018) Dynamics of antimicrobial resistance in intestinal Escherichia coli from children in community settings in South Asia and sub-Saharan Africa. Nature microbiology, 3 (9). pp. 1063-1073. ISSN 2058-5276 DOI: https://doi.org/10.1038/s41564-018-0217-4

Inglesfield, Sarah; Jasiulewicz, Aleksandra; Hopwood, Matthew; Tyrrell, James; Youlden, George; Mazon-Moya, Maria; Millington, Owain R; Mostowy, Serge; Jabbari, Sara; Voelz, Kerstin; (2018) Robust Phagocyte Recruitment Controls the Opportunistic Fungal Pathogen Mucor circinelloides in Innate Granulomas In Vivo. MBIO, 9 (2). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.02010-17

Jagannathan, Prasanna; Kakuru, Abel; Okiring, Jaffer; Muhindo, Mary K; Natureeba, Paul; Nakalembe, Miriam; Opira, Bishop; Olwoch, Peter; Nankya, Felistas; Ssewanyana, Isaac; +15 more... Tetteh, Kevin; Drakeley, Chris; Beeson, James; Reiling, Linda; Clark, Tamara D; Rodriguez-Barraquer, Isabel; Greenhouse, Bryan; Wallender, Erika; Aweeka, Francesca; Prahl, Mary; Charlebois, Edwin D; Feeney, Margaret E; Havlir, Diane V; Kamya, Moses R; Dorsey, Grant; (2018) Dihydroartemisinin-piperaquine for intermittent preventive treatment of malaria during pregnancy and risk of malaria in early childhood: A randomized controlled trial. PLoS medicine, 15 (7). e1002606-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1002606

Jervis, Adrian J; Wood, Alison G; Cain, Joel A; Butler, Jonathan A; Frost, Helen; Lord, Elizabeth; Langdon, Rebecca; Cordwell, Stuart J; Wren, Brendan W; Linton, Dennis; (2018) Functional analysis of the Helicobacter pullorum N-linked protein glycosylation system. Glycobiology, 28 (4). pp. 233-244. ISSN 0959-6658 DOI: https://doi.org/10.1093/glycob/cwx110

Kadambari, Seilesh; Braccio, Serena; Ribeiro, Sonia; Allen, David J; Pebody, Richard; Brown, David; Cunney, Robert; Sharland, Mike; Ladhani, Shamez; (2018) Enterovirus and parechovirus meningitis in infants younger than 90 days old in the UK and Republic of Ireland: a British Paediatric Surveillance Unit study. Archives of Disease in Childhood, 104 (6). pp. 552-557. ISSN 0003-9888 DOI: https://doi.org/10.1136/archdischild-2018-315643

Kafetzopoulou, Liana E; Efthymiadis, Kyriakos; Lewandowski, Kuiama; Crook, Ant; Carter, Dan; Osborne, Jane; Aarons, Emma; Hewson, Roger; Hiscox, Julian A; Carroll, Miles W; +2 more... Vipond, Richard; Pullan, Steven T; (2018) Assessment of metagenomic Nanopore and Illumina sequencing for recovering whole genome sequences of chikungunya and dengue viruses directly from clinical samples. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 23 (50). ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2018.23.50.1800228

Kamuyu, Gathoni; Tuju, James; Kimathi, Rinter; Mwai, Kennedy; Mburu, James; Kibinge, Nelson; Chong Kwan, Marisa; Hawkings, Sam; Yaa, Reuben; Chepsat, Emily; +16 more... Njunge, James M; Chege, Timothy; Guleid, Fatuma; Rosenkranz, Micha; Kariuki, Christopher K; Frank, Roland; Kinyanjui, Samson M; Murungi, Linda M; Bejon, Philip; Färnert, Anna; Tetteh, Kevin KA; Beeson, James G; Conway, David J; Marsh, Kevin; Rayner, Julian C; Osier, Faith HA; (2018) KILchip v1.0: A Novel Plasmodium falciparum Merozoite Protein Microarray to Facilitate Malaria Vaccine Candidate Prioritization. Frontiers in Immunology, 9. 2866-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2018.02866

Kewcharoenwong, Chidchamai; Prabowo, Satria A; Bancroft, Gregory J; Fletcher, Helen A; Lertmemongkolchai, Ganjana; (2018) Glibenclamide Reduces Primary Human Monocyte Functions Against Tuberculosis Infection by Enhancing M2 Polarization. Frontiers in immunology, 9 (SEP). 2109-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2018.02109

Kimuda, Simon G; Biraro, Irene Andia; Bagaya, Bernard S; Raynes, John G; Cose, Stephen; (2018) Characterising antibody avidity in individuals of varied Mycobacterium tuberculosis infection status using surface plasmon resonance. PloS one, 13 (10). e0205102-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0205102

Kiyuka, Patience K; Agoti, Charles N; Munywoki, Patrick K; Njeru, Regina; Bett, Anne; Otieno, James R; Otieno, Grieven P; Kamau, Everlyn; Clark, Taane G; van der Hoek, Lia; +3 more... Kellam, Paul; Nokes, D James; Cotten, Matthew; (2018) Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya. The Journal of infectious diseases, 217 (11). pp. 1728-1739. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiy098

Kohli, Mikashmi; Schiller, Ian; Dendukuri, Nandini; Dheda, Keertan; Denkinger, Claudia M; Schumacher, Samuel G; Steingart, Karen R; (2018) Xpert® MTB/RIF assay for extrapulmonary tuberculosis and rifampicin resistance. COCHRANE DATABASE OF SYSTEMATIC REVIEWS, 8 (8). CD012768-. ISSN 1469-493X DOI: https://doi.org/10.1002/14651858.CD012768.pub2

Kolbasov, Denis; Titov, Ilya; Tsybanov, Sodnom; Gogin, Andrey; Malogolovkin, Alexander; (2018) African Swine Fever Virus, Siberia, Russia, 2017. EMERGING INFECTIOUS DISEASES, 24 (4). pp. 796-798. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2404.171238

Krokowski, Sina; Lobato-Márquez, Damián; Chastanet, Arnaud; Pereira, Pedro Matos; Angelis, Dimitrios; Galea, Dieter; Larrouy-Maumus, Gerald; Henriques, Ricardo; Spiliotis, Elias T; Carballido-López, Rut; +1 more... Mostowy, Serge; (2018) Septins Recognize and Entrap Dividing Bacterial Cells for Delivery to Lysosomes. Cell Host and Microbe, 24 (6). 866-874.e4. ISSN 1931-3128 DOI: https://doi.org/10.1016/j.chom.2018.11.005

Krokowski, Sina; Lobato-Márquez, Damián; Mostowy, Serge; (2018) Mitochondria promote septin assembly into cages that entrap Shigella for autophagy. Autophagy, 14 (5). pp. 913-914. ISSN 1554-8627 DOI: https://doi.org/10.1080/15548627.2016.1228496

Kwambana-Adams, Brenda A; Amaza, Rahab C; Okoi, Catherine; Rabiu, Murtala; Worwui, Archibald; Foster-Nyarko, Ebenezer; Ebruke, Bernard; Sesay, Abdul K; Senghore, Madikay; Umar, Abdullahi S; +31 more... Usman, Rabi; Atiku, Adamu; Abdullahi, Garba; Buhari, Yahaya; Sani, Rabiu; Bako, Husaini U; Abdullahi, Bashir; Yarima, Alliyu I; Sikiru, Badaru; Moses, Aderinola Olaolu; Popoola, Michael O; Ekeng, Eme; Olayinka, Adebola; Mba, Nwando; Kankia, Adamu; Mamadu, Ibrahim N; Okudo, Ifeanyi; Stephen, Mary; Ronveaux, Olivier; Busuttil, Jason; Mwenda, Jason M; Abdulaziz, Mohammed; Gummi, Sulaiman A; Adedeji, Adebayo; Bita, Andre; Omar, Linda; Djingarey, Mamoudou Harouna; Alemu, Wondimagegnehu; D'Alessandro, Umberto; Ihekweazu, Chikwe; Antonio, Martin; (2018) Meningococcus serogroup C clonal complex ST-10217 outbreak in Zamfara State, Northern Nigeria. Scientific reports, 8 (1). 14194-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-32475-2

Labadie, Thomas; Batéjat, Christophe; Manuguerra, Jean-Claude; Leclercq, India; (2018) Influenza Virus Segment Composition Influences Viral Stability in the Environment. Frontiers in microbiology, 9. 1496-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2018.01496

Lam, Margaret MC; Wick, Ryan R; Wyres, Kelly L; Gorrie, Claire L; Judd, Louise M; Jenney, Adam WJ; Brisse, Sylvain; Holt, Kathryn E; (2018) Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations. MICROBIAL GENOMICS, 4 (9). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000196

Lam, Margaret MC; Wyres, Kelly L; Duchêne, Sebastian; Wick, Ryan R; Judd, Louise M; Gan, Yunn-Hwen; Hoh, Chu-Han; Archuleta, Sophia; Molton, James S; Kalimuddin, Shirin; +4 more... Koh, Tse Hsien; Passet, Virginie; Brisse, Sylvain; Holt, Kathryn E; (2018) Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination. Nature communications, 9 (1). 2703-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-05114-7

Lam, Margaret MC; Wyres, Kelly L; Judd, Louise M; Wick, Ryan R; Jenney, Adam; Brisse, Sylvain; Holt, Kathryn E; (2018) Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae. Genome medicine, 10 (1). 77-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-018-0587-5

Large, Jonathan M; Birchall, Kristian; Bouloc, Nathalie S; Merritt, Andy T; Smiljanic-Hurley, Ela; Tsagris, Denise J; Wheldon, Mary C; Ansell, Keith H; Coombs, Peter J; Kettleborough, Catherine A; +5 more... Whalley, David; Stewart, Lindsay B; Bowyer, Paul W; Baker, David A; Osborne, Simon A; (2018) Potent inhibitors of malarial P. Falciparum protein kinase G: Improving the cell activity of a series of imidazopyridines. Bioorganic & medicinal chemistry letters, 29 (3). pp. 509-514. ISSN 0960-894X DOI: https://doi.org/10.1016/j.bmcl.2018.11.039

Last, AR; Pickering, H; Roberts, CH; Coll, F; Phelan, J; Burr, SE; Cassama, E; Nabicassa, M; Seth-Smith, HMB; Hadfield, J; +7 more... Cutcliffe, LT; Clarke, IN; Mabey, DCW; Bailey, RL; Clark, TG; Thomson, NR; Holland, MJ; (2018) Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity. Genome medicine, 10 (1). 15-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-018-0521-x

