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Britto, Carl D; Dyson, Zoe A; Duchene, Sebastian; Carter, Michael J; Gurung, Meeru; Kelly, Dominic F; Murdoch, David R; Ansari, Imran; Thorson, Stephen; Shrestha, Shrijana; +4 more... Adhikari, Neelam; Dougan, Gordon; Holt, Kathryn E; Pollard, Andrew J; (2018) Laboratory and molecular surveillance of paediatric typhoidal Salmonella in Nepal: Antimicrobial resistance and implications for vaccine policy. PLOS NEGLECTED TROPICAL DISEASES, 12 (4). e0006408-. ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0006408

Britto, Carl D; Dyson, Zoe A; Mathias, Sitarah; Bosco, Ashish; Dougan, Gordon; Jose, Sanju; Nagaraj, Savitha; Holt, Kathryn E; Pollard, Andrew J; (2020) Persistent circulation of a fluoroquinolone-resistant Salmonella enterica Typhi clone in the Indian subcontinent. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 75 (2). pp. 337-341. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkz435

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Carey, Megan E; Jain, Ruby; Yousuf, Mohammad; Maes, Mailis; Dyson, Zoe A; Thu, Trang Nguyen Hoang; Nguyen Thi Nguyen, To; Ho Ngoc Dan, Thanh; Nhu Pham Nguyen, Quynh; Mahindroo, Jaspreet; +4 more... Thanh Pham, Duy; Sandha, Kawaljeet Singh; Baker, Stephen; Taneja, Neelam; (2021) Spontaneous Emergence of Azithromycin Resistance in Independent Lineages of Salmonella Typhi in Northern India. Clinical Infectious Diseases, 72 (5). e120-e127. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciaa1773

Duchene, Sebastian; Duchene, David A; Geoghegan, Jemma L; Dyson, Zoe A; Hawkey, Jane; Holt, Kathryn E; (2018) Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods. BMC EVOLUTIONARY BIOLOGY, 18 (1). 95-. ISSN 1471-2148 DOI: https://doi.org/10.1186/s12862-018-1210-5

Dyson, Zoe A; Holt, Kathryn E; (2021) Five Years of GenoTyphi: Updates to the Global Salmonella Typhi Genotyping Framework. JOURNAL OF INFECTIOUS DISEASES, 224 (12 Sup). S775-S780. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiab414

Dyson, Zoe A; Thanh, Duy Pham; Bodhidatta, Ladaporn; Mason, Carl Jeffries; Srijan, Apichai; Rabaa, Maia A; Vinh, Phat Voong; Thanh, Tuyen Ha; Thwaites, Guy E; Baker, Stephen; +1 more... Holt, Kathryn E; (2017) Whole Genome Sequence Analysis of Salmonella Typhi Isolated in Thailand before and after the Introduction of a National Immunization Program. PLoS neglected tropical diseases, 11 (1). e0005274-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005274

Dyson, Zoe Anne; Malau, Elisheba; Horwood, Paul F; Ford, Rebecca; Siba, Valentine; Yoannes, Mition; Pomat, William; Passey, Megan; Judd, Louise M; Ingle, Danielle J; +4 more... Williamson, Deborah A; Dougan, Gordon; Greenhill, Andrew R; Holt, Kathryn E; (2022) Whole genome sequence analysis of Salmonella Typhi in Papua New Guinea reveals an established population of genotype 2.1.7 sensitive to antimicrobials. PLoS Neglected Tropical Diseases, 16 (3). e0010306-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0010306

Ingle, Danielle J; Nair, Satheesh; Hartman, Hassan; Ashton, Philip M; Dyson, Zoe A; Day, Martin; Freedman, Joanne; Chattaway, Marie A; Holt, Kathryn E; Dallman, Timothy J; (2019) Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers. PLoS neglected tropical diseases, 13 (9). e0007620-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0007620

Kariuki, Samuel; Dyson, Zoe A; Mbae, Cecilia; Ngetich, Ronald; Kavai, Susan M; Wairimu, Celestine; Anyona, Stephen; Gitau, Naomi; Onsare, Robert Sanaya; Ongandi, Beatrice; +5 more... Duchene, Sebastian; Ali, Mohamed; Clemens, John David; Holt, Kathryn E; Dougan, Gordon; (2021) Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, Kenya. eLife, 10. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.67852

Khokhar, Fahad; Pickard, Derek; Dyson, Zoe; Iqbal, Junaid; Pragasam, Agila; John, Jobin Jacob; Veeraraghavan, Balaji; Qamar, Farah; Dougan, Gordon; MacQueen, Hilary; +3 more... Rigas, Sushila; Holmes, Mark; Mutreja, Ankur; (2022) Multiplex PCR assay to detect high risk lineages of Salmonella Typhi and Paratyphi A. PLoS One, 17 (7). e0267805-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0267805

Maes, Mailis; Sikorski, Michael J; Carey, Megan E; Higginson, Ellen E; Dyson, Zoe A; Fernandez, Alda; Araya, Pamela; Tennant, Sharon M; Baker, Stephen; Lagos, Rosanna; +3 more... Hormazábal, Juan Carlos; Levine, Myron M; Dougan, Gordon; (2022) Whole genome sequence analysis of Salmonella Typhi provides evidence of phylogenetic linkage between cases of typhoid fever in Santiago, Chile in the 1980s and 2010-2016. PLoS neglected tropical diseases, 16 (6). e0010178-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0010178

Miles, Sydney L; Torraca, Vincenzo; Dyson, Zoe A; López-Jiménez, Ana Teresa; Foster-Nyarko, Ebenezer; Lobato-Márquez, Damián; Jenkins, Claire; Holt, Kathryn E; Mostowy, Serge; (2023) Acquisition of a large virulence plasmid (pINV) promoted temperature-dependent virulence and global dispersal of O96:H19 enteroinvasive Escherichia coli. mBio, 14 (4). e0088223-. ISSN 2150-7511 DOI: https://doi.org/10.1128/mbio.00882-23

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Pereira-Dias, Joana; Taneja, Neelam; Mahindroo, Jaspreet; Maheshwari, Geeti; Patel, Padma J; Thu, Trang Nguyen Hoang; Keane, Jacqui; Dyson, Zoe A; Baker, Stephen; Mylona, Elli; (2023) The genomic characterization of Salmonella Paratyphi A from an outbreak of enteric fever in Vadodara, India. Microbial genomics, 9 (1). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000914

Rahman, Sadia Isfat Ara; Dyson, Zoe A; Klemm, Elizabeth J; Khanam, Farhana; Holt, Kathryn E; Chowdhury, Emran Kabir; Dougan, Gordon; Qadri, Firdausi; (2020) Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in urban Dhaka, Bangladesh from 2004 to 2016. PLOS NEGLECTED TROPICAL DISEASES, 14 (2). e0008036-. ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0008036

Rahman, Sadia Isfat Ara; Nguyen, To Nguyen Thi; Khanam, Farhana; Thomson, Nicholas R; Dyson, Zoe A; Taylor-Brown, Alyce; Chowdhury, Emran Kabir; Dougan, Gordon; Baker, Stephen; Qadri, Firdausi; (2021) Genetic diversity of Salmonella Paratyphi A isolated from enteric fever patients in Bangladesh from 2008 to 2018. PLoS Neglected Tropical Diseases, 15 (10). e0009748-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0009748

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