Mahindroo, Jaspreet; Thanh, Duy Pham; Kaur, Harpreet; To Nguyen Thi Nguyen; Nguyen, Trang Hoang Thu; Carey, Megan E; Verma, Ritu; Mohan, Balvinder; Thakur, Siddhartha; Baker, Stephen; +1 more... Taneja, Neelam; (2024) The genomic diversity and antimicrobial resistance of Non-typhoidal Salmonella in humans and food animals in Northern India. One Health (Amsterdam, Netherlands), 19. 100892-. ISSN 2352-7714 DOI: https://doi.org/10.1016/j.onehlt.2024.100892

Carey, Megan E; Dyson, Zoe A; Argimón, Silvia; Cerdeira, Louise; Yeats, Corin; Aanensen, David; Mboowa, Gerald; Baker, Stephen; Tessema, Sofonias K; Smith, Anthony M; +2 more... Okeke, Iruka N; Holt, Kathryn E; (2023) Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization. Open forum infectious diseases, 10 (Suppl ). S38-S46. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofad044

Carey, Megan E; Dyson, Zoe A; Ingle, Danielle J; Amir, Afreenish; Aworh, Mabel K; Chattaway, Marie Anne; Chew, Ka Lip; Crump, John A; Feasey, Nicholas A; Howden, Benjamin P; +105 more... Keddy, Karen H; Maes, Mailis; Parry, Christopher M; Van Puyvelde, Sandra; Webb, Hattie E; Afolayan, Ayorinde Oluwatobiloba; Alexander, Anna P; Anandan, Shalini; Andrews, Jason R; Ashton, Philip M; Basnyat, Buddha; Bavdekar, Ashish; Bogoch, Isaac I; Clemens, John D; da Silva, Kesia Esther; De, Anuradha; de Ligt, Joep; Diaz Guevara, Paula Lucia; Dolecek, Christiane; Dutta, Shanta; Ehlers, Marthie M; Francois Watkins, Louise; Garrett, Denise O; Godbole, Gauri; Gordon, Melita A; Greenhill, Andrew R; Griffin, Chelsey; Gupta, Madhu; Hendriksen, Rene S; Heyderman, Robert S; Hooda, Yogesh; Hormazabal, Juan Carlos; Ikhimiukor, Odion O; Iqbal, Junaid; Jacob, Jobin John; Jenkins, Claire; Jinka, Dasaratha Ramaiah; John, Jacob; Kang, Gagandeep; Kanteh, Abdoulie; Kapil, Arti; Karkey, Abhilasha; Kariuki, Samuel; Kingsley, Robert A; Koshy, Roshine Mary; Lauer, AC; Levine, Myron M; Lingegowda, Ravikumar Kadahalli; Luby, Stephen P; Mackenzie, Grant Austin; Mashe, Tapfumanei; Msefula, Chisomo; Mutreja, Ankur; Nagaraj, Geetha; Nagaraj, Savitha; Nair, Satheesh; Naseri, Take K; Nimarota-Brown, Susana; Njamkepo, Elisabeth; Okeke, Iruka N; Perumal, Sulochana Putli Bai; Pollard, Andrew J; Pragasam, Agila Kumari; Qadri, Firdausi; Qamar, Farah N; Rahman, Sadia Isfat Ara; Rambocus, Savitra Devi; Rasko, David A; Ray, Pallab; Robins-Browne, Roy; Rongsen-Chandola, Temsunaro; Rutanga, Jean Pierre; Saha, Samir K; Saha, Senjuti; Saigal, Karnika; Sajib, Mohammad Saiful Islam; Seidman, Jessica C; Shakya, Jivan; Shamanna, Varun; Shastri, Jayanthi; Shrestha, Rajeev; Sia, Sonia; Sikorski, Michael J; Singh, Ashita; Smith, Anthony M; Tagg, Kaitlin A; Tamrakar, Dipesh; Tanmoy, Arif Mohammed; Thomas, Maria; Thomas, Mathew S; Thomsen, Robert; Thomson, Nicholas R; Tupua, Siaosi; Vaidya, Krista; Valcanis, Mary; Veeraraghavan, Balaji; Weill, François-Xavier; Wright, Jackie; Dougan, Gordon; Argimón, Silvia; Keane, Jacqueline A; Aanensen, David M; Baker, Stephen; Holt, Kathryn E; Global Typhoid Genomics Consortium Group Authorship; (2023) Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes. eLife, 12. e85867-. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.85867

Walker, Joseph; Chaguza, Chrispin; Grubaugh, Nathan D; Carey, Megan; Baker, Stephen; Khan, Kamran; Bogoch, Isaac I; Pitzer, Virginia E; (2023) Assessing the global risk of typhoid outbreaks caused by extensively drug resistant Salmonella Typhi. Nature communications, 14 (1). 6502-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-023-42353-9

Maes, Mailis; Sikorski, Michael J; Carey, Megan E; Higginson, Ellen E; Dyson, Zoe A; Fernandez, Alda; Araya, Pamela; Tennant, Sharon M; Baker, Stephen; Lagos, Rosanna; +3 more... Hormazábal, Juan Carlos; Levine, Myron M; Dougan, Gordon; (2022) Whole genome sequence analysis of Salmonella Typhi provides evidence of phylogenetic linkage between cases of typhoid fever in Santiago, Chile in the 1980s and 2010-2016. PLoS neglected tropical diseases, 16 (6). e0010178-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0010178