Lee, Hyun Jae; Georgiadou, Athina; Otto, Thomas D; Levin, Michael; Coin, Lachlan J; Conway, David J; Cunnington, Aubrey J; (2018) Transcriptomic Studies of Malaria: a Paradigm for Investigation of Systemic Host-Pathogen Interactions. Microbiology and molecular biology reviews, 82 (2). ISSN 1092-2172 DOI: https://doi.org/10.1128/MMBR.00071-17

Lee, Hyun Jae; Georgiadou, Athina; Walther, Michael; Nwakanma, Davis; Stewart, Lindsay B; Levin, Michael; Otto, Thomas D; Conway, David J; Coin, Lachlan J; Cunnington, Aubrey J; (2018) Integrated pathogen load and dual transcriptome analysis of systemic host-pathogen interactions in severe malaria. Science translational medicine, 10 (447). eaar3619-eaar3619. ISSN 1946-6234 DOI: https://doi.org/10.1126/scitranslmed.aar3619

Leon, Lydia J; Doyle, Ronan; Diez-Benavente, Ernest; Clark, Taane G; Klein, Nigel; Stanier, Philip; Moore, Gudrun E; (2018) Enrichment of Clinically Relevant Organisms in Spontaneous Preterm-Delivered Placentas and Reagent Contamination across All Clinical Groups in a Large Pregnancy Cohort in the United Kingdom. Applied and environmental microbiology, 84 (14). ISSN 0099-2240 DOI: https://doi.org/10.1128/AEM.00483-18

Lerm, M; Dockrell, HM; (2018) Addressing diversity in tuberculosis using multidimensional approaches. Journal of internal medicine, 284 (2). pp. 116-124. ISSN 0954-6820 DOI: https://doi.org/10.1111/joim.12776 Full text not available from this repository.

Lewis, Michael D; Francisco, Amanda F; Jayawardhana, Shiromani; Langston, Harry; Taylor, Martin C; Kelly, John M; (2018) Imaging the development of chronic Chagas disease after oral transmission. Scientific reports, 8 (1). 11292-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-29564-7

Li, Siyu; Roy, Polly; Travesset, Alex; Zandi, Roya; (2018) Why large icosahedral viruses need scaffolding proteins. Proceedings of the National Academy of Sciences of the United States of America, 115 (43). pp. 10971-10976. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1807706115 Full text not available from this repository.

Lobato-Márquez, Damián; Krokowski, Sina; Sirianni, Andrea; Larrouy-Maumus, Gerald; Mostowy, Serge; (2018) A requirement for septins and the autophagy receptor p62 in the proliferation of intracellular Shigella. Cytoskeleton (Hoboken, NJ), 76 (1). pp. 163-172. ISSN 1949-3584 DOI: https://doi.org/10.1002/cm.21453

Longbottom, David; Sait, Michelle; Livingstone, Morag; Laroucau, Karine; Sachse, Konrad; Harris, Simon R; Thomson, Nicholas R; Seth-Smith, Helena MB; (2018) Genomic evidence that the live Chlamydia abortus vaccine strain 1B is not attenuated and has the potential to cause disease. VACCINE, 36 (25). pp. 3593-3598. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.05.042

Loraine, Jessica; Heinz, Eva; De Sousa Almeida, Jessica; Milevskyy, Oleksandr; Voravuthikunchai, Supayang P; Srimanote, Potjanee; Kiratisin, Pattarachai; Thomson, Nicholas R; Taylor, Peter W; (2018) Complement Susceptibility in Relation to Genome Sequence of Recent Klebsiella pneumoniae Isolates from Thai Hospitals. mSphere, 3 (6). ISSN 2379-5042 DOI: https://doi.org/10.1128/mSphere.00537-18

Lyth, Oliver; Vizcay-Barrena, Gema; Wright, Katherine E; Haase, Silvia; Mohring, Franziska; Najer, Adrian; Henshall, Isabelle G; Ashdown, George W; Bannister, Lawrence H; Drew, Damien R; +5 more... Beeson, James G; Fleck, Roland A; Moon, Robert W; Wilson, Danny W; Baum, Jake; (2018) Cellular dissection of malaria parasite invasion of human erythrocytes using viable Plasmodium knowlesi merozoites. Scientific reports, 8 (1). 10165-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-28457-z

MacLean, Lorna M; Thomas, John; Lewis, Michael D; Cotillo, Ignacio; Gray, David W; De Rycker, Manu; (2018) Development of Trypanosoma cruzi in vitro assays to identify compounds suitable for progression in Chagas' disease drug discovery. PLoS neglected tropical diseases, 12 (7). e0006612-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006612

Macdonald, Sarah E; van Diemen, Pauline M; Martineau, Henny; Stevens, Mark P; Tomley, Fiona M; Stabler, Richard A; Blake, Damer P; (2018) Impact of Eimeria tenella Coinfection on Campylobacter jejuni Colonization of the Chicken. Infection and immunity, 87 (2). ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.00772-18

Majumdar, Manasi; Klapsa, Dimitra; Wilton, Thomas; Akello, Joyce; Anscombe, Catherine; Allen, David; Mee, Edward T; Minor, Philip D; Martin, Javier; (2018) Isolation of Vaccine-Like Poliovirus Strains in Sewage Samples From the United Kingdom. The Journal of Infectious Diseases, 217 (8). pp. 1222-1230. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jix667

Malpartida-Cardenas, Kenny; Rodriguez-Manzano, Jesus; Yu, Ling-Shan; Delves, Michael J; Nguon, Chea; Chotivanich, Kesinee; Baum, Jake; Georgiou, Pantelis; (2018) Allele-Specific Isothermal Amplification Method Using Unmodified Self-Stabilizing Competitive Primers. ANALYTICAL CHEMISTRY, 90 (20). pp. 11972-11980. ISSN 0003-2700 DOI: https://doi.org/10.1021/acs.analchem.8b02416

Manin, Benny Obrain; Drakeley, Chris J; Chua, Tock H; (2018) Mitochondrial variation in subpopulations of Anopheles balabacensis Baisas in Sabah, Malaysia (Diptera: Culicidae). PloS one, 13 (8). e0202905-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0202905

Manna, S; Ortika, BD; Dunne, EM; Holt, KE; Kama, M; Russell, FM; Hinds, J; Satzke, C; (2018) A novel genetic variant of Streptococcus pneumoniae serotype 11A discovered in Fiji. CLINICAL MICROBIOLOGY AND INFECTION, 24 (4). 428.e1-428.e7. ISSN 1198-743X DOI: https://doi.org/10.1016/j.cmi.2017.06.031

Marks, Michael; Fookes, Maria; Wagner, Josef; Ghinai, Rosanna; Sokana, Oliver; Sarkodie, Yaw-Adu; Solomon, Anthony W; Mabey, David CW; Thomson, Nicholas R; (2018) Direct Whole-Genome Sequencing of Cutaneous Strains of Haemophilus ducreyi. Emerging infectious diseases, 24 (4). pp. 786-789. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2404.171726

Marlais, Tegwen; Bhattacharyya, Tapan; Singh, Om Prakash; Mertens, Pascal; Gilleman, Quentin; Thunissen, Caroline; Hinckel, Bruno C Bremer; Pearson, Callum; Gardner, Bathsheba L; Airs, Stephanie; +13 more... de la Roche, Marianne; Hayes, Kiera; Hafezi, Hannah; Falconar, Andrew K; Eisa, Osama; Saad, Alfarazdeg; Khanal, Basudha; Bhattarai, Narayan Raj; Rijal, Suman; Boelaert, Marleen; El-Safi, Sayda; Sundar, Shyam; Miles, Michael A; (2018) Visceral Leishmaniasis IgG1 Rapid Monitoring of Cure vs. Relapse, and Potential for Diagnosis of Post Kala-Azar Dermal Leishmaniasis. Frontiers in Cellular and Infection Microbiology, 8. 427-. DOI: https://doi.org/10.3389/fcimb.2018.00427

Marshall, Laura E; Nelson, Michelle; Davies, Carwyn H; Whelan, Adam O; Jenner, Dominic C; Moule, Madeleine G; Denman, Carmen; Cuccui, Jon; Atkins, Timothy P; Wren, Brendan W; +1 more... Prior, Joann L; (2018) An O-Antigen Glycoconjugate Vaccine Produced Using Protein Glycan Coupling Technology Is Protective in an Inhalational Rat Model of Tularemia. JOURNAL OF IMMUNOLOGY RESEARCH, 2018. 8087916-. ISSN 2314-8861 DOI: https://doi.org/10.1155/2018/8087916

Martí Coma-Cros, Elisabet; Biosca, Arnau; Marques, Joana; Carol, Laura; Urbán, Patricia; Berenguer, Diana; Riera, Maria Cristina; Delves, Michael; Sinden, Robert E; Valle-Delgado, Juan José; +9 more... Spanos, Lefteris; Siden-Kiamos, Inga; Pérez, Paula; Paaijmans, Krijn; Rottmann, Matthias; Manfredi, Amedea; Ferruti, Paolo; Ranucci, Elisabetta; Fernàndez-Busquets, Xavier; (2018) Polyamidoamine Nanoparticles for the Oral Administration of Antimalarial Drugs. Pharmaceutics, 10 (4). p. 225. DOI: https://doi.org/10.3390/pharmaceutics10040225

Mather, Alison E; Phuong, Tu Le Thi; Gao, Yunfeng; Clare, Simon; Mukhopadhyay, Subhankar; Goulding, David A; Hoang, Nhu Tran Do; Tuyen, Ha Thanh; Lan, Nguyen Phu Huong; Thompson, Corinne N; +22 more... Trang, Nguyen Hoang Thu; Carrique-Mas, Juan; Tue, Ngo Tri; Campbell, James I; Rabaa, Maia A; Thanh, Duy Pham; Harcourt, Katherine; Hoa, Ngo Thi; Trung, Nguyen Vinh; Schultsz, Constance; Perron, Gabriel G; Coia, John E; Brown, Derek J; Okoro, Chinyere; Parkhill, Julian; Thomson, Nicholas R; Chau, Nguyen Van Vinh; Thwaites, Guy E; Maskell, Duncan J; Dougan, Gordon; Kenney, Linda J; Baker, Stephen; (2018) New Variant of Multidrug-Resistant Salmonella enterica Serovar Typhimurium Associated with Invasive Disease in Immunocompromised Patients in Vietnam. MBIO, 9 (5). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.01056-18

McCarthy, Alex J; Stabler, Richard A; Taylor, Peter W; (2018) Genome-Wide Identification by Transposon Insertion Sequencing of Escherichia coli K1 Genes Essential for In Vitro Growth, Gastrointestinal Colonizing Capacity, and Survival in Serum. Journal of bacteriology, 200 (7). ISSN 0021-9193 DOI: https://doi.org/10.1128/JB.00698-17

McNeill, Eileen; Stylianou, Elena; Crabtree, Mark J; Harrington-Kandt, Rachel; Kolb, Anna-Lena; Diotallevi, Marina; Hale, Ashley B; Bettencourt, Paulo; Tanner, Rachel; O'Shea, Matthew K; +7 more... Matsumiya, Magali; Lockstone, Helen; Müller, Julius; Fletcher, Helen A; Greaves, David R; McShane, Helen; Channon, Keith M; (2018) Regulation of mycobacterial infection by macrophage Gch1 and tetrahydrobiopterin. NATURE COMMUNICATIONS, 9 (1). 5409-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-07714-9

McNerney, Ruth; Zignol, Matteo; Clark, Taane G; (2018) Use of whole genome sequencing in surveillance of drug resistant tuberculosis. Expert review of anti-infective therapy, 16 (5). pp. 433-442. ISSN 1478-7210 DOI: https://doi.org/10.1080/14787210.2018.1472577 Full text not available from this repository.

Meerstein-Kessel, Lisette; Andolina, Chiara; Carrio, Elvira; Mahamar, Almahamoudou; Sawa, Patrick; Diawara, Halimatou; van de Vegte-Bolmer, Marga; Stone, Will; Collins, Katharine A; Schneider, Petra; +6 more... Dicko, Alassane; Drakeley, Chris; Felger, Ingrid; Voss, Till; Lanke, Kjerstin; Bousema, Teun; (2018) A multiplex assay for the sensitive detection and quantification of male and female Plasmodium falciparum gametocytes. Malaria journal, 17 (1). 441-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-018-2584-y

Meerstein-Kessel, Lisette; van der Lee, Robin; Stone, Will; Lanke, Kjerstin; Baker, David A; Alano, Pietro; Silvestrini, Francesco; Janse, Chris J; Khan, Shahid M; van de Vegte-Bolmer, Marga; +10 more... Graumans, Wouter; Siebelink-Stoter, Rianne; Kooij, Taco WA; Marti, Matthias; Drakeley, Chris; Campo, Joseph J; van Dam, Teunis JP; Sauerwein, Robert; Bousema, Teun; Huynen, Martijn A; (2018) Probabilistic data integration identifies reliable gametocyte-specific proteins and transcripts in malaria parasites. Scientific reports, 8 (1). 410-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-18840-7

Mollett, Guy; Bremer Hinckel, Bruno C; Bhattacharyya, Tapan; Marlais, Tegwen; Singh, Om Prakash; Mertens, Pascal; Falconar, Andrew K; El-Safi, Sayda; Sundar, Shyam; Miles, Michael A; (2018) Detection of Immunoglobulin G1 Against rK39 Improves Monitoring of Treatment Outcomes in Visceral Leishmaniasis. Clinical Infectious Diseases, 69 (7). pp. 1130-1135. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy1062

Mooney, Jason P; Barry, Aissata; Gonçalves, Bronner P; Tiono, Alfred B; Awandu, Shehu S; Grignard, Lynn; Drakeley, Chris J; Bottomley, Christian; Bousema, Teun; Riley, Eleanor M; (2018) Haemolysis and haem oxygenase-1 induction during persistent "asymptomatic" malaria infection in Burkinabé children. Malaria journal, 17 (1). 253-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-018-2402-6

Moore, Sandra; Dongdem, Anthony Zunuo; Opare, David; Cottavoz, Paul; Fookes, Maria; Sadji, Adodo Yao; Dzotsi, Emmanuel; Dogbe, Michael; Jeddi, Fakhri; Bidjada, Bawimodom; +12 more... Piarroux, Martine; Valentin, Ouyi Tante; Glèlè, Clément Kakaï; Rebaudet, Stanislas; Sow, Amy Gassama; Constantin de Magny, Guillaume; Koivogui, Lamine; Dunoyer, Jessica; Bellet, Francois; Garnotel, Eric; Thomson, Nicholas; Piarroux, Renaud; (2018) Dynamics of cholera epidemics from Benin to Mauritania. PLoS neglected tropical diseases, 12 (4). e0006379-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006379

Mostowy, Rafał J; Holt, Kathryn E; (2018) Diversity-Generating Machines: Genetics of Bacterial Sugar-Coating. Trends in microbiology, 26 (12). pp. 1008-1021. ISSN 0966-842X DOI: https://doi.org/10.1016/j.tim.2018.06.006

Muh, Fauzi; Lee, Seong-Kyun; Hoque, Mohammad Rafiul; Han, Jin-Hee; Park, Ji-Hoon; Firdaus, Egy Rahman; Moon, Robert W; Lau, Yee Ling; Han, Eun-Taek; (2018) In vitro invasion inhibition assay using antibodies against Plasmodium knowlesi Duffy binding protein alpha and apical membrane antigen protein 1 in human erythrocyte-adapted P. knowlesi A1-H.1 strain. Malaria journal, 17 (1). 272-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-018-2420-4

Mwesigwa, Julia; Achan, Jane; Affara, Muna; Wathuo, Miriam; Worwui, Archibald; Mohammed, Nuredin Ibrahim; Kanuteh, Fatoumatta; Prom, Aurelia; Dierickx, Susan; di Tanna, Gian Luca; +5 more... Nwakanma, Davis; Bousema, Teun; Drakeley, Chris; Van Geertruyden, Jean Pierre; D'Alessandro, Umberto; (2018) Mass Drug Administration With Dihydroartemisinin-piperaquine and Malaria Transmission Dynamics in The Gambia: A Prospective Cohort Study. Clinical infectious diseases, 69 (2). pp. 278-286. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy870

Nabarro, Laura EB; Nolder, Debbie; Broderick, Claire; Nadjm, Behzad; Smith, Valerie; Blaze, Marie; Checkley, Anna M; Chiodini, Peter L; Sutherland, Colin J; Whitty, Christopher JM; (2018) Geographical and temporal trends and seasonal relapse in Plasmodium ovale spp. and Plasmodium malariae infections imported to the UK between 1987 and 2015. BMC MEDICINE, 16 (1). 218-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-018-1204-6

Nacul, Luis Carlos; Mudie, Kathleen; Kingdon, Caroline C; Clark, Taane G; Lacerda, Eliana Mattos; (2018) Hand Grip Strength as a Clinical Biomarker for ME/CFS and Disease Severity. Frontiers in Neurology, 9 (NOV). 992-. DOI: https://doi.org/10.3389/fneur.2018.00992

Ndila, Carolyne M; Uyoga, Sophie; Macharia, Alexander W; Nyutu, Gideon; Peshu, Norbert; Ojal, John; Shebe, Mohammed; Awuondo, Kennedy O; Mturi, Neema; Tsofa, Benjamin; +15 more... Sepúlveda, Nuno; Clark, Taane G; Band, Gavin; Clarke, Geraldine; Rowlands, Kate; Hubbart, Christina; Jeffreys, Anna; Kariuki, Silvia; Marsh, Kevin; Mackinnon, Margaret; Maitland, Kathryn; Kwiatkowski, Dominic P; Rockett, Kirk A; Williams, Thomas N; MalariaGEN Consortium; (2018) Human candidate gene polymorphisms and risk of severe malaria in children in Kilifi, Kenya: a case-control association study. The Lancet Haematology, 5 (8). e333-e345. ISSN 2352-3026 DOI: https://doi.org/10.1016/S2352-3026(18)30107-8

Negera, Edessa; Tilahun, Melaku; Bobosha, Kidist; Lambert, Saba M; Walker, Stephen L; Spencer, John S; Aseffa, Abraham; Dockrell, Hazel M; Lockwood, Diana N; (2018) The effects of prednisolone treatment on serological responses and lipid profiles in Ethiopian leprosy patients with Erythema Nodosum Leprosum reactions. PLoS neglected tropical diseases, 12 (12). e0007035-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0007035

Negera, Edessa; Walker, Stephen L; Bobosha, Kidist; Bekele, Yonas; Endale, Birtukan; Tarekegn, Azeb; Abebe, Markos; Aseffa, Abraham; Dockrell, Hazel M; Lockwood, Diana N; (2018) The Effects of Prednisolone Treatment on Cytokine Expression in Patients with Erythema Nodosum Leprosum Reactions. Frontiers in immunology, 9 (FEB). 189-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2018.00189

Negera, Edessa; Walker, Stephen L; Lema, Tsehaynesh; Aseffa, Abraham; Lockwood, Diana N; Dockrell, Hazel M; (2018) Complement C1q expression in Erythema nodosum leprosum. PLoS neglected tropical diseases, 12 (3). e0006321-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006321

Nigro, Steven J; Wick, Ryan; Holt, Kathryn E; Hall, Ruth M; (2018) Complete Genome Sequence of WM99c, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 2 (GC2) Strain Representing an Australian GC2 Lineage. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 7 (22). ISSN 2576-098X DOI: https://doi.org/10.1128/MRA.01199-18

Nsanzabana, Christian; Ariey, Frederic; Beck, Hans-Peter; Ding, Xavier C; Kamau, Edwin; Krishna, Sanjeev; Legrand, Eric; Lucchi, Naomi; Miotto, Olivo; Nag, Sidsel; +7 more... Noedl, Harald; Roper, Cally; Rosenthal, Philip J; Schallig, Henk DFH; Taylor, Steve M; Volkman, Sarah K; Gonzalez, Iveth J; (2018) Molecular assays for antimalarial drug resistance surveillance: A target product profile. PloS one, 13 (9). e0204347-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0204347

O'Shea, Matthew K; Fletcher, Thomas E; Muller, Julius; Tanner, Rachel; Matsumiya, Magali; Bailey, J Wendi; Jones, Jayne; Smith, Steven G; Koh, Gavin; Horsnell, William G; +5 more... Beeching, Nicholas J; Dunbar, James; Wilson, Duncan; Cunningham, Adam F; McShane, Helen; (2018) Human Hookworm Infection Enhances Mycobacterial Growth Inhibition and Associates With Reduced Risk of Tuberculosis Infection. FRONTIERS IN IMMUNOLOGY, 9. 2893-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2018.02893

O'Shea, Matthew K; Tanner, Rachel; Müller, Julius; Harris, Stephanie A; Wright, Danny; Stockdale, Lisa; Stylianou, Elena; Satti, Iman; Smith, Steven G; Dunbar, James; +4 more... Fletcher, Thomas E; Dedicoat, Martin; Cunningham, Adam F; McShane, Helen; (2018) Immunological correlates of mycobacterial growth inhibition describe a spectrum of tuberculosis infection. Scientific reports, 8 (1). 14480-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-32755-x

Okell, Lucy C; Reiter, Lisa Malene; Ebbe, Lene Sandø; Baraka, Vito; Bisanzio, Donal; Watson, Oliver J; Bennett, Adam; Verity, Robert; Gething, Peter; Roper, Cally; +1 more... Alifrangis, Michael; (2018) Emerging implications of policies on malaria treatment: genetic changes in the Pfmdr-1 gene affecting susceptibility to artemether-lumefantrine and artesunate-amodiaquine in Africa. BMJ global health, 3 (5). e000999-. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2018-000999

Olmo, Francisco; Costa, Fernanda C; Mann, Gurdip Singh; Taylor, Martin C; Kelly, John M; (2018) Optimising genetic transformation of Trypanosoma cruzi using hydroxyurea-induced cell-cycle synchronisation. Molecular and biochemical parasitology, 226. pp. 34-36. ISSN 0166-6851 DOI: https://doi.org/10.1016/j.molbiopara.2018.07.002

Orsborne, James; Furuya-Kanamori, Luis; Jeffries, Claire L; Kristan, Mojca; Mohammed, Abdul Rahim; Afrane, Yaw A; O'Reilly, Kathleen; Massad, Eduardo; Drakeley, Chris; Walker, Thomas; +1 more... Yakob, Laith; (2018) Using the human blood index to investigate host biting plasticity: a systematic review and meta-regression of the three major African malaria vectors. Malaria journal, 17 (1). 479-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-018-2632-7

Otto, Thomas D; Böhme, Ulrike; Sanders, Mandy; Reid, Adam; Bruske, Ellen I; Duffy, Craig W; Bull, Pete C; Pearson, Richard D; Abdi, Abdirahman; Dimonte, Sandra; +14 more... Stewart, Lindsay B; Campino, Susana; Kekre, Mihir; Hamilton, William L; Claessens, Antoine; Volkman, Sarah K; Ndiaye, Daouda; Amambua-Ngwa, Alfred; Diakite, Mahamadou; Fairhurst, Rick M; Conway, David J; Franck, Matthias; Newbold, Chris I; Berriman, Matt; (2018) Long read assemblies of geographically dispersed Plasmodium falciparum isolates reveal highly structured subtelomeres. Wellcome open research, 3. 52-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.14571.1

Page, Andrew J; Wailan, Alexander; Shao, Yan; Judge, Kim; Dougan, Gordon; Klemm, Elizabeth J; Thomson, Nicholas R; Keane, Jacqueline A; (2018) PlasmidTron: assembling the cause of phenotypes and genotypes from NGS data. MICROBIAL GENOMICS, 4 (3). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000164

Palittapongarnpim, Prasit; Ajawatanawong, Pravech; Viratyosin, Wasna; Smittipat, Nat; Disratthakit, Areeya; Mahasirimongkol, Surakameth; Yanai, Hideki; Yamada, Norio; Nedsuwan, Supalert; Imasanguan, Worarat; +13 more... Kantipong, Pacharee; Chaiyasirinroje, Boonchai; Wongyai, Jiraporn; Toyo-Oka, Licht; Phelan, Jody; Parkhill, Julian; Clark, Taane G; Hibberd, Martin L; Ruengchai, Wuthiwat; Palittapongarnpim, Panawun; Juthayothin, Tada; Tongsima, Sissades; Tokunaga, Katsushi; (2018) Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. Scientific reports, 8 (1). 11597-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-29986-3

Park, Se Eun; Pham, Duy Thanh; Boinett, Christine; Wong, Vanessa K; Pak, Gi Deok; Panzner, Ursula; Espinoza, Ligia Maria Cruz; von Kalckreuth, Vera; Im, Justin; Schütt-Gerowitt, Heidi; +60 more... Crump, John A; Breiman, Robert F; Adu-Sarkodie, Yaw; Owusu-Dabo, Ellis; Rakotozandrindrainy, Raphaël; Soura, Abdramane Bassiahi; Aseffa, Abraham; Gasmelseed, Nagla; Keddy, Karen H; May, Jürgen; Sow, Amy Gassama; Aaby, Peter; Biggs, Holly M; Hertz, Julian T; Montgomery, Joel M; Cosmas, Leonard; Olack, Beatrice; Fields, Barry; Sarpong, Nimako; Razafindrabe, Tsiriniaina Jean Luco; Raminosoa, Tiana Mirana; Kabore, Leon Parfait; Sampo, Emmanuel; Teferi, Mekonnen; Yeshitela, Biruk; El Tayeb, Muna Ahmed; Sooka, Arvinda; Meyer, Christian G; Krumkamp, Ralf; Dekker, Denise Myriam; Jaeger, Anna; Poppert, Sven; Tall, Adama; Niang, Aissatou; Bjerregaard-Andersen, Morten; Løfberg, Sandra Valborg; Seo, Hye Jin; Jeon, Hyon Jin; Deerin, Jessica Fung; Park, Jinkyung; Konings, Frank; Ali, Mohammad; Clemens, John D; Hughes, Peter; Sendagala, Juliet Nsimire; Vudriko, Tobias; Downing, Robert; Ikumapayi, Usman N; Mackenzie, Grant A; Obaro, Stephen; Argimon, Silvia; Aanensen, David M; Page, Andrew; Keane, Jacqueline A; Duchene, Sebastian; Dyson, Zoe; Holt, Kathryn E; Dougan, Gordon; Marks, Florian; Baker, Stephen; (2018) The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa. Nature communications, 9 (1). 5094-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-07370-z

Passmore, Ian J; Letertre, Marine PM; Preston, Mark D; Bianconi, Irene; Harrison, Mark A; Nasher, Fauzy; Kaur, Harparkash; Hong, Huynh A; Baines, Simon D; Cutting, Simon M; +3 more... Swann, Jonathan R; Wren, Brendan W; Dawson, Lisa F; (2018) Para-cresol production by Clostridium difficile affects microbial diversity and membrane integrity of Gram-negative bacteria. PLoS pathogens, 14 (9). e1007191-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1007191

Pecenin, Mateus Fila; Borges-Pereira, Lucas; Levano-Garcia, Julio; Budu, Alexandre; Alves, Eduardo; Mikoshiba, Katsuhiko; Thomas, Andrew; Garcia, Celia RS; (2018) Blocking IP3 signal transduction pathways inhibits melatonin-induced Ca2+ signals and impairs P. falciparum development and proliferation in erythrocytes. Cell Calcium, 72. pp. 81-90. ISSN 0143-4160 DOI: https://doi.org/10.1016/j.ceca.2018.02.004

Perdigão, João; Silva, Carla; Diniz, Jaciara; Pereira, Catarina; Machado, Diana; Ramos, Jorge; Silva, Hugo; Abilleira, Fernanda; Brum, Clarice; Reis, Ana J; +28 more... Macedo, Maíra; Scaini, João L; Silva, Ana B; Esteves, Leonardo; Macedo, Rita; Maltez, Fernando; Clemente, Sofia; Coelho, Elizabeth; Viegas, Sofia; Rabna, Paulo; Rodrigues, Amabélia; Taveira, Nuno; Jordao, Luísa; Kritski, Afrânio; Lapa E Silva, José R; Mokrousov, Igor; Couvin, David; Rastogi, Nalin; Couto, Isabel; Pain, Arnab; McNerney, Ruth; Clark, Taane G; von Groll, Andrea; Dalla-Costa, Elis R; Rossetti, Maria Lúcia; Silva, Pedro EA; Viveiros, Miguel; Portugal, Isabel; (2018) Clonal expansion across the seas as seen through CPLP-TB database: A joint effort in cataloguing Mycobacterium tuberculosis genetic diversity in Portuguese-speaking countries. Infection, genetics and evolution, 72. pp. 44-58. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2018.03.011

Perrin, Abigail J; Collins, Christine R; Russell, Matthew RG; Collinson, Lucy M; Baker, David A; Blackman, Michael J; (2018) The Actinomyosin Motor Drives Malaria Parasite Red Blood Cell Invasion but Not Egress. mBio, 9 (4). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.00905-18

Pettersson, John H-O; Bohlin, Jon; Dupont-Rouzeyrol, Myrielle; Brynildsrud, Ola B; Alfsnes, Kristian; Cao-Lormeau, Van-Mai; Gaunt, Michael W; Falconar, Andrew K; de Lamballerie, Xavier; Eldholm, Vegard; +2 more... Musso, Didier; Gould, Ernest A; (2018) Re-visiting the evolution, dispersal and epidemiology of Zika virus in Asia. Emerging microbes & infections, 7 (1). 79-. ISSN 2222-1751 DOI: https://doi.org/10.1038/s41426-018-0082-5

Pettersson, John H-O; Eldholm, Vegard; Seligman, Stephen J; Lundkvist, Åke; Falconar, Andrew K; Gaunt, Michael W; Musso, Didier; Nougairède, Antoine; Charrel, Remi; Gould, Ernest A; +1 more... de Lamballerie, Xavier; (2018) Erratum for Pettersson et al., "How Did Zika Virus Emerge in the Pacific Islands and Latin America?". mBio, 9 (2). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.00386-18

Pfanzelter, Julia; Mostowy, Serge; Way, Michael; (2018) Septins suppress the release of vaccinia virus from infected cells. The Journal of cell biology, 217 (8). pp. 2911-2929. ISSN 0021-9525 DOI: https://doi.org/10.1083/jcb.201708091

Pham, Thu Hang; Peter, Jonathan; Mello, Fernanda CQ; Parraga, Tommy; Lan, Nguyen Thi Ngoc; Nabeta, Pamela; Valli, Eloise; Caceres, Tatiana; Dheda, Keertan; Dorman, Susan E; +3 more... Hillemann, Doris; Gray, Christen M; Perkins, Mark D; (2018) Performance of the TB-LAMP diagnostic assay in reference laboratories: Results from a multicentre study. International journal of infectious diseases, 68. pp. 44-49. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2018.01.005

Phelan, Jody; de Sessions, Paola Florez; Tientcheu, Leopold; Perdigao, Joao; Machado, Diana; Hasan, Rumina; Hasan, Zahra; Bergval, Indra L; Anthony, Richard; McNerney, Ruth; +6 more... Antonio, Martin; Portugal, Isabel; Viveiros, Miguel; Campino, Susana; Hibberd, Martin L; Clark, Taane G; (2018) Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally. Scientific reports, 8 (1). 160-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-18188-y

Piccinali, Romina V; Gaunt, Michael W; Gürtler, Ricardo E; (2018) A Microsatellite-Based Analysis of House Infestation With Triatoma Infestans (Hemiptera: Reduviidae) After Insecticide Spraying in the Argentine Chaco. J Med Entomol, 55 (3). pp. 609-619. ISSN 1938-2928 DOI: https://doi.org/10.1093/jme/tjx256 Full text not available from this repository.

Pierrot, Christine; Zhang, Xiguang; Zanghi, Gigliola; Fréville, Aline; Rebollo, Angelita; Khalife, Jamal; (2018) Peptides derived from Plasmodium falciparum leucine-rich repeat 1 bind to serine/threonine phosphatase type 1 and inhibit parasite growth in vitro. DRUG DESIGN DEVELOPMENT AND THERAPY, 12. pp. 85-88. ISSN 1177-8881 DOI: https://doi.org/10.2147/DDDT.S153095

Pinweha, Peechanika; Pumirat, Pornpan; Cuccui, Jon; Jitprasutwit, Niramol; Muangsombut, Veerachat; Srinon, Varintip; Boonyuen, Usa; Thiennimitr, Parameth; Vattanaviboon, Paiboon; Cia, Felipe; +4 more... Willcocks, Sam; Bancroft, Gregory J; Wren, Brendan W; Korbsrisate, Sunee; (2018) Inactivation of bpsl1039-1040 ATP-binding cassette transporter reduces intracellular survival in macrophages, biofilm formation and virulence in the murine model of Burkholderia pseudomallei infection. PloS one, 13 (5). e0196202-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0196202

Portelli, Stephanie; Phelan, Jody E; Ascher, David B; Clark, Taane G; Furnham, Nicholas; (2018) Understanding molecular consequences of putative drug resistant mutations in Mycobacterium tuberculosis. Scientific reports, 8 (1). 15356-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-33370-6

Prentice, Sarah; Kamushaaga, Zephyrian; Nash, Stephen B; Elliott, Alison M; Dockrell, Hazel M; Cose, Stephen; (2018) Post-immunization leucocytosis and its implications for the management of febrile infants. Vaccine, 36 (20). pp. 2870-2875. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.03.026

Quinnell, Rupert J; Soremekun, Seyi; Bates, Paul A; Rogers, Matthew E; Garcez, Lourdes M; Courtenay, Orin; (2018) Antibody response to sand fly saliva is a marker of transmission intensity but not disease progression in dogs naturally infected with Leishmania infantum. Parasites & vectors, 11 (1). 7-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-017-2587-5

Ravenhall, Matt; Campino, Susana; Sepúlveda, Nuno; Manjurano, Alphaxard; Nadjm, Behzad; Mtove, George; Wangai, Hannah; Maxwell, Caroline; Olomi, Raimos; Reyburn, Hugh; +4 more... Drakeley, Christopher J; Riley, Eleanor M; Clark, Taane G; MalariaGEN; (2018) Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania. PLoS genetics, 14 (1). e1007172-. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1007172

Rebollo-Ramirez, Sonia; Krokowski, Sina; Lobato-Márquez, Damian; Thomson, Michael; Pennisi, Ivana; Mostowy, Serge; Larrouy-Maumus, Gerald; (2018) Intact Cell Lipidomics Reveal Changes to the Ratio of Cardiolipins to Phosphatidylinositols in Response to Kanamycin in HeLa and Primary Cells. Chemical research in toxicology, 31 (8). pp. 688-696. ISSN 0893-228X DOI: https://doi.org/10.1021/acs.chemrestox.8b00038

Reglinski, Mark; Ercoli, Giuseppe; Plumptre, Charlie; Kay, Emily; Petersen, Fernanda C; Paton, James C; Wren, Brendan W; Brown, Jeremy S; (2018) A recombinant conjugated pneumococcal vaccine that protects against murine infections with a similar efficacy to Prevnar-13. NPJ vaccines, 3 (1). 53-. ISSN 2059-0105 DOI: https://doi.org/10.1038/s41541-018-0090-4

Rew, Vanessa; Mook, Piers; Trienekens, Suzan; Baker, Kate S; Dallman, Timothy J; Jenkins, Claire; Crook, Paul D; Thomson, Nicholas R; (2018) Whole-genome sequencing revealed concurrent outbreaks of shigellosis in the English Orthodox Jewish Community caused by multiple importations of Shigella sonnei from Israel. MICROBIAL GENOMICS, 4 (3). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000170

Rhodes, Sophie J; Guedj, Jeremie; Fletcher, Helen A; Lindenstrøm, Thomas; Scriba, Thomas J; Evans, Thomas G; Knight, Gwenan M; White, Richard G; (2018) Using vaccine Immunostimulation/Immunodynamic modelling methods to inform vaccine dose decision-making. NPJ Vaccines, 3 (1). 36-. ISSN 2059-0105 DOI: https://doi.org/10.1038/s41541-018-0075-3

Richards, Emma; Bouché, Laura; Panico, Maria; Arbeloa, Ana; Vinogradov, Evgeny; Morris, Howard; Wren, Brendan; Logan, Susan M; Dell, Anne; Fairweather, Neil F; (2018) The S-layer protein of a Clostridium difficile SLCT-11 strain displays a complex glycan required for normal cell growth and morphology. The Journal of biological chemistry, 293 (47). pp. 18123-18137. ISSN 0021-9258 DOI: https://doi.org/10.1074/jbc.RA118.004530

Robinson, Ailie; Busula, Annette O; Voets, Mirjam A; Beshir, Khalid B; Caulfield, John C; Powers, Stephen J; Verhulst, Niels O; Winskill, Peter; Muwanguzi, Julian; Birkett, Michael A; +10 more... Smallegange, Renate C; Masiga, Daniel K; Mukabana, W Richard; Sauerwein, Robert W; Sutherland, Colin J; Bousema, Teun; Pickett, John A; Takken, Willem; Logan, James G; de Boer, Jetske G; (2018) Plasmodium-associated changes in human odor attract mosquitoes. Proceedings of the National Academy of Sciences of the United States of America, 115 (18). E4209-E4218. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1721610115

Rodriguez-Barraquer, Isabel; Arinaitwe, Emmanuel; Jagannathan, Prasanna; Kamya, Moses R; Rosenthal, Phillip J; Rek, John; Dorsey, Grant; Nankabirwa, Joaniter; Staedke, Sarah G; Kilama, Maxwell; +4 more... Drakeley, Chris; Ssewanyana, Isaac; Smith, David L; Greenhouse, Bryan; (2018) Quantification of anti-parasite and anti-disease immunity to malaria as a function of age and exposure. eLife, 7. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.35832

Roman, Fabiola; Iñiguez, Alena M; Yeo, Matthew; Jansen, Ana M; (2018) Multilocus sequence typing: genetic diversity in Trypanosoma cruzi I (TcI) isolates from Brazilian didelphids. Parasites & vectors, 11 (1). 107-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-018-2696-9

Roman, Fabiola; das Chagas Xavier, Samanta; Messenger, Louisa A; Pavan, Márcio G; Miles, Michael A; Jansen, Ana María; Yeo, Matthew; (2018) Dissecting the phyloepidemiology of Trypanosoma cruzi I (TcI) in Brazil by the use of high resolution genetic markers. PLoS neglected tropical diseases, 12 (5). e0006466-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006466

Saeed, Sadia; Tremp, Annie Z; Dessens, Johannes T; (2018) The Plasmodium LAP complex affects crystalloid biogenesis and oocyst cell division. International journal for parasitology, 48 (14). pp. 1073-1078. ISSN 0020-7519 DOI: https://doi.org/10.1016/j.ijpara.2018.09.002

Sallah, Neneh; Palser, Anne L; Watson, Simon J; Labo, Nazzarena; Asiki, Gershim; Marshall, Vickie; Newton, Robert; Whitby, Denise; Kellam, Paul; Barroso, Inês; (2018) Genome-Wide Sequence Analysis of Kaposi Sarcoma-Associated Herpesvirus Shows Diversification Driven by Recombination. The Journal of infectious diseases, 218 (11). pp. 1700-1710. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiy427

Sancho-Shimizu, Vanessa; Mostowy, Serge; (2018) Bacterial Autophagy: How to Take a Complement. Cell host & microbe, 23 (5). pp. 580-582. ISSN 1931-3128 DOI: https://doi.org/10.1016/j.chom.2018.04.010 Full text not available from this repository.

Sandmann, Frank G; Shallcross, Laura; Adams, Natalie; Allen, David J; Coen, Pietro G; Jeanes, Annette; Kozlakidis, Zisis; Larkin, Lesley; Wurie, Fatima; Robotham, Julie V; +2 more... Jit, Mark; Deeny, Sarah R; (2018) Estimating the Hospital Burden of Norovirus-Associated Gastroenteritis in England and Its Opportunity Costs for Nonadmitted Patients. Clinical infectious diseases, 67 (5). pp. 693-700. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy167

Sawyer, Elizabeth B; Grabowska, Anna D; Cortes, Teresa; (2018) Translational regulation in mycobacteria and its implications for pathogenicity. Nucleic acids research, 46 (14). pp. 6950-6961. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gky574

Seipone, Ikanyeng D; Singh, Ravesh; Patel, Vinod B; Singh, Avashna; Gordon, Michelle L; Muema, Daniel M; Dheda, Keertan; Ndung'u, Thumbi; (2018) Tuberculous meningitis is associated with higher cerebrospinal HIV-1 viral loads compared to other HIV-1-associated meningitides. PLOS ONE, 13 (2). e0192060-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0192060

Sepúlveda, Nuno; Phelan, Jody; Diez-Benavente, Ernest; Campino, Susana; Clark, Taane G; Hopkins, Heidi; Sutherland, Colin; Drakeley, Chris J; Beshir, Khalid B; (2018) Global analysis of Plasmodium falciparum histidine-rich protein-2 (pfhrp2) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. Infection, genetics and evolution, 62. pp. 211-219. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2018.04.039

Sharma, Surendra Kumar; Mohan, Alladi; Singh, Achintya Dinesh; Mishra, Hridesh; Jhanjee, Sonali; Pandey, Ravindra Mohan; Singh, Binit Kumar; Sharma, Rohini; Pallipamu, Prakash Babu; Pai, Madhukar; +1 more... Dheda, Keertan; (2018) Impact of nicotine replacement therapy as an adjunct to anti-tuberculosis treatment and behaviour change counselling in newly diagnosed pulmonary tuberculosis patients: an open-label, randomised controlled trial. SCIENTIFIC REPORTS, 8 (1). 8828-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-26990-5

Shitaye, Getasew; Gadisa, Endalamaw; Grignard, Lynn; Shumie, Girma; Chali, Wakweya; Menberu, Temesgen; Belachew, Mulualem; Tegegn, Getaneh; Challi, Sagni; Curry, Jonathan; +9 more... Mahey, Laleta; Hailu, Tsegaye; Mamo, Hassen; Menon, Menakath; Balcha, Taye; Aseffa, Abraham; Drakeley, Chris; Bousema, Teun; Tadesse, Fitsum G; (2018) Low and heterogeneous prevalence of glucose-6-phosphate dehydrogenase deficiency in different settings in Ethiopia using phenotyping and genotyping approaches. Malaria journal, 17 (1). 281-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-018-2437-8

Sibanda, Nompilo; McKenna, Aaron; Richmond, Anne; Ricke, Steven C; Callaway, Todd; Stratakos, Alexandros Ch; Gundogdu, Ozan; Corcionivoschi, Nicolae; (2018) A Review of the Effect of Management Practices on Campylobacter Prevalence in Poultry Farms. Frontiers in microbiology, 9 (AUG). 2002-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2018.02002

Sima, Filip; Stratakos, Alexandros Ch; Ward, Patrick; Linton, Mark; Kelly, Carmel; Pinkerton, Laurette; Stef, Lavinia; Gundogdu, Ozan; Lazar, Veronica; Corcionivoschi, Nicolae; (2018) A Novel Natural Antimicrobial Can Reduce the in vitro and in vivo Pathogenicity of T6SS Positive Campylobacter jejuni and Campylobacter coli Chicken Isolates. Frontiers in microbiology, 9 (SEP). 2139-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2018.02139

Skibinski, David AG; Jones, Leigh Ann; Zhu, Yuan O; Xue, Lin Wu; Au, Bijin; Lee, Bernett; Naim, Ahmad Nazri Mohamed; Lee, Audrey; Kaliaperumal, Nivashini; Low, Jenny GH; +11 more... Lee, Lawrence S; Poidinger, Michael; Saudan, Philippe; Bachmann, Martin; Ooi, Eng Eong; Hanson, Brendon J; Novotny-Diermayr, Veronica; Matter, Alex; Fairhurst, Anna-Marie; Hibberd, Martin L; Connolly, John E; (2018) Induction of Human T-cell and Cytokine Responses Following Vaccination with a Novel Influenza Vaccine. Scientific Reports, 8 (1). 18007-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-36703-7

Skilton, Rachel J; Wang, Yibing; O'Neill, Colette; Filardo, Simone; Marsh, Peter; Bénard, Angèle; Thomson, Nicholas R; Ramsey, Kyle H; Clarke, Ian N; (2018) The Chlamydia muridarum plasmid revisited : new insights into growth kinetics. Wellcome open research, 3. 25-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.13905.1

Sobkowiak, Benjamin; Glynn, Judith R; Houben, Rein MGJ; Mallard, Kim; Phelan, Jody E; Guerra-Assunção, José Afonso; Banda, Louis; Mzembe, Themba; Viveiros, Miguel; McNerney, Ruth; +3 more... Parkhill, Julian; Crampin, Amelia C; Clark, Taane G; (2018) Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. BMC genomics, 19 (1). 613-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-018-4988-z

Soetedjo, Nanny NM; McAllister, Susan M; Ugarte-Gil, Cesar; Firanescu, Adela G; Ronacher, Katharina; Alisjahbana, Bachti; Costache, Anca L; Zubiate, Carlos; Malherbe, Stephanus T; Koesoemadinata, Raspati C; +15 more... Laurence, Yoko V; Pearson, Fiona; Kerry-Barnard, Sarah; Ruslami, Rovina; Moore, David AJ; Ioana, Mihai; Kleynhans, Leanie; Permana, Hikmat; Hill, Philip C; Mota, Maria; Walzl, Gerhard; Dockrell, Hazel M; Critchley, Julia A; van Crevel, Reinout; TANDEM Consortium; (2018) Disease characteristics and treatment of patients with diabetes mellitus attending government health services in Indonesia, Peru, Romania and South Africa. Tropical medicine & international health, 23 (10). pp. 1118-1128. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.13137

Soremekun, Seyi; Kasteng, Frida; Lingam, Raghu; Vassall, Anna; Kertho, Edmound; Settumba, Stella; Etou, Patrick L; Nanyonjo, Agnes; Ten Asbroek, Guus; Kallander, Karin; +2 more... Kirkwood, Betty; inSCALE Study Group; (2018) Variation in the quality and out-of-pocket cost of treatment for childhood malaria, diarrhoea, and pneumonia: Community and facility based care in rural Uganda. PloS one, 13 (11). e0200543-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0200543

Staedke, Sarah G; Maiteki-Sebuguzi, Catherine; Rehman, Andrea M; Kigozi, Simon P; Gonahasa, Samuel; Okiring, Jaffer; Lindsay, Steve W; Kamya, Moses R; Chandler, Clare IR; Dorsey, Grant; +1 more... Drakeley, Chris; (2018) Assessment of community-level effects of intermittent preventive treatment for malaria in schoolchildren in Jinja, Uganda (START-IPT trial): a cluster-randomised trial. The Lancet Global health, 6 (6). e668-e679. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(18)30126-8

Stockdale, Lisa; Nash, Stephen; Nalwoga, Angela; Gibson, Lorna; Painter, Hannah; Raynes, John; Asiki, Gershim; Newton, Robert; Fletcher, Helen; (2018) HIV, HCMV and mycobacterial antibody levels: a cross-sectional study in a rural Ugandan cohort. Tropical Medicine & International Health, 24 (2). pp. 247-257. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.13188

Stockdale, Lisa; Nash, Stephen; Nalwoga, Angela; Painter, Hannah; Asiki, Gershim; Fletcher, Helen; Newton, Robert; (2018) Human cytomegalovirus epidemiology and relationship to tuberculosis and cardiovascular disease risk factors in a rural Ugandan cohort. PloS one, 13 (2). e0192086-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0192086

Stone, Will JR; Campo, Joseph J; Ouédraogo, André Lin; Meerstein-Kessel, Lisette; Morlais, Isabelle; Da, Dari; Cohuet, Anna; Nsango, Sandrine; Sutherland, Colin J; van de Vegte-Bolmer, Marga; +24 more... Siebelink-Stoter, Rianne; van Gemert, Geert-Jan; Graumans, Wouter; Lanke, Kjerstin; Shandling, Adam D; Pablo, Jozelyn V; Teng, Andy A; Jones, Sophie; de Jong, Roos M; Fabra-García, Amanda; Bradley, John; Roeffen, Will; Lasonder, Edwin; Gremo, Giuliana; Schwarzer, Evelin; Janse, Chris J; Singh, Susheel K; Theisen, Michael; Felgner, Phil; Marti, Matthias; Drakeley, Chris; Sauerwein, Robert; Bousema, Teun; Jore, Matthijs M; (2018) Publisher Correction: Unravelling the immune signature of Plasmodium falciparum transmission-reducing immunity. Nature communications, 9 (1). 1498-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-03769-w

Stone, Will JR; Campo, Joseph J; Ouédraogo, André Lin; Meerstein-Kessel, Lisette; Morlais, Isabelle; Da, Dari; Cohuet, Anna; Nsango, Sandrine; Sutherland, Colin J; van de Vegte-Bolmer, Marga; +24 more... Siebelink-Stoter, Rianne; van Gemert, Geert-Jan; Graumans, Wouter; Lanke, Kjerstin; Shandling, Adam D; Pablo, Jozelyn V; Teng, Andy A; Jones, Sophie; de Jong, Roos M; Fabra-García, Amanda; Bradley, John; Roeffen, Will; Lasonder, Edwin; Gremo, Giuliana; Schwarzer, Evelin; Janse, Chris J; Singh, Susheel K; Theisen, Michael; Felgner, Phil; Marti, Matthias; Drakeley, Chris; Sauerwein, Robert; Bousema, Teun; Jore, Matthijs M; (2018) Unravelling the immune signature of Plasmodium falciparum transmission-reducing immunity. Nature communications, 9 (1). 558-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-017-02646-2

Stratakos, Alexandros Ch; Linton, Mark; Ward, Patrick; Campbell, Mairead; Kelly, Carmel; Pinkerton, Laurette; Stef, Lavinia; Pet, Ioan; Stef, Ducu; Iancu, Tiberiu; +3 more... Theodoridou, Katerina; Gundogdu, Ozan; Corcionivoschi, Nicolae; (2018) The Antimicrobial Effect of a Commercial Mixture of Natural Antimicrobials Against Escherichia coli O157:H7. Foodborne pathogens and disease, 16 (2). pp. 119-129. ISSN 1535-3141 DOI: https://doi.org/10.1089/fpd.2018.2465

Stresman, Gillian H; Mwesigwa, Julia; Achan, Jane; Giorgi, Emanuele; Worwui, Archibald; Jawara, Musa; Di Tanna, Gian Luca; Bousema, Teun; Van Geertruyden, Jean-Pierre; Drakeley, Chris; +1 more... D'Alessandro, Umberto; (2018) Do hotspots fuel malaria transmission: a village-scale spatio-temporal analysis of a 2-year cohort study in The Gambia. BMC medicine, 16 (1). 160-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-018-1141-4

Sung, Po-Yu; Vaughan, Robert; Rahman, Shah Kamranur; Yi, Guanghui; Kerviel, Adeline; Kao, C Cheng; Roy, Polly; (2018) The Interaction of Bluetongue Virus VP6 and Genomic RNA Is Essential for Genome Packaging. Journal of virology, 93 (5). ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.02023-18

Tadesse, Fitsum G; Slater, Hannah C; Chali, Wakweya; Teelen, Karina; Lanke, Kjerstin; Belachew, Mulualem; Menberu, Temesgen; Shumie, Girma; Shitaye, Getasew; Okell, Lucy C; +14 more... Graumans, Wouter; van Gemert, Geert-Jan; Kedir, Soriya; Tesfaye, Addisu; Belachew, Feleke; Abebe, Wake; Mamo, Hassen; Sauerwein, Robert; Balcha, Taye; Aseffa, Abraham; Yewhalaw, Delenasaw; Gadisa, Endalamaw; Drakeley, Chris; Bousema, Teun; (2018) The Relative Contribution of Symptomatic and Asymptomatic Plasmodium vivax and Plasmodium falciparum Infections to the Infectious Reservoir in a Low-Endemic Setting in Ethiopia. Clinical infectious diseases, 66 (12). pp. 1883-1891. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix1123

Tang, Howard HF; Teo, Shu Mei; Belgrave, Danielle CM; Evans, Michael D; Jackson, Daniel J; Brozynska, Marta; Kusel, Merci MH; Johnston, Sebastian L; Gern, James E; Lemanske, Robert F; +6 more... Simpson, Angela; Custovic, Adnan; Sly, Peter D; Holt, Patrick G; Holt, Kathryn E; Inouye, Michael; (2018) Abstract. ELIFE, 7. ISSN 2050-084X DOI: https://doi.org/10.7554/elife.35856.001

Tang, Howard Hf; Teo, Shu Mei; Belgrave, Danielle Cm; Evans, Michael D; Jackson, Daniel J; Brozynska, Marta; Kusel, Merci Mh; Johnston, Sebastian L; Gern, James E; Lemanske, Robert F; +6 more... Simpson, Angela; Custovic, Adnan; Sly, Peter D; Holt, Patrick G; Holt, Kathryn E; Inouye, Michael; (2018) Trajectories of childhood immune development and respiratory health relevant to asthma and allergy. eLife, 7. e35856-. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.35856

Tarr, Sarah J; Díaz-Ingelmo, Ofelia; Stewart, Lindsay B; Hocking, Suzanne E; Murray, Lee; Duffy, Craig W; Otto, Thomas D; Chappell, Lia; Rayner, Julian C; Awandare, Gordon A; +1 more... Conway, David J; (2018) Schizont transcriptome variation among clinical isolates and laboratory-adapted clones of the malaria parasite Plasmodium falciparum. BMC GENOMICS, 19 (1). 894-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-018-5257-x

Teo, Shu Mei; Tang, Howard HF; Mok, Danny; Judd, Louise M; Watts, Stephen C; Pham, Kym; Holt, Barbara J; Kusel, Merci; Serralha, Michael; Troy, Niamh; +9 more... Bochkov, Yury A; Grindle, Kristine; Lemanske, Robert F; Johnston, Sebastian L; Gern, James E; Sly, Peter D; Holt, Patrick G; Holt, Kathryn E; Inouye, Michael; (2018) Airway Microbiota Dynamics Uncover a Critical Window for Interplay of Pathogenic Bacteria and Allergy in Childhood Respiratory Disease. Cell host & microbe, 24 (3). 341-352.e5. ISSN 1931-3128 DOI: https://doi.org/10.1016/j.chom.2018.08.005

Thomas, James A; Baker, Nicola; Hutchinson, Sebastian; Dominicus, Caia; Trenaman, Anna; Glover, Lucy; Alsford, Sam; Horn, David; (2018) Insights into antitrypanosomal drug mode-of-action from cytology-based profiling. PLOS NEGLECTED TROPICAL DISEASES, 12 (11). e0006980-. ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0006980

Thomas, James A; Tan, Michele SY; Bisson, Claudine; Borg, Aaron; Umrekar, Trishant R; Hackett, Fiona; Hale, Victoria L; Vizcay-Barrena, Gema; Fleck, Roland A; Snijders, Ambrosius P; +2 more... Saibil, Helen R; Blackman, Michael J; (2018) A protease cascade regulates release of the human malaria parasite Plasmodium falciparum from host red blood cells. Nature microbiology, 3 (4). pp. 447-455. ISSN 2058-5276 DOI: https://doi.org/10.1038/s41564-018-0111-0

Thompson, Andrew M; O'Connor, Patrick D; Marshall, Andrew J; Blaser, Adrian; Yardley, Vanessa; Maes, Louis; Gupta, Suman; Launay, Delphine; Braillard, Stephanie; Chatelain, Eric; +5 more... Wan, Baojie; Franzblau, Scott G; Ma, Zhenkun; Cooper, Christopher B; Denny, William A; (2018) Development of (6 R)-2-Nitro-6-[4-(trifluoromethoxy)phenoxy]-6,7-dihydro-5 H-imidazo[2,1- b][1,3]oxazine (DNDI-8219): A New Lead for Visceral Leishmaniasis. Journal of medicinal chemistry, 61 (6). pp. 2329-2352. ISSN 0022-2623 DOI: https://doi.org/10.1021/acs.jmedchem.7b01581

Tomasicchio, Michele; Davids, Malika; Pooran, Anil; Theron, Grant; Smith, Liezel; Semple, Lynn; Meldau, Richard; Hapgood, Janet Patricia; Dheda, Keertan; (2018) The Injectable Contraceptive Medroxyprogesterone Acetate Attenuates Mycobacterium tuberculosis-Specific Host Immunity Through the Glucocorticoid Receptor. The Journal of infectious diseases, 219 (8). pp. 1329-1337. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiy657

Torraca, Vincenzo; Mostowy, Serge; (2018) Zebrafish Infection: From Pathogenesis to Cell Biology. TRENDS IN CELL BIOLOGY, 28 (2). pp. 143-156. ISSN 0962-8924 DOI: https://doi.org/10.1016/j.tcb.2017.10.002

Torrellas, Annhymariet; Ferrer, Elizabeth; Cruz, Israel; Lima, Héctor de; Delgado, Olinda; Rangel, José Carrero; Bravo, José Arturo; Chicharro, Carmen; Llanes-Acevedo, Ivonne Pamela; Miles, Michael A; +1 more... Feliciangeli, María Dora; (2018) Molecular typing reveals the co-existence of two transmission cycles of American cutaneous leishmaniasis in the Andean Region of Venezuela with Lutzomyia migonei as the vector. Memorias do Instituto Oswaldo Cruz, 113 (12). e180323-. ISSN 1678-8060 DOI: https://doi.org/10.1590/0074-02760180323

Tsagris, Denise J; Birchall, Kristian; Bouloc, Nathalie; Large, Jonathan M; Merritt, Andy; Smiljanic-Hurley, Ela; Wheldon, Mary; Ansell, Keith H; Kettleborough, Catherine; Whalley, David; +4 more... Stewart, Lindsay B; Bowyer, Paul W; Baker, David A; Osborne, Simon A; (2018) Trisubstituted thiazoles as potent and selective inhibitors of Plasmodium falciparum protein kinase G (PfPKG). Bioorganic & medicinal chemistry letters, 28 (19). pp. 3168-3173. ISSN 0960-894X DOI: https://doi.org/10.1016/j.bmcl.2018.08.028

Ugarte-Ruiz, Maria; Domínguez, Lucas; Corcionivoschi, Nicolae; Wren, Brendan W; Dorrell, Nick; Gundogdu, Ozan; (2018) Exploring the oxidative, antimicrobial and genomic properties of Campylobacter jejuni strains isolated from poultry. Research in veterinary science, 119. pp. 170-175. ISSN 0034-5288 DOI: https://doi.org/10.1016/j.rvsc.2018.06.016

Valiente, Esmeralda; Davies, Cadi; Mills, Dominic C; Getino, Maria; Ritchie, Jennifer M; Wren, Brendan W; (2018) Vibrio cholerae accessory colonisation factor AcfC: a chemotactic protein with a role in hyperinfectivity. Scientific reports, 8 (1). 8390-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-26570-7

Van Bocxlaer, Katrien; Gaukel, Eric; Hauser, Deirdre; Park, Seong Hee; Schock, Sara; Yardley, Vanessa; Randolph, Ryan; Plattner, Jacob J; Merchant, Tejal; Croft, Simon L; +2 more... Jacobs, Robert T; Wring, Stephen A; (2018) Topical Treatment for Cutaneous Leishmaniasis: Dermato-Pharmacokinetic Lead Optimization of Benzoxaboroles. Antimicrobial agents and chemotherapy, 62 (5). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.02419-17

Vasileva Wand, Nadina I; Bonney, Laura C; Watson, Robert J; Graham, Victoria; Hewson, Roger; (2018) Point-of-care diagnostic assay for the detection of Zika virus using the recombinase polymerase amplification method. The Journal of general virology, 99 (8). pp. 1012-1026. ISSN 0022-1317 DOI: https://doi.org/10.1099/jgv.0.001083

Vasileva, Hristina; Butcher, Robert; Pickering, Harry; Sokana, Oliver; Jack, Kelvin; Solomon, Anthony W; Holland, Martin J; Roberts, Chrissy H; (2018) Conjunctival transcriptome profiling of Solomon Islanders with active trachoma in the absence of Chlamydia trachomatis infection. Parasites & vectors, 11 (1). 104-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-018-2682-2

Voak, Andrew A; Standing, Joseph F; Sepúlveda, Nuno; Harris, Andy; Croft, Simon L; Seifert, Karin; (2018) Pharmacodynamics and cellular accumulation of amphotericin B and miltefosine in Leishmania donovani-infected primary macrophages. The Journal of antimicrobial chemotherapy, 73 (5). pp. 1314-1323. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dky014

Voss, Gerald; Casimiro, Danilo; Neyrolles, Olivier; Williams, Ann; Kaufmann, Stefan HE; McShane, Helen; Hatherill, Mark; Fletcher, Helen A; (2018) Progress and challenges in TB vaccine development. F1000Research, 7. 199-. ISSN 2046-1402 DOI: https://doi.org/10.12688/f1000research.13588.1

van Beek, Anna E; Sarr, Isatou; Correa, Simon; Nwakanma, Davis; Brouwer, Mieke C; Wouters, Diana; Secka, Fatou; Anderson, Suzanne TB; Conway, David J; Walther, Michael; +3 more... Levin, Michael; Kuijpers, Taco W; Cunnington, Aubrey J; (2018) Complement Factor H Levels Associate With Plasmodium falciparum Malaria Susceptibility and Severity. Open forum infectious diseases, 5 (7). ofy166-. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofy166

van Beek, Janko; de Graaf, Miranda; Al-Hello, Haider; Allen, David J; Ambert-Balay, Katia; Botteldoorn, Nadine; Brytting, Mia; Buesa, Javier; Cabrerizo, Maria; Chan, Martin; +23 more... Cloak, Fiona; Di Bartolo, Ilaria; Guix, Susana; Hewitt, Joanne; Iritani, Nobuhiro; Jin, Miao; Johne, Reimar; Lederer, Ingeborg; Mans, Janet; Martella, Vito; Maunula, Leena; McAllister, Georgina; Niendorf, Sandra; Niesters, Hubert G; Podkolzin, Alexander T; Poljsak-Prijatelj, Mateja; Rasmussen, Lasse Dam; Reuter, Gábor; Tuite, Gráinne; Kroneman, Annelies; Vennema, Harry; Koopmans, Marion PG; NoroNet; (2018) Molecular surveillance of norovirus, 2005-16: an epidemiological analysis of data collected from the NoroNet network. The Lancet infectious diseases, 18 (5). pp. 545-553. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(18)30059-8

van Meijgaarden, Krista E; Khatri, Bhagwati; Smith, Steven G; Drittij, Anne MFH; de Paus, Roelof A; Goeman, Jelle J; Ho, Mei M; Dockrell, Hazel M; McShane, Helen; Joosten, Simone A; +1 more... Ottenhoff, Tom HM; (2018) Cross-laboratory evaluation of multiplex bead assays including independent common reference standards for immunological monitoring of observational and interventional human studies. PloS one, 13 (9). e0201205-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0201205

Wall, Richard J; Ferguson, David JP; Freville, Aline; Franke-Fayard, Blandine; Brady, Declan; Zeeshan, Mohammad; Bottrill, Andrew R; Wheatley, Sally; Fry, Andrew M; Janse, Chris J; +4 more... Yamano, Hiroyuki; Holder, Anthony A; Guttery, David S; Tewari, Rita; (2018) Plasmodium APC3 mediates chromosome condensation and cytokinesis during atypical mitosis in male gametogenesis. SCIENTIFIC REPORTS, 8 (1). 5610-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-23871-9

Wang, Claire YT; McCarthy, James S; Stone, Will J; Bousema, Teun; Collins, Katharine A; Bialasiewicz, Seweryn; (2018) Assessing Plasmodium falciparum transmission in mosquito-feeding assays using quantitative PCR. Malaria journal, 17 (1). 249-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-018-2382-6

Watts, Stephen C; Ritchie, Scott C; Inouye, Michael; Holt, Kathryn E; (2018) FastSpar: rapid and scalable correlation estimation for compositional data. Bioinformatics, 35 (6). pp. 1064-1066. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/bty734

Weiner, January; Maertzdorf, Jeroen; Sutherland, Jayne S; Duffy, Fergal J; Thompson, Ethan; Suliman, Sara; McEwen, Gayle; Thiel, Bonnie; Parida, Shreemanta K; Zyla, Joanna; +12 more... Hanekom, Willem A; Mohney, Robert P; Boom, W Henry; Mayanja-Kizza, Harriet; Howe, Rawleigh; Dockrell, Hazel M; Ottenhoff, Tom HM; Scriba, Thomas J; Zak, Daniel E; Walzl, Gerhard; Kaufmann, Stefan HE; GC6-74 consortium; (2018) Metabolite changes in blood predict the onset of tuberculosis. Nature Communications, 9 (1). 5208-. DOI: https://doi.org/10.1038/s41467-018-07635-7

Wick, Ryan R; Heinz, Eva; Holt, Kathryn E; Wyres, Kelly L; (2018) Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes. JOURNAL OF CLINICAL MICROBIOLOGY, 56 (6). ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.00197-18

Wick, Ryan R; Judd, Louise M; Holt, Kathryn E; (2018) Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks. PLoS computational biology, 14 (11). e1006583-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1006583

Wick, Ryan R; Judd, Louise M; Holt, Kathryn E; (2018) Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks. DOI: https://doi.org/10.1101/366526

Wijnant, Gert-Jan; Van Bocxlaer, Katrien; Fortes Francisco, Amanda; Yardley, Vanessa; Harris, Andy; Alavijeh, Mo; Murdan, Sudaxshina; Croft, Simon L; (2018) Local Skin Inflammation in Cutaneous Leishmaniasis as a Source of Variable Pharmacokinetics and Therapeutic Efficacy of Liposomal Amphotericin B. Antimicrobial agents and chemotherapy, 62 (10). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.00631-18

Wijnant, Gert-Jan; Van Bocxlaer, Katrien; Yardley, Vanessa; Harris, Andy; Alavijeh, Mo; Silva-Pedrosa, Rita; Antunes, Sandra; Mauricio, Isabel; Murdan, Sudaxshina; Croft, Simon L; (2018) Comparative efficacy, toxicity and biodistribution of the liposomal amphotericin B formulations Fungisome® and AmBisome® in murine cutaneous leishmaniasis. International journal for parasitology Drugs and drug resistance, 8 (2). pp. 223-228. ISSN 2211-3207 DOI: https://doi.org/10.1016/j.ijpddr.2018.04.001

Willcocks, Samuel J; Stabler, Richard A; Atkins, Helen S; Oyston, Petra F; Wren, Brendan W; (2018) High-throughput analysis of Yersinia pseudotuberculosis gene essentiality in optimised in vitro conditions, and implications for the speciation of Yersinia pestis. BMC microbiology, 18 (1). 46-. ISSN 1471-2180 DOI: https://doi.org/10.1186/s12866-018-1189-5

Willis, Alexandra R; Torraca, Vincenzo; Gomes, Margarida C; Shelley, Jennifer; Mazon-Moya, Maria; Filloux, Alain; Lo Celso, Cristina; Mostowy, Serge; (2018) Shigella-Induced Emergency Granulopoiesis Protects Zebrafish Larvae from Secondary Infection. mBio, 9 (3). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.00933-18

Witmer, Kathrin; Sherrard-Smith, Ellie; Straschil, Ursula; Tunnicliff, Mark; Baum, Jake; Delves, Michael; (2018) An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies. Malaria journal, 17 (1). 282-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-018-2436-9

Wyres, Kelly L; Hawkey, Jane; Hetland, Marit AK; Fostervold, Aasmund; Wick, Ryan R; Judd, Louise M; Hamidian, Mohammad; Howden, Benjamin P; Löhr, Iren H; Holt, Kathryn E; (2018) Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307. The Journal of antimicrobial chemotherapy, 74 (3). pp. 577-581. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dky492

Wyres, Kelly L; Holt, Kathryn E; (2018) Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria. Current opinion in microbiology, 45. pp. 131-139. ISSN 1369-5274 DOI: https://doi.org/10.1016/j.mib.2018.04.004

Wyres, Kelly L; Holt, Kathryn E; (2018) <i>Klebsiella pneumoniae</i> as a key trafficker of drug resistance genes from environmental to clinically important bacteria. PeerJ Preprints. DOI: https://doi.org/10.7287/peerj.preprints.26852

Wyres, Kelly L; Lam, Margaret MC; Holt, Kathryn E; (2018) Comment on: CG258 Klebsiella pneumoniae isolates without β-lactam resistance at the onset of the carbapenem-resistant Enterobacteriaceae epidemic in New York City. The Journal of Antimicrobial Chemotherapy, 74 (3). pp. 831-833. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dky472

Wyres, Kelly L; Wick, Ryan R; Judd, Louise M; Froumine, Roni; Tokolyi, Alex; Gorrie, Claire L; Lam, Margaret MC; Duchêne, Sebastián; Jenney, Adam; Holt, Kathryn E; (2018) Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of<i>Klebsiella pneumoniae</i>. DOI: https://doi.org/10.1101/414235

Xu, Yong; Cuccui, Jon; Denman, Carmen; Maharjan, Tripty; Wren, Brendan W; Wagner, Gerd K; (2018) Structure-activity relationships in a new class of non-substrate-like covalent inhibitors of the bacterial glycosyltransferase LgtC. Bioorganic & medicinal chemistry, 26 (11). pp. 2973-2983. ISSN 0968-0896 DOI: https://doi.org/10.1016/j.bmc.2018.03.006

Zelmer, Andrea; Stockdale, Lisa; Prabowo, Satria A; Cia, Felipe; Spink, Natasha; Gibb, Matthew; Eddaoudi, Ayad; Fletcher, Helen A; (2018) High monocyte to lymphocyte ratio is associated with impaired protection after subcutaneous administration of BCG in a mouse model of tuberculosis. F1000Research, 7. p. 296. DOI: https://doi.org/10.12688/f1000research.14239.2

Zelmer, Andrea; Stockdale, Lisa; Prabowo, Satria A; Cia, Felipe; Spink, Natasha; Gibb, Matthew; Eddaoudi, Ayad; Fletcher, Helen A; (2018) High monocyte to lymphocyte ratio is associated with impaired protection after subcutaneous administration of BCG in a mouse model of tuberculosis. F1000Research, 7. 296-. ISSN 2046-1402 DOI: https://doi.org/10.12688/f1000research.14239.2

Zhou, Zhemin; Lundstrøm, Inge; Tran-Dien, Alicia; Duchêne, Sebastián; Alikhan, Nabil-Fareed; Sergeant, Martin J; Langridge, Gemma; Fotakis, Anna K; Nair, Satheesh; Stenøien, Hans K; +9 more... Hamre, Stian S; Casjens, Sherwood; Christophersen, Axel; Quince, Christopher; Thomson, Nicholas R; Weill, François-Xavier; Ho, Simon YW; Gilbert, M Thomas P; Achtman, Mark; (2018) Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia. CURRENT BIOLOGY, 28 (15). 2420-2428.e10. ISSN 0960-9822 DOI: https://doi.org/10.1016/j.cub.2018.05.058

Zhu, Bingdong; Dockrell, Hazel M; Ottenhoff, Tom HM; Evans, Thomas G; Zhang, Ying; (2018) Tuberculosis vaccines: Opportunities and challenges. Respirology (Carlton, Vic), 23 (4). pp. 359-368. ISSN 1323-7799 DOI: https://doi.org/10.1111/resp.13245 Full text not available from this repository.