Waddington, Claire; Carey, Megan E; Boinett, Christine J; Higginson, Ellen; Veeraraghavan, Balaji; Baker, Stephen; (2022) Exploiting genomics to mitigate the public health impact of antimicrobial resistance. Genome medicine, 14 (1). 15-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-022-01020-2

da Silva, Kesia Esther; Tanmoy, Arif Mohammad; Pragasam, Agila Kumari; Iqbal, Junaid; Sajib, Mohammad Saiful Islam; Mutreja, Ankur; Veeraraghavan, Balaji; Tamrakar, Dipesh; Qamar, Farah Naz; Dougan, Gordon; +18 more... Bogoch, Isaac; Seidman, Jessica C; Shakya, Jivan; Vaidya, Krista; Carey, Megan E; Shrestha, Rajeev; Irfan, Seema; Baker, Stephen; Luby, Steve P; Cao, Yanjia; Dyson, Zoe Anne; Garrett, Denise O; John, Jacob; Kang, Gagandeep; Hooda, Yogesh; Saha, Samir K; Saha, Senjuti; Andrews, Jason R; (2022) The international and intercontinental spread and expansion of antimicrobial-resistant Salmonella Typhi: a genomic epidemiology study. The Lancet Microbe, 3 (8). e567-e577. ISSN 2666-5247 DOI: https://doi.org/10.1016/S2666-5247(22)00093-3

Carey, Megan E; Jain, Ruby; Yousuf, Mohammad; Maes, Mailis; Dyson, Zoe A; Thu, Trang Nguyen Hoang; Nguyen Thi Nguyen, To; Ho Ngoc Dan, Thanh; Nhu Pham Nguyen, Quynh; Mahindroo, Jaspreet; +4 more... Thanh Pham, Duy; Sandha, Kawaljeet Singh; Baker, Stephen; Taneja, Neelam; (2021) Spontaneous Emergence of Azithromycin Resistance in Independent Lineages of Salmonella Typhi in Northern India. Clinical Infectious Diseases, 72 (5). e120-e127. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciaa1773

Guevara, Paula Diaz; Maes, Mailis; Thanh, Duy Pham; Duarte, Carolina; Rodriguez, Edna Catering; Montaño, Lucy Angeline; Dan, Thanh Ho Ngoc; Nguyen, To Nguyen Thi; Carey, Megan E; Campos, Josefina; +3 more... Chinen, Isabel; Perez, Enrique; Baker, Stephen; (2021) A genomic snapshot of Salmonella enterica serovar Typhi in Colombia. PLoS neglected tropical diseases, 15 (9). e0009755-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0009755

Haselbeck, Andrea Haekyung; Tadesse, Birkneh Tilahun; Park, Juyeon; Gibani, Malick M; Espinoza, Ligia María Cruz; Abreu, Ariane; Van Rensburg, Craig; Owusu-Ansah, Michael; Twuamsi-Ankrah, Sampson; Owusu, Michael; +20 more... Aguna, Isaac; Picot, Valentina; Jeon, Hyonjin; Higginson, Ellen; Park, Sunju; Mojares, Zenaida R; Im, Justin; Carey, Megan E; Khanam, Farhana; Tonks, Susan; Dougan, Gordon; Kim, Deokryun; Sugimoto, Jonathan; Mogasale, Vittal; Neuzil, Kathleen M; Qadri, Firdausi; Adu-Sarkodie, Yaw; Owusu-Dabo, Ellis; Clemens, John; Marks, Florian; (2021) Evaluation of Typhoid Conjugate Vaccine Effectiveness in Ghana (TyVEGHA) Using a Cluster-Randomized Controlled Phase IV Trial: Trial Design and Population Baseline Characteristics. Vaccines, 9 (3). p. 281. ISSN 2076-393X DOI: https://doi.org/10.3390/vaccines9030281

Park, Se Eun; Pham, Duy Thanh; Pak, Gi Deok; Panzner, Ursula; Maria Cruz Espinoza, Ligia; von Kalckreuth, Vera; Im, Justin; Mogeni, Ondari D; Schütt-Gerowitt, Heidi; Crump, John A; +43 more... Breiman, Robert F; Adu-Sarkodie, Yaw; Owusu-Dabo, Ellis; Rakotozandrindrainy, Raphaël; Bassiahi Soura, Abdramane; Aseffa, Abraham; Gasmelseed, Nagla; Sooka, Arvinda; Keddy, Karen H; May, Jürgen; Aaby, Peter; Biggs, Holly M; Hertz, Julian T; Montgomery, Joel M; Cosmas, Leonard; Olack, Beatrice; Fields, Barry; Sarpong, Nimako; Razafindrabe, Tsiriniaina Jean Luco; Raminosoa, Tiana Mirana; Kabore, Leon Parfait; Sampo, Emmanuel; Teferi, Mekonnen; Yeshitela, Biruk; El Tayeb, Muna Ahmed; Krumkamp, Ralf; Dekker, Denise Myriam; Jaeger, Anna; Tall, Adama; Gassama, Amy; Niang, Aissatou; Bjerregaard-Andersen, Morten; Løfberg, Sandra Valborg; Deerin, Jessica Fung; Park, Jin Kyung; Konings, Frank; Carey, Megan E; Van Puyvelde, Sandra; Ali, Mohammad; Clemens, John; Dougan, Gordon; Baker, Stephen; Marks, Florian; (2021) The genomic epidemiology of multi-drug resistant invasive non-typhoidal Salmonella in selected sub-Saharan African countries. BMJ global health, 6 (8). e005659-e005659. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2021-005659

Carey, Megan E; Diaz, Zoey I; Broadstock, Martin; Bailey, Roderick; Bentsi-Enchill, Adwoa D; Larson, Heidi J; (2019) Toward Control? The Prospects and Challenges of Typhoid Conjugate Vaccine Introduction. CLINICAL INFECTIOUS DISEASES, 69 (Suppl ). S408-S411. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz483